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 \n\n\n\nPDF\n* [*build* Tools](#)   \n\n### Tools\n\n\n\n\n\n	+ [Add to my favourites](#)\n	+ publication\n	International Journal of Systematic and Evolutionary Microbiology\n	http://instance.metastore.ingenta.com/content/journal/ijsem\n	Publication Alert\n	/alerts/setalert\n	/alerts/removealert\n	on\n	 [Create Publication Alert](# "Link to manage alert")\n	(added)\n	\n	\n	\n	citation\_alert\n	Erysipelothrix amsterdamensis sp.\n\nnov., associated with mortalities among endangered seabirds\n	http://instance.metastore.ingenta.com/content/journal/ijsem/10\.1099/ijsem.0\.006264\n	Citation Alert\n	/alerts/setcontentalert\n	/alerts/removecontentalert\n	on\n	 [Create Citation Alert](# "Link to manage alert")\n	(added)\n	\n	\n	\n	correction\_alert\n	Erysipelothrix amsterdamensis sp.\n\nnov., associated with mortalities among endangered seabirds\n	http://instance.metastore.ingenta.com/content/journal/ijsem/10\.1099/ijsem.0\.006264\n	Correction Alert\n	/alerts/setcontentalert\n	/alerts/setcontentalert\n	on\n	 [Create Correction Alert](# "Link to manage alert")\n	(added)\n	+ [Export citation](# "Link to export citations")\n		- [BibTEX](/content/journal/ijsem/10.1099/ijsem.0.006264/cite/bibtex "Link to export in BibTEX format")\n		- [Endnote](/content/journal/ijsem/10.1099/ijsem.0.006264/cite/endnote "Link to export in Endnote format")\n		- [Zotero](/content/journal/ijsem/10.1099/ijsem.0.006264/cite/bibtex "Link to export in Zotero format")\n		- [Medlars](/content/journal/ijsem/10.1099/ijsem.0.006264/cite/medline "Link to export in MEDLARS text")\n		- [RefWorks](/content/journal/ijsem/10.1099/ijsem.0.006264/cite/refworks "Link to export in RefWorks format")\n		- [Mendeley](http://www.mendeley.com/import/?url=https%3A%2F%2Fwww.microbiologyresearch.org%2Fcontent%2Fjournal%2Fijsem%2F10.1099%2Fijsem.0.006264 "Link to export to Mendeley")\n	+ [Recommend to library](/content/journal/ijsem "Link to recommend this journal to a library")\n	+ [Reprints \& Permissions](https://www.copyright.com/openurl?issn=1466-5026&contentIdType=doi&doi=10.1099%2Fijsem.0.006264 "Link to Reprints and Permissions page")\n	+\n* [*share*  Share](#)  \n\n### Share\n\n   \n\n\n\n### Abstract\n\n\n\nInfectious diseases threaten endangered species, particularly in small isolated populations.\n\nSeabird populations on the remote Amsterdam Island in the Indian Ocean have been in decline for the past three decades, with avian cholera caused by Pasteurella multocida proposed as the primary driver.\n\nHowever, Erysipelothrix species have also been sporadically detected from albatrosses on Amsterdam Island and may be contributing to some of the observed mortality.\n\nIn this study, we genomically characterized 16 Erysipelothrix species isolates obtained from three Indian yellow\-nosed albatross (Thalassarche carteri) chick carcasses in 2019\.\n\nHistological analyses suggest that they died of bacterial septicaemia.\n\nTwo isolates were sequenced using both Illumina short\-read and MinION long\-read approaches, which – following hybrid assembly – resulted in closed circular genomes.\n\nMapping of Illumina reads from the remaining isolates to one of these new reference genomes revealed that all 16 isolates were closely related, with a maximum of 13 nucleotide differences distinguishing any pair of isolates.\n\nThe nucleotide diversity of isolates obtained from the same or different carcasses was similar, suggesting all three chicks were likely infected from a common source.\n\nThese genomes were compared with a global collection of genomes from Erysipelothrix rhusiopathiae and other species from the same genus.\n\nThe isolates from albatrosses were phylogenetically distinct, sharing a most recent common ancestor with E. rhusiopathiae.\n\nBased on phylogenomic analysis and standard thresholds for average nucleotide identity and digital DNA–DNA hybridization, these isolates represent a novel Erysipelothrix species, for which we propose the name Erysipelothrix amsterdamensis sp.\n\nnov.\n\nThe type strain is A18Y020dT (\=CIP 112216T\=DSM 115297T).\n\nThe implications of this bacterium for albatross conservation will require further study.\n\n* Received: 
09/09/2023\n* Accepted:
26/01/2024\n* Published Online:
15/02/2024\n\n \n\n**Keyword(s):**\n\n[comparative genomics](/search?value1=%22comparative+genomics%22&option1=pub_keyword "comparative genomics")\n, \n[conservation](/search?value1=%22conservation%22&option1=pub_keyword "conservation")\n, \n[Erysipelothrix](/search?value1=%22Erysipelothrix%22&option1=pub_keyword "Erysipelothrix")\nand \n[yellow\-nosed albatross](/search?value1=%22yellow-nosed+albatross%22&option1=pub_keyword "yellow-nosed albatross")\n\n  ##### Funding\n\n 
This study was supported by the:
* OSU OREME ECOPOP\n	+ **Principle Award Recipient:** 
ThierryBoulinier* Terres Australes et Antarctiques Françaises\n	+ **Principle Award Recipient:** 
ThierryBoulinier* ANR ECOPATHS
(Award ANR\-21\-CE35\-0016\)\n	+ **Principle Award Recipient:** 
ThierryBoulinier* Strategic Environmental Research and Development Program
(Award RC2635\)\n	+ **Principle Award Recipient:** 
AmandineGamble* Institut Polaire Français Paul Emile Victor
(Award IPEV ECOPATH\-1151\)\n	+ **Principle Award Recipient:** 
ThierryBoulinier* National Science Foundation
(Award DEB\-1557022\)\n	+ **Principle Award Recipient:** 
AmandineGamble\n\n \n\n\n© 2024 The Authors\n\n\n* This is an open\-access article distributed under the terms of the Creative Commons Attribution License.\n\nThis article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.\n\n!\n\n[Loading](/images/jp/spinner.gif)\nArticle metrics loading...\n\n\n\n\n/content/journal/ijsem/10\.1099/ijsem.0\.006264\n2024\-02\-15\n2024\-08\-02\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n[Download as PowerPoint](#)\n\n\n!\n\n[Loading full text...](/images/jp/spinner.gif)\nFull text loading...\n\n\n\n 
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Follow these guidelines:\n\n 1. Produce a detailed and in-depth report that remains clear and concise.\n 2. Focus on main ideas and essential information, removing any extraneous language.\n 3. Strictly rely on the provided text without adding external information.\n 4. Format the report in paragraphs for easy understanding.\n 5. Conclude with “[End of Notes, Message #X],” where “X” represents the total number of messages I’ve sent. Increment the message counter with each new message.\n 6. Use English for technical terms, industry terminology, proper nouns, and species names.