import geopandas as gpd
import matplotlib.pyplot as plt
from geopy.geocoders import Nominatim
import requests
from bs4 import BeautifulSoup
import re
from tqdm import tqdm
from shapely.geometry import Point
import json
import pandas as pd
import numpy as np
import rasterio
from rasterio.warp import calculate_default_transform, reproject, Resampling
from sklearn.linear_model import LinearRegression
import warnings
from scipy.spatial import cKDTree
from rasterio.transform import from_origin
from rasterio.features import geometry_mask
from scipy.ndimage import gaussian_filter
from scipy.interpolate import griddata, Rbf
from rasterio.transform import array_bounds
import os
import rasterio.mask
from rasterio.crs import CRS

os.environ['PROJ_LIB'] = r'C:\Users\Lenovo\Documents\conda\Library\share\proj'

warnings.filterwarnings("ignore")

# Keywords to remove
keywords_to_remove = [
    r"\(centrum\)", "rondo", "most", "Obwodnica", "obwodnica I", "obwodnica II", "obwodnica",
    "- Zawiszyn", "OUD Węzeł", "PPO", "Węzeł", "N \(wąwóz\)", "S \(most\)", "stacja", "z pomiarów", "min", "max", "średnia"
]

def clean_station_name(station_name):
    pattern = re.compile("|".join(keywords_to_remove), re.IGNORECASE)
    cleaned_name = pattern.sub("", station_name).strip()
    return cleaned_name

def get_masovian_boundary():
    url = "https://raw.githubusercontent.com/ppatrzyk/polska-geojson/master/wojewodztwa/wojewodztwa-medium.geojson"
    # Fetch the content using requests
    response = requests.get(url)
    if response.status_code == 200:
        data = response.json()
        # Set the CRS to EPSG:4326 when creating the GeoDataFrame
        gdf = gpd.GeoDataFrame.from_features(data["features"], crs="EPSG:4326")
        masovian = gdf[gdf['nazwa'] == 'mazowieckie']
        return masovian
    else:
        print(f"Error fetching GeoJSON data: {response.status_code}")
        return None

# Global variable for Masovian boundary
masovian_boundary = get_masovian_boundary()

def is_in_masovian(lat, lon):
    point = gpd.GeoSeries([Point(lon, lat)], crs="EPSG:4326")
    masovian_geom = masovian_boundary.to_crs(epsg=2180).reset_index(drop=True)
    point_projected = point.to_crs(epsg=2180)
    return masovian_geom.contains(point_projected.buffer(100)).values[0]

def fetch_traxelektronik_data():
    url = 'https://www.traxelektronik.pl/pogoda/zbiorcza.php?RejID=10'
    response = requests.get(url)
    soup = BeautifulSoup(response.text, 'html.parser')

    stations = []
    temperatures = []
    
    table_rows = soup.find_all('tr')[2:]

    for row in table_rows:
        columns = row.find_all('td')
        if len(columns) > 1:
            station = columns[0].get_text(strip=True)
            temperature = columns[1].get_text(strip=True)
            if temperature != "-":
                cleaned_station = clean_station_name(station)
                stations.append(cleaned_station)
                temperatures.append(temperature)

    print(f"Fetched {len(stations)} stations with valid temperature data from Traxelektronik.")
    return stations, temperatures

def fetch_netatmo_data():
    url = "https://api.netatmo.com/api/getpublicdata"
    params = {
        "lat_ne": 53,
        "lon_ne": 22,
        "lat_sw": 51,
        "lon_sw": 19,
        "required_data": "temperature",
        "filter": "true",
        "access_token": "66e1e80975134797710422cd|130ee873128f65a974e484fa9c78921e"
    }
    
    response = requests.get(url, params=params)
    if response.status_code == 200:
        print("Successfully fetched data from Netatmo")
    else:
        print(f"Error fetching data: {response.status_code}")
    data = json.loads(response.text)
    
    stations = []
    temperatures = []
    coordinates = []
    
    for station in data.get('body', []):
        place = station.get('place', {})
        location = place.get('location')
        if location:
            lon, lat = location
            if is_in_masovian(lat, lon):
                for module, module_data in station.get('measures', {}).items():
                    if 'temperature' in module_data.get('type', []):
                        res = module_data.get('res', {})
                        if res:
                            latest_timestamp = max(res.keys())
                            temperature = res[latest_timestamp][0]
                            city = place.get('city', 'Unknown')
                            stations.append(city)
                            temperatures.append(temperature)
                            coordinates.append((lat, lon))
                            break
    
    print(f"Fetched {len(stations)} stations with valid temperature data from Netatmo in Masovian Voivodeship.")
    return stations, temperatures, coordinates

def get_coordinates(station_name, geolocator):
    try:
        location = geolocator.geocode(f"{station_name}, Masovian Voivodeship, Poland")
        if location:
            if is_in_masovian(location.latitude, location.longitude):
                print(f"Geocoded '{station_name}' to {location.latitude}, {location.longitude} (in Masovian).")
                return (location.latitude, location.longitude), False
            else:
                print(f"'{station_name}' is not in Masovian Voivodeship.")
                return None, False
        print(f"Failed to geocode '{station_name}'.")
        return None, False
    except Exception as e:
        print(f"Error geocoding {station_name}: {e}")
        return None, False

def clean_temperature(temp):
    cleaned_temp = re.sub(r'[↓↑\s]', '', temp)
    try:
        return float(cleaned_temp)
    except ValueError:
        return None

def remove_nearby_duplicates(trax_coords, trax_temperatures, netatmo_coords, netatmo_temperatures, distance_threshold=0.01):
    trax_points = np.array([(lon, lat) for station, (lat, lon) in trax_coords.items()])
    netatmo_points = np.array([(lon, lat) for lat, lon in netatmo_coords])
    trax_tree = cKDTree(trax_points)

    netatmo_filtered_coords = []
    netatmo_filtered_temperatures = []

    for netatmo_point, netatmo_temp in zip(netatmo_points, netatmo_temperatures):
        distance, index = trax_tree.query(netatmo_point)
        if distance > distance_threshold:
            netatmo_filtered_coords.append(tuple(netatmo_point))
            netatmo_filtered_temperatures.append(netatmo_temp)

    return netatmo_filtered_coords, netatmo_filtered_temperatures

def plot_stations_with_boundary_and_interpolation(trax_stations, trax_temperatures, trax_coords,
                                                  netatmo_stations, netatmo_temperatures, netatmo_coords):
    trax_filtered_stations = []
    trax_filtered_temperatures = []
    trax_geometries = []

    # Filter and clean Traxelektronik data
    for station, temperature in zip(trax_stations, trax_temperatures):
        cleaned_station = clean_station_name(station)
        cleaned_temperature = clean_temperature(temperature)
        if station in trax_coords and cleaned_temperature is not None:
            lat, lon = trax_coords[station]
            trax_filtered_stations.append(cleaned_station)
            trax_filtered_temperatures.append(cleaned_temperature)
            trax_geometries.append(Point(lon, lat))

    # Create GeoDataFrame for Traxelektronik data
    trax_gdf = gpd.GeoDataFrame({
        'Station': trax_filtered_stations,
        'Temperature': trax_filtered_temperatures,
        'Source': 'Traxelektronik'
    }, geometry=trax_geometries, crs="EPSG:4326")

    # Handle Netatmo data
    netatmo_filtered_coords = []
    netatmo_filtered_temperatures = []
    netatmo_filtered_stations = []

    for station, temperature, coord in zip(netatmo_stations, netatmo_temperatures, netatmo_coords):
        if isinstance(temperature, (int, float)) and coord is not None:
            netatmo_filtered_coords.append(coord)
            netatmo_filtered_temperatures.append(temperature)
            netatmo_filtered_stations.append(station)

    if len(netatmo_filtered_coords) > 0:
        netatmo_geometries = [Point(lon, lat) for lat, lon in netatmo_filtered_coords]
        netatmo_gdf = gpd.GeoDataFrame({
            'Station': netatmo_filtered_stations,
            'Temperature': netatmo_filtered_temperatures,
            'Source': 'Netatmo'
        }, geometry=netatmo_geometries, crs="EPSG:4326")
    else:
        netatmo_gdf = gpd.GeoDataFrame(columns=['Station', 'Temperature', 'Source', 'geometry'], crs="EPSG:4326")

    # Read and clip DEM
    dem_data, dem_transform = read_and_clip_dem(masovian_boundary)

    # Ensure geometries are in EPSG:4326
    trax_gdf_dem_crs = trax_gdf.to_crs("EPSG:4326")
    netatmo_gdf_dem_crs = netatmo_gdf.to_crs("EPSG:4326")

    # Get elevation at station points using dem_data and dem_transform
    trax_elevations = get_elevation_at_points(
        trax_gdf_dem_crs.geometry,
        dem_data=dem_data,
        dem_transform=dem_transform
    )
    netatmo_elevations = get_elevation_at_points(
        netatmo_gdf_dem_crs.geometry,
        dem_data=dem_data,
        dem_transform=dem_transform
    )

    # Add elevation to the GeoDataFrames
    trax_gdf['Elevation'] = trax_elevations
    netatmo_gdf['Elevation'] = netatmo_elevations

    # Combine GeoDataFrames
    stations_gdf = gpd.GeoDataFrame(pd.concat([trax_gdf, netatmo_gdf], ignore_index=True))
    stations_gdf.crs = "EPSG:4326"
    stations_gdf = stations_gdf.dropna(subset=['Temperature', 'Elevation'])

    # Extract coordinates
    stations_gdf['X'] = stations_gdf.geometry.x
    stations_gdf['Y'] = stations_gdf.geometry.y

    # Prepare data for regression
    X = stations_gdf[['X', 'Y', 'Elevation']]
    y = stations_gdf['Temperature']

    # Fit linear regression model
    model = LinearRegression()
    model.fit(X, y)

    # Predict temperatures and compute residuals
    stations_gdf['Predicted_Temperature'] = model.predict(X)
    stations_gdf['Residual'] = stations_gdf['Temperature'] - stations_gdf['Predicted_Temperature']

    # Remove duplicates by averaging residuals at duplicate locations
    data = pd.DataFrame({
        'X': stations_gdf['X'],
        'Y': stations_gdf['Y'],
        'Residual': stations_gdf['Residual']
    })
    data = data.groupby(['X', 'Y'], as_index=False).mean()
    unique_points = data[['X', 'Y']].values
    unique_residuals = data['Residual'].values

    # Create grid in EPSG:4326
    x_min, y_min, x_max, y_max = masovian_boundary.total_bounds
    grid_spacing = 0.01  # Adjust as needed (in degrees)
    x_coords = np.arange(x_min, x_max + grid_spacing, grid_spacing)
    y_coords = np.arange(y_min, y_max + grid_spacing, grid_spacing)
    grid_x, grid_y = np.meshgrid(x_coords, y_coords)

    # Flatten grid for processing
    grid_points = np.vstack((grid_x.ravel(), grid_y.ravel())).T
    xs = grid_points[:, 0]
    ys = grid_points[:, 1]

    # Compute rows and columns in DEM
    rows, cols = rasterio.transform.rowcol(dem_transform, xs, ys)

    # Convert rows and cols to NumPy arrays
    rows = np.array(rows)
    cols = np.array(cols)

    # Handle out-of-bounds indices
    valid_mask = (
        (rows >= 0) & (rows < dem_data.shape[0]) &
        (cols >= 0) & (cols < dem_data.shape[1])
    )

    # Initialize elevations array
    elevations = np.full(xs.shape, np.nan)

    # Assign elevations where valid
    elevations[valid_mask] = dem_data[rows[valid_mask], cols[valid_mask]]

    # Prepare grid dataframe
    grid_df = pd.DataFrame({
        'X': xs,
        'Y': ys,
        'Elevation': elevations
    })
    grid_df = grid_df.dropna(subset=['Elevation'])

    # Predict temperatures at grid points
    grid_df['Predicted_Temperature'] = model.predict(grid_df[['X', 'Y', 'Elevation']])

    # Use RBF interpolation with a different function
    rbf_func = Rbf(unique_points[:, 0], unique_points[:, 1], unique_residuals, function='thin_plate')
    grid_df['Residual'] = rbf_func(grid_df['X'], grid_df['Y'])

    # Final temperature estimation
    grid_df['Temperature'] = grid_df['Predicted_Temperature'] + grid_df['Residual']

    # Map temperatures back to grid array
    grid_temperature = np.full(grid_x.shape, np.nan)
    xi = ((grid_df['X'] - x_min) / grid_spacing).astype(int)
    yi = ((y_max - grid_df['Y']) / grid_spacing).astype(int)  # Note y_max - Y for correct indexing
    grid_temperature[yi, xi] = grid_df['Temperature']

    # Apply Gaussian smoothing to the temperature grid
    grid_temperature = gaussian_filter(grid_temperature, sigma=1, mode='nearest')

    # Create affine transform for the grid
    transform = from_origin(x_min, y_max, grid_spacing, grid_spacing)

    # Create mask
    masovian_shape = masovian_boundary.geometry.unary_union
    mask = geometry_mask([masovian_shape],
                         out_shape=grid_temperature.shape,
                         transform=transform,
                         invert=False)  # Mask outside the shape

    # Apply mask to grid_temperature
    grid_temperature = np.ma.array(grid_temperature, mask=mask)

    # Read and clip the DEM data for plotting
    with rasterio.open('masovian_dem.tif') as dem_src:
        # Reproject Masovian boundary to DEM CRS if necessary
        if masovian_boundary.crs != dem_src.crs:
            masovian_boundary_dem_crs = masovian_boundary.to_crs(dem_src.crs)
        else:
            masovian_boundary_dem_crs = masovian_boundary

        # Clip the DEM to the Masovian boundary
        dem_plot_data, dem_plot_transform = rasterio.mask.mask(
            dem_src, masovian_boundary_dem_crs.geometry, crop=True, filled=True, nodata=np.nan
        )

        # Read the first band (assuming single-band DEM)
        dem_plot_data = dem_plot_data[0]  # Since mask returns data as (bands, rows, cols)

        # Calculate the extent of the clipped DEM for plotting
        dem_left, dem_top = dem_plot_transform * (0, 0)
        dem_right, dem_bottom = dem_plot_transform * (dem_plot_data.shape[1], dem_plot_data.shape[0])
        dem_extent = [dem_left, dem_right, dem_bottom, dem_top]

    # Plotting
    fig, ax = plt.subplots(figsize=(15, 15))

    # Plot DEM data as background using gray colormap
    dem_img = ax.imshow(dem_plot_data, extent=dem_extent, cmap='gray', origin='upper')

    # Plot interpolated temperature grid
    extent = (x_min, x_max, y_min, y_max)
    img = ax.imshow(grid_temperature, extent=extent, origin='upper', cmap='RdBu_r', alpha=0.6)

    # Plot Masovian Voivodeship boundary
    masovian_boundary.boundary.plot(ax=ax, color='black', linewidth=2)

    # Plot stations
    stations_gdf.plot(ax=ax, color='black', marker='o', markersize=50, label='Stations')

    # Add colorbar and labels
    cbar = fig.colorbar(img, ax=ax, label="Temperature (°C)")
    ax.set_title("Temperature Interpolation in Masovian Voivodeship", fontsize=16)
    ax.legend()
    ax.set_xlabel("Longitude")
    ax.set_ylabel("Latitude")

    plt.savefig('interpolated_with_dem2.png', dpi=300, bbox_inches='tight')
    plt.show()

    print(f"Temperature interpolation plot created successfully with DEM clipped to Masovian boundary and in grayscale.")

def get_elevation_at_points(geometry, dem_data=None, dem_transform=None):
    # geometry: GeoSeries or list of Points (assumed to be in the DEM's CRS)
    # Provide dem_data and dem_transform
    from rasterio.transform import rowcol

    if dem_data is not None and dem_transform is not None:
        # Use DEM data and transform provided in memory
        elevations = []
        for point in geometry:
            x, y = point.x, point.y
            try:
                row, col = rowcol(dem_transform, x, y)
                elevation = dem_data[row, col]
                elevations.append(elevation)
            except IndexError:
                elevations.append(np.nan)
        return elevations
    else:
        raise ValueError("Provide dem_data and dem_transform.")

def read_and_clip_dem(masovian_boundary):
    dem_path = 'masovian_dem.tif'
    # Open the DEM without attempting to parse the CRS
    with rasterio.open(dem_path) as src:
        # Since our DEM is already in EPSG:4326, print a confirmation
        print("Assuming DEM is in EPSG:4326; skipping reprojection.")
        # Read the DEM data and transform
        dem_data = src.read(1, masked=True)
        dem_transform = src.transform
    return dem_data, dem_transform

# Main execution flow
if __name__ == "__main__":
    # Fetch Traxelektronik data
    trax_stations, trax_temperatures = fetch_traxelektronik_data()

    # Geocode Traxelektronik stations
    geolocator = Nominatim(user_agent="geoapi")
    trax_coords = {}

    progress_bar = tqdm(total=len(trax_stations), desc="Geocoding Traxelektronik Stations", unit="station")
    
    for station in trax_stations:
        cleaned_station = clean_station_name(station)
        coords, was_cleaned = get_coordinates(cleaned_station, geolocator)
        if coords:
            trax_coords[station] = coords
        progress_bar.update(1)
    
    progress_bar.close()

    # Fetch Netatmo data
    netatmo_stations, netatmo_temperatures, netatmo_coords = fetch_netatmo_data()

    # Plot all stations with interpolation
    plot_stations_with_boundary_and_interpolation(trax_stations, trax_temperatures, trax_coords, netatmo_stations, netatmo_temperatures, netatmo_coords)

Right now this one, specifically the DEM overlay in this script causes interpolation data to darken. Can you make so DEM data won't be overlayed in that method, it will apply a friendly-like, modern overlay to the interpolation data that won't cause any changes for the interpolation layer?