Pašalić scored the winning penalty in the 2016 Supercoppa Italiana against Juventus, bringing Milan its first major trophy since 2011 after the regular match finished in a 1–1 draw (4–5 penalties). On 8 February 2017, Pašalić scored an 89th-minute winner against Bologna in Milan's 1–0 away win. On 2 April, Pašalić scored the equalizer in Milan's 1–1 away draw with Pescara.