Czisny began the season at the 2006 Skate Canada International where she placed fourth. She also competed at the 2006 Cup of Russia in November. At the 2007 U.S. Championships she was in fifth after the short program, but went on to win the free skate to win the bronze medal and the final U.S. spot to the 2007 World Championships in Tokyo, Japan. At the World Championships, she finished 15th.