After the destruction of the original church by the 1679 Yerevan earthquake, S. Hakob was reconstructed through the donations of Hakobjan, a wealthy resident of Tbilisi. While serving as a seat of the bishop in 1868, the churchyard housed the diocesan school named after St. Sahak Partev, under the administration of Mesrop Archimandrite Smbatyants. During the Soviet period, the church was locked and converted into a storehouse. It resumed functioning once again in 1990.