Aghjots Vank was sacked by the Persians in 1603 and restored soon after. It was destroyed again in the Earthquake of 1679 that destroyed the nearby monastery of Havuts Tar and the pagan temple of Garni. The monastery was despoiled again in the 18th century and permanently ruined during the Armenian–Tatar massacres of 1905–1907. It now sits in ruins within the Khosrov State Reserve.