On 16 June, when La Liga restarted after a three-month hiatus due to the COVID-19 pandemic, Kroos scored Real Madrid's first official goal at the Alfredo Di Stéfano Stadium in just four minutes in an eventual 3–1 win over Eibar. One month later, Real Madrid went on a 10 game winning run and won the 2019–20 La Liga with Kroos featuring in all 11 matches post lockdown. On 8 August, Kroos' season came to an end as City eliminated Madrid in the Champions League Round of 16 (4–2 on aggregate). Despite a disappointing end to the season, this was Kroos' most prolific season in White netting six goals across all competitions.