In 1948, PAOK won the Macedonia Championship for second time in history, and then participated in the final phase of the Panhellenic Championship where they were ranked 3rd. PAOK footballers dedicated the title to the memory of team captain, Thrasyvoulos Panidis, who had lost his life (18 February 1948) in the civil war few days before. Panidis played for PAOK since 1930 and had 122 appearances. In 1950, they emerged once again champions of Macedonia, and the following year (1950–51), the team reached for second time the final of the Greek Cup, but lost 4–0 to Olympiacos at Apostolos Nikolaidis Stadium.