Prandelli began his managing career as youth team coach for Atalanta, achieving excellent results from 1990 to 1997, save for a seven-months parenthesis – from November 1993 to June 1994 – in which he served as caretaker for the first team, then relegated to Serie B. After a poor 1997–98 Serie A campaign as Lecce head coach ended in a sacking in January 1998, Prandelli headed Hellas Verona for two seasons, leading the "gialloblu" to an immediate promotion to Serie A, and then to a solid ninth-place finish the next year. He later spent two years with Parma.