At the 2013 Skate America, Machida won his second GP title. He placed first in the short and free programs, setting personal bests in both and winning by 25 points over second-place finisher, Adam Rippon of the United States. At 2013 Rostelecom Cup, Machida was second after the short program behind Maxim Kovtun of Russia. However, he won the free skate by over 25 points to win the competition – over 16 points ahead of Kovtun. This meant that he qualified for the Grand Prix Final in second overall, behind Patrick Chan of Canada. At the Grand Prix Final he recovered from a rough short program to skate a very strong long program, and finish 4th. He would finish 2nd at the 2013–14 Japan Figure Skating Championships, securing a spot on the Japanese Olympic and World teams for the first time.