He later also coached a number of other Serie A teams throughout his career, including Genoa and Inter: in the 1990–91 season, Bagnoli took Genoa to fourth place in the final league standings in his first year in charge; it was the team's best finishing position in the top Italian division for more than 50 years. The following season, he helped Genoa to the UEFA Cup semifinals, only to lose out to the eventual champions Ajax. He later helped Inter to a second-place finish in the league during the 1992–93 season; Bagnoli's second season at the club was less successful, however, and Inter's poor results in the league eventually led to his dismissal, after which he retired.