However, after a series of injuries that affected his career, Marcos lost his place in the team after the World Cup. He made only four more international appearances after the World Cup, and was left out of Brazil's squad for the 2003 FIFA Confederations Cup and the 2004 Copa América. In 2005, he was called again and included in the squad for the 2005 FIFA Confederations Cup. He made one appearance in the tournament, starting in a 2–2 draw against Japan during the group stage, which turned out to be his last appearance for Brazil.