Baggio maintained a high level of performance under new coach Gianni De Biasi. Baggio managed 12 goals and 9 assists during the 2002–03 season, helping Brescia to an eighth-place finish and another UEFA Intertoto Cup spot. He scored his 300th career goal from a penalty on 15 December 2002, in Brescia's 3–1 home victory over Perugia, also setting-up one of Igli Tare's goals.