Quartermaster Harbor was named by Charles Wilkes during the Wilkes Expedition of 1838-1842. Wilkes chose the name because he had named a great number of other features in the vicinity for quartermasters and other petty officers of the expedition. Places in the area named for quartermasters include Piner, Neill, Dalco, Sanford, Southworth, Williams, Henry, Pully, Robinson, and Henderson.