Günter Blobel was born in Waltersdorf in the Prussian Province of Lower Silesia, then located in eastern Germany. In January 1945 his family fled from native Silesia to Dresden to escape from the advancing Red Army. During the bombing of Dresden, Blobel, then 8, stayed with his family at a relative's farm to the west of the city. After the war, Blobel grew up and attended gymnasium in the Saxon town of Freiberg. He studied medicine and graduated from the University of Tübingen in 1960. After two years service in a medical internship, he moved to Madison, Wisconsin, following an older brother, enrolling in the University of Wisconsin–Madison and, joining the lab of Van R. Potter for his graduate work. Blobel matriculated in 1967 with a Ph.D., then took up a professorship in microbiology at the University.