From 2010, until 2016, Zeneli has been part of Sweden at youth international level, respectively has been part of the U17, U19 and U21 teams and he with these teams played 35 matches and scored 7 goals. On 2 June 2015, he was named as part of the Sweden U21's 23-man squad for the 2015 UEFA European Under-21 Championship in Czech Republic, where was declared the champion even though he was an unused substitute in those matches.