At the start of the 2013–14 season, Starke made his first appearance of the season against Borussia Dortmund in the DFL-Supercup, where he conceded four goals, in a 4–2 defeat. Starke continued to be a second choice goalkeeper for the side behind Neuer for most of the 2013–14 season. On 23 February 2014, he made his first appearance of the season, in a 4–0 win against Hannover 96. A month later on 29 March 2014, Starke made his third appearance of the season and conceded three goals, as Bayern Munich drew 3–3 against his former club, TSG 1899 Hoffenheim. However, he suffered an elbow injury during training that kept him out for the rest of the 2013–14 season. Despite this, Starke was a member of Bayern Munich squad that won the Bundesliga, FIFA Club World Cup, UEFA Super Cup and DFB-Pokal. In his second season at Bayern Munich, he went on to make three appearances in all competitions.