The GT-One would race only once more, a single entrant appearing in the 1999 Le Mans Fuji 1000km. Although the race mostly consisted of Japanese teams, thus leaving out most of the manufacturers that had competed at Le Mans, Toyota still had to compete against rival Nissan, who also entered their R391. In the end the GT-One would fall short once again, finishing 2nd and only one lap behind the winning R391. However, Toyota won the LMGTP class (the R391 being an LMP), which would have granted them automatic entry to 2000 24 Hours of Le Mans had they continued the GT-One program.