Rakitić began the 2012–13 La Liga season by providing an assist in the opening match against Getafe. On 12 September, he provided another assist for Piotr Trochowski at home in a 1–0 win over Real Madrid. He scored his first goal of the season on Matchday 5 against Deportivo de La Coruña. Rakitić scored two goals in the opening 20 minutes of the second Seville derby of the season against cross-city rivals Real Betis. This was his third goal of the season against Sevilla's city rivals, given the fact that he had also scored in the first Seville derby of the season, when Sevilla celebrated a 5–1 victory. During the match against Real Sociedad, Rakitić added two goals to his tally, however, the second one was an own goal, tying the match at 1–1 after he scored the first goal to give his club a 1–0 lead. Until the end of the season, he made total of 42 appearances for the club and scored 12 goals for the team, three coming in the Copa del Rey. He also finished the season providing ten league assists. Statistics showed that Rakitić created 100 chances in total, a sum ranking fourth across all players in Europe that season.