Wilson opened the 2016–17 season with 11 straight defeats, before beating Dechawat Poomjaeng 4–2 at the Scottish Open. He was defeated 4–1 by Liang Wenbo in the second round. Wilson recorded a 10–6 victory over Kurt Maflin in the first round of World Championship qualifying, before losing 10–7 to Rory McLeod and was relegated from the tour after not getting past the third round of both Q School events.