; LLVM IR from fritzsedlazeck/SURVIVOR :: src/snp_overlap (Overlap_snps)

; Unoptimized IR (clang -disable-llvm-passes):
target datalayout = "e-m:e-p270:32:32-p271:32:32-p272:64:64-i64:64-i128:128-f80:128-n8:16:32:64-S128"
target triple = "x86_64-unknown-linux-gnu"

; Function Attrs: mustprogress uwtable
define dso_local void @_Z11parse_entryPcRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERi(ptr noundef %0, ptr noundef nonnull align 8 dereferenceable(32) %1, ptr noundef nonnull align 4 dereferenceable(4) %2) #0 {
  %4 = alloca ptr, align 8
  %5 = alloca ptr, align 8
  %6 = alloca ptr, align 8
  %7 = alloca i64, align 8
  store ptr %0, ptr %4, align 8, !tbaa !5
  store ptr %1, ptr %5, align 8, !tbaa !5
  store ptr %2, ptr %6, align 8, !tbaa !5
  call void @llvm.lifetime.start.p0(i64 8, ptr %7) #3
  store i64 13, ptr %7, align 8, !tbaa !9
  br label %8

8:                                                ; preds = %15, %3
  %9 = load ptr, ptr %4, align 8, !tbaa !5
  %10 = load i64, ptr %7, align 8, !tbaa !9
  %11 = getelementptr inbounds i8, ptr %9, i64 %10
  %12 = load i8, ptr %11, align 1, !tbaa !11
  %13 = sext i8 %12 to i32
  %14 = icmp ne i32 %13, 44
  br i1 %14, label %15, label %24

15:                                               ; preds = %8
  %16 = load ptr, ptr %4, align 8, !tbaa !5
  %17 = load i64, ptr %7, align 8, !tbaa !9
  %18 = getelementptr inbounds i8, ptr %16, i64 %17
  %19 = load i8, ptr %18, align 1, !tbaa !11
  %20 = load ptr, ptr %5, align 8, !tbaa !5
  %21 = call noundef nonnull align 8 dereferenceable(32) ptr @_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEpLEc(ptr noundef nonnull align 8 dereferenceable(32) %20, i8 noundef signext %19)
  %22 = load i64, ptr %7, align 8, !tbaa !9
  %23 = add i64 %22, 1
  store i64 %23, ptr %7, align 8, !tbaa !9
  br label %8, !llvm.loop !12

24:                                               ; preds = %8
  br label %25

25:                                               ; preds = %32, %24
  %26 = load ptr, ptr %4, align 8, !tbaa !5
  %27 = load i64, ptr %7, align 8, !tbaa !9
  %28 = getelementptr inbounds i8, ptr %26, i64 %27
  %29 = load i8, ptr %28, align 1, !tbaa !11
  %30 = sext i8 %29 to i32
  %31 = icmp ne i32 %30, 61
  br i1 %31, label %32, label %35

32:                                               ; preds = %25
  %33 = load i64, ptr %7, align 8, !tbaa !9
  %34 = add i64 %33, 1
  store i64 %34, ptr %7, align 8, !tbaa !9
  br label %25, !llvm.loop !14

35:                                               ; preds = %25
  %36 = load i64, ptr %7, align 8, !tbaa !9
  %37 = add i64 %36, 1
  store i64 %37, ptr %7, align 8, !tbaa !9
  %38 = load ptr, ptr %4, align 8, !tbaa !5
  %39 = load i64, ptr %7, align 8, !tbaa !9
  %40 = getelementptr inbounds i8, ptr %38, i64 %39
  %41 = call i32 @atoi(ptr noundef %40) #4
  %42 = load ptr, ptr %6, align 8, !tbaa !5
  store i32 %41, ptr %42, align 4, !tbaa !15
  call void @llvm.lifetime.end.p0(i64 8, ptr %7) #3
  ret void
}

; Function Attrs: nocallback nofree nosync nounwind willreturn memory(argmem: readwrite)
declare void @llvm.lifetime.start.p0(i64 immarg, ptr nocapture) #1

; Function Attrs: mustprogress uwtable
declare noundef nonnull align 8 dereferenceable(32) ptr @_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEpLEc(ptr noundef nonnull align 8 dereferenceable(32), i8 noundef signext) #0 align 2

; Function Attrs: inlinehint mustprogress nounwind willreturn memory(read) uwtable
declare i32 @atoi(ptr noundef nonnull) #2

; Function Attrs: nocallback nofree nosync nounwind willreturn memory(argmem: readwrite)
declare void @llvm.lifetime.end.p0(i64 immarg, ptr nocapture) #1

attributes #0 = { mustprogress uwtable "min-legal-vector-width"="0" "no-trapping-math"="true" "stack-protector-buffer-size"="8" "target-cpu"="x86-64" "target-features"="+cmov,+cx8,+fxsr,+mmx,+sse,+sse2,+x87" "tune-cpu"="generic" }
attributes #1 = { nocallback nofree nosync nounwind willreturn memory(argmem: readwrite) }
attributes #2 = { inlinehint mustprogress nounwind willreturn memory(read) uwtable "min-legal-vector-width"="0" "no-trapping-math"="true" "stack-protector-buffer-size"="8" "target-cpu"="x86-64" "target-features"="+cmov,+cx8,+fxsr,+mmx,+sse,+sse2,+x87" "tune-cpu"="generic" }
attributes #3 = { nounwind }
attributes #4 = { nounwind willreturn memory(read) }

!llvm.module.flags = !{!0, !1, !2, !3}
!llvm.ident = !{!4}

!0 = !{i32 1, !"wchar_size", i32 4}
!1 = !{i32 8, !"PIC Level", i32 2}
!2 = !{i32 7, !"PIE Level", i32 2}
!3 = !{i32 7, !"uwtable", i32 2}
!4 = !{!"clang version 19.1.0 (git@github.com:llvm/llvm-project.git a4bf6cd7cfb1a1421ba92bca9d017b49936c55e4)"}
!5 = !{!6, !6, i64 0}
!6 = !{!"any pointer", !7, i64 0}
!7 = !{!"omnipotent char", !8, i64 0}
!8 = !{!"Simple C++ TBAA"}
!9 = !{!10, !10, i64 0}
!10 = !{!"long", !7, i64 0}
!11 = !{!7, !7, i64 0}
!12 = distinct !{!12, !13}
!13 = !{!"llvm.loop.mustprogress"}
!14 = distinct !{!14, !13}
!15 = !{!16, !16, i64 0}
!16 = !{!"int", !7, i64 0}


; Optimized IR (opt -passes='default<O3>'):
target datalayout = "e-m:e-p270:32:32-p271:32:32-p272:64:64-i64:64-i128:128-f80:128-n8:16:32:64-S128"
target triple = "x86_64-unknown-linux-gnu"

; Function Attrs: mustprogress uwtable
define dso_local void @_Z11parse_entryPcRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERi(ptr nocapture noundef readonly %0, ptr noundef nonnull align 8 dereferenceable(32) %1, ptr nocapture noundef nonnull writeonly align 4 dereferenceable(4) %2) local_unnamed_addr #0 {
  %4 = getelementptr inbounds i8, ptr %0, i64 13
  %5 = load i8, ptr %4, align 1, !tbaa !5
  %.not13 = icmp eq i8 %5, 44
  br i1 %.not13, label %.preheader.preheader, label %.lr.ph

.lr.ph:                                           ; preds = %3, %.lr.ph
  %6 = phi i8 [ %10, %.lr.ph ], [ %5, %3 ]
  %.014 = phi i64 [ %8, %.lr.ph ], [ 13, %3 ]
  %7 = tail call noundef nonnull align 8 dereferenceable(32) ptr @_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEpLEc(ptr noundef nonnull align 8 dereferenceable(32) %1, i8 noundef signext %6)
  %8 = add i64 %.014, 1
  %9 = getelementptr inbounds i8, ptr %0, i64 %8
  %10 = load i8, ptr %9, align 1, !tbaa !5
  %.not = icmp eq i8 %10, 44
  br i1 %.not, label %.preheader.preheader, label %.lr.ph, !llvm.loop !8

.preheader.preheader:                             ; preds = %.lr.ph, %3
  %.1.ph = phi i64 [ 13, %3 ], [ %8, %.lr.ph ]
  br label %.preheader

.preheader:                                       ; preds = %.preheader.preheader, %.preheader
  %.1 = phi i64 [ %13, %.preheader ], [ %.1.ph, %.preheader.preheader ]
  %11 = getelementptr inbounds i8, ptr %0, i64 %.1
  %12 = load i8, ptr %11, align 1, !tbaa !5
  %.not12 = icmp eq i8 %12, 61
  %13 = add i64 %.1, 1
  br i1 %.not12, label %14, label %.preheader, !llvm.loop !10

14:                                               ; preds = %.preheader
  %15 = getelementptr inbounds i8, ptr %0, i64 %.1
  %16 = getelementptr i8, ptr %15, i64 1
  %17 = tail call i32 @atoi(ptr nocapture noundef %16) #2
  store i32 %17, ptr %2, align 4, !tbaa !11
  ret void
}

; Function Attrs: mustprogress uwtable
declare noundef nonnull align 8 dereferenceable(32) ptr @_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEpLEc(ptr noundef nonnull align 8 dereferenceable(32), i8 noundef signext) local_unnamed_addr #0 align 2

; Function Attrs: inlinehint mustprogress nofree nounwind willreturn memory(read) uwtable
declare i32 @atoi(ptr nocapture noundef nonnull) local_unnamed_addr #1

attributes #0 = { mustprogress uwtable "min-legal-vector-width"="0" "no-trapping-math"="true" "stack-protector-buffer-size"="8" "target-cpu"="x86-64" "target-features"="+cmov,+cx8,+fxsr,+mmx,+sse,+sse2,+x87" "tune-cpu"="generic" }
attributes #1 = { inlinehint mustprogress nofree nounwind willreturn memory(read) uwtable "min-legal-vector-width"="0" "no-trapping-math"="true" "stack-protector-buffer-size"="8" "target-cpu"="x86-64" "target-features"="+cmov,+cx8,+fxsr,+mmx,+sse,+sse2,+x87" "tune-cpu"="generic" }
attributes #2 = { nounwind willreturn memory(read) }

!llvm.module.flags = !{!0, !1, !2, !3}
!llvm.ident = !{!4}

!0 = !{i32 1, !"wchar_size", i32 4}
!1 = !{i32 8, !"PIC Level", i32 2}
!2 = !{i32 7, !"PIE Level", i32 2}
!3 = !{i32 7, !"uwtable", i32 2}
!4 = !{!"clang version 19.1.0 (git@github.com:llvm/llvm-project.git a4bf6cd7cfb1a1421ba92bca9d017b49936c55e4)"}
!5 = !{!6, !6, i64 0}
!6 = !{!"omnipotent char", !7, i64 0}
!7 = !{!"Simple C++ TBAA"}
!8 = distinct !{!8, !9}
!9 = !{!"llvm.loop.mustprogress"}
!10 = distinct !{!10, !9}
!11 = !{!12, !12, i64 0}
!12 = !{!"int", !6, i64 0}


; Effective O3 passes: EarlyCSEPass,GVNPass,GlobalOptPass,InferFunctionAttrsPass,InstCombinePass,InstSimplifyPass,JumpThreadingPass,LCSSAPass,LICMPass,LoopRotatePass,LoopSimplifyPass,LoopUnrollPass,PostOrderFunctionAttrsPass,SROAPass,SimplifyCFGPass,TailCallElimPass