title: The B‐cell system of human mucosae and exocrine glands

text: Summary: The mucosae and exocrine glands harbour the largest activated B‐cell system of the body, amounting to some 80–90% of all immunoglobulins (Ig)‐producing cells. The major product of these immunocytes is polymeric (p)IgA (mainly dimers) with associated J chain. Both pIgA and pentameric IgM contain a binding site for the polymeric Ig receptor (pIgR), or secretory component (SC), which is a requirement for their active external transport through secretory epithelia. The pIgR/SC binding site depends on covalent incorporation of the J chain into the quaternary structure of the polymers when they are produced by the local immunocytes. This important differentiation characteristic appears to be sufficient functional justification for the J chain to be expressed also by most B cells terminating at secretory effector sites with IgD or IgG production; they probably represent a ‘spin‐off’ from sequential downstream C(H) switching on its way to pIgA expression, thus apparently reflecting a maturational stage of effector B‐cell clones compatible with homing to these sites. Observations in IgA‐deficient individuals suggest that the magnitude of this homing is fairly well maintained even when the differentiation pathway to IgA is blocked. Certain microenvironmental elements such as specific cytokines and dendritic cells appear to be required for induction of IgA synthesis, but it remains virtually unknown why this isotype normally is such a dominating product of local immunocytes and why they have such a high level of J chain expression. Also, despite the recent identification of some important requirements in terms of adhesion molecules (e.g. integrin α4β7 and MAdCAM‐1) that explain the “gut‐seeking” properties of enterically induced B cells, the origin of regionalized homing of B cells to secretory effector sites outside the gut remains elusive. Moreover, little is known about immune regulation underlying the striking disparity of both the class (IgD, IgM) and subclass (IgA1, IgA2, IgGI, IgG2) production patterns shown by local iinmttnocytes in various regions of the body, although the topical microbiota and other environmental stimuli might be important. Rational design of local vaccines will depend on better knowledge of both inductive and migratory properties of human mucosal B cells.


title: A contour‐based topographic model for hydrological and ecological applications

text: A digital model for discretizing three‐dimensional terrain into small irregularly shaped polygons or elements based on contour lines and their orthogonals is described. From this subdivision the model estimates a number of topographic attributes for each element including the total upslope contributing area, element area, slope, and aspect. This form of discretization of a catchment produces natural units for problems involving water flow as either a surface or subsurface flow phenomenon. The model therefore has wide potential application for representing the three‐dimensionality of natural terrain and water flow processes in the fields of hydrology, sedimentology, and geomorphology. Three example applications are presented and discussed. They are the prediction of zones of surface saturation, the prediction of the distribution of potential daily solar radiation, and the prediction of zones of erosion and deposition in a catchment.


Oral Abstract Sessions


docid: lhwhkada

title: Recent developments in CE and CEC of peptides

text: The article brings a comprehensive survey of recent developments and applications of high‐performance capillary electromigration methods, zone electrophoresis, ITP, IEF, affinity electrophoresis, EKC, and electrochromatography, to analysis, preparation, and physicochemical characterization of peptides. New approaches to the theoretical description and experimental verification of electromigration behavior of peptides and to methodology of their separations, such as sample preparation, adsorption suppression, and detection, are presented. Novel developments in individual CE and CEC modes are shown and several types of their applications to peptide analysis are presented: conventional qualitative and quantitative analysis, purity control, determination in biomatrices, monitoring of chemical and enzymatical reactions and physical changes, amino acid and sequence analysis, and peptide mapping of proteins. Some examples of micropreparative peptide separations are given and capabilities of CE and CEC techniques to provide important physicochemical characteristics of peptides are demonstrated.


title: Loss-of-function tolerance of enhancers in the human genome

text: Previous studies have surveyed the potential impact of loss-of-function (LoF) variants and identified LoF-tolerant protein-coding genes. However, the tolerance of human genomes to losing enhancers has not yet been evaluated. Here we present the catalog of LoF-tolerant enhancers using structural variants from whole-genome sequences. Using a conservative approach, we estimate that individual human genomes possess at least 28 LoF-tolerant enhancers on average. We assessed the properties of LoF-tolerant enhancers in a unified regulatory network constructed by integrating tissue-specific enhancers and gene-gene interactions. We find that LoF-tolerant enhancers tend to be more tissue-specific and regulate fewer and more dispensable genes relative to other enhancers. They are enriched in immune-related cells while enhancers with low LoF-tolerance are enriched in kidney and brain/neuronal stem cells. We developed a supervised learning approach to predict the LoF-tolerance of all enhancers, which achieved an area under the receiver operating characteristics curve (AUROC) of 98%. We predict 3,519 more enhancers would be likely tolerant to LoF and 129 enhancers that would have low LoF-tolerance. Our predictions are supported by a known set of disease enhancers and novel deletions from PacBio sequencing. The LoF-tolerance scores provided here will serve as an important reference for disease studies.


Morbid mystery tour: Epidemic from China is encircling globe


title: Far‐Red Fluorescent Lipid‐Polymer Probes for an Efficient Labeling of Enveloped Viruses

text: Far‐red emitting fluorescent lipid probes are desirable to label enveloped viruses, for their efficient tracking by optical microscopy inside autofluorescent cells. Most used probes are rapidly released from membranes, leading to fluorescence signal decay and loss of contrast. Here, water‐soluble lipid‐polymer probes are synthesized harboring hydrophilic or hydrophobic far‐red emitting dyes, and exhibiting enhanced brightness. They efficiently label Hepatitis C Virus pseudotyped particles (HCVpp), more stably and reproducibly than commercial probes, and a strong fluorescence signal is observed with a high contrast. Labeling with such probes do not alter virion morphology, integrity, nor infectivity. Finally, it is shown by fluorescence microscopy that these probes enable efficient tracking of labeled HCVpp inside hepatocarcinoma cells used as model hepatocytes, in spite of their autofluorescence up to 700 nm. These novel fluorescent lipid‐polymer probes should therefore enable a better characterization of early stages of infection of autofluorescent cells by enveloped viruses.


title: Attribute‐based classification of European hydrophytes and its relationship to habitat utilization

text: 1.. Here we classify selected European hydrophytes into ‘attribute groups’ based on the possession of homogenous sets of characteristics, and explore the correspondence between these attribute groups, or individual attributes, and habitat use. 2.. Non‐hierarchical clustering was used to assign 120 species to twenty groups based on a matrix of categorical scores for literature‐ and field‐derived information covering seventeen intrinsic morphological and life‐history traits. Subdivision of some of these traits produced a total of 58 attributes (i.e. modalities). The robustness of this classification was confirmed by a high rate of reclassification (92%) under multiple discriminant analysis (MDA). The phylogenetic contribution was explored using ordination methods with taxonomy at family level acting as a covariable. 3.. Our approach differed from earlier classifications based on growth or life form because we regarded growth form plasticity as a property of the species and its range of growing conditions, rather than of each individual population, and we considered additional (e.g. regenerative) traits. However, some conventional life form groups were preserved (i.e. utricularids, isoetids, hydrocharids and lemnids). 4.. Some parallels existed with established theory on terrestrial plant growth strategies, but we used strictly intrinsic attributes relevant specifically to hydrophytes and our groups could not be decomposed into three or four primary strategies. Only finer levels of partitioning appear to be of fundamental and applied ecological relevance in hydrophytes. 5.. A principal components analysis ordination based on 26 attributes related to physical habitat utilization separated species and their attribute groups along axes relating to: (a) flow, substratum grade and organic matter content, scour frequency, and sedimentation; and (b) depth, water level stability and biotic disturbance. A MDA applied to species ordination scores indicated only a modest overall correspondence between attribute groups and habitat use (54% correct reclassification). Poor reclassification was the result of intergroup overlap (indicating alternative sets of attributes for a given habitat) or high intragroup variance in habitat utilization (indicating commonality of attributes between different habitats). These results are interpreted in terms of trade‐offs between resistance and resilience traits, ‘functional plasticity’ in traits, phylogenetic dependence in some groups and methodological constraints. The predictive potential of hydrophyte groups and their limitations are discussed. 6.. Redundancy analysis revealed a highly significant correlation between traits and habitat use (P < 0.01). Our attribute matrix explained 72% of variation in physical habitat use with eight attributes (i.e. turions, anchored emergent leaves, high or low body flexibility, high root:shoot biomass ratio, free‐floating surface or free‐floating submerged growth form, and annual life history) explaining half of this variation. 7.. Most attributes were mapped in accordance with habitat template predictions, although tests were confounded by the underlying correlation between spatial and temporal heterogeneity. The main features were: (a) a trade‐off between resistance‐type traits (related to stream lining, flexibility and anchorage) in more spatially heterogenous riverine and littoral zone habitats, and resilience type traits (i.e. turions, very small body size and free‐floating growth forms) in spatially simple, rarely disturbed habitats, such as backwaters and canals; and (b) a shift from high investment competitive traits with a low reproductive output in deep stable habitats to classically ruderal and desiccation resistance traits in shallow fluctuating habitats.


SAEM Annual Meeting Abstracts


title: Seasonal and geographical distribution of cave‐dwelling bats in Romania: implications for conservation

text: Caves offer bats refuges for hibernation, breeding and other social events. Their quality is important for species distribution. The role of cave microclimate as well as other environmental factors influencing the distribution of cave‐dwelling species, is poorly known. We tested the significance of cave variables (length, temperature, elevation, occurrence of water) and geographical location for the presence of bats during hibernation and the breeding season in five regions in Romania. To detect species' environmental relationships, we used canonical correspondence analyses for winter bat aggregations and principal components analysis for maternity colonies. We analysed the factors influencing the distribution of bats by using two sets of explanatory variables reflecting cave characteristics and geographical locations. Winter aggregation was divided into three groups: (1) bat species that prefer high temperatures (Rhinolophus euryale, Myotis cappacinii) and hibernate at a low altitude; (2) species ranging from mid‐ to high elevation and low temperature (Myotis myotis/oxygnathus group); (3) species that hibernate in large, cold cave systems with a constant flow of the water (Pipistrellus pipistrellus, Nyctalus noctula, Barbastella barbastellus). Maternity colonies were divided into those that select either high (rhinolophids) or low temperatures (My. myotis/oxygnathus and Miniopterus schreibersii). The most important factors influencing the distribution of bats are the temperature in caves and their geographical location. This information was combined with IUCN's Red List data as well as with the number of individuals occurring in caves with the aim of identifying the key sites for conservation. The majority of these sites, which also constitute the refuges for vulnerable species, are located in west and south‐western Romania. Seven caves provide shelter throughout the year for 122 000 individuals of 14 species.


docid: ieaaxfuu

title: A Stable Calcium Alumanyl

text: A seven‐membered N,N′‐heterocyclic potassium alumanyl nucleophile is introduced and utilised in the metathetical synthesis of Mg−Al and Ca−Al bonded derivatives. Both species have been characterised by experimental and theoretical means, allowing a rationalisation of the greater reactivity of the heavier group 2 species implied by an initial assay of their reactivity.


title: Observations on different methods of aphid trapping

text: Cylindrical and horizontal sticky traps painted in a range of spectral colours were used to determine the flight and landing behaviour of aphids. Data are also presented on aphid catches in suction traps at two heights and in light traps. Apart from colour sensitivity (yellow versus white) there was apparently a separate response to colour which in some species varied with season. Within yellow‐sensitive species there was also a differential response to colour. With the experimental methods used, it was not possible to define mathematically the active and passive landing components on cylindrical traps. Though the active landing component was large it varied between aphid species. Most species caught on horizontal traps at ground level had been flying above 1 m. In some species the response of males to colour and their landing behaviour differed from that of viviparae and oviparae. Four years data from suction traps suggest that aphid species can be divided into three categories on the basis of the height at which they normally fly. One group, mostly tree‐feeders, always show the greatest density at a high level (12.2 m) throughout the season. The second group always have the highest density at a low level (1 m) whilst a third group of species change at a specific date each autumn from a maximum density at 1–12.2 m. Attraction to light (moth trap) appeared to be linked with the grouping of species by height of flight. The interpretation of catch data is discussed in the light of these observations.


Editor's note: Cyberplagiarism…what is it?


title: Dormancy of alpine and subalpine perennial forbs

text: Depth of dormancy of alpine and subalpine perennial forbs in autumn was investigated, which was judged by the number of days required for growth initiation at 24 °C. The depth of dormancy differed depending on Raunkiaer's life‐form and shoot habits. Chamaephytes with perennial shoot‐axes showed shallower dormancy than hemicryptophytes with annual shoot‐axes, and geophytes with annual shoot‐axes showed the deepest dormancy. The results strongly suggest that the dormancy is more endogenously controlled in forbs less hardy to freezing stress. Potential growth ability of alpine herbaceous chamaephytes in autumn is an adaptive advantage, since they utilize the short vegetative period as long as possible. All of the species with annual shoot‐axes had winter buds covered with scales. In plants with perennial shoot‐axes, percentage of winter buds covered with scales increased with increasing depth of dormancy. The results indicate that the shoot apices are well protected by bud scales in forbs with a long endogeneous‐dormant period.


title: MS‐2 and T4 phage removal in an anaerobic membrane bioreactor (AnMBR): effect of gas sparging rate

text: BACKGROUND: The enhanced removal of viruses in wastewater treatments plant is important due to concerns about public health. Bacteriophages (or phages) are often used to model the behavior of pathogenic human viruses as they are similar in size, structure and behavior. This study investigated the removal of phages MS‐2 (25 nm) and T4 (200 nm) in an anaerobic membrane bioreactor (AnMBR) with a membrane pore size of 0.4 µm. RESULTS: The membrane reactor without biomass was assessed and its log removal was 0.7 ± 0.4 log for the MS‐2 phage, and 2.3 ± 0.2 log for the T4. When anaerobic biomass was added to the reactor the log removal for both phages increased, and this was thought to be due to a complex relationship with the biofilm on the membrane. CONCLUSIONS: Overall MS‐2 rejections ranged from 1.75 up to 5.5 log, with the highest rejections observed at the highest sparging rates after extensive fouling had occurred. For T4, removal in the AnMBR ranged from 5 log up to complete removal (>log 7). © 2014 Society of Chemical Industry


title: Pathogenesis of Mouse Hepatitis Virus Infection: The Role of Nasal Epithelial Cells as a Primary Target of Low‐Virulence Virus, MHV‐S

text: The pathogenesis of mouse hepatitis virus (MHV‐S) infection in suckling and weanling mice was comparatively studied after intranasal inoculation. In sucklings, infectious virus as well as specific antigen was first detected in the nasal mucosa at 12 hr, then in the nerve cells of the olfactory bulbs. At this stage viral particles were demonstrated both in the supporting cells and olfactory cells of the nasal mucosa. In the posterior part of the brain and spinal cord, virus was detected on days 3 to 4 postinoculation when viral growth was clearly demonstrable in the liver, spleen and intestines. In weanlings too, infection was first established in the nasal mucosa, shedding infectious virus in the nasal washing until day 6 postinoculation, and later infection spread to the brain and spinal cord. In weanling mice, however, neither infectious virus nor viral antigen was detected in the liver or other visceral organs, while serum neutralizing antibody became detectable on day 5 postinoculation, increasing in titer thereafter. Histopathologically degenerative and necrotic changes were observed in the nasal mucosa and central nervous system of both age groups of animals coincidentally with the presence of viral specific antigen, while inflammatory response was much less prominent in sucklings. In the liver, spleen and intestines, however, some lesions were observed only in sucklings.


title: Infectious disease and the conservation of free‐ranging large carnivores

text: Large carnivores are of vital importance to the stability and integrity of most ecosystems, but recent declines in free‐ranging populations have highlighted the potentially devastating effect of infectious diseases on their conservation. We reviewed the literature on infectious diseases of 34 large (maximum body mass of adults >20 kg) terrestrial carnivore species, 18 of which are considered to be threatened in the wild, and examined reports of antibody prevalence (seroprevalence) and cases of infection, mortality and population decline. Of 52 diseases examined, 44% were viral, 31% bacterial and the remainder were protozoal or fungal. Many infections were endemic in carnivores and/or infected multiple taxonomic families, with the majority probably occurring via inhalation or ingestion. Most disease studies consisted of serological surveys for disease antibodies, and antibody detection tended to be widespread implying that exposure to micro‐organisms was common. Seroprevalence was higher in tropical than temperate areas, and marginally higher for infections known to occur in multiple carnivore groups. Confirmation of active infection via micro‐organism recovery was less common for ursids than other taxonomic groups. Published descriptions of disease‐induced population decline or extinction were rare, and most outbreaks were allegedly the result of direct transmission of rabies or canine distemper virus (CDV) from abundant carnivore species to less‐common large carnivores. We conclude that the threat of disease epidemics in large carnivores may be serious if otherwise lethal infections are endemic in reservoir hosts and transmitted horizontally among taxa. To prevent or mitigate future population declines, research efforts should be aimed at identifying both the diseases of potential importance to large carnivores and the ecological conditions associated with their spread and severity.


Human Milk: Immunologic‐Nutritional Relationships


Clinicopathological Conference: Fever, Productive Cough, and Tachycardia in a 22‐year‐old Asian Male


ICS 2017 Abstracts


docid: egzrcsmr

title: Losing uniqueness – shifts in carabid species composition during dry grassland and heathland succession

text: Dry sand ecosystems, such as dry grasslands and heathlands, have suffered habitat loss and degradation due to land‐use changes and are today among the most endangered habitats in Central Europe. To evaluate the impact of degradation processes on habitat quality, we investigated how succession from sparse vegetated sand ecosystems to grass‐invaded and tree‐dominated ecosystems and the environmental parameters associated with it influences carabid assemblages. We also determined to what extent typical xerophilic species assemblages still exist. Pitfall trapping at 28 study sites in northwestern Germany yielded 111 carabid species that were grouped using Kendall's W coefficient of concordance. Ordination revealed that the differences between the four species groups resulted from vegetation cover and soil humidity, indicating that carabid distribution clearly reflects degradation processes. Our results suggest that areas in which succession proceeds were unsuitable for assemblages typical of dry grasslands and heathlands. In all, 35 species are lost due to succession from dry grassland and heathland to grass‐invaded and tree‐dominated sites. We discuss implications for habitat management and restoration, since dry sand ecosystems comprise a very high number of specialized and endangered species.


Poster Session Abstracts


docid: yfvrblyf

title: The Use of Narrative Evidence and Explicit Likelihood by Decisionmakers Varying in Numeracy

text: Decisionmakers are often presented with explicit likelihood assessments (e.g., there is a 10% chance that an attack will occur over the next three months) and supporting narrative evidence in forecasting and risk communication domains. Decisionmakers are thought to rely on both numerical and narrative information to the extent that they perceive the information to be diagnostic, accurate, and trustworthy. In two studies, we explored how lay decisionmakers varying in numeracy evaluated and used likelihood assessments and narrative evidence in forecasts. Overall, the less numerate reported higher risk and likelihood perceptions. In simple probabilistic forecasts without narrative evidence, decisionmakers at all levels of numeracy were able to use the stated likelihood information, although risk perceptions of the less numerate were more affected by likelihood format. When a forecast includes narrative evidence, decisionmakers were better able to use stated likelihood in a percentage as compared to frequency or verbal formats. The more numerate used stated likelihood more in their evaluations whereas the less numerate focused more on the narrative evidence. These results have important implications for risk analysts and forecasters who need to report the results of their analyses to decisionmakers. Decisionmakers varying in numerical ability may evaluate forecasts in different ways depending on the types of information they find easiest to evaluate.


Primary pulmonary non‐Hodgkin's lymphoma: A retrospective analysis of 29 cases in a Chinese population


Clinical manifestations of combined factor V and VIII deficiency: A series of 37 cases from a single center in India


Biotechnology: Opportunities and Challenges for Developing Countries


Expression of CD1d and presence of invariant NKT cells in classical Hodgkin lymphoma


title: Dormancy and germination characteristics of herbaceous species in the seasonally dry tropics of northern Australia

text: This study investigated changes in dormancy and germination over 8 months for 23 common species (annual and perennial grasses, legumes and other dicotyledons) from herbaceous communities in northern Australia. Seeds were exposed to three storage treatments: relatively constant laboratory conditions, an oven with fluctuating temperatures similar to those found on the soil surface (25/60°C), or exposed on the soil surface at Townsville. There were wide ranges of initial levels of dormancy (9–100%), rates of change of dormancy and response to the different storage conditions showing that species with several types of dormancy characteristics are able to coexist in these communities. The general trend in dormancy levels was a decline with time with the rate of decline greatest for seeds exposed on the soil surface and least for those stored in the laboratory. The species were divided into groups based on dormancy levels in seeds on the soil surface during the late dry and mid wet seasons. The dormancy characteristics of the groups were related to the ecology of the species in the groups. There was an approximately linear increase in germination rate (i.e. a decrease in the number of days to 50% of final germination) over time for all storage treatments; rates for seeds on the soil surface increased more rapidly than those of seeds in laboratory and oven samples.


Pain rate and social circumstances rather than cumulative organ damage determine the quality of life in adults with sickle cell disease


title: Sap flow variation in selected riparian woodland species in the Okavango Delta, Botswana

text: In the tropical Okavango Delta, transpiration by trees is an important process partly responsible for maintaining the basin as a freshwater environment. Quantification of evapotranspiration from terrestrial landforms of the delta, fringed by riparian woodlands, is one of the main contributors to uncertainty in current hydrological modelling. We investigated sap flow of common trees in the distal, mid‐ and upper delta in July–August 2012, November–December 2012 and February–April 2013 using the compensation heat pulse velocity method. In the distal delta, four Diospyros mespiliformis individuals of different sizes were studied. Four trees of different species were studied in the mid‐ and upper delta. Sap flow density (SFD; flow per unit cross‐sectional area) was used as a common unit to facilitate comparison. Sap flow varied with tree size, species, season and location. It was positively correlated with tree size (r (2) = 0.67). Sap flow variation between seasons and across locations in all the species studied indicated two distinct groups. Group 1 transpired the least during the hottest season, November–December, and Group 2 the most. In Group 1, the highest average SFD was 1.17 l cm(−2 )day(−1) during July–August; in Group 2, it was 1.07 l cm(−2) day(−1) during November–December. Changes in the hydrology of the delta would negatively affect the riparian woodland.


title: Allozyme variation and genetic relationships among species in the C arex willdenowii complex (Cyperaceae)

text: A taxonomic study by Naczi, Reznicek, and Ford (American Journal of Botany, 85, 434–447, 1998) has determined that three species (Carex willdenowii, C. basiantha, and C. superata) can be recognized within the C. willdenowii complex. To determine the amount of genetic divergence within and between these species, allozyme analyses were conducted on 14 populations distributed from Pennsylvania to eastern Texas. Seventeen loci were surveyed, 13 of which were polymorphic, with all populations being polymorphic at one or more loci. Interspecific genetic identities ranged from 0.560 (C. willdenowii and C. basiantha) to 0.807 (C. basiantha and C. superata). Alleles for the isozymes Aat‐1, Dia‐1, Idh‐2, Mdh‐2, Per‐1, Pgm‐1, and Pgm‐2 served to distinguish C. willdenowii from C. basiantha and C. superata. Carex basiantha and C. superata were recognized by alleles of Mdh‐2, Pgm‐1, and Tpi‐2. The genetic identities of populations within species were high and exceeded 0.957. A caespitose growth habit and perigynia in close proximity to the staminate flowers suggest adaptations for selfing and therefore low levels of heterozygosity. Paradoxically, the values for expected heterozygosities (H (exp)) were always lower than those obtained by direct count (H (obs)): F values were highly negative, indicating heterozygous excess. Disassortative mating and selection are discussed as possible mechanisms for maintaining heterozygous excess within populations.


Analysis of the REL, BCL11A, and MYCN proto‐oncogenes belonging to the 2p amplicon in chronic lymphocytic leukemia


Procalcitonin as a biomarker to differentiate bacterial infections from engraftment syndrome following autologous hematopoietic stem cell transplantation for multiple myeloma


docid: zigmsdof

title: The assessment of human organic cation transporter 1 (hOCT1) mRNA expression in patients with chronic myelogenous leukemia is affected by the proportion of different cells types in the analyzed cell population


A specific linkage between the incidence of TP53 mutations and type of chromosomal translocations in B‐precursor acute lymphoblastic leukemia cell lines


title: Phylogenetic relationships in the Gesnerioideae (Gesneriaceae) based on nrDNA ITS and cpDNA trnL‐F and trnE‐T spacer region sequences

text: The Gesnerioideae includes most of the New World members of the Gesneriaceae family and is currently considered to include five tribes: Beslerieae, Episcieae, Gesnerieae, Gloxinieae, and Napeantheae. This study presents maximum parsimony and maximum likelihood phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacer regions (ITS), and the chloroplast DNA trnL intron, trnL‐trnF intergenic spacer region, and trnE‐trnT intergenic spacer region sequences. The ITS and cpDNA data sets strongly support the monophyly of a Beslerieae/Napeantheae clade; an Episcieae clade; a Gesnerieae clade; a Gloxinieae clade minus Sinningia, Sinningia relatives, and Gloxinia sarmentiana; and a Sinningia/Paliavana/Vanhouttea clade. This is the first study to provide strong statistical support for these tribes/clades. These analyses suggest that Sinningia and relatives should be considered as a separate tribe. Additionally, generic relationships are explored, including the apparent polyphyly of Gloxinia. Chromosome number changes are minimized on the proposed phylogeny, with the exception of the n = 11 taxa of the Gloxinieae. Scaly rhizomes appear to have been derived once in the Gloxinieae sensu stricto. The number of derivations of the inferior ovary is unclear: either there was one derivation with a reversal to a superior ovary in the Episcieae, or there were multiple independent derivations of the inferior ovary.


title: Maternal Antibodies Protect Immunoglobulin Deficient Neonatal Mice From Mouse Hepatitis Virus (MHV)‐Associated Wasting Syndrome

text: PROBLEM: Neonatal mice nursed by dams lacking immunoglobulins (Igs) may often suffer from lethal runting if raised under conventional conditions. The present study was performed in order to clarify a) the cause of the wasting syndrome and b) the protective role of antigen‐specific milk antibodies. METHOD: Ig‐deficient mouse embryos in a conventional environment were embryo‐transferred to specified pathogen free (SPF) dams. Neonatal growth, mortality, and health status of mice from both environments was recorded. Suspected presence of mouse hepatitis virus (MHV) was tested by RT‐PCR. Protective effects on neonatal mortality of milk containing different titers of anti‐MHV antibodies were investigated in cross‐fostering experiments. RESULTS: The SPF colony of Ig‐deficient mice exhibited no breeding problems, whereas Ig‐deficient neonates in the conventional environment suffered from lethal wasting syndrome. Serological screening of the mice kept in the two environments revealed that mice in the conventional room had high titers of antibodies against mouse hepatitis virus. Presence of MHV in runting neonates was confirmed by pathological examinations and RT‐nested‐PCR using MHV genome specific primers. Milk containing high titers of anti‐MHV antibodies, when provided for 8 days or more, completely prevented Ig‐deficient neonates from developing wasting syndrome in the conventional environment. CONCLUSION: These findings show that the neonatal wasting syndrome is associated with the presence of MHV and that neonates are efficiently protected by MHV‐specific antibodies in the milk.


title: Genomic investigation of piglet resilience following porcine epidemic diarrhea outbreaks

text: Porcine epidemic diarrhea virus (PEDV) belongs to the Coronaviridae family and causes malabsorptive watery diarrhea, vomiting, dehydration and imbalanced blood electrolytes in pigs. Since the 1970s, PED outbreaks have become a source of problems in pig producing countries all over the world, causing large economic losses for pig producers. Although the infection in adults is not fatal, in naïve suckling piglets mortality is close to 100%. In this study, we investigated genome‐wide differences between dead and recovered suckling piglets from commercial farms after PED outbreaks. Samples from 262 animals (156 dead and 106 recovered) belonging to several commercial lines were collected from five different farms in three different countries (USA, Canada and Germany) and genotyped with the porcine 80K SNP chip. Mean F (st) value was calculated in 1‐Mb non‐overlapping windows between dead and recovered individuals, and the results were normalized to find differences within the comparison. Seven windows with high divergence between dead and recovered were detected—five on chromosome 2, one on chromosome 4 and one on chromosome 15—in total encompassing 152 genes. Several of these genes are either under‐ or overexpressed in many virus infections, including Coronaviridae (such as SARS‐CoV). A total of 32 genes are included in one or more Gene Ontology terms that can be related to PED development, such as Golgi apparatus, as well as mechanisms generally linked to resilience or diarrhea development (cell proliferation, ion transport, ATPase activity). Taken together this information provides a first genomic picture of PEDV resilience in suckling piglets.


title: Pathologic characterization of short‐chain acyl‐CoA dehydrogenase deficiency in BALB/cByJ mice

text: BALB/cByJ mice have a deficiency of short‐chain acyl‐CoA dehydrogenase (SCAD) and are a useful model for studying the inborn errors of fatty acid metabolism which affect humans. Patients with some of these disorders present with hypoglycemia, hyperamonemia, and microvesicular fatty change of hepatocytes. In the present study we examined pathogen‐free, SCAD deficient BALB/cByJ mice and control BALB/cBy mice for biochemical and tissue changes following fasting or salicylate challenge. We observed mitochondrial swelling and microvesicular fatty changes in hepatocytes in mutant mice, especially severe following a fast. However, fasting did not alter their blood ammonia and there was no apparent clinical disease. Similarly, salicylates did not produce disease in the BALB/cByJ mice. We did detect in mice an alternative pathway for salicylate metabolism, by‐passing glycine conjugation which is the principal metabolic pathway in humans. © 1993 Wiley‐Liss, Inc.


title: Morphological diversity and evolution of Centrolepidaceae (Poales), a species‐poor clade with diverse body plans and developmental patterns

text: • Premise of the study: The small primarily Australian commelinid monocot family Centrolepidaceae displays remarkably high structural diversity that has been hitherto relatively poorly explored. Data on Centrolepidaceae are important for comparison with other Poales, including grasses and sedges. • Methods: We examined vegetative and reproductive morphology in a global survey of Centrolepidaceae based on light and scanning electron microscopy of 18 species, representing all three genera. We used these data to perform a cladistic analysis to assess character evolution. • Key results: Each of the three genera is monophyletic; Centrolepis is sister to Aphelia. Some Centrolepidaceae show a change from spiral to distichous phyllotaxy on inflorescence transition. In Aphelia and most species of Centrolepis, several morphologically distinct leaf types develop along the primary shoot axis and flowers are confined to dorsiventral lateral spikelets. Centrolepis racemosa displays secondary unification of programs of leaf development, absence of the leaf hyperphyll and loss of shoot dimorphism. Presence or absence of a leaf ligule and features of inflorescence and flower morphology are useful as phylogenetic characters in Centrolepidaceae. • Conclusions: Ontogenetic changes in phyllotaxy differ fundamentally between some Centrolepidaceae and many grasses. Inferred evolutionary transformations of phyllotaxy in Centrolepidaceae inflorescences also differ from those in grasses. In contrast with grasses, some Centrolepidaceae possess ligulate leaves where the ligule represents the boundary between the bifacial hypophyll and unifacial hyperphyll. All the highly unusual features of the morphological‐misfit species Centrolepis racemosa could result from the same saltational event. Centrolepidaceae offer good perspectives for studies of evolutionary developmental biology.


Poster Sessions


docid: urptalug

title: Microorganisms and exacerbation of chronic obstructive pulmonary diseases: pathophysiological mechanisms


Clinical diagnosis of wheezing in early childhood


ORAL PRESENTATIONS


The role of cytokines in infectious sinusitis and nasal polyposis


Viruses and asthma


In this issue – August 2012: Intrauterine insemination via coeliotomy · Acute‐phase proteins on the surface of leucocytes · Chiari‐like malformation in a Cavalier King Charles Spaniel · Review of head trauma in postnatal domestic animals · Effective duration of clip application in sheep · Intra‐articular injections for osteoarthritis in horses · Kunjin flaviviral encephalomyelitis in a horse · Vitamin D in short‐beaked echidnas


Hong Kong Museum of Medical Sciences website


docid: birkvwgk

title: Oral transmission of transmissible gastroenteritis virus by muscle and lymph node from slaughtered pigs

text: SUMMARY A study was conducted in the USA to determine whether transmissible gastroenteritis (TGE) virus could be transmitted from carcases of slaughtered pigs. Transmissible gastroenteritis virus was transmitted to 6‐day‐old piglets by dosing with homogenates of muscle and lymph node collected from 500 clinically normal pigs at the time of slaughter. All piglets in 2 separately housed litters showed clinical signs of TGE with 5 piglets dying within 10 d of oral dosing with homogenates. Transmissible gastroenteritis virus was isolated from 2 of these piglets and all piglets developed TGE antibody. Transmissible gastroenteritis virus was not isolated in tissue culture from muscle and lymph node homogenates, but was isolated from 4 (0.8%) of 500 tonsil samples collected from the same pigs. A survey of 250 serum samples provided an estimate of the prevalence of slaughtered pigs with TGE antibody of 34.8% in the sample population. The results indicate that carcases of some pigs from TGE endemic areas contain viable TGE virus, and that there would be a substantial risk of introducing TGE virus into Australia by the importation of uncooked pig meat from these areas.


title: Monitoring of dairy herds for Brucella abortus infection when prevalence is low

text: A total of 2,698 dairy herds were surveyed in 1981–1982 in New South Wales and north eastern Victoria in a review of the methods used to monitor them for the presence of Brucella abortus., The methods used to monitor dairy herds were testing of all breeding cows over 1 year of age using the rose bengal test (RBT) and complement fixation test (CFT), the bulk milk ring test (BMRT), and testing of blood samples collected at abattoirs using the RBT and CFT. The surveyed herds had at least one whole herd test, and BMRT was done at regular intervals in the period of the survey. Of the 99 (3.7%) herds that reacted to the BMRT, 91 (3.4%) herds had false positive reactions and 8 (0.3%) herds were declared infected on follow‐up herd testing. False‐positive reactions were obtained in 22 herds on more than one occasion. Common causes of false positive reactions to the BMRT were thought to be previous vaccination with Strain 19 and sampling in very early or late lactation. Of the 98 (3.63%) herds that reacted to the whole herd serological tests, 80 (2.96%) herds had false‐positive reactions and 18 (0.67%) herds were declared infected. Strain 19 vaccination was thought to be an important cause of false‐positive reactions. Fifty‐three (2.0%) herds showed suspicious reactions on abattoir monitoring but none was declared infected on follow‐up testing. Of the 18 herds with infected or equivocal status, the BMRT identified 8. In a further 6 herds, the infected cattle were not in the milking herd. Four other herds had milkers with high CFT titres which could not be confirmed as infected on culture. In no herds were culture positive RBT or CFT reactors from the milking herd detected without the BMRT being positive. The proportion of false‐positive reactions to the BMRT was high but the BMRT proved very useful in identifying dairy herds infected with B. abortus, when the prevalence of brucellosis was very low. Aust Vet J, 64: 97–100


Letters to the Editor


THE AUSTRALIAN COLLEGE OF VETERINARY SCIENTISTS—PRESIDENTIAL ADDRESS 1978


title: The TO strains of Theiler's viruses cause “slow virus—like” infections in mice

text: Intracerebral inoculation of mice with tissue culture–adapted TO strains of Theiler's mouse encephalomyelitis viruses results in a clinical disease consisting of spastic paralysis due to demyelination after a lengthy incubation period. Thus, in effect, these ordinary picornaviruses are capable of causing a slow infection in their natural host, the mouse. In addition, through the use of tissue culture–adapted virus stocks, virus content in mouse tissues now can be accurately quantified by standard plaque assay.


THE EFFECTS OF BIOTIN ADMINISTRATION ON GLUCOSE SYNTHESIS RATES IN STARVED PREGNANT SHEEP


title: Megaloblastic Anemia and Immune Abnormalities in a Patient with Methionine Synthase Deficiency

text: ABSTRACT. We report a case of methionine synthase deficiency associated with cellular immune deficiency discovered in a 14‐year‐old boy. Principal findings were: developmental delay, recurrent upper and lower respiratory tract infections, megaloblastic anemia, discovered at 3 months of age, unresponsive to cyanocobalamin and poorly responsive to folinic acid. Biochemical studies showed: an abnormal deoxyuridine suppression test despite normal serum folate, cobalamin and transcobalamin levels; a normal intracellular uptake of these two coenzymes; and an absolute requirement of methionine for fibroblast growth, suggestive of defective methionine synthesis. An absence of methionine synthase activity in the patient's bone marrow and a profound depression of this activity in lymphocytes and liver were found. Hypergammaglobulinemia with variable lymphopenia, depressed lymphocyte transformation after lectin or recall‐antigen stimulation, defective delayed‐type hypersensitivity and decreased natural killer activity were noted as well. The patient died at the age of 14.


In this issue – October 2012: Behavioural responses of lambs after clipping · Bovine coronavirus · Mares at risk of failure of transfer of passive immunity in foals · Vertebral canal mass causing neurological signs in a horse · Alfaxolone in young cats · Complications of neuraxial anaesthesia in a cat · Koala retrovirus


title: Clinical response decision tree for the mountain gorilla (Gorilla beringeii) as a model for great apes

text: Disease is one of the main threats to the remaining great ape populations of the world. The decision to intervene in the health of the great apes for population sustainability is controversial. Humans' increasing negative influence on great ape health has mandated the reevaluation of current management policies. The Mountain Gorilla Veterinary Project (MGVP) has been making health intervention decisions since 1986. The decision to intervene has often been made subjectively due to poorly defined criteria that are often influenced by emotion. This paper provides a consistent framework for evidence‐based health intervention decision‐making. The decision tree is a five‐tier process consisting of routine sentinel health observation, intensive follow‐up veterinary health observation, outbreak assessment, risk assessment, and risk management. Although this paper focuses on the mountain gorillas, it serves as a basis for evidence‐based decision‐making in other species. Am. J. Primatol. 68:909–927, 2006.© 2006 Wiley‐Liss, Inc.


142nd Annual Meeting of the American Neurological Association


title: The Tn Antigen—Structural Simplicity and Biological Complexity

text: Glycoproteins in animal cells contain a variety of glycan structures that are added co‐ and/or posttranslationally to proteins. Of over 20 different types of sugar–amino acid linkages known, the two major types are N‐glycans (Asn‐linked) and O‐glycans (Ser/Thr‐linked). An abnormal mucin‐type O‐glycan whose expression is associated with cancer and several human disorders is the Tn antigen. It has a relatively simple structure composed of N‐acetyl‐d‐galactosamine with a glycosidic α linkage to serine/threonine residues in glycoproteins (GalNAcα1‐O‐Ser/Thr), and was one of the first glycoconjugates to be chemically synthesized. The Tn antigen is normally modified by a specific galactosyltransferase (T‐synthase) in the Golgi apparatus of cells. Expression of active T‐synthase is uniquely dependent on the molecular chaperone Cosmc, which is encoded by a gene on the X chromosome. Expression of the Tn antigen can arise as a consequence of mutations in the genes for T‐synthase or Cosmc, or genes affecting other steps of O‐glycosylation pathways. Because of the association of the Tn antigen with disease, there is much interest in the development of Tn‐based vaccines and other therapeutic approaches based on Tn expression.


A TAXONOMIC STUDY OF THE GENUS PASTEURELLA USING A NUMERICAL TECHNIQUE


Report of the Executive Committee for 2006


title: Enteritis in cattle due to Yersinia pseudotuberculosis infection

text: SUMMARY: A selective medium was used to isolate Yersinia sp from the intestinal tract of 222 scouring cattle in Gippsland during 1985 and 1986. Intestinal infection with Y. pseudotuberculosis, particularly of serotype III, was found to be especially prevalent in weaned calves, yearlings and young adult cattle. Clinically affected cattle had a profuse liquid diarrhoea and many were systemically ill. Haematological changes suggestive of infection were present in 38 of 49 of these cattle. At least 35 cattle died and characteristic microabscesses were demonstrated in the intestinal mucosa of 20 of 26 examined histologically. Y. pseudotuberculosis was sensitive to tetracyclines in vitro and this drug produced a rapid bacteriological cure. Yersiniosis occurred during the winter, spring and early summer. Challenge of adult cattle with Y. pseudotuberculosis serotype III did not result in intestinal colonisation or clinical disease. Intestinal infection was, however, established in 4 weaned calves and haematological changes and antibody production were demonstrated in them. Intestinal microabscesses were seen in three calves killed on days 8, 14 and 18 after challenge. The fourth calf eliminated infection by day 18 and no lesions were demonstrated when it was killed on day 72. There is a very high prevalence of antibodies reacting with Y. pseudotuberculosis serotype III in adult cattle. It is concluded that cattle are a common host for this bacterium, infection being frequent, with clinical and fatal disease occurring occasionally. The factors leading to clinical disease are unknown.


EQUINE HERPESVIRUSES 4. CONCURRENT INFECTION IN HORSES WITH STRANGLES AND CONJUNCTIVITIS


Detection of viral genes and their products in chronic neurological diseases


Australian student wins 2003 Cornell leadership prize


NEWS


title: Aspects of the diagnosis, pathogenesis and epidemiology of canine parvovirus

text: Between 18 July 1980 and 2 January 1981, 188 samples (145 faeces and 43 intestinal contents) were submitted from dogs with suspected canine parvovirus (CPV) enteritis. CPV was demonstrated in 56 (30%) of these samples; the weekly rate of positive CPV identification was remarkably constant at ∼30% even though clinical and often post‐mortem findings strongly supported a diagnosis of CPV enteritis. The simplest, most sensitive and most rapid method for detection of virus was haemagglutination (HA) which was twice as sensitive as isolation of virus and 8 times as sensitive as electron microscopy (EM). Forty nine of 56 (88%) samples positive for CPV were from dogs < 1 year old and 44 (79%) CPV‐positive samples were from pups < 6 months old; only one sample from a pup < 2 months old (pup was 7 weeks old) was positive. An additional 68 samples (53 faeces and 15 intestinal contents) were submitted from Beagle dogs that were part of a colony of ∼1200 dogs. Epidemiological data pinpoints the entry of CPV into the colony in November 1978 at which time most dogs including pups < 6 months of age developed antibody to CPV without developing clinical disease. From these data an overview of some aspects of the pathogenesis and epidemiology of CPV is constructed.


docid: arfitzhl

title: The Abstracts of the 4th UQ Symposium on Organisational Psychology: Emmanuel College, University of Queensland

text: These abstracts form the collection of papers that were presented at the 4th UQ Symposium on Organisational Psychology held at Emmanuel College, University of Queensland, Brisbane on Saturday 24th July, 2004. The UQ Symposium on Organisational Psychology is an annual even organised by the Centre for Organisational Psychology at the University of Queensland. The aim of the symposium is for academic psychologists to present their latest research to fellow academics and practitioners. Papers were accepted for either paper presentation or poster presentation following a peer‐review process. The 100 delegates who attended consisted of practitioners and academics. The invited speaker was Dr Sally Carless (Monash University, Melbourne) who presented her latest research on selection procedures. The 5th Symposium will take place on Saturday 4th June, 2005. For more information about the UQ Symposium on Organisational Psychology series please contact Robin Martin (r.martin@psy.uq.edu.au).


PERINATAL FOAL MORTALITY ASSOCIATED WITH A HERPESVIRUS


title: Epidemiology of encephalitis in children: A 20‐Year survey

text: Four hundred five children from the Helsinki area who were 1 month to 16 years old were treated for acute encephalitis at the Children's Hospital, University of Helsinki, from January 1968 through December 1987. Encephalitis occurred most commonly in children 1 to 1.9 years of age, among whom the incidence was 16.7 per 100,000 child‐years. The incidence remained quite high until the age of 10 years, and then gradually declined to 1.0 per 100,000 child‐years at the age of 15 years. Since 1983, when mumps, measles, and rubella vaccination eradicated the encephalitides associated with these microbes, the major associated agents have been varicella‐zoster, Mycoplasma pneumoniae, and respiratory and enteroviruses. In infants younger than 1 year of age, the major agents were enteroviruses, herpes simplex virus, and the group of “others,” whereas in older children, respiratory viruses and Mycoplasma Pneumoniae as well as varicella‐zoster virus, dominated. In children aged 1 to 11 months, the causal agent could not be identified in one‐half of all cases, whereas in children who were at least 10 years old, the etiology remained unknown in only one‐fourth of cases. Male dominance was most evident in the 4‐ to 9‐year age group. The difference in etiology between males and females was significant (p = 0.02); mumps and varicella were more common in boys, and adenovirus and Mycoplasma pneumoniae were more common in girls. The overall male‐to‐female ratio was 1.4:1. Characteristic seasonal variation occurred in encephalitides associated with mumps, measles, and entero‐ and respiratory viruses. In the whole series, some accumulation appeared in February and March. Less than one‐half of this number appeared in July and August.


title: Substrate‐Induced Self‐Assembly of Cooperative Catalysts

text: Dissipative self‐assembly processes in nature rely on chemical fuels that activate proteins for assembly through the formation of a noncovalent complex. The catalytic activity of the assemblies causes fuel degradation, resulting in the formation of an assembly in a high‐energy, out‐of‐equilibrium state. Herein, we apply this concept to a synthetic system and demonstrate that a substrate can induce the formation of vesicular assemblies, which act as cooperative catalysts for cleavage of the same substrate.


Letters


title: Synovial pathologic changes in spontaneous canine rheumatoid‐like arthritis

text: The synovial fluid and membrane were studied in 10 dogs meeting the American Rheumatism Association criteria for classic human rheumatoid arthritis (RA). Light microscopic pathologic features were consistent with those found in the human disease. Neutrophilic infiltration of synovium was somewhat more prominent than in chronic human RA, and activated lymphocytes in fluid or membrane were less frequent. The proliferative and plasma cell reaction seemed identical. Electron microscopy (EM) suggested microvascular injury with findings which included electron dense deposits in the vessel walls of 2 dogs. Seven dogs had meshworks of 20‐25 mm tubules in tubuloreticular structures (TRS) similar to those seen in human systemic lupus erythematosus and only occasionally in human RA. There were also crystalline arrays of tubules, a configuration previously reported in tumors and virus infections and possibly suggestive of a cellular reaction to virus infection. To date no initiating agent has been identified, but this spontaneous canine disease which is very similar to human RA can provide a valuable model in which to examine pathogenesis of chronic arthritis.


title: The virology of demyelinating diseases

text: Infectious agents have been postulated as causes of multiple sclerosis for over a century. The possible role of a virus or viruses is supported by data that (1) a childhood exposure is involved and “viral” infections may precipitate exacerbations of disease, (2) experimental infections in animals and natural infections in humans can cause diseases with long incubation periods, remitting and relapsing courses, and demyelination, and (3) patients with multiple sclerosis have abnormal immune responses to viruses. The pathogenesis of three human demyelinating diseases of known viral etiology is discussed. In progressive multifocal leukoencephalopathy, a papovavirus selectively infects oligodendrocytes and causes focal areas of demyelination. In postmeasles encephalomyelitis, the virus is lymphotrophic and disrupts immune regulation that can result in an autoimmune perivenular demyelinating illness without evidence of infection of the central nervous system. In human immunodeficiency virus‐encephalopathy and myelopathy virus is present in macrophages and microglia and the myelin abnormalities apparently are caused by soluble factors such as viral proteins, cytokines, or neurotoxins. These findings may have implications on how, when, and where to seek viruses in multiple sclerosis.


title: Dendritic DNA Building Blocks for Amplified Detection Assays and Biomaterials

text: DNA branches out: Recent advances in the assembly of dendritic DNA structures enable applications in biosensing of pathogens and the generation of novel pads of DNA hydrogel biomaterials (see scheme, left). These pads are immersed in a cell extract containing RNA polymerase (red), ribosomes (yellow), and other components for in vitro protein biosynthesis, where they can be used as templates for cell‐free protein production.[Image: see text]


title: Immunohistochemical localization of components of the immune barrier in the olfactory mucosae of salamanders and rats

text: Immunohistochemical techniques were used to investigate the cellular distribution of components of the secretory immune system, including secretory immunoglobulin, secretory piece, and J chain, as well as other immunoglobulins and nonspecific defense factors in the olfactory mucosae of salamanders and rats. In the salamander, secretory immunoglobulin M, and J chain were localized in duct and acinar cells of Bowman's glands, in B lymphocytes, and in sustentacular cells in immature regions of the olfactory mucosa. Lactoferrin and lysozyme were also present in Bowman's glands, in sustentacular cells in immature regions of the olfactory mucosa, and in blood cells in the lamina propria. Olfactory nerve section resulted in the presence of increased numbers of secretory immunoglobulin‐immunoreactive B lymphocytes and in an altered distribution of IgM, secretory piece, and lactoferrin. In the rat, secretory immunoglobulin A and J chain were localized in duct and acinar cells of Bowman's glands and in B lymphocytes in the lamina propria. Secretory piece could be demonstrated in Bowman's glands only in rats that had a prior viral infection. Other defense factors, localized in the lamina propria, included IgG in the connective tissue stroma and in B lymphocytes, IgD‐immunore‐active B lymphocytes, and IgE‐immunoreactive cells that were identified as mucosal mast cells. Lactoferrin and lysozyme were present in serous acinar cells of Bowman's glands and in blood cells. These results demonstrate that the olfactory mucosa is protected from pathogenic invasion by the secretory immune system as well as other immunoglobulins, lactoferrin, and lysozyme.


HAEMAGGLUTINATING ENCEPHALOMYELITIS VIRUS INFECTION OF PIGS


title: An estimate of the economic effects of cattle tick (Boophilus microplus) infestation on Queensland dairy farms

text: Objective To establish the cost to the Queensland dairy industry of cattle tick infestation and its control, excluding the costs incurred from control measures directed specifically at tick fever and morbidity and mortality arising from tick fever. Study design Economic models are described that have been based on empirical data relating to liveweight and milk yield loss, and on a survey of control practices and tick infestation. The first two models were designed to estimate costs of control and losses resulting from tick infestation on a single dairy farm. The third model developed estimates of the cost of tick infestation for each of four regions within the tick‐infested area of Queensland. Results The overall cost to the Queensland dairy industry of the cattle tick (excluding the costs associated specifically with tick fever) and based on 1998 management practices, was $4,096,000 per annum. About 49% of this cost was related to the costs of control and 51% to losses in production. Conclusion Cattle tick infestation represents a significant impost on dairy producers in Queensland, and although the actual cost will change as deregulation results in economic changes in the industry, infestations of ticks will continue to be expensive to control.


title: Evidence for multiple sclerosis as an infectious disease

text: Evidence for a viral cause of multiple sclerosis (MS) is indirect since no infectious agent has been reproducibly isolated from MS tissues nor has viral genome or antigen been consistently identified. The occurrence of spontaneous human and animal models of demyelination, serologic studies, and epidemiologic data provide pursuasive circumstantial evidence for an infectious trigger in this disease. Potential mechanisms for viral induced demyelination include persistent infection of host tissues or immune mediated organ damage either in the presence or absence of the infectious agent. Any proposed viral candidate should cause demyelination in animals or man and the pattern of infection should be consistent with the unique geographic features of MS epidemiology. In addition, serologic studies should support an infection by the agent and/or viral genome should be detected in MS tissues. At this time no virus can be unequivocally linked to MS but cumulative evidence is more supportive of canine distemper virus than other viruses.


Abstracts Oral


title: Experimental colibacillosis in gnotobiotic piglets exposed to 3 enterotoxigenic serotypes

text: SUMMARY Three strains of enterotoxigenic Escherichia coli (ETEC) (064:KSNT, K88ac; 020:KSNT, K88ac and 08:K85ab, K99) originally cultured from outbreaks of diarrhoea in piglets a few hours old, were administered orally to gnotobiotic piglets. There was a marked age‐related difference in the clinical response to infection between the 3 strains although they all produced heat‐stable toxin. All 3 strains produced severe clinical signs of depression, anorexia, vomiting, diarrhoea, followed by dehydration and death in one‐day‐old piglets. In piglets infected at 3 days of age the two K88+ ETEC caused diarrhoea and death but the K99+ ETEC induced moderate diarrhoea only. In piglets infected at 7 days of age, the 064 strain produced severe diarrhoea and death, the 020 strain caused mild diarrhoea in 3 of 6 piglets with one death while the 08 strain caused no illness. Pathological changes in the intestinal tract associated with these infections were minimal, or absent. Immunofluorescent staining with homologous hyperimmune sera demonstrated adherence of the 3 ETEC strains to the brush border of small intestinal epithelial cells. Fluorescing organisms were observed in all infected piglets irrespective of the severity of clinical signs but the degree and extent of colonisation varied with the age of the piglets and the infecting strain. This may explain the difference in clinical response between the 3 strains.


docid: djxoiytq

title: Molecular mimicry and multiple sclerosis: Degenerate T‐cell recognition and the induction of autoimmunity

text: Various mechanisms have been proposed for the initiation of autoimmune responses by autoreactive T‐cell clones. One of these, the molecular mimicry hypothesis, postulates that myelin‐reactive T‐cell clones are activated by foreign antigens. Until recently, sequence homology between self‐ and foreign antigens was considered necessary for cross‐recognition to occur in multiple sclerosis. This article reviews current progress in T‐cell receptor immunology that led to modify this view and proposes a role for degenerate T‐cell antigen recognition in the induction of autoimmunity. Ann Neurol 1999;45:559–567


Proceedings of the 42nd annual meeting of the american rheumatism association a section of the arthritis foundation june 1 & 2, 1978 new york city abstracts of papers presented


title: Increased serum levels of cartilage oligomeric matrix protein in chronic erosive arthritis in rats

text: OBJECTIVE: To investigate the utility of serum cartilage oligomeric matrix protein (COMP) for disease monitoring in rats with chronic pristane‐induced arthritis, and to examine the influence of age, sex, and genes on COMP concentrations in rat serum. METHODS: Serum COMP levels were quantified by immunoassay. Sera were obtained from DA, E3, and (E3 × DA)F(1) rats each week between the ages of 4 and 30 weeks. The (E3 × DA)F(2) (second generation after intercrossing) rats were injected intradermally with the synthetic oil pristane. Arthritis was monitored by a macroscopic scoring system, and serum levels of COMP were measured on days 6, 35, and 49 after immunization. RESULTS: Serum levels of COMP decreased during growth, and reached a plateau after the age of 12 weeks. The DA rats had higher COMP levels than the E3 rats, and the (E3 × DA)F(1) rats had intermediate levels. No differences were observed in these levels when the rats were grouped by sex. Arthritic (E3 × DA)F(2) rats had increased serum concentrations of COMP on days 35 and 49 after pristane injection (P < 0.0001 versus the nonarthritic animals). COMP levels correlated with the severity of macroscopically detectable arthritis at both time points (r > 0.9). Rats with a chronic disease course were distinguished by higher serum concentrations of COMP during the acute stage than animals with similar clinical scores but with resolving arthritis (P < 0.01). CONCLUSION: Serum analyses of COMP offer promise for monitoring tissue involvement in experimental arthritis. Such analyses should be useful for monitoring therapeutic interventions aimed at retarding tissue destruction as well as for studies of the genetically determined regulation of COMP turnover and susceptibility to arthritis. The application of molecular marker measurements to experimental arthritis offers a new possibility for verifying the utility of such measurements in human arthritis.


Do sensational media reports about severe acute respiratory syndrome affect the mindset of healthcare workers?


title: Scale issues in the study of primate foraging: Red colobus of Kibale National Park

text: Diet data have been used to address a number of theoretical issues. We often calculate the proportion of time spent eating different foods (e.g., fruits, leaves) to place species into dietary categories and contrast morphological or behavioral traits among categories. Yet we have little understanding of how flexible species can be in terms of the plant parts and species consumed. To address this issue, we analyzed data on the diets of red colobus monkeys (Procolobus badius) from Kibale National Park, Uganda, to evaluate temporal and spatial variability in the plant parts and species eaten. After considering observer differences and sampling issues, we evaluated how different a group's diet could be if samples were taken in different years. We found that the diet of the same groups showed significant, consistent changes over a 4‐year period. For example, the time spent feeding on leaves increased from 56% in 1994 to 76% in 1998. The plant parts and species eaten by eight groups inhabiting different types of forest (e.g., pristine, logged, riverine) varied among groups. The largest interdemic difference was seen in the use of young leaves (38%). Dietary differences were also found between groups with overlapping home ranges (41–49% overlap). Different subspecies of Procolobus badius also varied in diet; however, this variation was often not of the magnitude documented within Kibale for the same population. The fact that diet can vary considerably over small spatial and short temporal scales within the same species raises the intriguing question as to what level of interspecific difference is biologically significant for addressing particular questions. We conclude that behavioral flexibility blurs our traditional stereotypic assessment of primates; a study of one group that occupies a specific habitat at one point in time may not adequately represent the species. Am J Phys Anthropol 117:349–363, 2002. © 2002 Wiley‐Liss, Inc.


title: Risk factors in multiple sclerosis: a population‐based case‐control study in Hautes‐Pyrénées, France

text: ABSTRACT‐ A population‐based study of the prevalence and risk factors of multiple sclerosis (MS) was conducted in the Hautes‐Pyrénées, the southwestern region of France. The prevalence rate per 100,000 was equal to 40. Data on the past medical history of 63 MS patients and matched controls were collected. The frequency and age at occurrence of common childhood infections were similar for both the MS cases and controls. There was no difference between the frequency of vaccination for MS patients and for controls. However, the age at which MS patients were immunized against poliomyelitis was significantly higher than the corresponding age for controls (15.8 years versus 8.9 years, P < 0.01). Antibody titers for various viruses were measured. The mumps antibody titer was significantly higher in the MS patients than in the controls. Also, MS patients tended to have higher titers for measles antibodies.


title: Paediatric apnoeas are not related to a specific respiratory virus, and parental reports predict hospitalisation

text: AIM: The aim of this study was to determine the frequency of apnoeas in previously healthy young infants with acute respiratory tract infection (ARI) and correlate their occurrence with isolated micro‐organisms, clinical findings, disease severity and outcome. METHODS: We performed reverse transcriptase real‐time polymerase chain reaction (RT‐PCR) on the nasal wash specimens of a prospective cohort study of 582 children with ARI. Clinical data on a subgroup of 241 infants under three months of age, with and without apnoeas, were compared. RESULTS: Our study found that 19 (7.9%) of the 241 infants under three months old had a history of apnoeas: eight had a respiratory syncytial virus (RSV), five had a different virus than RSV and seven RT‐PCR results were negative. Infants with apnoeas were more likely to have cyanosis, had longer hospital stays and required extra oxygen for a longer period. Most patients with parental reported apnoeas also experienced apnoeas during hospitalisation. CONCLUSION: This study observed apnoeas irrespective of the isolated micro‐organism, and we hypothesise that they were related to the pathophysiology of the respiratory infection and not to the micro‐organism itself. Parental reported apnoeas were a major warning sign and predicted that apnoeas would occur in hospital.


title: Molecular pathogenesis of neurotropic viral infections

text: Classical virologists defined a number of viruses that affect the nervous system and identified tissue tropism, extraneural replication, and viremia as important parameters that determine whether viral infections will affect the central nervous system. Molecular techniques are expanding this knowledge by permitting us to relate specific genes and gene products to two defined phenotypes: neuroinvasion and neurovirulence. Two converging situations make this knowledge particularly useful: (1) the development of antiviral drugs and subunit vaccines, which mandate that pathogenesis be related to specific regions of the viral genome; and (2) the expanding problem of central nervous system infections in immunodeficient states.


Rearing and management of diarrhoea in calves to weaning


2013 Annual Meeting Abstract Supplement


title: Colitis in sheep due to a Campylobacter‐like bacterium

text: Epidemic diarrhoea was observed in approximately 2,000 of 6,700 sheep on 9 farms. The disease, called weaner colitis, caused mortality of 1 %, while morbidity varied from 20 to 75%. Colon contents from affected sheep were inoculated into 17 sheep, 13 of which developed diarrhoea 5 to 7 days after inoculation. Naturally and experimentally infected sheep had mild, erosive typhlitis and colitis. Microscopic examination of washed scrapings of colonic mucosa from all affected sheep revealed masses of curved bacteria that were not seen in controls. Electron microscopic examination showed similar bacteria adherent to colonic epithelium of an experimentally infected sheep. Curved, motile bacteria were isolated from 2 naturally occurring cases. One isolate was inoculated into 9 sheep, 2 of which developed diarrhoea. The other isolate was given to 4 sheep without observable effect. The curved bacteria grew only on media containing blood, in an atmosphere of approximately 10% air, 10% CO(2) and 80% H(2). They were Gram‐negative, with a polar flagellum at one or both ends, they did not ferment glucose or give a positive catalase reaction. It is suggested that these bacteria are a new Campylobacter species and that they play a major role in the aetiology of weaner colitis.


title: Synthesis, Cytotoxicity Testing, and Structure–Activity Relationships of Novel 6‐Chloro‐7‐(4‐phenylimino‐4H‐3,1‐benzoxazin‐2‐yl)‐3‐(substituted)‐1,4,2‐benzodithiazine 1,1‐dioxides

text: A new series of 16 6‐chloro‐1,1‐dioxo‐7‐{4‐[(4‐R(1)‐phenyl)imino]‐4H‐3,1‐benzoxazin‐2‐yl}‐3‐(substituted amino)‐1,4,2‐benzodithiazines 7–22 was prepared in order to evaluate the cytotoxic activity against six human cancer cell lines. The structures of the new compounds were confirmed by IR, (1)H‐, and (13)C‐NMR, elemental analysis and in the cases of 11 and 31 by X‐ray crystal structure analysis. This analysis showed that contrary to our earlier report the structures contain a benzoxazine ring instead of the proposed quinazolinone ring. The bioassay indicated that the benzodithiazine derivatives 7–22 possess cancer cell growth‐inhibitory properties. Some compounds showed a high level of selectivity for certain cell lines. The most active compounds 11, 12, 16, 19, 21, and 22 exhibited potency higher or comparable to cisplatin. The compounds were particularly effective in LCLC‐103H and MCF‐7 cell lines with IC(50) values of 0.49–1.60 µM. Quantitative structure activity relationships (QSAR) revealed that a chloro substituent R(1) in the phenyl ring as well as the shape of the substituted amino group at R(2) (e.g., unsaturation is beneficial) are important for potency.


title: Virus antibody levels in systemic lupus erythematosus

text: Antibody titers to a group of viral antigens have been determined in sera from patients with systemic lupus erythematosus (SLE), control groups with inflammatory diseases and normals. Mean titers in SLE sera for all viruses tested were significantly greater than in four control groups, but not greater than in active tuberculosis, both by the complement‐fixation (CF) and hemagglutination‐inhibition (HI) methods. By the CF method, only measles virus showed significantly higher titers in SLE than in all control groups; by the HI method, measles antibody titers were higher in SLE than in all groups but tuberculosis. There was no correlation between antibody titers and gammaglobulin levels. The results indicated a moderate though variable overall hypereactivity in SLE to the viral antigens tested.


docid: vfsyvmaz

title: An overview of Australia's poultry industry in 1989


SOME OBSERVATIONS ON THE PROPAGATION OF AVIAN INFECTIOUS BRONCHITIS VIRUS IN TISSUE CULTURE


title: GAUGING NEW ZEALAND'S SUCCESS AT POVERTY REDUCTION IN THE NEW MILLENIUM

text: This paper presents the results of the New Zealand Poverty Measurement Project's analysis of the effects of the 1990s social reforms in New Zealand on the incidence and severity of poverty, and assesses the impact of five social and economic policies introduced by the Labour‐led coalition governments since 1999: New Zealand superannuation, income‐related rents on state houses, active labour market policies for an employment‐rich economy, the Primary Health Care Strategy and the planned income support policy to reduce child poverty. Superannuation is assessed as both adequate and sustainable, rents for state houses are found to be affordable, and GDP growth and employment have increased incrementally as unemployment and benefit numbers have decreased. The Primary Health Care Strategy is an innovative initiative that will increase affordable access to general practitioners, but it and the proposed child assistance initiatives are too new to be adequately assessed. Of the challenges that remain, policy priorities should centre on housing alternatives, including home ownership for low‐income households not in state houses; income support for poor households, particularly those with children; and multi‐sector development of education and training aimed at lifting economic and social capacity.


title: Big‐bodied males help us recognize that females have big pelves

text: Schultz ([1949] Am. J. Phys. Anthropol. 7:401–424) presented a conundrum: among primates, sexual dimorphism of the pelvis is a developmental adjunct to dimorphism in other aspects of the body, albeit in the converse direction. Among species in which males are larger than females in body size, females are larger than males in some pelvic dimensions; species with little sexual dimorphism in nonpelvic size show little pelvic dimorphism. Obstetrical difficulty does not explain this relationship. The present study addresses this issue, evaluating the relationship between pelvic and femoral sexual dimorphism in 12 anthropoid species. The hypothesis is that species in which males are significantly larger than females in femoral size will have a higher incidence, magnitude, and variability of pelvic sexual dimorphism, with females having relatively larger pelves than males, compared with species monomorphic in femoral size. The results are consistent with the hypothesis. The proposed explanation is that the default pelvic anatomy in adulthood is that of the female; testosterone redirects growth from the default type to that of the male by differentially enhancing and repressing growth among the pelvic dimensions. Testosterone also influences sexual dimorphism of the femur. The magnitude of the pelvic response to testosterone is greater in species that are sexually dimorphic in the femur than in those that are monomorphic. Am J Phys Anthropol, 2005. © 2004 Wiley‐Liss, Inc.


SOME IMMUNOLOGICAL ASPECTS OF A RECENT AUSTRALIAN ISOLATE OF INFECTIOUS BRONCHITIS VIRUS


VIRUS DISEASES OF DOMESTIC ANIMALS


title: The inflamed sputum in lower respiratory tract infection: l‐lactate levels are correlated to neutrophil accumulation

text: Lower respiratory tract infections (LRTI) are common, but little is known about the response of biomarkers of inflammation in the lungs. Therefore, our primary aim was to compare the concentration of l‐lactate to the concentration of neutrophils in sputum and systemic markers of infection. Because it is difficult to differentiate viral and bacterial infection on the basis of clinical presentation in LRTI, our secondary aim was to evaluate if l‐ and d‐lactate may serve as markers of local inflammation as representatives of neutrophils and bacteria, respectively. METHODS: Patients with acute LRTI were prospectively recruited. Sputum samples were collected and analysed for neutrophil count, l‐lactate and d‐lactate. We had data on pathogens from sputum cultures and polymerase chain reaction (PCR) (atypical bacteria, virus) and C‐reactive protein (CRP) from blood. RESULTS: In 44 sputum samples from 32 patients, the median (interquartile range (IQR)) sputum neutrophil granulocyte count was 0.615 × 10(7) cells/mL (0.236–1.575). The sputum neutrophil granulocyte count was associated with sputum l‐lactate (p = 0.011) and CRP (p = 0.018), but not with d‐lactate (p = 0.177). There was a strong association between sputum d‐lactate and l‐lactate (p < 0.0001). CONCLUSION: As l‐lactate in sputum is closely correlated to sequestration of neutrophils in the lungs, l‐lactate is a marker for local inflammation in LRTI and a potential biomarker in clinical management of LRTI. On expectorated sputum, d‐lactate had no clinical relevance.


141st Annual Meeting of the American Neurological Association


Poster Presentations


title: Feeding ecology of bonobos living in forest‐savannah mosaics: Diet seasonal variation and importance of fallback foods

text: Primates along with many other animal taxa are forced to cope with large shifts in basic ecological conditions because of rapid anthropogenically induced changes of their habitats. One of the coping strategies for primates is to adjust their diet to these changes, and several studies have demonstrated the importance of fallback resources for this. Bonobos, like chimpanzees, might be particularly vulnerable to habitat fragmentation because of their high dependence on fruit availability. Little is known, however, about bonobo feeding ecology in fragmented habitats and their use of fallback resources. In this study, we investigate diet seasonal variation and the exploitation of preferred and fallback foods in a bonobo population living in forest‐savannah mosaics. Results show that bonobos have adapted to this fragmented habitat by feeding on only a few fruit species, including an important number of non‐tree species (liana, herb and savannah shrub), in comparison to populations living in dense forests. These non‐tree plants have been defined as fallback and non‐preferred foods, which are most probably consumed to maintain high frugivory. Interestingly, we identified that preferred foods are all typical of mature forests while fallback resources are mainly found in forest edges or disturbed areas. This finding indicates that bonobos prefer to use mature forests when feeding, as they do for nesting, but extend their range use to forest areas in close proximity to humans when the availability of preferred fruits is low. Finally, we show that bonobo diet relies heavily on two abundant fallback fruits: Musanga cecropioides and Marantochloa leucantha. Other studies have demonstrated that the selection of abundant fallback resources enables primates to subsist at high densities and to maintain cohesive groups, as observed at this study site. Our findings suggest that bonobos living in forest‐savannah mosaics can be considered as staple fallback food consumers. Am. J. Primatol. 77:948–962, 2015. © 2015 Wiley Periodicals, Inc.


title: Environmental effects of a marine fish farm of gilthead seabream (Sparus aurata) in the NW Mediterranean Sea on water column and sediment

text: This study examined the effects of organic enrichment on water column, sediments and macrofauna caused by a fish farm in the Mediterranean Sea. Samples were collected on four sampling campaigns over a one‐year cycle. Significant differences were found in the water column in dissolved oxygen, dissolved inorganic nitrogen, phosphate and total phosphorus concentrations between the fish farm and the control. The increase in the dissolved inorganic nitrogen and phosphate concentrations at the fish farm modified the stoichiometric ratios between nutrients, with silicate acting as limiting nutrient at the fish farm 11% more than at the control. Nevertheless, chlorophyll a concentration in the water column was higher at the control station, probably due to the fouling of the underwater fish farm structures. Significant differences were found in sediment concentrations of organic matter, total phosphorus and redox potential between the fish farm and the control. The Canonical Correlation Analysis indicated that organic matter, total phosphorus, redox potential and% of gravels accounted for 68.9% of the total variance in the species data. Changes were observed in macrofauna, with a decrease in number of species and up to a nine‐fold increase in abundance with respect to the control.


title: Letters

text: Editor's note: The AVJ welcomes letters from members in all areas of the profession on matters of importance to you. Please keep them brief ‐ to meet our space constraints. Letters will be subject to minimal editing procedures. Subject to letters complying with the AVJ's legal responsibilities, they will not be censored. Nor will individuals or groups waging ‘campaigns’ be permitted to abuse these pages. If submitting a letter intended for publication, kindly identify it as such. Letters to the Editor can be sent by mail, fax or e‐mail at the contact points listed at the start of the News Section. Writers may use a pseudonym to protect their identities ‐ but must supply the Editor with verifiable names and points of contact.


title: Crystallization and preliminary X‐ray diffraction studies of the influenza C virus glycoprotein

text: Influenza C virus contains a single surface glycoprotein in its lipid envelope which is the hemagglutinin‐esterase‐fusion glycoprotein (HEF). HEF binds cell‐surface receptors, is a receptor‐destroying enzyme (a 9‐O‐acetylesterase), and mediates the fusion of virus and host cell membranes. A bromelain‐released soluble form of HEF has been crystallized. Two different tetragonal forms have been identified from crystals with the same morphology [P (1(3))22, a = b = 154.5, c = 414.4 Å, and P4(1(3))2(1)2, a = b = 217.4, c = 421.4 Å]. Both crystal forms share a common packing scheme. Synchrotron data collection and flash cooling of crystals have been used for high‐resolution data collection.


docid: vkueawox

title: Environmental associations with the risk of multiple sclerosis: the contribution of ecological studies


Green Plant Protection Innovation: Challenges and Perspectives


title: Diastolic shock index and clinical outcomes in patients with septic shock

text: BACKGROUND: Loss of vascular tone is a key pathophysiological feature of septic shock. Combination of gradual diastolic hypotension and tachycardia could reflect more serious vasodilatory conditions. We sought to evaluate the relationships between heart rate (HR) to diastolic arterial pressure (DAP) ratios and clinical outcomes during early phases of septic shock. METHODS: Diastolic shock index (DSI) was defined as the ratio between HR and DAP. DSI calculated just before starting vasopressors (Pre-VPs/DSI) in a preliminary cohort of 337 patients with septic shock (January 2015 to February 2017) and at vasopressor start (VPs/DSI) in 424 patients with septic shock included in a recent randomized controlled trial (ANDROMEDA-SHOCK; March 2017 to April 2018) was partitioned into five quantiles to estimate the relative risks (RR) of death with respect to the mean risk of each population (assumed to be 1). Matched HR and DAP subsamples were created to evaluate the effect of the individual components of the DSI on RRs. In addition, time-course of DSI and interaction between DSI and vasopressor dose (DSI*NE.dose) were compared between survivors and non-survivors from both populations, while ROC curves were used to identify variables predicting mortality. Finally, as exploratory observation, effect of early start of vasopressors was evaluated at each Pre-VPs/DSI quintile from the preliminary cohort. RESULTS: Risk of death progressively increased at gradual increments of Pre-VPs/DSI or VPs/DSI (One-way ANOVA, p < 0.001). Progressive DAP decrease or HR increase was associated with higher mortality risks only when DSI concomitantly increased. Areas under the ROC curve for Pre-VPs/DSI, SOFA and initial lactate were similar, while mean arterial pressure and systolic shock index showed poor performances to predict mortality. Time-course of DSI and DSI*NE.dose was significantly higher in non-survivors from both populations (repeated-measures ANOVA, p < 0.001). Very early start of vasopressors exhibited an apparent benefit at higher Pre-VPs/DSI quintile. CONCLUSIONS: DSI at pre-vasopressor and vasopressor start points might represent a very early identifier of patients at high risk of death. Isolated DAP or HR values do not clearly identify such risk. Usefulness of DSI to trigger or to direct therapeutic interventions in early resuscitation of septic shock need to be addressed in future studies.


Authors’ correction for Euro Surveill. 2020;25(3)


title: Inflammasome Is Activated in the Liver of Cholestatic Patients and Aggravates Hepatic Injury in Bile Duct–Ligated Mouse

text: BACKGROUND & AIMS: Inflammation plays an important role in the pathogenesis of cholestatic liver injury, but it is unclear whether the inflammasome is involved and is the objective of this study. METHODS: Gene expression was analyzed in the livers of patients with primary biliary cholangitis (n = 15) and primary sclerosing cholangitis (n = 15). Bile duct ligation (BDL) or sham operation was performed in wild-type (WT) and Caspase-1(–/–) (Casp1(–/–)) mice for 7 days. Mouse hepatocytes and macrophages were treated with bile acids. RESULTS: Caspase-1, NLRP1, NLRP3 and IL-1β were significantly increased in the livers of cholestatic patients when compared to healthy control subjects (n = 9). Significantly higher levels of plasma IL-1β (826 vs 345 pg/ml), ALT (674 vs 482 U/L) and ALP (900 vs 622 U/L) were seen in WT BDL mice compared to Casp1(–/–) BDL mice. Caspase-1 cleavage was found only in WT BDL livers. Assessment of liver histology indicated more fibrosis in Casp1(–/–) BDL mice than in WT BDL mice, confirmed by analyses of liver hydroxyproline content and the expression of fibrotic genes. Profiling of immune cells revealed that there were more macrophages in Casp1(–/–) BDL livers than in WT BDL livers. Further macrophage phenotype characterization indicated that Casp1(–/–) BDL livers had more M2 anti-inflammatory macrophages evidenced by more CD206 positive cells and higher expression of IL-4, CD163, Fizz1 and IL-33. When mouse hepatocytes and peritoneal macrophages were exposed to cholestatic levels of major endogenous bile acids (300μM TCA), neither IL-1β induction nor procaspase-1 cleavage were detected. CONCLUSIONS: The inflammasome exacerbates cholestatic liver injury, but bile acids do not directly activate the inflammasome.


title: An immunoinformatic approach driven by experimental proteomics: in silico design of a subunit candidate vaccine targeting secretory proteins of Leishmania donovani amastigotes

text: BACKGROUND: Visceral leishmaniasis (VL) caused by dimorphic Leishmania species is a parasitic disease with high socioeconomic burden in endemic areas worldwide. Sustaining control of VL in terms of proper and prevailing immunity development is a global necessity amid unavailability of a prophylactic vaccine. Screening of experimental proteome of the human disease propagating form of Leishmania donovani (amastigote) can be more pragmatic for in silico mining of novel vaccine candidates. METHODS: By using an immunoinformatic approach, CD4+ and CD8+ T cell-specific epitopes from experimentally reported L. donovani proteins having secretory potential and increased abundance in amastigotes were screened. A chimera linked with a Toll-like receptor 4 (TLR4) peptide adjuvant was constructed and evaluated for physicochemical characteristics, binding interaction with TLR4 in simulated physiological condition and the trend of immune response following hypothetical immunization. RESULTS: Selected epitopes from physiologically important L. donovani proteins were found mostly conserved in L. infantum, covering theoretically more than 98% of the global population. The multi-epitope chimeric vaccine was predicted as stable, antigenic and non-allergenic. Structural analysis of vaccine-TLR4 receptor docked complex and its molecular dynamics simulation suggest sufficiently stable binding interface along with prospect of non-canonical receptor activation. Simulation dynamics of immune response following hypothetical immunization indicate active and memory B as well as CD4+ T cell generation potential, and likely chance of a more Th1 polarized response. CONCLUSIONS: The methodological approach and results from this study could facilitate more informed screening and selection of candidate antigenic proteins for entry into vaccine production pipeline in future to control human VL. [Image: see text]


docid: pdctikjg

title: The social determinants of otitis media in aboriginal children in Australia: are we addressing the primary causes? A systematic content review

text: BACKGROUND: Aboriginal and Torres Strait Islander children experience some of the highest rates of otitis media in the world. Key risk factors for otitis media in Aboriginal children in Australia are largely social and environmental factors such as overcrowded housing, poverty and limited access to services. Despite this, little is known about how to address these risk factors. A scoping content review was performed to determine the relationship between social determinants of health and otitis media in Aboriginal and Torres Strait Islander children as described by peer-reviewed and grey literature. METHOD: Search terms were established for location, population and health condition. The search terms were used to conduct a literature search using six health research databases. Following the exclusion process, articles were scoped, analysed and categorised using scoping parameters and a social determinants of health framework. RESULTS: Housing-related issues were the most frequently reported determinants for otitis media (56%). Two articles (4%) directly investigated the impact of social determinants of health on rates of otitis media within Aboriginal and Torres Strait Islander children. The majority of the literature (68%) highlights social determinants as playing a key role in the high rates of otitis media seen in Aboriginal populations in Australia. There were no intervention studies targeting social determinants as a means to reduce otitis media rates among Aboriginal and Torres Strait Islander children. CONCLUSIONS: This review identifies a disconnect between otitis media drivers and the focus of public health interventions within Aboriginal and Torres Strait Islander populations. Despite consensus that social determinants play a key role in the high rates of otitis media in Aboriginal and Torres Strait Islander children, the majority of intervention studies within the literature are focussed on biomedical approaches such as research on vaccines and antibiotics. This review highlights the need for otitis media intervention studies to shift away from a purely biomedical model and toward investigating the underlying social determinants of health. By shifting interventions upstream, otitis media rates may decrease within Aboriginal and Torres Strait Islander children, as focus is shifted away from a treatment-focussed model and toward a more preventative model.


title: The malaria parasite Plasmodium falciparum in red blood cells selectively takes up serum proteins that affect host pathogenicity

text: BACKGROUND: The malaria parasite Plasmodium falciparum is a protozoan that develops in red blood cells (RBCs) and requires various host factors. For its development in RBCs, nutrients not only from the RBC cytosol but also from the extracellular milieu must be acquired. Although the utilization of host nutrients by P. falciparum has been extensively analysed, only a few studies have reported its utilization of host serum proteins. Hence, the aim of the current study was to comprehensively identify host serum proteins taken up by P. falciparum parasites and to elucidate their role in pathogenesis. METHODS: Plasmodium falciparum was cultured with human serum in vitro. Uptake of serum proteins by parasites was comprehensively determined via shotgun liquid chromatography–mass spectrometry/mass spectrometry and western blotting. The calcium ion concentration in serum was also evaluated, and coagulation activity of the parasite lysate was assessed. RESULTS: Three proteins, vitamin K-dependent protein S, prothrombin, and vitronectin, were selectively internalized under sufficient Ca(2+) levels in the culture medium. The uptake of these proteins was initiated before DNA replication, and increased during the trophozoite and schizont stages, irrespective of the assembly/disassembly of actin filaments. Coagulation assay revealed that prothrombin was activated and thereby induced blood coagulation. CONCLUSIONS: Serum proteins were taken up by parasites under culture conditions with sufficient Ca(2+) levels. This uptake phenomenon was associated with their pathogenicity.


title: Epidemiological and molecular characterization of Streptococcus pneumoniae carriage strains in pre-school children in Arkhangelsk, northern European Russia, prior to the introduction of conjugate pneumococcal vaccines

text: BACKGROUND: The 13-valent Pneumococcal Conjugate Vaccine (PCV-13) was introduced in the National Immunization Programme (NIP) schedule in Russia in March 2014. Previously, the 7-valent Pneumococcal Conjugate Vaccine (PCV-7) was marketed in Russia in 2009 but has never been offered for mass vaccination. A carriage study was performed among children in Arkhangelsk in 2006. The objective was to determine the prevalence of carriage, serotype distribution, antimicrobial susceptibility and the molecular structure of Streptococcus pneumoniae strains before marketing and introduction of PCV-13. METHODS: A cross-sectional study was conducted on a cluster-randomized sample of children and a self-administrated questionnaire for parents/guardians. Nasopharyngeal samples were collected from 438 children younger than 7 years attending nurseries and kindergartens in the Arkhangelsk region, Russia. Detailed demographic data, as well as information about the child’s health, traveling, exposure to antimicrobials within the last 3 months and anthropometric measurements were collected for all study subjects. Variables extracted from the questionnaire were analysed using statistic regression models to estimate the risk of carriage. All pneumococcal isolates were examined with susceptibility testing, serotyping and multilocus sequence typing. RESULTS: The overall prevalence of asymptomatic carriage was high and peaking at 36 months with a rate of 57%. PCV-13 covered 67.3% of the detected strains. High rates of non-susceptibility to penicillin, macrolides and multidrug resistance were associated with specific vaccine serotypes, pandemic clones, and local sequence types. Nine percent of isolates represented three globally disseminated disease-associated pandemic clones; penicillin- and macrolide-resistant clones Norway(NT)-42 and Poland(6B)-20, as well as penicillin- and macrolide-susceptible clone Netherlands(3)-31. A high level of antimicrobial consumption was noted by the study. According to the parent’s reports, 89.5% of the children used at least one antimicrobial regime since birth. None of the hypothesised predictors of S. pneumoniae carriage were statistically significant in univariable and multivariable logistic models. CONCLUSIONS: The study identified a high coverage of the PCV-13-vaccine, but serotype replacement and expansion of globally disseminated disease-associated clones with non-vaccine serotypes may be expected. Further surveillance of antimicrobial resistance and serotype distribution is therefore required.