import pytest from experiments.ablations.sequence_head.compare_decoder_probe import ( compare_payloads, write_markdown, ) def _protocol(): return { "test_data": "cb513", "train_data": "train", "eval_mask_applied": True, "test_deduplicated": False, "n_train_chains": 10846, "n_test_chains": 511, "tasks": ["ss3", "ss8", "rsa", "disorder"], "max_train_residues": 250000, "max_val_residues": 50000, "seed": 42, } def _tasks(ss3, ss8, rsa, disorder): return { "ss3": {"accuracy": ss3, "macro_f1": ss3 - 0.01}, "ss8": {"accuracy": ss8}, "rsa": {"pearson_r": rsa}, "disorder": {"mcc": disorder}, } def test_comparison_computes_level_deltas_and_keeps_esm_reference(tmp_path): baseline = { "protocol": _protocol(), "results": { "ZEST-L0": _tasks(0.60, 0.40, 0.30, 0.05), "ZEST-L1": _tasks(0.61, 0.41, 0.31, 0.06), "ZEST-L2": _tasks(0.62, 0.42, 0.32, 0.07), "esm2_35M": _tasks(0.77, 0.62, 0.60, 0.05), }, } decoder = { "protocol": _protocol(), "results": { "ZEST-L0": _tasks(0.60, 0.40, 0.30, 0.05), "ZEST-L1": _tasks(0.66, 0.46, 0.36, 0.08), "ZEST-L2": _tasks(0.72, 0.52, 0.42, 0.09), }, } comparison = compare_payloads(baseline, decoder) assert comparison["levels"]["L0"]["SS3 accuracy"]["delta"] == pytest.approx(0.0) assert comparison["levels"]["L2"]["SS3 accuracy"]["delta"] == pytest.approx(0.10) assert comparison["levels"]["L2"]["RSA Pearson r"]["delta"] == pytest.approx(0.10) assert comparison["esm_reference"]["esm2_35M"]["SS8 accuracy"] == pytest.approx(0.62) path = tmp_path / "comparison.md" write_markdown(path, comparison, "baseline.json", "decoder.json", 7800, 2) text = path.read_text() assert "Checkpoint step**: 7800" in text assert "| SS3 accuracy | 0.6200 | 0.7200 | +0.1000 |" in text assert "esm2_35M" in text def test_comparison_rejects_incompatible_probe_protocols(): baseline = {"protocol": _protocol(), "results": {}} changed = _protocol() changed["max_train_residues"] = 100000 decoder = {"protocol": changed, "results": {}} with pytest.raises(ValueError, match="max_train_residues"): compare_payloads(baseline, decoder)