Race condition when building with Meson

Opening this to track it in an issue rather than seeing it appear in spread-out PRs.

The error looks like this:
```
[61/249] Compiling Cython source sklearn/linear_model/_sgd_fast.pyx
FAILED: sklearn/linear_model/_sgd_fast.cpython-312-darwin.so.p/sklearn/linear_model/_sgd_fast.pyx.c
cython -M --fast-fail -3 '-X language_level=3' '-X boundscheck=False' '-X wraparound=False' '-X initializedcheck=False' '-X nonecheck=False' '-X cdivision=True' '-X profile=False' --include-dir /Users/runner/work/1/s/build/cp312 sklearn/linear_model/_sgd_fast.pyx -o sklearn/linear_model/_sgd_fast.cpython-312-darwin.so.p/sklearn/linear_model/_sgd_fast.pyx.c


from cython cimport floating
from libc.math cimport exp, fabs, isfinite, log, pow, INFINITY

from ..utils._typedefs cimport uint32_t
^
------------------------------------------------------------

sklearn/linear_model/_sgd_fast.pyx:9:0: relative cimport from non-package directory is not allowed
```

or like this:
```
[60/249] Compiling Cython source /Users/runner/work/1/s/sklearn/cluster/_hdbscan/_linkage.pyx
  FAILED: sklearn/cluster/_hdbscan/_linkage.cpython-312-darwin.so.p/sklearn/cluster/_hdbscan/_linkage.pyx.c
  cython -M --fast-fail -3 '-X language_level=3' '-X boundscheck=False' '-X wraparound=False' '-X initializedcheck=False' '-X nonecheck=False' '-X cdivision=True' '-X profile=False' --include-dir /Users/runner/work/1/s/build/cp312 /Users/runner/work/1/s/sklearn/cluster/_hdbscan/_linkage.pyx -o sklearn/cluster/_hdbscan/_linkage.cpython-312-darwin.so.p/sklearn/cluster/_hdbscan/_linkage.pyx.c

  Error compiling Cython file:
  ------------------------------------------------------------
  ...

  cimport numpy as cnp
  from libc.float cimport DBL_MAX

  import numpy as np
  from ...metrics._dist_metrics cimport DistanceMetric64
  ^
  ------------------------------------------------------------

  /Users/runner/work/1/s/sklearn/cluster/_hdbscan/_linkage.pyx:38:0: 'sklearn/metrics/_dist_metrics.pxd' not found
```

Some files `__init__.py` of `.pxd` need to be copied to the Meson build dir before the extension using `cimport` can be built. Since the Meson (or rather ninja) build order is based on dependencies (there is no way to tweak the build order https://github.com/ninja-build/ninja/issues/232), when you are unlucky it does not happen in the right order and the file is not found. Not clear to me right now whether this is a Meson issue or not.

For some unknown reason, until now this has always happened in the no-OpenMP build. I tried to reproduce on OSX with the no-OpenMP lock-file but I did not manage to reproduce. 

Occurences of this:
- https://github.com/scikit-learn/scikit-learn/pull/28757#issuecomment-2034059380 fixed by https://github.com/scikit-learn/scikit-learn/pull/28789
- https://github.com/scikit-learn/scikit-learn/pull/28797#issuecomment-2046566181 and https://github.com/scikit-learn/scikit-learn/pull/28815#issuecomment-2049985852, should be fixed by https://github.com/scikit-learn/scikit-learn/pull/28821
- https://github.com/scikit-learn/scikit-learn/issues/28863#issuecomment-2070062508, should be fixed by https://github.com/scikit-learn/scikit-learn/pull/29068
- https://github.com/scikit-learn/scikit-learn/pull/28980#issuecomment-2101303175, should be fixed by https://github.com/scikit-learn/scikit-learn/pull/29068

COMMENT:
Let's closed this one and reopen if this ever happens again. It looks like this has not happened in a some time so :crossed_fingers:

Labels: Build / CI