random Segfaults on distance_transform_edt with Intel 12 Alder lake (E-Core enabled)

Hi everyone

I am currently training a image segmentation network with PyTorch evaluated with hausdorff distance loss. To calculate hausdorff loss, I am using distance_transform_edt from scipy.ndimage
associated with morpholopy.py provided by scikit-learn.

My training script works well on other platforms, including PC(Intel i5-9400F, RTX 2060, Windows 10), Server 1 (AMD Ryzen 7 2700X, RTX A4000, Fedora 33), Server 2 (AMD Ryzen 7 3700X, RTX A4000, Fedora 34).

However, when I try to train my model on my linux PC (Intel i7-12700K, RTX 3080Ti, Manjaro, Linux Core: 5.16), my computer crashs several times. Mostly just training terminated with out exception, and it shows Segmentation fault related to threading.py, queues.py, morphology.py (details describe below), and sometimes it even causes linux kernel panic so I have to force reboot for getting control.

It occurs randomly, I have tried to install Ubuntu 20.04 LTS with linux kernel 5.15 or 5.16, install PyTorch Nightly version, install scikit-learn-intelex, install latest numpy with mkl, but it still happens.

No evidence of over-temperature, GPU memory overflow can be observed by utilizing sensors and nvidia-smi command.

I have noticed that on Intel 12th Alder lake some architecture have been changed to improve performance so that seems suspicious.

Any idea what I can do?

Thanks in advance.

### Steps/Code to Reproduce

```python
import os
import scipy.signal
import torch
from torch import nn
from scipy.ndimage import distance_transform_edt
import torch.nn.functional as F
from matplotlib import pyplot as plt
from torch import Tensor
import numpy as np
from torch.autograd import Variable

...

class HDDTBinaryLoss(nn.Module):
    def __init__(self):
        """
        Ref: https://arxiv.org/pdf/1904.10030v1.pdf
        """
        super(HDDTBinaryLoss, self).__init__()

    def compute_edts_forhdloss(self, segmentation):
        res = np.zeros(segmentation.shape)
        for i in range(segmentation.shape[0]):
            posmask = segmentation[i]
            negmask = ~posmask
            res[i] = distance_transform_edt(posmask) + distance_transform_edt(negmask)
        return res

    def forward(self, net_output, target):
        """
        net_output: (batch, 2, x, y, z)
        target: ground truth, shape:(batch_size, 1, x, y, z)
        """
        predict_result = net_output.float()
        ground_truth = target.float()
        predict_dist = self.compute_edts_forhdloss(predict_result.detach().cpu().numpy() > 0.5)
        ground_truth_dist = self.compute_edts_forhdloss(ground_truth.detach().cpu().numpy() > 0.5)
        pred_error = (ground_truth - predict_result) ** 2
        dist = predict_dist**2 + ground_truth_dist**2
        dist = torch.from_numpy(dist)
        if dist.device != pred_error.device:
            dist = dist.to(pred_error.device).float()
        multipled = torch.einsum("bxyz,bxyz->bxyz", pred_error, dist)

        return hd_loss
```

### Expected Results

I can get numerical result correctly

### Actual Results

```
Start Validation
Epoch 32/2000: 100%|█████████████████████████████████| 99/99 [00:12<00:00, 7.67it/s, f_h=0.129, hd_h=0.0341, total_loss=0.163]
Finish Validation
Epoch:32/2000
Total Loss: 0.4968 || Val Loss: 0.0538
Epoch 33/2000: 25%|██████ | 201/800 [00:35<01:46, 5.64it/s, Total=0.13, f_h=0.106, hd_h=0.0239, s/step=0.53]

Fatal Python error: Segmentation fault

Thread 0x00007fbf7ba00640 (most recent call first):
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 302 in wait
File “.conda/envs/Torch/lib/python3.8/multiprocessing/queues.py”, line 227 in _feed
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 870 in run
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 932 in _bootstrap_inner
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 890 in _bootstrap

Thread 0x00007fbf7a0b5640 (most recent call first):
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 302 in wait
File “.conda/envs/Torch/lib/python3.8/multiprocessing/queues.py”, line 227 in _feed
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 870 in run
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 932 in _bootstrap_inner
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 890 in _bootstrap

Thread 0x00007fbf79530640 (most recent call first):
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 302 in wait
File “.conda/envs/Torch/lib/python3.8/multiprocessing/queues.py”, line 227 in _feed
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 870 in run
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 932 in _bootstrap_inner
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 890 in _bootstrap

Thread 0x00007fbf7ac3a640 (most recent call first):
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 302 in wait
File “.conda/envs/Torch/lib/python3.8/multiprocessing/queues.py”, line 227 in _feed
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 870 in run
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 932 in _bootstrap_inner
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 890 in _bootstrap

Thread 0x00007fbf75fff640 (most recent call first):
〈no Python frame〉

Thread 0x00007fbf7c585640 (most recent call first):
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 306 in wait
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 558 in wait
File “.conda/envs/Torch/lib/python3.8/site-packages/tqdm/_monitor.py”, line 60 in run
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 932 in _bootstrap_inner
File “.conda/envs/Torch/lib/python3.8/threading.py”, line 890 in _bootstrap

Current thread 0x00007fc078adf380 (most recent call first):
File “.conda/envs/Torch/lib/python3.8/site-packages/scipy/ndimage/morphology.py”, line 2299 in distance_transform_edt
File “training_utils.py”, line 190 in compute_edts_forhdloss
File “training_utils.py”, line 203 in forward
File “.conda/envs/Torch/lib/python3.8/site-packages/torch/nn/modules/module.py”, line 1102 in _call_impl
File “training_script.py”, line 68 in fit_epochs
File “training_script.py”, line 296 in module
```

-----------------------------

dmesg:

```
[Wed Mar  9 12:37:32 2022] audit: type=1701 audit(1646800652.729:189): auid=1000 uid=1000 gid=1000 ses=4 subj==unconfined pid=1925 comm="python" exe="/home/zhcsoft/anaconda3/envs/Torch/bin/python3.9" sig=11 res=1
[Wed Mar  9 12:37:32 2022] audit: type=1334 audit(1646800652.732:190): prog-id=28 op=LOAD
[Wed Mar  9 12:37:32 2022] audit: type=1334 audit(1646800652.732:191): prog-id=29 op=LOAD
[Wed Mar  9 12:37:32 2022] audit: type=1334 audit(1646800652.732:192): prog-id=30 op=LOAD
[Wed Mar  9 12:37:32 2022] audit: type=1130 audit(1646800652.732:193): pid=1 uid=0 auid=4294967295 ses=4294967295 subj==unconfined msg='unit=systemd-coredump@2-14749-0 comm="systemd" exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=? res=success'
[Wed Mar  9 12:37:36 2022] audit: type=1131 audit(1646800656.932:194): pid=1 uid=0 auid=4294967295 ses=4294967295 subj==unconfined msg='unit=systemd-coredump@2-14749-0 comm="systemd" exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=? res=success'
[Wed Mar  9 12:37:36 2022] audit: type=1334 audit(1646800657.046:195): prog-id=0 op=UNLOAD
[Wed Mar  9 12:37:36 2022] audit: type=1334 audit(1646800657.046:196): prog-id=0 op=UNLOAD
[Wed Mar  9 12:37:36 2022] audit: type=1334 audit(1646800657.046:197): prog-id=0 op=UNLOAD
```

-----------------------------

gdb bt:

<details>

```
gdb python

GNU gdb (GDB) 11.2
Copyright (C) 2022 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Type "show copying" and "show warranty" for details.
This GDB was configured as "x86_64-pc-linux-gnu".

Type "apropos word" to search for commands related to "word"...
Reading symbols from python...

(gdb) run train_script.py
Starting program: ~/.conda/envs/Torch/bin/python train_script.py

[Thread debugging using libthread_db enabled]
Using host libthread_db library "/usr/lib/libthread_db.so.1".
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Epoch 1/2000:   0%|                                                                                      | 0/800 [00:00<?, ?it/s<class 'dict'>]
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Epoch 1/2000: 801it [02:08,  6.25it/s, Total=0.686, f_h=0.166, hd_h=0.52, s/step=0.328]                                                        
Start Validation
Epoch 1/2000:   0%|                                                                                       | 0/99 [00:00<?, ?it/s<class 'dict'>]
[Thread 0x7ffefb5ed640 (LWP 4086) exited]
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[New Thread 0x7fff005ef640 (LWP 4447)]
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Epoch 1/2000: 100%|█████████████████████████████████████████████████████| 99/99 [00:11<00:00,  8.82it/s, f_h=0.197, hd_h=13.1, total_loss=13.3]
[Thread 0x7fff005ef640 (LWP 4447) exited]
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Finish Validation
Epoch:1/2000
Total Loss: 0.2286 || Val Loss: 4.3819 
Saving state, iter: 1
Epoch 2/2000:   0%|                                                                                      | 0/800 [00:00<?, ?it/s<class 'dict'>]
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Epoch 2/2000:  95%|███████████████████████████████████████▊  | 759/800 [02:02<00:06,  6.21it/s, Total=14.6, f_h=0.157, hd_h=14.4, s/step=0.481]

Thread 1 "python" received signal SIGSEGV, Segmentation fault.
convertitem (arg=0x7ffeb3c0fcf0, p_format=0x7fffffffc528, p_va=0x7fffffffc790, flags=0, levels=0x7fffffffc5c0, msgbuf=<optimized out>, bufsize=256, freelist=0x7fffffffc530) at /tmp/build/80754af9/python-split_1631797238431/work/Python/getargs.c:601
601     /tmp/build/80754af9/python-split_1631797238431/work/Python/getargs.c: No such file or directory.

(gdb) bt

#0  convertitem (arg=0x7ffeb3c0fcf0, p_format=0x7fffffffc528, p_va=0x7fffffffc790, flags=0, levels=0x7fffffffc5c0, msgbuf=<optimized out>, 
    bufsize=256, freelist=0x7fffffffc530) at /tmp/build/80754af9/python-split_1631797238431/work/Python/getargs.c:601
#1  0x0000555555681bbf in vgetargs1_impl (compat_args=<optimized out>, stack=0x7fff2766c498, nargs=3, format=<optimized out>, 
    p_va=0x7fffffffc790, flags=0) at /tmp/build/80754af9/python-split_1631797238431/work/Python/getargs.c:391
#2  0x0000555555713346 in vgetargs1 (flags=0, p_va=0x7fffffffc790, format=<optimized out>, args=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/getargs.c:434
#3  PyArg_ParseTuple (args=<optimized out>, format=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/getargs.c:129
#4  0x00007ffebead89e6 in ?? ()
   from ~/.conda/envs/Torch/lib/python3.9/site-packages/scipy/ndimage/_nd_image.cpython-39-x86_64-linux-gnu.so
#5  0x00005555556c8738 in cfunction_call (func=0x7ffebeb586d0, args=<optimized out>, kwargs=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/methodobject.c:552
#6  0x00005555556989ef in _PyObject_MakeTpCall (tstate=0x5555559183f0, callable=0x7ffebeb586d0, args=<optimized out>, nargs=<optimized out>, 
    keywords=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:191
#7  0x0000555555722d89 in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=0x55555a9cf078, callable=<optimized out>, 
    tstate=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:116
#8  PyObject_Vectorcall () at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:127
#9  call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, tstate=0x5555559183f0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:5075
--Type <RET> for more, q to quit, c to continue without paging--
#10 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=0x55555a9ceea0, throwflag=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:3487
#11 0x00005555556d68e2 in _PyEval_EvalFrame () at /tmp/build/80754af9/python-split_1631797238431/work/Include/internal/pycore_ceval.h:40
#12 _PyEval_EvalCode (tstate=<optimized out>, _co=<optimized out>, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, 
    argcount=<optimized out>, kwnames=0x0, kwargs=0x7ffeaed65930, kwcount=0, kwstep=1, defs=0x7ffebeb71aa8, defcount=5, kwdefs=0x0, 
    closure=0x0, name=<optimized out>, qualname=0x7ffef3b5dc60) at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:4327
#13 0x00005555556d7527 in _PyFunction_Vectorcall (func=<optimized out>, stack=<optimized out>, nargsf=<optimized out>, 
    kwnames=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:396
#14 0x000055555564eebb in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=0x7ffeaed65928, callable=0x7ffebea3f3a0, 
    tstate=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:118
#15 PyObject_Vectorcall () at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:127
#16 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, tstate=0x5555559183f0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:5075
#17 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=0x7ffeaed65780, throwflag=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:3518
#18 0x0000555555702074 in _PyEval_EvalFrame () at /tmp/build/80754af9/python-split_1631797238431/work/Include/internal/pycore_ceval.h:40
#19 function_code_fastcall (globals=<optimized out>, nargs=<optimized out>, args=<optimized out>, co=<optimized out>, tstate=0x5555559183f0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:330
#20 _PyFunction_Vectorcall (kwnames=<optimized out>, nargsf=<optimized out>, stack=0x7ffeaed47c08, func=0x7ffebddaf280)
--Type <RET> for more, q to quit, c to continue without paging--
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:367
#21 _PyObject_VectorcallTstate (kwnames=<optimized out>, nargsf=<optimized out>, args=0x7ffeaed47c08, callable=0x7ffebddaf280, 
    tstate=0x5555559183f0) at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:118
#22 method_vectorcall (method=<optimized out>, args=0x7ffeaed47c10, nargsf=<optimized out>, kwnames=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/classobject.c:53
#23 0x000055555564dfdc in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=0x7ffeaed47c10, callable=0x7fff22ddbc40, 
    tstate=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:118
#24 PyObject_Vectorcall () at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:127
#25 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, tstate=0x5555559183f0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:5075
#26 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=0x7ffeaed47a40, throwflag=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:3487
#27 0x00005555556d7753 in _PyEval_EvalFrame () at /tmp/build/80754af9/python-split_1631797238431/work/Include/internal/pycore_ceval.h:40
#28 function_code_fastcall (globals=<optimized out>, nargs=<optimized out>, args=<optimized out>, co=<optimized out>, tstate=0x5555559183f0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:330
#29 _PyFunction_Vectorcall (func=<optimized out>, stack=<optimized out>, nargsf=<optimized out>, kwnames=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:367
#30 0x000055555570295b in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=3, args=0x7fffffffd0a0, callable=0x7ffebddaf310, 
    tstate=0x5555559183f0) at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:118
--Type <RET> for more, q to quit, c to continue without paging--
#31 method_vectorcall (method=<optimized out>, args=0x7fff276900d8, nargsf=<optimized out>, kwnames=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/classobject.c:83
#32 0x000055555568c8f8 in PyVectorcall_Call (kwargs=<optimized out>, tuple=0x7fff276900c0, callable=0x7fff27699240)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:231
#33 _PyObject_Call (tstate=<optimized out>, callable=0x7fff27699240, args=0x7fff276900c0, kwargs=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:266
#34 0x0000555555720740 in PyObject_Call (kwargs=0x7fff2768d580, args=0x7fff276900c0, callable=0x7fff27699240)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:293
#35 do_call_core (kwdict=0x7fff2768d580, callargs=0x7fff276900c0, func=0x7fff27699240, tstate=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:5123
#36 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=0x5556487959e0, throwflag=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:3580
#37 0x00005555556d68e2 in _PyEval_EvalFrame () at /tmp/build/80754af9/python-split_1631797238431/work/Include/internal/pycore_ceval.h:40
#38 _PyEval_EvalCode (tstate=<optimized out>, _co=<optimized out>, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, 
    argcount=<optimized out>, kwnames=0x0, kwargs=0x7fffffffd488, kwcount=0, kwstep=1, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0, 
    name=<optimized out>, qualname=0x7ffff3f6d080) at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:4327
#39 0x00005555556d7527 in _PyFunction_Vectorcall (func=<optimized out>, stack=<optimized out>, nargsf=<optimized out>, 
    kwnames=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:396
#40 0x00005555556c87ca in _PyObject_FastCallDictTstate (tstate=0x5555559183f0, callable=0x7ffff3f03310, args=<optimized out>, 
--Type <RET> for more, q to quit, c to continue without paging--
    nargsf=<optimized out>, kwargs=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:118
#41 0x00005555556d2275 in _PyObject_Call_Prepend (kwargs=0x0, args=0x7fff2766cc80, obj=<optimized out>, callable=0x7ffff3f03310, 
    tstate=0x5555559183f0) at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:489
#42 slot_tp_call (self=<optimized out>, args=0x7fff2766cc80, kwds=0x0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Objects/typeobject.c:6718
#43 0x00005555556989ef in _PyObject_MakeTpCall (tstate=0x5555559183f0, callable=0x7ffeb509efa0, args=<optimized out>, nargs=<optimized out>, 
    keywords=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:191
#44 0x000055555571e8b4 in _PyObject_VectorcallTstate (kwnames=0x0, nargsf=<optimized out>, args=0x555640987b78, callable=<optimized out>, 
    tstate=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:116
#45 PyObject_Vectorcall () at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:127
#46 call_function (kwnames=0x0, oparg=<optimized out>, pp_stack=<synthetic pointer>, tstate=0x5555559183f0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:5075
#47 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=0x5556409878c0, throwflag=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:3518
#48 0x00005555556d68e2 in _PyEval_EvalFrame () at /tmp/build/80754af9/python-split_1631797238431/work/Include/internal/pycore_ceval.h:40
#49 _PyEval_EvalCode (tstate=<optimized out>, _co=<optimized out>, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, 
    argcount=<optimized out>, kwnames=0x7ffff7452a18, kwargs=0x555555992378, kwcount=2, kwstep=1, defs=0x7ffff75289e8, defcount=1, 
    kwdefs=0x0, closure=0x0, name=<optimized out>, qualname=0x7ffff743a4f0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:4327
--Type <RET> for more, q to quit, c to continue without paging--
#50 0x00005555556d7527 in _PyFunction_Vectorcall (func=<optimized out>, stack=<optimized out>, nargsf=<optimized out>, 
    kwnames=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Objects/call.c:396
#51 0x000055555564e90b in _PyObject_VectorcallTstate (kwnames=0x7ffff7452a00, nargsf=<optimized out>, args=<optimized out>, 
    callable=0x7ffff7435ee0, tstate=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:118
#52 PyObject_Vectorcall () at /tmp/build/80754af9/python-split_1631797238431/work/Include/cpython/abstract.h:127
#53 call_function (kwnames=0x7ffff7452a00, oparg=<optimized out>, pp_stack=<synthetic pointer>, tstate=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:5075
#54 _PyEval_EvalFrameDefault (tstate=<optimized out>, f=0x5555559921c0, throwflag=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:3535
#55 0x00005555556d68e2 in _PyEval_EvalFrame () at /tmp/build/80754af9/python-split_1631797238431/work/Include/internal/pycore_ceval.h:40
#56 _PyEval_EvalCode (tstate=<optimized out>, _co=<optimized out>, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, 
    argcount=<optimized out>, kwnames=0x0, kwargs=0x0, kwcount=0, kwstep=2, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0, 
    name=<optimized out>, qualname=0x0) at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:4327
#57 0x0000555555788bac in _PyEval_EvalCodeWithName (qualname=0x0, name=0x0, closure=0x0, kwdefs=0x0, defcount=0, defs=0x0, kwstep=2, 
    kwcount=0, kwargs=<optimized out>, kwnames=<optimized out>, argcount=<optimized out>, args=<optimized out>, locals=<optimized out>, 
    globals=<optimized out>, _co=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:4359
#58 PyEval_EvalCodeEx (_co=<optimized out>, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=<optimized out>, 
    kws=<optimized out>, kwcount=0, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:4375
--Type <RET> for more, q to quit, c to continue without paging--
#59 0x00005555556d79eb in PyEval_EvalCode (co=co@entry=0x7ffff754f500, globals=globals@entry=0x7ffff75d5e40, 
    locals=locals@entry=0x7ffff75d5e40) at /tmp/build/80754af9/python-split_1631797238431/work/Python/ceval.c:826
#60 0x0000555555788c5b in run_eval_code_obj (tstate=0x5555559183f0, co=0x7ffff754f500, globals=0x7ffff75d5e40, locals=0x7ffff75d5e40)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/pythonrun.c:1219
#61 0x00005555557bc705 in run_mod (mod=<optimized out>, filename=<optimized out>, globals=0x7ffff75d5e40, locals=0x7ffff75d5e40, 
    flags=<optimized out>, arena=<optimized out>) at /tmp/build/80754af9/python-split_1631797238431/work/Python/pythonrun.c:1240
#62 0x000055555566160d in pyrun_file (fp=0x555555911470, filename=0x7ffff7435a50, start=<optimized out>, globals=0x7ffff75d5e40, 
    locals=0x7ffff75d5e40, closeit=1, flags=0x7fffffffdb68) at /tmp/build/80754af9/python-split_1631797238431/work/Python/pythonrun.c:1138
#63 0x00005555557c149f in pyrun_simple_file (flags=0x7fffffffdb68, closeit=1, filename=0x7ffff7435a50, fp=0x555555911470)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/pythonrun.c:449
#64 PyRun_SimpleFileExFlags (fp=0x555555911470, filename=<optimized out>, closeit=1, flags=0x7fffffffdb68)
    at /tmp/build/80754af9/python-split_1631797238431/work/Python/pythonrun.c:482
#65 0x00005555557c1c7f in pymain_run_file (cf=0x7fffffffdb68, config=0x555555916b50)
    at /tmp/build/80754af9/python-split_1631797238431/work/Modules/main.c:379
#66 pymain_run_python (exitcode=0x7fffffffdb60) at /tmp/build/80754af9/python-split_1631797238431/work/Modules/main.c:604
#67 Py_RunMain () at /tmp/build/80754af9/python-split_1631797238431/work/Modules/main.c:683
#68 0x00005555557c1d79 in Py_BytesMain (argc=<optimized out>, argv=<optimized out>)
    at /tmp/build/80754af9/python-split_1631797238431/work/Modules/main.c:1129
#69 0x00007ffff7cc3310 in __libc_start_call_main () from /usr/lib/libc.so.6
--Type <RET> for more, q to quit, c to continue without paging--
#70 0x00007ffff7cc33c1 in __libc_start_main_impl () from /usr/lib/libc.so.6
#71 0x0000555555746bc3 in _start ()
```

</details>

### Versions

```shell
(Same problem occurs on python 3.9)

System:
   python: 3.9.7 (default, Sep 16 2021, 13:09:58)  [GCC 7.5.0]
   executable: /home/zhcsoft/anaconda3/envs/Torch/bin/python
   machine: Linux-5.16.11-2-MANJARO-x86_64-with-glibc2.35

Python dependencies:
          pip: 22.0.3
   setuptools: 58.0.4
      sklearn: 1.0.2
        numpy: 1.22.3
        scipy: 1.8.0
       Cython: None
       pandas: 1.4.1
   matplotlib: 3.5.1
       joblib: 1.1.0
threadpoolctl: 3.1.0

Built with OpenMP: True
```

COMMENT:
It seems that this problem is unrelated to scikit-learn because it happens in a scipy call and I cannot see any sklearn related call in the tracebacks:

```
File “.conda/envs/Torch/lib/python3.8/site-packages/scipy/ndimage/morphology.py”, line 2299 in distance_transform_edt
```

but it could be related to OpenBLAS or numpy that do have CPU-specific optimizations. Hence the output of threadpoolctl might help clarify which OpenBLAS version you are using.

Labels: Bug