Repository: predict-idlab/powershap (language: python)

Issue:
Release with numpy >=1.21
Wondering if there's a timeline for a release that incorporates the usage of numpy>=1.21? Main motivations being:
1. Security vulnerabilities 
2. Installing `poweshap` in a python environment becomes troublesome, especially when other libraries in the environment set hard requirements on numpy>1.21


Discussion / hints:
Hi @deepandas11,

Thx for your suggestion! I completely agree with your motivation.
The main reason why we fixated our dependencies was to support python 3.7 (to support sklearn v0 as well). 

However, as major libraries (pandas, numpy, sklearn) are dropping support for Python 3.7, I think it is fine for us to do the same (certainly in the light of security vulnerabilities).

I'll look into it in the near future :)

Cheers,
Jeroen

Fix patch:
diff --git a/poetry.lock b/poetry.lock
index 6c80e16..49a14f9 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,6 +1,6 @@
 [[package]]
 name = "absl-py"
-version = "1.1.0"
+version = "1.2.0"
 description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py."
 category = "dev"
 optional = false
@@ -19,7 +19,7 @@ six = ">=1.6.1,<2.0"
 
 [[package]]
 name = "atomicwrites"
-version = "1.4.0"
+version = "1.4.1"
 description = "Atomic file writes."
 category = "dev"
 optional = false
@@ -74,11 +74,11 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "charset-normalizer"
-version = "2.0.12"
+version = "2.1.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "dev"
 optional = false
-python-versions = ">=3.5.0"
+python-versions = ">=3.6.0"
 
 [package.extras]
 unicode_backport = ["unicodedata2"]
@@ -101,7 +101,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "coverage"
-version = "6.4.1"
+version = "6.4.2"
 description = "Code coverage measurement for Python"
 category = "dev"
 optional = false
@@ -131,7 +131,7 @@ python-versions = "*"
 
 [[package]]
 name = "fonttools"
-version = "4.33.3"
+version = "4.34.4"
 description = "Tools to manipulate font files"
 category = "main"
 optional = false
@@ -161,7 +161,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "google-auth"
-version = "2.8.0"
+version = "2.9.1"
 description = "Google Authentication Library"
 category = "dev"
 optional = false
@@ -220,7 +220,7 @@ test = ["pytest (>=7)", "pytest-mock (>=3)", "mock (>=4)", "pytest-cov", "covera
 
 [[package]]
 name = "grpcio"
-version = "1.46.3"
+version = "1.47.0"
 description = "HTTP/2-based RPC framework"
 category = "dev"
 optional = false
@@ -230,7 +230,7 @@ python-versions = ">=3.6"
 six = ">=1.5.2"
 
 [package.extras]
-protobuf = ["grpcio-tools (>=1.46.3)"]
+protobuf = ["grpcio-tools (>=1.47.0)"]
 
 [[package]]
 name = "h5py"
@@ -253,9 +253,9 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "importlib-metadata"
-version = "4.11.4"
+version = "4.12.0"
 description = "Read metadata from Python packages"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 
@@ -266,7 +266,7 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
 perf = ["ipython"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
 
 [[package]]
 name = "iniconfig"
@@ -311,7 +311,7 @@ tests = ["pandas", "pillow", "tensorflow", "keras", "pytest", "pytest-xdist", "p
 
 [[package]]
 name = "kiwisolver"
-version = "1.4.3"
+version = "1.4.4"
 description = "A fast implementation of the Cassowary constraint solver"
 category = "main"
 optional = false
@@ -346,19 +346,19 @@ dask = ["dask[array] (>=2.0.0)", "dask[dataframe] (>=2.0.0)", "dask[distributed]
 
 [[package]]
 name = "llvmlite"
-version = "0.37.0"
+version = "0.38.1"
 description = "lightweight wrapper around basic LLVM functionality"
 category = "main"
 optional = false
-python-versions = ">=3.7,<3.10"
+python-versions = ">=3.7,<3.11"
 
 [[package]]
 name = "markdown"
-version = "3.3.7"
+version = "3.4.1"
 description = "Python implementation of Markdown."
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
@@ -387,23 +387,23 @@ setuptools_scm = ">=4"
 
 [[package]]
 name = "numba"
-version = "0.54.1"
+version = "0.55.2"
 description = "compiling Python code using LLVM"
 category = "main"
 optional = false
-python-versions = ">=3.7,<3.10"
+python-versions = ">=3.7,<3.11"
 
 [package.dependencies]
-llvmlite = ">=0.37.0rc1,<0.38"
-numpy = ">=1.17,<1.21"
+llvmlite = ">=0.38.0rc1,<0.39"
+numpy = ">=1.18,<1.23"
 
 [[package]]
 name = "numpy"
-version = "1.20.3"
+version = "1.21.6"
 description = "NumPy is the fundamental package for array computing with Python."
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.7,<3.11"
 
 [[package]]
 name = "oauthlib"
@@ -481,19 +481,19 @@ test = ["pytest", "pytest-cov", "scipy"]
 
 [[package]]
 name = "pillow"
-version = "9.1.1"
+version = "9.2.0"
 description = "Python Imaging Library (Fork)"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinx-rtd-theme (>=1.0)", "sphinxext-opengraph"]
+docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"]
 tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "plotly"
-version = "5.8.2"
+version = "5.9.0"
 description = "An open-source, interactive data visualization library for Python"
 category = "main"
 optional = false
@@ -554,11 +554,14 @@ pyasn1 = ">=0.4.6,<0.5.0"
 
 [[package]]
 name = "pyparsing"
-version = "2.4.7"
-description = "Python parsing module"
+version = "3.0.9"
+description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 category = "main"
 optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+python-versions = ">=3.6.8"
+
+[package.extras]
+diagrams = ["railroad-diagrams", "jinja2"]
 
 [[package]]
 name = "pytest"
@@ -618,7 +621,7 @@ python-versions = "*"
 
 [[package]]
 name = "requests"
-version = "2.28.0"
+version = "2.28.1"
 description = "Python HTTP for Humans."
 category = "dev"
 optional = false
@@ -626,13 +629,13 @@ python-versions = ">=3.7, <4"
 
 [package.dependencies]
 certifi = ">=2017.4.17"
-charset-normalizer = ">=2.0.0,<2.1.0"
+charset-normalizer = ">=2,<3"
 idna = ">=2.5,<4"
 urllib3 = ">=1.21.1,<1.27"
 
 [package.extras]
 socks = ["PySocks (>=1.5.6,!=1.5.7)"]
-use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
+use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
 name = "requests-oauthlib"
@@ -693,15 +696,17 @@ numpy = ">=1.16.5,<1.23.0"
 
 [[package]]
 name = "setuptools-scm"
-version = "6.4.2"
+version = "7.0.5"
 description = "the blessed package to manage your versions by scm tags"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
+importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
 packaging = ">=20.0"
 tomli = ">=1.0.0"
+typing-extensions = "*"
 
 [package.extras]
 test = ["pytest (>=6.2)", "virtualenv (>20)"]
@@ -741,17 +746,6 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 
-[[package]]
-name = "sklearn"
-version = "0.0"
-description = "A set of python modules for machine learning and data mining"
-category = "main"
-optional = false
-python-versions = "*"
-
-[package.dependencies]
-scikit-learn = "*"
-
 [[package]]
 name = "slicer"
 version = "0.0.7"
@@ -925,7 +919,7 @@ telegram = ["requests"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.2.0"
+version = "4.3.0"
 description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "main"
 optional = false
@@ -933,11 +927,11 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "urllib3"
-version = "1.26.9"
+version = "1.26.10"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4"
 
 [package.extras]
 brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"]
@@ -946,11 +940,11 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "werkzeug"
-version = "2.0.3"
+version = "2.1.2"
 description = "The comprehensive WSGI web application library."
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
 watchdog = ["watchdog"]
@@ -965,879 +959,97 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [[package]]
 name = "zipp"
-version = "3.8.0"
+version = "3.8.1"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
+docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
 
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 lock-version = "1.1"
 python-versions = ">=3.7.1,<3.10"
-content-hash = "6617672ff14884e6a5224c014a9720fc52c1c83ff0606bc4ff4ee200624121b7"
+content-hash = "bf6ba6db8c6ae1a3125d8828cf252fc446b0f45f0635b939d0b64344a4a106f4"
 
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-    {file = "zipp-3.8.0-py3-none-any.whl", hash = "sha256:c4f6e5bbf48e74f7a38e7cc5b0480ff42b0ae5178957d564d18932525d5cf099"},
-    {file = "zipp-3.8.0.tar.gz", hash = "sha256:56bf8aadb83c24db6c4b577e13de374ccfb67da2078beba1d037c17980bf43ad"},
-]
+absl-py = []
+astunparse = []
+atomicwrites = []
+attrs = []
+cachetools = []
+catboost = []
+certifi = []
+charset-normalizer = []
+cloudpickle = []
+colorama = []
+coverage = []
+cycler = []
+flatbuffers = []
+fonttools = []
+gast = []
+google-auth = []
+google-auth-oauthlib = []
+google-pasta = []
+graphviz = []
+grpcio = []
+h5py = []
+idna = []
+importlib-metadata = []
+iniconfig = []
+joblib = []
+keras = []
+keras-preprocessing = []
+kiwisolver = []
+libclang = []
+lightgbm = []
+llvmlite = []
+markdown = []
+matplotlib = []
+numba = []
+numpy = []
+oauthlib = []
+opt-einsum = []
+packaging = []
+pandas = []
+patsy = []
+pillow = []
+plotly = []
+pluggy = []
+protobuf = []
+py = []
+pyasn1 = []
+pyasn1-modules = []
+pyparsing = []
+pytest = []
+pytest-cov = []
+python-dateutil = []
+pytz = []
+requests = []
+requests-oauthlib = []
+rsa = []
+scikit-learn = []
+scipy = []
+setuptools-scm = []
+shap = []
+six = []
+slicer = []
+statsmodels = []
+tenacity = []
+tensorboard = []
+tensorboard-data-server = []
+tensorboard-plugin-wit = []
+tensorflow = []
+tensorflow-estimator = []
+tensorflow-io-gcs-filesystem = []
+termcolor = []
+threadpoolctl = []
+tomli = []
+tqdm = []
+typing-extensions = []
+urllib3 = []
+werkzeug = []
+wrapt = []
+zipp = []
diff --git a/pyproject.toml b/pyproject.toml
index 80d30ea..e2c4be1 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "powershap"
-version = "0.0.7.1"
+version = "0.0.8rc2"
 description = "Feature selection using statistical significance of shap values"
 authors = ["Jarne Verhaeghe, Jeroen Van Der Donckt"]
 readme = "README.md"
@@ -10,22 +10,18 @@ keywords = ["feature selection", "shap", "data-science", "machine learning"]
 
 [tool.poetry.dependencies]
 python = ">=3.7.1,<3.10"
-numpy = "~1.20"  # To allow python 3.7.x
-pandas = "~1.3"  # To allow python 3.7.x
-sklearn = "^0.0"
 catboost = "^1.0.5"
 statsmodels = "^0.13.2"
-shap = "^0.40.0"
+numpy = "^1.21"
+pandas = "^1.3"
+shap = "^0.40"
+scikit-learn = "*"
 
 [tool.poetry.dev-dependencies]
 pytest = "^7.1.1"
 pytest-cov = "^3.0.0"
 tensorflow = "^2.8.0"
 lightgbm = "^3.3.2"
-pyparsing = "2.4.7"
-Werkzeug = "2.0.3"
-scipy = "~1.7"  # To allow python 3.7.x
-numba = "0.54.1"
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]


Test patch:
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index d7f8636..ff2b953 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -61,4 +61,4 @@ jobs:
       if: ${{ always() }}
 
     - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v1
\ No newline at end of file
+      uses: codecov/codecov-action@v1