Repository: fast-aircraft-design/FAST-OAD (language: python)

Issue:
Upgrade to FAST-OAD 1.0.0 not successfull
Hello, 
I open this issue because I tried to update my fast-oad version to the latest release. 
Through the Anaconda prompt I run "pip install --upgrade fast-oad" but the code is not installed. 
The following error appears:  

"Attempting uninstall: ruamel.yaml
    Found existing installation: ruamel-yaml 0.15.87
ERROR: Cannot uninstall 'ruamel-yaml'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall."

I tried to manually uninstall the package ruamel.yaml but this does not solve the issue. 

Thanks in advance for any help to solve the issue. 

Regards,
Alessandro Sgueglia


Discussion / hints:
Hi,

It looks like Anaconda comes with a "clone" of `ruamel.yaml` (`ruamel_yaml` and a kind of alias `ruamel-yaml`). Apparently, it is not a problem with the old version of Anaconda I had, but with the latest one, I get the same problem as you. It looks impossible to either upgrade or uninstall this package and IMHO, it is a bug in Anaconda install.

As a workaround, I would advise that you create a new virtual environment (possible through command line, but you may also do it through GUI using Anaconda navigator, see image below).
Actually, I think this a good solution, even without the `ruamel.yaml` problem, especially because FAST-OAD brings some big [changes](https://github.com/fast-aircraft-design/FAST-OAD/releases/tag/v1.0.0) compared to 0.5.4b. 
Then the advantage of the virtual environment is double:
- you keep your current working environment (with FAST-OAD 0.5.4b) untouched
- you will not get this `pip` error, since `ruamel-yaml` will not be in your new environment.

_____
_____
_Virtual environment though anaconda navigator..._

<img width="1016" alt="conda" src="https://user-images.githubusercontent.com/49477099/114355152-6a2de580-9b6f-11eb-96f4-3e2534d13e2f.png">


Fix patch:
diff --git a/docs/requirements.txt b/docs/requirements.txt
index 6ab90dcc8..65c25e9c3 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -2,20 +2,20 @@ alabaster==0.7.12; python_version >= "3.5"
 appdirs==1.4.4; python_version >= "3.6" and python_full_version >= "3.6.1"
 appnope==0.1.2; platform_system == "Darwin" and python_version >= "3.7" and sys_platform == "darwin"
 argon2-cffi==20.1.0; python_version >= "3.6"
-astroid==2.5.2; python_version >= "3.6" and python_version < "4.0"
+astroid==2.5.3; python_version >= "3.6" and python_version < "4.0"
 async-generator==1.10; python_full_version >= "3.6.1" and python_version >= "3.6"
-atomicwrites==1.4.0; python_version >= "3.5" and python_full_version < "3.0.0" and sys_platform == "win32" and (python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.5") or sys_platform == "win32" and python_version >= "3.5" and python_full_version >= "3.4.0" and (python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.5")
+atomicwrites==1.4.0; python_version >= "3.6" and python_full_version < "3.0.0" and sys_platform == "win32" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6") or sys_platform == "win32" and python_version >= "3.6" and python_full_version >= "3.4.0" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6")
 attrs==20.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 babel==2.9.0; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.5"
 backcall==0.2.0; python_version >= "3.7"
 black==19.10b0; python_version >= "3.6"
 bleach==3.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 certifi==2020.12.5; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
-cffi==1.14.5; implementation_name == "pypy" and python_version >= "3.6"
+cffi==1.14.5; python_version >= "3.6" and python_full_version >= "3.6.1" and implementation_name == "pypy"
 cfgv==3.2.0; python_full_version >= "3.6.1"
 chardet==4.0.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 click==7.1.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
-colorama==0.4.4; python_version >= "3.7" and python_full_version < "3.0.0" and sys_platform == "win32" and python_version < "4.0" and (python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.5") or sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.5.0" and python_version < "4.0" and (python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.5")
+colorama==0.4.4; python_version >= "3.7" and python_full_version < "3.0.0" and sys_platform == "win32" and python_version < "4.0" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6") or sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.5.0" and python_version < "4.0" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6")
 coverage==5.5; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
 cycler==0.10.0; python_version >= "3.7"
 decorator==4.4.2; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.2.0" and python_version >= "3.7"
@@ -25,12 +25,13 @@ docutils==0.16; python_version >= "3.6" and python_full_version < "3.0.0" or pyt
 ensure==1.0.0
 entrypoints==0.3; python_version >= "3.6"
 filelock==3.0.12; python_full_version >= "3.6.1"
-identify==2.2.2; python_full_version >= "3.6.1"
+identify==2.2.3; python_full_version >= "3.6.1"
 idna==2.10; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 imagesize==1.2.0; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.5"
-importlib-metadata==3.10.0; python_version >= "3.6" and python_version < "3.8" and python_full_version >= "3.6.1" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.4.0" and python_version >= "3.6" and python_version < "3.8") and (python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.5")
+importlib-metadata==3.10.1; python_version >= "3.6" and python_version < "3.8" and python_full_version >= "3.6.1" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.4.0" and python_version >= "3.6" and python_version < "3.8") and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6")
+iniconfig==1.1.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 ipopo==1.0.1
-ipykernel==5.5.0; python_version >= "3.6"
+ipykernel==5.5.3; python_version >= "3.6"
 ipysheet==0.4.4
 ipython-genutils==0.2.0; python_version >= "3.7"
 ipython==7.22.0; python_version >= "3.7"
@@ -38,31 +39,27 @@ ipywidgets==7.6.3
 isort==5.8.0; python_version >= "3.6" and python_version < "4.0"
 jedi==0.18.0; python_version >= "3.7"
 jinja2==2.11.3; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
-json5==0.9.5; python_version >= "3.5"
 jsonrpclib-pelix==0.4.2
 jsonschema==3.2.0
-jupyter-client==6.1.12; python_full_version >= "3.6.1" and python_version >= "3.6"
-jupyter-core==4.7.1; python_version >= "3.6"
+jupyter-client==6.2.0; python_full_version >= "3.6.1" and python_version >= "3.6"
+jupyter-core==4.7.1; python_version >= "3.6" and python_full_version >= "3.6.1"
 jupyterlab-pygments==0.1.2; python_version >= "3.6"
-jupyterlab-server==1.2.0; python_version >= "3.5"
 jupyterlab-widgets==1.0.0; python_version >= "3.6"
-jupyterlab==2.3.1; python_version >= "3.5"
 kiwisolver==1.3.1; python_version >= "3.7"
 latexcodec==2.0.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
 lazy-object-proxy==1.6.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4.0" or python_version >= "3.6" and python_version < "4.0" and python_full_version >= "3.6.0"
 lxml==4.6.3; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
 markupsafe==1.1.1; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.5"
-matplotlib==3.4.0; python_version >= "3.7"
+matplotlib==3.4.1; python_version >= "3.7"
 mccabe==0.6.1; python_version >= "3.6" and python_version < "4.0"
 mistune==0.8.4; python_version >= "3.6"
-more-itertools==8.7.0; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.5"
 nbclient==0.5.3; python_full_version >= "3.6.1" and python_version >= "3.6"
 nbconvert==6.0.7; python_version >= "3.6"
-nbformat==5.1.2; python_full_version >= "3.6.1" and python_version >= "3.6"
+nbformat==5.1.3; python_full_version >= "3.6.1" and python_version >= "3.6"
 nbval==0.9.6
-nest-asyncio==1.5.1; python_full_version >= "3.6.1" and python_version >= "3.6"
-networkx==2.5; python_version >= "3.6"
-nodeenv==1.5.0; python_full_version >= "3.6.1"
+nest-asyncio==1.5.1; python_version >= "3.6" and python_full_version >= "3.6.1"
+networkx==2.5.1; python_version >= "3.6"
+nodeenv==1.6.0; python_full_version >= "3.6.1"
 notebook==6.3.0; python_version >= "3.6"
 numpy==1.20.2; python_version >= "3.7"
 openmdao-extensions==1.0.1; python_version >= "3.6"
@@ -70,45 +67,45 @@ openmdao==3.8.0; python_version >= "3.6"
 packaging==20.9; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 pandas==1.1.5; python_full_version >= "3.6.1"
 pandocfilters==1.4.3; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
-parso==0.8.1; python_version >= "3.7"
+parso==0.8.2; python_version >= "3.7"
 pathspec==0.8.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 pexpect==4.8.0; sys_platform != "win32" and python_version >= "3.7"
 pickleshare==0.7.5; python_version >= "3.7"
-pillow==8.1.2; python_version >= "3.7"
+pillow==8.2.0; python_version >= "3.7"
 plotly==4.14.3
-pluggy==0.13.1; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.5"
-pre-commit==2.11.1; python_full_version >= "3.6.1"
-prometheus-client==0.9.0; python_version >= "3.6"
+pluggy==0.13.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
+pre-commit==2.12.0; python_full_version >= "3.6.1"
+prometheus-client==0.10.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
 prompt-toolkit==3.0.18; python_full_version >= "3.6.1" and python_version >= "3.7"
-ptyprocess==0.7.0; os_name != "nt" and python_version >= "3.7" and sys_platform != "win32"
-py==1.10.0; python_version >= "3.6" and python_full_version < "3.0.0" and implementation_name == "pypy" or python_full_version >= "3.5.0" and python_version >= "3.6" and implementation_name == "pypy"
+ptyprocess==0.7.0; sys_platform != "win32" and python_version >= "3.7" and os_name != "nt"
+py==1.10.0; python_full_version >= "3.6.1" and python_version >= "3.6" and implementation_name == "pypy"
 pybtex-docutils==1.0.0; python_version >= "3.6"
 pybtex==0.24.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.3.0" and python_version >= "3.6"
-pycparser==2.20; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+pycparser==2.20; python_version >= "3.6" and python_full_version >= "3.6.1" and implementation_name == "pypy"
 pydoe2==1.3.0; python_version >= "3.6"
 pygments==2.8.1; python_version >= "3.7"
 pylint==2.7.4; python_version >= "3.6" and python_version < "4.0"
 pyparsing==2.4.7; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.7"
 pyrsistent==0.17.3; python_version >= "3.5"
 pytest-cov==2.11.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
-pytest==5.4.3; python_version >= "3.5"
-python-dateutil==2.8.1; python_full_version >= "3.6.1" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.3.0") and (python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.3.0" and python_version >= "3.5")
+pytest==6.2.3; python_version >= "3.6"
+python-dateutil==2.8.1; python_full_version >= "3.6.1" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.3.0")
 pytz==2021.1; python_full_version >= "3.6.1" and python_version >= "3.5"
 pywin32==300; sys_platform == "win32" and python_version >= "3.6"
 pywinpty==0.5.7; os_name == "nt" and python_version >= "3.6"
 pyyaml==5.4.1; python_full_version >= "3.6.1" and python_version >= "3.6" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.6.0" and python_version >= "3.6")
-pyzmq==22.0.3; python_version >= "3.6"
-regex==2021.3.17; python_version >= "3.6"
+pyzmq==22.0.3; python_version >= "3.6" and python_full_version >= "3.6.1"
+regex==2021.4.4; python_version >= "3.6"
 requests==2.25.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 retrying==1.3.3
-ruamel.yaml.clib==0.2.2; platform_python_implementation == "CPython" and python_version < "3.10"
-ruamel.yaml==0.16.13
+ruamel.yaml.clib==0.2.2; platform_python_implementation == "CPython" and python_version < "3.10" and python_version >= "3"
+ruamel.yaml==0.17.4; python_version >= "3"
 scipy==1.6.1; python_version >= "3.7"
 send2trash==1.5.0; python_version >= "3.6"
 six==1.15.0; python_full_version >= "3.6.1" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.3.0") and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.3.0" and python_version >= "3.6") and (python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.3.0" and python_version >= "3.5") and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6")
 snowballstemmer==2.1.0; python_version >= "3.5"
-sphinx-rtd-theme==0.5.1
-sphinx==3.5.3; python_version >= "3.5"
+sphinx-rtd-theme==0.5.2
+sphinx==3.5.4; python_version >= "3.5"
 sphinxcontrib-applehelp==1.0.2; python_version >= "3.5"
 sphinxcontrib-bibtex==2.2.0; python_version >= "3.6"
 sphinxcontrib-devhelp==1.0.2; python_version >= "3.5"
@@ -120,11 +117,11 @@ strictyaml==1.4.0
 tabulate==0.8.9
 terminado==0.9.4; python_version >= "3.6"
 testpath==0.4.4; python_version >= "3.6"
-toml==0.10.2; python_full_version >= "3.6.1" and python_version >= "3.6" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4.0" or python_version >= "3.6" and python_version < "4.0" and python_full_version >= "3.3.0")
-tomlkit==0.5.11; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
-tornado==6.1; python_version >= "3.6"
-traitlets==5.0.5; python_full_version >= "3.6.1" and python_version >= "3.7"
-typed-ast==1.4.2; implementation_name == "cpython" and python_version < "3.8" and python_version >= "3.6"
+toml==0.10.2; python_full_version >= "3.6.1" and python_version >= "3.6" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.3.0" and python_version >= "3.6") and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4.0" or python_version >= "3.6" and python_version < "4.0" and python_full_version >= "3.3.0") and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6")
+tomlkit==0.7.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
+tornado==6.1; python_version >= "3.6" and python_full_version >= "3.6.1"
+traitlets==5.0.5; python_version >= "3.7" and python_full_version >= "3.6.1"
+typed-ast==1.4.3; implementation_name == "cpython" and python_version < "3.8" and python_version >= "3.6"
 typing-extensions==3.7.4.3; python_version >= "3.6" and python_version < "3.8"
 urllib3==1.26.4; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.6"
 virtualenv==20.4.3; python_full_version >= "3.6.1"
diff --git a/poetry.lock b/poetry.lock
index f3c0c190b..f77a0588b 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -41,7 +41,7 @@ tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"]
 
 [[package]]
 name = "astroid"
-version = "2.5.2"
+version = "2.5.3"
 description = "An abstract syntax tree for Python with inference support."
 category = "dev"
 optional = false
@@ -268,7 +268,7 @@ python-versions = "*"
 
 [[package]]
 name = "identify"
-version = "2.2.2"
+version = "2.2.3"
 description = "File identification library for Python"
 category = "dev"
 optional = false
@@ -295,7 +295,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "importlib-metadata"
-version = "3.10.0"
+version = "3.10.1"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
@@ -309,6 +309,14 @@ zipp = ">=0.5"
 docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
 testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
 
+[[package]]
+name = "iniconfig"
+version = "1.1.1"
+description = "iniconfig: brain-dead simple config-ini parsing"
+category = "dev"
+optional = false
+python-versions = "*"
+
 [[package]]
 name = "ipopo"
 version = "1.0.1"
@@ -330,7 +338,7 @@ zeroconf = ["zeroconf (==0.19)"]
 
 [[package]]
 name = "ipykernel"
-version = "5.5.0"
+version = "5.5.3"
 description = "IPython Kernel for Jupyter"
 category = "main"
 optional = false
@@ -460,17 +468,6 @@ MarkupSafe = ">=0.23"
 [package.extras]
 i18n = ["Babel (>=0.8)"]
 
-[[package]]
-name = "json5"
-version = "0.9.5"
-description = "A Python implementation of the JSON5 data format."
-category = "main"
-optional = false
-python-versions = "*"
-
-[package.extras]
-dev = ["hypothesis"]
-
 [[package]]
 name = "jsonrpclib-pelix"
 version = "0.4.2"
@@ -499,14 +496,15 @@ format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator
 
 [[package]]
 name = "jupyter-client"
-version = "6.1.12"
+version = "6.2.0"
 description = "Jupyter protocol implementation and client libraries"
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6.1"
 
 [package.dependencies]
 jupyter-core = ">=4.6.0"
+nest-asyncio = ">=1.5"
 python-dateutil = ">=2.1"
 pyzmq = ">=13"
 tornado = ">=4.1"
@@ -514,7 +512,7 @@ traitlets = "*"
 
 [package.extras]
 doc = ["sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
-test = ["async-generator", "ipykernel", "ipython", "mock", "pytest-asyncio", "pytest-timeout", "pytest", "jedi (<0.18)"]
+test = ["async-generator", "ipykernel", "ipython", "mock", "pytest-asyncio", "pytest-timeout", "pytest", "mypy", "pre-commit", "jedi (<0.18)"]
 
 [[package]]
 name = "jupyter-core"
@@ -528,24 +526,6 @@ python-versions = ">=3.6"
 pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\""}
 traitlets = "*"
 
-[[package]]
-name = "jupyterlab"
-version = "2.3.1"
-description = "The JupyterLab notebook server extension."
-category = "main"
-optional = false
-python-versions = ">=3.5"
-
-[package.dependencies]
-jinja2 = ">=2.10"
-jupyterlab-server = ">=1.1.5,<2.0"
-notebook = ">=4.3.1"
-tornado = "<6.0.0 || >6.0.0,<6.0.1 || >6.0.1,<6.0.2 || >6.0.2"
-
-[package.extras]
-docs = ["jsx-lexer", "recommonmark", "sphinx", "sphinx-rtd-theme", "sphinx-copybutton"]
-test = ["pytest", "pytest-check-links", "requests", "wheel", "virtualenv"]
-
 [[package]]
 name = "jupyterlab-pygments"
 version = "0.1.2"
@@ -557,24 +537,6 @@ python-versions = "*"
 [package.dependencies]
 pygments = ">=2.4.1,<3"
 
-[[package]]
-name = "jupyterlab-server"
-version = "1.2.0"
-description = "JupyterLab Server"
-category = "main"
-optional = false
-python-versions = ">=3.5"
-
-[package.dependencies]
-jinja2 = ">=2.10"
-json5 = "*"
-jsonschema = ">=3.0.1"
-notebook = ">=4.2.0"
-requests = "*"
-
-[package.extras]
-test = ["pytest", "requests"]
-
 [[package]]
 name = "jupyterlab-widgets"
 version = "1.0.0"
@@ -634,7 +596,7 @@ python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 
 [[package]]
 name = "matplotlib"
-version = "3.4.0"
+version = "3.4.1"
 description = "Python plotting package"
 category = "main"
 optional = false
@@ -664,14 +626,6 @@ category = "main"
 optional = false
 python-versions = "*"
 
-[[package]]
-name = "more-itertools"
-version = "8.7.0"
-description = "More routines for operating on iterables, beyond itertools"
-category = "dev"
-optional = false
-python-versions = ">=3.5"
-
 [[package]]
 name = "nbclient"
 version = "0.5.3"
@@ -724,7 +678,7 @@ webpdf = ["pyppeteer (==0.2.2)"]
 
 [[package]]
 name = "nbformat"
-version = "5.1.2"
+version = "5.1.3"
 description = "The Jupyter Notebook format"
 category = "main"
 optional = false
@@ -766,14 +720,14 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "networkx"
-version = "2.5"
+version = "2.5.1"
 description = "Python package for creating and manipulating graphs and networks"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.dependencies]
-decorator = ">=4.3.0"
+decorator = ">=4.3,<5"
 
 [package.extras]
 all = ["numpy", "scipy", "pandas", "matplotlib", "pygraphviz", "pydot", "pyyaml", "lxml", "pytest"]
@@ -790,7 +744,7 @@ scipy = ["scipy"]
 
 [[package]]
 name = "nodeenv"
-version = "1.5.0"
+version = "1.6.0"
 description = "Node.js virtual environment builder"
 category = "dev"
 optional = false
@@ -904,7 +858,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "parso"
-version = "0.8.1"
+version = "0.8.2"
 description = "A Python Parser"
 category = "main"
 optional = false
@@ -943,7 +897,7 @@ python-versions = "*"
 
 [[package]]
 name = "pillow"
-version = "8.1.2"
+version = "8.2.0"
 description = "Python Imaging Library (Fork)"
 category = "main"
 optional = false
@@ -977,7 +931,7 @@ dev = ["pre-commit", "tox"]
 
 [[package]]
 name = "pre-commit"
-version = "2.11.1"
+version = "2.12.0"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 category = "dev"
 optional = false
@@ -994,11 +948,11 @@ virtualenv = ">=20.0.8"
 
 [[package]]
 name = "prometheus-client"
-version = "0.9.0"
+version = "0.10.1"
 description = "Python client for the Prometheus monitoring system."
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [package.extras]
 twisted = ["twisted"]
@@ -1122,25 +1076,24 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "pytest"
-version = "5.4.3"
+version = "6.2.3"
 description = "pytest: simple powerful testing with Python"
 category = "dev"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6"
 
 [package.dependencies]
 atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
-attrs = ">=17.4.0"
+attrs = ">=19.2.0"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
 importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
-more-itertools = ">=4.0.0"
+iniconfig = "*"
 packaging = "*"
-pluggy = ">=0.12,<1.0"
-py = ">=1.5.0"
-wcwidth = "*"
+pluggy = ">=0.12,<1.0.0a1"
+py = ">=1.8.2"
+toml = "*"
 
 [package.extras]
-checkqa-mypy = ["mypy (==v0.761)"]
 testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
 
 [[package]]
@@ -1215,7 +1168,7 @@ py = {version = "*", markers = "implementation_name == \"pypy\""}
 
 [[package]]
 name = "regex"
-version = "2021.3.17"
+version = "2021.4.4"
 description = "Alternative regular expression module, to replace re."
 category = "dev"
 optional = false
@@ -1252,11 +1205,11 @@ six = ">=1.7.0"
 
 [[package]]
 name = "ruamel.yaml"
-version = "0.16.13"
+version = "0.17.4"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3"
 
 [package.dependencies]
 "ruamel.yaml.clib" = {version = ">=0.1.2", markers = "platform_python_implementation == \"CPython\" and python_version < \"3.10\""}
@@ -1310,7 +1263,7 @@ python-versions = "*"
 
 [[package]]
 name = "sphinx"
-version = "3.5.3"
+version = "3.5.4"
 description = "Python documentation generator"
 category = "dev"
 optional = false
@@ -1320,7 +1273,7 @@ python-versions = ">=3.5"
 alabaster = ">=0.7,<0.8"
 babel = ">=1.3"
 colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""}
-docutils = ">=0.12"
+docutils = ">=0.12,<0.17"
 imagesize = "*"
 Jinja2 = ">=2.3"
 packaging = "*"
@@ -1341,13 +1294,14 @@ test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"]
 
 [[package]]
 name = "sphinx-rtd-theme"
-version = "0.5.1"
+version = "0.5.2"
 description = "Read the Docs theme for Sphinx"
 category = "dev"
 optional = false
 python-versions = "*"
 
 [package.dependencies]
+docutils = "<0.17"
 sphinx = "*"
 
 [package.extras]
@@ -1498,11 +1452,11 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 
 [[package]]
 name = "tomlkit"
-version = "0.5.11"
+version = "0.7.0"
 description = "Style preserving TOML library"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "tornado"
@@ -1528,7 +1482,7 @@ test = ["pytest"]
 
 [[package]]
 name = "typed-ast"
-version = "1.4.2"
+version = "1.4.3"
 description = "a fork of Python 2 and 3 ast modules with type comment support"
 category = "dev"
 optional = false
@@ -1649,7 +1603,7 @@ testing = ["pytest (>=4.6)", "pytest-checkdocs (>=1.2.3)", "pytest-flake8", "pyt
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.7"
-content-hash = "5267abba3126bd4768f2ec1220316dcbd40b7df784909ee0168246a350ebc3e4"
+content-hash = "be4675cba2c40c1a1a59c319a236ee9952176c5dae64f163b4b3881f614b5bda"
 
 [metadata.files]
 alabaster = [
@@ -1683,8 +1637,8 @@ argon2-cffi = [
     {file = "argon2_cffi-20.1.0-cp38-cp38-win_amd64.whl", hash = "sha256:9dfd5197852530294ecb5795c97a823839258dfd5eb9420233c7cfedec2058f2"},
 ]
 astroid = [
-    {file = "astroid-2.5.2-py3-none-any.whl", hash = "sha256:cd80bf957c49765dce6d92c43163ff9d2abc43132ce64d4b1b47717c6d2522df"},
-    {file = "astroid-2.5.2.tar.gz", hash = "sha256:6b0ed1af831570e500e2437625979eaa3b36011f66ddfc4ce930128610258ca9"},
+    {file = "astroid-2.5.3-py3-none-any.whl", hash = "sha256:bea3f32799fbb8581f58431c12591bc20ce11cbc90ad82e2ea5717d94f2080d5"},
+    {file = "astroid-2.5.3.tar.gz", hash = "sha256:ad63b8552c70939568966811a088ef0bc880f99a24a00834abd0e3681b514f91"},
 ]
 async-generator = [
     {file = "async_generator-1.10-py3-none-any.whl", hash = "sha256:01c7bf666359b4967d2cda0000cc2e4af16a0ae098cbffcb8472fb9e8ad6585b"},
@@ -1860,8 +1814,8 @@ filelock = [
     {file = "filelock-3.0.12.tar.gz", hash = "sha256:18d82244ee114f543149c66a6e0c14e9c4f8a1044b5cdaadd0f82159d6a6ff59"},
 ]
 identify = [
-    {file = "identify-2.2.2-py2.py3-none-any.whl", hash = "sha256:c7c0f590526008911ccc5ceee6ed7b085cbc92f7b6591d0ee5913a130ad64034"},
-    {file = "identify-2.2.2.tar.gz", hash = "sha256:43cb1965e84cdd247e875dec6d13332ef5be355ddc16776396d98089b9053d87"},
+    {file = "identify-2.2.3-py2.py3-none-any.whl", hash = "sha256:398cb92a7599da0b433c65301a1b62b9b1f4bb8248719b84736af6c0b22289d6"},
+    {file = "identify-2.2.3.tar.gz", hash = "sha256:4537474817e0bbb8cea3e5b7504b7de6d44e3f169a90846cbc6adb0fc8294502"},
 ]
 idna = [
     {file = "idna-2.10-py2.py3-none-any.whl", hash = "sha256:b97d804b1e9b523befed77c48dacec60e6dcb0b5391d57af6a65a312a90648c0"},
@@ -1872,16 +1826,20 @@ imagesize = [
     {file = "imagesize-1.2.0.tar.gz", hash = "sha256:b1f6b5a4eab1f73479a50fb79fcf729514a900c341d8503d62a62dbc4127a2b1"},
 ]
 importlib-metadata = [
-    {file = "importlib_metadata-3.10.0-py3-none-any.whl", hash = "sha256:d2d46ef77ffc85cbf7dac7e81dd663fde71c45326131bea8033b9bad42268ebe"},
-    {file = "importlib_metadata-3.10.0.tar.gz", hash = "sha256:c9db46394197244adf2f0b08ec5bc3cf16757e9590b02af1fca085c16c0d600a"},
+    {file = "importlib_metadata-3.10.1-py3-none-any.whl", hash = "sha256:2ec0faae539743ae6aaa84b49a169670a465f7f5d64e6add98388cc29fd1f2f6"},
+    {file = "importlib_metadata-3.10.1.tar.gz", hash = "sha256:c9356b657de65c53744046fa8f7358afe0714a1af7d570c00c3835c2d724a7c1"},
+]
+iniconfig = [
+    {file = "iniconfig-1.1.1-py2.py3-none-any.whl", hash = "sha256:011e24c64b7f47f6ebd835bb12a743f2fbe9a26d4cecaa7f53bc4f35ee9da8b3"},
+    {file = "iniconfig-1.1.1.tar.gz", hash = "sha256:bc3af051d7d14b2ee5ef9969666def0cd1a000e121eaea580d4a313df4b37f32"},
 ]
 ipopo = [
     {file = "iPOPO-1.0.1-py2.py3-none-any.whl", hash = "sha256:11776bf590a27ae1184cf4e639c9eab30ed28a34964957015d60606240c0729a"},
     {file = "iPOPO-1.0.1.tar.gz", hash = "sha256:79882efe394658cce6e104c84bf77a3ff2c6a970ad1810481401f4bcdee7eeb4"},
 ]
 ipykernel = [
-    {file = "ipykernel-5.5.0-py3-none-any.whl", hash = "sha256:efd07253b54d84d26e0878d268c8c3a41582a18750da633c2febfd2ece0d467d"},
-    {file = "ipykernel-5.5.0.tar.gz", hash = "sha256:98321abefdf0505fb3dc7601f60fc4087364d394bd8fad53107eb1adee9ff475"},
+    {file = "ipykernel-5.5.3-py3-none-any.whl", hash = "sha256:21abd584543759e49010975a4621603b3cf871b1039cb3879a14094717692614"},
+    {file = "ipykernel-5.5.3.tar.gz", hash = "sha256:a682e4f7affd86d9ce9b699d21bcab6d5ec9fbb2bfcb194f2706973b252bc509"},
 ]
 ipysheet = [
     {file = "ipysheet-0.4.4-py2.py3-none-any.whl", hash = "sha256:7666e89504df57fc34fd9860b1928bb53269204fe41a73602b167b7964c64e48"},
@@ -1911,10 +1869,6 @@ jinja2 = [
     {file = "Jinja2-2.11.3-py2.py3-none-any.whl", hash = "sha256:03e47ad063331dd6a3f04a43eddca8a966a26ba0c5b7207a9a9e4e08f1b29419"},
     {file = "Jinja2-2.11.3.tar.gz", hash = "sha256:a6d58433de0ae800347cab1fa3043cebbabe8baa9d29e668f1c768cb87a333c6"},
 ]
-json5 = [
-    {file = "json5-0.9.5-py2.py3-none-any.whl", hash = "sha256:af1a1b9a2850c7f62c23fde18be4749b3599fd302f494eebf957e2ada6b9e42c"},
-    {file = "json5-0.9.5.tar.gz", hash = "sha256:703cfee540790576b56a92e1c6aaa6c4b0d98971dc358ead83812aa4d06bdb96"},
-]
 jsonrpclib-pelix = [
     {file = "jsonrpclib-pelix-0.4.2.tar.gz", hash = "sha256:340915c17ebef7451948341542bf4789fc8d8c9fe604e86f00b722b6074a89f0"},
     {file = "jsonrpclib_pelix-0.4.2-py2.py3-none-any.whl", hash = "sha256:1f81e19a53357f7f410696307f9e171a15b51ef574d7d8bc330623c0f3e62220"},
@@ -1924,25 +1878,17 @@ jsonschema = [
     {file = "jsonschema-3.2.0.tar.gz", hash = "sha256:c8a85b28d377cc7737e46e2d9f2b4f44ee3c0e1deac6bf46ddefc7187d30797a"},
 ]
 jupyter-client = [
-    {file = "jupyter_client-6.1.12-py3-none-any.whl", hash = "sha256:e053a2c44b6fa597feebe2b3ecb5eea3e03d1d91cc94351a52931ee1426aecfc"},
-    {file = "jupyter_client-6.1.12.tar.gz", hash = "sha256:c4bca1d0846186ca8be97f4d2fa6d2bae889cce4892a167ffa1ba6bd1f73e782"},
+    {file = "jupyter_client-6.2.0-py3-none-any.whl", hash = "sha256:9715152067e3f7ea3b56f341c9a0f9715c8c7cc316ee0eb13c3c84f5ca0065f5"},
+    {file = "jupyter_client-6.2.0.tar.gz", hash = "sha256:e2ab61d79fbf8b56734a4c2499f19830fbd7f6fefb3e87868ef0545cb3c17eb9"},
 ]
 jupyter-core = [
     {file = "jupyter_core-4.7.1-py3-none-any.whl", hash = "sha256:8c6c0cac5c1b563622ad49321d5ec47017bd18b94facb381c6973a0486395f8e"},
     {file = "jupyter_core-4.7.1.tar.gz", hash = "sha256:79025cb3225efcd36847d0840f3fc672c0abd7afd0de83ba8a1d3837619122b4"},
 ]
-jupyterlab = [
-    {file = "jupyterlab-2.3.1-py3-none-any.whl", hash = "sha256:43e2ab93aeb416700d2b84fe128692bc40c8ce4e87bef44969ee13f91c8e56e3"},
-    {file = "jupyterlab-2.3.1.tar.gz", hash = "sha256:195b510e1ba119cc41229dca5c4abc95b1e26ee833bb302027ff5755c5050114"},
-]
 jupyterlab-pygments = [
     {file = "jupyterlab_pygments-0.1.2-py2.py3-none-any.whl", hash = "sha256:abfb880fd1561987efaefcb2d2ac75145d2a5d0139b1876d5be806e32f630008"},
     {file = "jupyterlab_pygments-0.1.2.tar.gz", hash = "sha256:cfcda0873626150932f438eccf0f8bf22bfa92345b814890ab360d666b254146"},
 ]
-jupyterlab-server = [
-    {file = "jupyterlab_server-1.2.0-py3-none-any.whl", hash = "sha256:55d256077bf13e5bc9e8fbd5aac51bef82f6315111cec6b712b9a5ededbba924"},
-    {file = "jupyterlab_server-1.2.0.tar.gz", hash = "sha256:5431d9dde96659364b7cc877693d5d21e7b80cea7ae3959ecc2b87518e5f5d8c"},
-]
 jupyterlab-widgets = [
     {file = "jupyterlab_widgets-1.0.0-py3-none-any.whl", hash = "sha256:caeaf3e6103180e654e7d8d2b81b7d645e59e432487c1d35a41d6d3ee56b3fef"},
     {file = "jupyterlab_widgets-1.0.0.tar.gz", hash = "sha256:5c1a29a84d3069208cb506b10609175b249b6486d6b1cbae8fcde2a11584fb78"},
@@ -2083,25 +2029,25 @@ markupsafe = [
     {file = "MarkupSafe-1.1.1.tar.gz", hash = "sha256:29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b"},
 ]
 matplotlib = [
-    {file = "matplotlib-3.4.0-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:fe4676d7f25d2915562aa551996843e97e7d25aefc54617a3b0fe74a967bc2c8"},
-    {file = "matplotlib-3.4.0-cp37-cp37m-manylinux1_i686.whl", hash = "sha256:e879b5915f0c8e765d0e1ae4ecf93fafbde4a1dee88409427ac0ca55d31a41a9"},
-    {file = "matplotlib-3.4.0-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:8b046715f710b58dc89241eb3c8e907a30b269e915df6a134bb419f05a6507bf"},
-    {file = "matplotlib-3.4.0-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:7e76956b8dd4bd8a6be71e401e4a24d975e57d5849a80c24a35551040ff82df0"},
-    {file = "matplotlib-3.4.0-cp37-cp37m-win32.whl", hash = "sha256:3847ce29a01e1d1f0aa691263e510ce8504a20d158a811ed3a45c4c1d9e708e7"},
-    {file = "matplotlib-3.4.0-cp37-cp37m-win_amd64.whl", hash = "sha256:3c617fc6f7d6ac0c6142e34f3066520273195c75fb5371eabfddb3da04a75174"},
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+    {file = "tomlkit-0.7.0-py2.py3-none-any.whl", hash = "sha256:6babbd33b17d5c9691896b0e68159215a9387ebfa938aa3ac42f4a4beeb2b831"},
+    {file = "tomlkit-0.7.0.tar.gz", hash = "sha256:ac57f29693fab3e309ea789252fcce3061e19110085aa31af5446ca749325618"},
 ]
 tornado = [
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@@ -2653,36 +2578,36 @@ traitlets = [
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 ]
 typed-ast = [
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-    {file = "typed_ast-1.4.2-cp39-cp39-manylinux1_x86_64.whl", hash = "sha256:d746a437cdbca200622385305aedd9aef68e8a645e385cc483bdc5e488f07166"},
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+    {file = "typed_ast-1.4.3-cp35-cp35m-manylinux1_i686.whl", hash = "sha256:2068531575a125b87a41802130fa7e29f26c09a2833fea68d9a40cf33902eba6"},
+    {file = "typed_ast-1.4.3-cp35-cp35m-manylinux1_x86_64.whl", hash = "sha256:c907f561b1e83e93fad565bac5ba9c22d96a54e7ea0267c708bffe863cbe4075"},
+    {file = "typed_ast-1.4.3-cp35-cp35m-manylinux2014_aarch64.whl", hash = "sha256:1b3ead4a96c9101bef08f9f7d1217c096f31667617b58de957f690c92378b528"},
+    {file = "typed_ast-1.4.3-cp35-cp35m-win32.whl", hash = "sha256:dde816ca9dac1d9c01dd504ea5967821606f02e510438120091b84e852367428"},
+    {file = "typed_ast-1.4.3-cp35-cp35m-win_amd64.whl", hash = "sha256:777a26c84bea6cd934422ac2e3b78863a37017618b6e5c08f92ef69853e765d3"},
+    {file = "typed_ast-1.4.3-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:f8afcf15cc511ada719a88e013cec87c11aff7b91f019295eb4530f96fe5ef2f"},
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+    {file = "typed_ast-1.4.3-cp39-cp39-win_amd64.whl", hash = "sha256:9c6d1a54552b5330bc657b7ef0eae25d00ba7ffe85d9ea8ae6540d2197a3788c"},
+    {file = "typed_ast-1.4.3.tar.gz", hash = "sha256:fb1bbeac803adea29cedd70781399c99138358c26d05fcbd23c13016b7f5ec65"},
 ]
 typing-extensions = [
     {file = "typing_extensions-3.7.4.3-py2-none-any.whl", hash = "sha256:dafc7639cde7f1b6e1acc0f457842a83e722ccca8eef5270af2d74792619a89f"},
diff --git a/pyproject.toml b/pyproject.toml
index 0b56162c9..2e17a9151 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -48,22 +48,21 @@ scipy = "^1.3.2"
 pandas = "^1.1.0"
 openmdao = "^3.4"
 ipopo = "^1.0.0"
-jupyterlab = "^2.0.0"
 ipywidgets = "^7.3.0"
 ipysheet = "^0.4.0"
 matplotlib = "^3.1.2"
 plotly = "^4.5.0"
 wop = "^1.12.0"
 lxml = "^4.6.3"
-tomlkit = "^0.5.3"
-"ruamel.yaml" = "^0.16.13"
+tomlkit = ">=0.5.3 <1"
+"ruamel.yaml" = ">=0.15.78 <0.18"
 jsonschema = "^3.2.0"
 strictyaml = "^1.1.0"
 ensure = "^1.0.0"
 tabulate = "^0.8.9"
 
 [tool.poetry.dev-dependencies]
-pytest = "^5.2"
+pytest = ">=5.2"
 pytest-cov = "*"
 pre-commit = "*"
 black = { version = "19.10b0", allow-prereleases = true } # if version is changed, please change it also in .pre-commit-config.yaml file.


Test patch:
diff --git a/.github/workflows/watchman_tests.yml b/.github/workflows/watchman_tests.yml
index 3853c79a9..a79921de6 100644
--- a/.github/workflows/watchman_tests.yml
+++ b/.github/workflows/watchman_tests.yml
@@ -23,27 +23,16 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
-      - name: Install Poetry
-        run: curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python
-        shell: bash
-
-      - name: Poetry path
-        run: echo "$HOME/.poetry/bin" >> $GITHUB_PATH
-        shell: bash
-
-      - name: Update production dependencies
-        run: poetry update --no-dev
-        shell: bash
-
-      - name: Install dependencies
-        run: poetry install
+      - name: Install # installing pytest-cov is needed because of pytest.ini
+        run: |
+          pip install .
+          pip install pytest pytest-cov nbval
         shell: bash
 
       - name: Unit tests
-        run: |
-          poetry run pytest src
+        run: pytest --no-cov src
         shell: bash
 
       - name: Notebook tests
-        run: poetry run pytest --no-cov --nbval-lax -p no:python src
+        run: pytest --no-cov --nbval-lax -p no:python src
         shell: bash