Repository: KrishnaswamyLab/PHATE (language: python)

Issue:
python 3.10
Hi,

Is anyone facing an incompatibility issue when installing phate using python3.10?

Best


Discussion / hints:

Fix patch:
diff --git a/Python/phate/version.py b/Python/phate/version.py
index e13bd59..39e0411 100644
--- a/Python/phate/version.py
+++ b/Python/phate/version.py
@@ -1,1 +1,1 @@
-__version__ = "1.0.8"
+__version__ = "1.0.9"
diff --git a/Python/setup.py b/Python/setup.py
index 09e086f..4839c6f 100644
--- a/Python/setup.py
+++ b/Python/setup.py
@@ -11,7 +11,7 @@
     "graphtools>=1.3.1",
     "scprep>=0.11.1",
     "Deprecated",
-    "s_gd2>=1.5",
+    "s_gd2>=1.8.1",
 ]
 
 test_requires = ["nose2", "anndata", "coverage", "coveralls", "nose"]


Test patch:
diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_tests.yml
index e9ade57..74a8829 100644
--- a/.github/workflows/run_tests.yml
+++ b/.github/workflows/run_tests.yml
@@ -55,9 +55,12 @@ jobs:
       fail-fast: false
       matrix:
         config:
-        - {name: 'current', os: ubuntu-latest, python: '3.8' }
-        - {name: 'prev', os: ubuntu-latest, python: '3.7' }
-        - {name: 'old', os: ubuntu-latest, python: '3.6' }
+        - {name: '3.11', os: ubuntu-latest, python: '3.11' }
+        - {name: '3.10', os: ubuntu-latest, python: '3.10' }
+        - {name: '3.9', os: ubuntu-latest, python: '3.9' }
+        - {name: '3.8', os: ubuntu-latest, python: '3.8' }
+        - {name: '3.7', os: ubuntu-latest, python: '3.7' }
+        - {name: '3.6', os: ubuntu-latest, python: '3.6' }
 
     steps:
     - name: Cancel Previous Runs