Repository: Cosmoglobe/zodipy (language: python)

Issue:
poetry install downgrades numpy and fails
**Describe the bug**

Trying to install using `poetry install` as documented but it fails with:

```
- Downgrading numpy (1.26.4 -> 1.24.4): Failed
```

**Expected behavior**

Just use installed numpy if compatible. Any reason why this is incompatible with numpy 1.26? There is no mention of such incompatibility in README.

**Desktop (please complete the following information):**
 - OS: Ubuntu (WSL2 on Windows 11)
 - Browser [e.g. chrome, safari] N/A
 - Version [e.g. 22] N/A

**Additional context**

This is part of:

* https://github.com/pyOpenSci/software-submission/issues/161


Discussion / hints:

Fix patch:
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 832fd84..14e02c9 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -8,7 +8,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.1.4
+    rev: v0.3.7
     hooks:
       - id: ruff
       - id: ruff-format
diff --git a/README.md b/README.md
index ab15063..2f61765 100644
--- a/README.md
+++ b/README.md
@@ -2,12 +2,12 @@
 <img src="docs/img/zodipy_logo.png" width="350">
 
 [![astropy](http://img.shields.io/badge/powered%20by-AstroPy-orange.svg?style=flat-square)](http://www.astropy.org/)
+![PyPI - Python Version](https://img.shields.io/pypi/pyversions/zodipy?style=flat-square)
 [![PyPI](https://img.shields.io/pypi/v/zodipy.svg?logo=python&style=flat-square)](https://pypi.org/project/zodipy)
-[![Actions Status](https://img.shields.io/github/actions/workflow/status/Cosmoglobe/Zodipy/tests.yml?branch=main&logo=github&style=flat-square)](https://github.com/Cosmoglobe/Zodipy/actions)
-[![Codecov](https://img.shields.io/codecov/c/github/Cosmoglobe/zodipy?token=VZP9L79EUJ&style=flat-square&logo=codecov)](https://app.codecov.io/gh/Cosmoglobe/zodipy)
 [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://img.shields.io/badge/repo_status-Active-success?style=flat-square)](https://www.repostatus.org/#active)
+[![Actions Status](https://img.shields.io/github/actions/workflow/status/Cosmoglobe/Zodipy/tests.yml?branch=main&logo=github&style=flat-square)](https://github.com/Cosmoglobe/Zodipy/actions)
 ![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/Cosmoglobe/zodipy/mkdocs-deploy.yml?branch=main&style=flat-square&logo=github&label=docs)
-![PyPI - Python Version](https://img.shields.io/pypi/pyversions/zodipy?style=flat-square)
+[![Codecov](https://img.shields.io/codecov/c/github/Cosmoglobe/zodipy?token=VZP9L79EUJ&style=flat-square&logo=codecov)](https://app.codecov.io/gh/Cosmoglobe/zodipy)
 [![arXiv Paper](https://img.shields.io/badge/arXiv-2205.12962-green?style=flat-square&logo=arxiv)](https://arxiv.org/abs/2205.12962)
 [![ascl:2306.012](https://img.shields.io/badge/ascl-2306.012-blue.svg?colorB=262255&style=flat-square)](https://ascl.net/2306.012)
 ---
@@ -24,7 +24,7 @@ See the [documentation](https://cosmoglobe.github.io/zodipy/) for more informati
 ZodiPy is installed using `pip install zodipy`.
 
 # Dependencies
-ZodiPy supports all Python versions >= 3.8, and has the following dependencies:
+ZodiPy supports all Python versions >= 3.9, and has the following dependencies:
 - [Astropy](https://www.astropy.org/) (>=5.0.1)
 - [NumPy](https://numpy.org/)
 - [healpy](https://healpy.readthedocs.io/en/latest/)
@@ -62,7 +62,7 @@ See [CITATION](https://github.com/Cosmoglobe/zodipy/blob/dev/CITATION.bib) if yo
 
 
 # For developers
-Contributing developers will need to download the following additional dependencies:
+Contributing developers will need to download the following additional dependencies to test, lint, format and build documentation locally:
 - pytest
 - pytest-cov
 - hypothesis
@@ -96,17 +96,17 @@ from the repositry root. This will read and download all the dependencies from t
 
 Note that developers using Python 3.12 will need to upgrade their pip versions with `python3 -m pip install --upgrade pip` before being able to install ZodiPy. This is due to known incompatibilities between older pip versions and Python 3.12
 
-## Tests and formatting
+## Tests, linting and formatting
 The following tools should be run from the root of the repository with no errors. (These are ran automatically as part of the CI workflows on GitHub, but should be tested locally first)
 
 - [pytest](https://docs.pytest.org/en/8.0.x/): Tests are run with pytest by simply running `pytest` in the command line in the root of the repository. 
-- [ruff](https://github.com/astral-sh/ruff): Formating and linting is done with `ruff` by simply running `ruff zodipy/` in the command line in the root of the repository. 
+- [ruff](https://github.com/astral-sh/ruff): Formating and linting is done with `ruff` by simply running `ruff check zodipy/` and `ruff format zodipy/` in the command line in the root of the repository. 
 - [mypy](https://mypy-lang.org/): Type checking is done with `mypy` by simply running `mypy zodipy/` in the root of the repository.
 
 Remeber to add tests when implementing new features to maintain a high code coverage.
 
 ## Documentation
-We use [MkDocs](https://www.mkdocs.org/) to create our documentation. The documentation is automatically built and uploaded as part of the github CI. New features should be documented by adding content to the `docs/` folder where necessary.
+We use [MkDocs](https://www.mkdocs.org/) to create our documentation. The documentation is built locally with `mkdocs build` from the repository root, and served with `mkdocs serve`.
 
 
 # Funding
diff --git a/docs/index.md b/docs/index.md
index 8cacc43..9044898 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -2,8 +2,11 @@
 <img src="img/zodipy_logo.png" alt="ZodiPy logo" width="50%">
 
 [![astropy](http://img.shields.io/badge/powered%20by-AstroPy-orange.svg?style=flat-square)](http://www.astropy.org/)
+![PyPI - Python Version](https://img.shields.io/pypi/pyversions/zodipy?style=flat-square)
 [![PyPI](https://img.shields.io/pypi/v/zodipy.svg?logo=python&style=flat-square)](https://pypi.org/project/zodipy)
+[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://img.shields.io/badge/repo_status-Active-success?style=flat-square)](https://www.repostatus.org/#active)
 [![Actions Status](https://img.shields.io/github/actions/workflow/status/Cosmoglobe/Zodipy/tests.yml?branch=main&logo=github&style=flat-square)](https://github.com/Cosmoglobe/Zodipy/actions)
+![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/Cosmoglobe/zodipy/mkdocs-deploy.yml?branch=main&style=flat-square&logo=github&label=docs)
 [![Codecov](https://img.shields.io/codecov/c/github/Cosmoglobe/zodipy?token=VZP9L79EUJ&style=flat-square&logo=codecov)](https://app.codecov.io/gh/Cosmoglobe/zodipy)
 [![arXiv Paper](https://img.shields.io/badge/arXiv-2205.12962-green?style=flat-square&logo=arxiv)](https://arxiv.org/abs/2205.12962)
 [![ascl:2306.012](https://img.shields.io/badge/ascl-2306.012-blue.svg?colorB=262255&style=flat-square)](https://ascl.net/2306.012)
diff --git a/docs/install.md b/docs/install.md
index 32653af..179e612 100644
--- a/docs/install.md
+++ b/docs/install.md
@@ -7,7 +7,7 @@ pip install zodipy
 ```
 
 !!! note
-    ZodiPy supports python versions >=3.8.
+    ZodiPy supports python versions >=3.9.
 
 ## Dependencies
 ZodiPy has the following dependencies (these are automatically downloaded alongside ZodiPy):
diff --git a/poetry.lock b/poetry.lock
index 8c090fa..cc32659 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2,71 +2,70 @@
 
 [[package]]
 name = "astropy"
-version = "5.2.2"
+version = "6.0.1"
 description = "Astronomy and astrophysics core library"
 optional = false
-python-versions = ">=3.8"
-files = [
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-    {file = "astropy-5.2.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:0ccf6f16cf7e520247ecc9d1a66dd4c3927fd60622203bdd1d06655ad81fa18f"},
-    {file = "astropy-5.2.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:3d0c37da922cdcb81e74437118fabd64171cbfefa06c7ea697a270e82a8164f2"},
-    {file = "astropy-5.2.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:04464e664a22382626ce9750ebe943b80a718dc8347134b9d138b63a2029f67a"},
-    {file = "astropy-5.2.2-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:4f60cea0fa7cb6ebbd90373e48c07f5d459e95dfd6363f50e316e2db7755bead"},
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-    {file = "astropy-5.2.2-cp310-cp310-win_amd64.whl", hash = "sha256:185ade8c33cea34ba791b282e937686d98b4e205d4f343e686a4666efab2f6e7"},
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+python-versions = ">=3.9"
+files = [
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 ]
 
 [package.dependencies]
-numpy = ">=1.20"
+astropy-iers-data = ">=0.2024.2.26.0.28.55"
+numpy = ">=1.22,<2"
 packaging = ">=19.0"
-pyerfa = ">=2.0"
+pyerfa = ">=2.0.1.1"
 PyYAML = ">=3.13"
 
 [package.extras]
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 [package.dependencies]
 astropy = "*"
 matplotlib = "*"
-numpy = ">=1.13"
+numpy = ">=1.19"
 scipy = "*"
 
 [package.extras]
@@ -666,13 +594,13 @@ license = ["ukkonen"]
 
 [[package]]
 name = "idna"
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 description = "Internationalized Domain Names in Applications (IDNA)"
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 ]
 
 [package.dependencies]
@@ -1027,10 +936,10 @@ contourpy = ">=1.0.1"
 cycler = ">=0.10"
 fonttools = ">=4.22.0"
 importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""}
-kiwisolver = ">=1.0.1"
-numpy = ">=1.20,<2"
+kiwisolver = ">=1.3.1"
+numpy = ">=1.21"
 packaging = ">=20.0"
-pillow = ">=6.2.0"
+pillow = ">=8"
 pyparsing = ">=2.3.1"
 python-dateutil = ">=2.7"
 
@@ -1241,39 +1150,47 @@ setuptools = "*"
 
 [[package]]
 name = "numpy"
-version = "1.24.4"
+version = "1.26.4"
 description = "Fundamental package for array computing in Python"
 optional = false
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+    {file = "scipy-1.13.0-cp311-cp311-win_amd64.whl", hash = "sha256:a2f471de4d01200718b2b8927f7d76b5d9bde18047ea0fa8bd15c5ba3f26a1d6"},
+    {file = "scipy-1.13.0-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:d0de696f589681c2802f9090fff730c218f7c51ff49bf252b6a97ec4a5d19e8b"},
+    {file = "scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:b2a3ff461ec4756b7e8e42e1c681077349a038f0686132d623fa404c0bee2551"},
+    {file = "scipy-1.13.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:6bf9fe63e7a4bf01d3645b13ff2aa6dea023d38993f42aaac81a18b1bda7a82a"},
+    {file = "scipy-1.13.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:1e7626dfd91cdea5714f343ce1176b6c4745155d234f1033584154f60ef1ff42"},
+    {file = "scipy-1.13.0-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:109d391d720fcebf2fbe008621952b08e52907cf4c8c7efc7376822151820820"},
+    {file = "scipy-1.13.0-cp312-cp312-win_amd64.whl", hash = "sha256:8930ae3ea371d6b91c203b1032b9600d69c568e537b7988a3073dfe4d4774f21"},
+    {file = "scipy-1.13.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:5407708195cb38d70fd2d6bb04b1b9dd5c92297d86e9f9daae1576bd9e06f602"},
+    {file = "scipy-1.13.0-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:ac38c4c92951ac0f729c4c48c9e13eb3675d9986cc0c83943784d7390d540c78"},
+    {file = "scipy-1.13.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:09c74543c4fbeb67af6ce457f6a6a28e5d3739a87f62412e4a16e46f164f0ae5"},
+    {file = "scipy-1.13.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:28e286bf9ac422d6beb559bc61312c348ca9b0f0dae0d7c5afde7f722d6ea13d"},
+    {file = "scipy-1.13.0-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:33fde20efc380bd23a78a4d26d59fc8704e9b5fd9b08841693eb46716ba13d86"},
+    {file = "scipy-1.13.0-cp39-cp39-win_amd64.whl", hash = "sha256:45c08bec71d3546d606989ba6e7daa6f0992918171e2a6f7fbedfa7361c2de1e"},
+    {file = "scipy-1.13.0.tar.gz", hash = "sha256:58569af537ea29d3f78e5abd18398459f195546bb3be23d16677fb26616cc11e"},
 ]
 
 [package.dependencies]
-numpy = ">=1.18.5,<1.26.0"
+numpy = ">=1.22.4,<2.3"
 
 [package.extras]
-dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"]
-doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"]
-test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
+doc = ["jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.12.0)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0)", "sphinx-design (>=0.4.0)"]
+test = ["array-api-strict", "asv", "gmpy2", "hypothesis (>=6.30)", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
 
 [[package]]
 name = "setuptools"
@@ -1984,20 +1876,6 @@ files = [
 [package.extras]
 watchmedo = ["PyYAML (>=3.10)"]
 
-[[package]]
-name = "wheel"
-version = "0.43.0"
-description = "A built-package format for Python"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "wheel-0.43.0-py3-none-any.whl", hash = "sha256:55c570405f142630c6b9f72fe09d9b67cf1477fcf543ae5b8dcb1f5b7377da81"},
-    {file = "wheel-0.43.0.tar.gz", hash = "sha256:465ef92c69fa5c5da2d1cf8ac40559a8c940886afcef87dcf14b9470862f1d85"},
-]
-
-[package.extras]
-test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
-
 [[package]]
 name = "zipp"
 version = "3.18.1"
@@ -2015,5 +1893,5 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 
 [metadata]
 lock-version = "2.0"
-python-versions = ">=3.8"
-content-hash = "9a2c9ce54a955ef861e708abac33646d3b184d7d3d14821b617cae1915a72785"
+python-versions = ">=3.9"
+content-hash = "e8cbfe076ced3accc312f14cb6b0b4a45bc46cd36b87c1027074b45dce5f6ea7"
\ No newline at end of file
diff --git a/pyproject.toml b/pyproject.toml
index d867d4d..ccb5366 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,7 +1,7 @@
 [tool.poetry]
 name = "zodipy"
 homepage = "https://github.com/Cosmoglobe/zodipy"
-version = "0.8.6"
+version = "0.9.0"
 description = "Software for simulating zodiacal emission"
 authors = ["Metin San <metinisan@gmail.com>"]
 readme = "README.md"
@@ -25,12 +25,12 @@ keywords = [
 
 
 [tool.poetry.dependencies]
-python = ">=3.8"
-numpy = "^1.22.3"
-healpy = "^1.15.0"
+python = ">=3.9"
+numpy = "^1.26.4"
+healpy = "^1.16.6"
 astropy = ">=5.0.1"
 jplephem = "^2.17"
-scipy = "^1.9.3"
+scipy = "^1.13.0"
 
 [tool.poetry.group.dev.dependencies]
 pytest = "^7.2.1"
@@ -44,7 +44,7 @@ pytest-cov = "^4.0.0"
 mkdocs-material = "^9.0.1"
 mkdocstrings = "^0.23.0"
 mkdocstrings-python = "^1.7.3"
-ruff = "^0.1.4"
+ruff = "^0.3.7"
 markdown = "<3.4.0"
 hypothesis = "^6.99.11"
 
@@ -70,7 +70,7 @@ filterwarnings = [
 ]
 
 [tool.ruff]
-select = [
+lint.select = [
     "F", 
     "D", 
     "F", 
@@ -101,7 +101,7 @@ select = [
     "RUF",
 ]
 line-length = 100
-ignore = [
+lint.ignore = [
     "B905",
     "D100",
     "D104",
@@ -112,6 +112,4 @@ ignore = [
     "ISC001"
 ]
 exclude = ["tests/*", "docs/*"]
-
-[tool.ruff.pydocstyle]
-convention = "google"
\ No newline at end of file
+lint.pydocstyle.convention = "google"
\ No newline at end of file
diff --git a/zodipy/_ipd_dens_funcs.py b/zodipy/_ipd_dens_funcs.py
index 3e9ffc4..7109a99 100644
--- a/zodipy/_ipd_dens_funcs.py
+++ b/zodipy/_ipd_dens_funcs.py
@@ -411,8 +411,7 @@ def compute_feature_density_rmm(
 
 
 class ComponentDensityFn(Protocol):
-    def __call__(self, X_helio: npt.NDArray[np.float64]) -> npt.NDArray[np.float64]:
-        ...
+    def __call__(self, X_helio: npt.NDArray[np.float64]) -> npt.NDArray[np.float64]: ...
 
 
 def construct_density_partials(


Test patch:
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index f098991..b9d897c 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -9,7 +9,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest]
-        python-versions: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-versions: ['3.9', '3.10', '3.11', '3.12']
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}