Repository: fractal-analytics-platform/fractal-client (language: python)

Issue:
Add python 3.9 to github CI



Discussion / hints:

Fix patch:
diff --git a/fractal/client/cmd/__init__.py b/fractal/client/cmd/__init__.py
index 3de5e021f..b729faf57 100644
--- a/fractal/client/cmd/__init__.py
+++ b/fractal/client/cmd/__init__.py
@@ -15,9 +15,10 @@
 from ._project import project_create
 from ._project import project_list
 from ._project import project_show
+from ._task import task_collect_pip
+from ._task import task_collection_check
 from ._task import task_edit
 from ._task import task_list
-from ._task import task_new
 from ._workflow import workflow_add_task
 from ._workflow import workflow_delete
 from ._workflow import workflow_edit
@@ -25,9 +26,6 @@
 from ._workflow import workflow_remove_task
 from ._workflow import workflow_show
 
-# from ._task import task_add_subtask
-# from ._task import task_apply
-
 
 class NoCommandError(ValueError):
     pass
@@ -134,14 +132,12 @@ async def task(
 ) -> BaseInterface:
     if subcmd == "list":
         iface = await task_list(client, **kwargs)
-    elif subcmd == "new":
-        iface = await task_new(client, batch=batch, **kwargs)
+    elif subcmd == "collect":
+        iface = await task_collect_pip(client, batch=batch, **kwargs)
+    elif subcmd == "check-collection":
+        iface = await task_collection_check(client, **kwargs)
     elif subcmd == "edit":
         iface = await task_edit(client, **kwargs)
-    # elif subcmd == "add-subtask":
-    #     iface = await task_add_subtask(client, batch=batch, **kwargs)
-    # elif subcmd == "apply":
-    #     iface = await task_apply(client, **kwargs)
     return iface
 
 
diff --git a/fractal/client/cmd/_task.py b/fractal/client/cmd/_task.py
index 9fa21becf..ca43d554c 100644
--- a/fractal/client/cmd/_task.py
+++ b/fractal/client/cmd/_task.py
@@ -9,7 +9,7 @@
 from ..interface import PrintInterface
 from ..interface import RichJsonInterface
 from ..response import check_response
-from ..schemas import TaskCreate
+from ..schemas import TaskCollectPip
 from ..schemas import TaskRead
 from ..schemas import TaskUpdate
 
@@ -76,59 +76,43 @@ async def task_list(client: AuthClient, **kwargs) -> RichJsonInterface:
     return RichJsonInterface(retcode=0, data=task_list)
 
 
-async def task_new(
+async def task_collect_pip(
     client: AuthClient,
     *,
-    batch: bool = False,
-    name: str,
-    input_type: str,
-    output_type: str,
-    module: str,
-    source: str,
-    command: str,
-    default_args: Optional[str] = None,
-    subtask_list: Optional[str] = None,
+    package: str,
+    version: Optional[str] = None,
+    python_version: Optional[str],
+    package_extras: Optional[str] = None,
     **kwargs,
-) -> RichJsonInterface:
+) -> BaseInterface:
+    task_collect = TaskCollectPip(
+        package=package,
+        version=version,
+        python_version=python_version or "3.8",
+        package_extras=package_extras,
+    )
 
-    if not default_args:
-        default_args_dict = {}
-    else:
-        default_args_dict = json.loads(default_args)
-    if not subtask_list:
-        subtask_list_list = []
+    res = await client.post(
+        f"{settings.BASE_URL}/task/collect/pip/",
+        json=task_collect.dict(),
+    )
+    # TODO check response
+    if res.status_code == 201:
+        return RichJsonInterface(retcode=0, data=res.json())
     else:
-        subtask_list_list = json.loads(subtask_list)
-
-    # Check the task name is not made of numbers only. This prevents
-    # ambiguities for functions that take arguments like task_id_or_name, and
-    # then use casting to check wheter task_id_or_name is an ID or a name.
-    if name.isdecimal():
-        raise ValueError(
-            f"Invalid task name {name} (name cannot be made of "
-            "numbers only)"
-        )
+        raise RuntimeError(res.json())
 
-    task = TaskCreate(
-        name=name,
-        command=command,
-        source=source,
-        input_type=input_type,
-        output_type=output_type,
-        default_args=default_args_dict,
-        module=module,
-        subtask_list=subtask_list_list,
-    )
 
-    res = await client.post(
-        f"{settings.BASE_URL}/task/",
-        json=task.dict(),
+async def task_collection_check(
+    client: AuthClient, *, installation_path: Path, **kwargs
+) -> BaseInterface:
+    res = await client.get(
+        f"{settings.BASE_URL}/task/collect/{installation_path}"
     )
-    new_task = check_response(res, expected_status_code=201, coerce=TaskRead)
-    if batch:
-        return PrintInterface(retcode=0, data=new_task.id)
+    if res.status_code == 200:
+        return RichJsonInterface(retcode=0, data=res.json())
     else:
-        return RichJsonInterface(retcode=0, data=new_task.dict())
+        raise RuntimeError(res.json())
 
 
 async def task_edit(
diff --git a/fractal/client/parser.py b/fractal/client/parser.py
index 929345133..d3d9820bc 100644
--- a/fractal/client/parser.py
+++ b/fractal/client/parser.py
@@ -207,31 +207,38 @@
 # task list
 task_list_parser = task_subparsers.add_parser("list", help="List tasks")
 
-# task new
-task_new_parser = task_subparsers.add_parser("new", help="Create new task")
-task_new_parser.add_argument(
-    "name",
-    help="Task name (must be unique, and not only made of numbers only)",
-)
-task_new_parser.add_argument("input_type", help="Dataset input type")
-task_new_parser.add_argument("output_type", help="Dataset output type")
-task_new_parser.add_argument(
-    "command",
-    help="The command(s) that executes the task",
+# task collect
+task_collect_parser = task_subparsers.add_parser(
+    "collect",
+    help="Install and collect all tasks a pip installable package exposes",
 )
-task_new_parser.add_argument(
-    "source",
-    help="Path or url to task source.",
+task_collect_parser.add_argument(
+    "package",
+    help="Package name or path to local package",
 )
-task_new_parser.add_argument(
-    "module",
-    help="Module path, e.g., `module.submodule:task_function`",
+task_collect_parser.add_argument(
+    "--python-version",
+    help="Select the python version to use for this package",
 )
-task_new_parser.add_argument(
-    "--default_args", help="Default arguments, as a JSON-encoded string"
+task_collect_parser.add_argument(
+    "--package-extras",
+    help=(
+        "Comma separated list of extra components for the package to be "
+        "installed, e.g., `collect fractal-tasks-core "
+        "--package-extras=torch,tensorflow` will trigger the installation of "
+        "`fractal-tasks-core[torch,tensorflow]`"
+    ),
 )
-task_new_parser.add_argument("--subtask-list", help="Subtask list")
 
+# task check-collection
+task_check_collection_parser = task_subparsers.add_parser(
+    "check-collection",
+    help="Check status of background task collection processes",
+)
+task_check_collection_parser.add_argument(
+    "installation_path",
+    help="Check collection status of tasks installed at this path",
+)
 
 # task edit
 task_edit_parser = task_subparsers.add_parser(
diff --git a/fractal/common/schemas/project.py b/fractal/common/schemas/project.py
index 1d5588d18..218682728 100644
--- a/fractal/common/schemas/project.py
+++ b/fractal/common/schemas/project.py
@@ -7,6 +7,7 @@
 from pydantic import validator
 from sqlmodel import SQLModel
 
+
 __all__ = (
     "ProjectCreate",
     "ProjectRead",
@@ -37,7 +38,6 @@ def not_null(cls, value):
 
 class ProjectRead(_ProjectBase):
     id: int
-    slug: str
     dataset_list: List["DatasetRead"] = []
 
 
diff --git a/fractal/common/schemas/task.py b/fractal/common/schemas/task.py
index e6e842ac1..e38d0d26f 100644
--- a/fractal/common/schemas/task.py
+++ b/fractal/common/schemas/task.py
@@ -1,13 +1,24 @@
+from pathlib import Path
 from typing import Any
 from typing import Dict
+from typing import List
+from typing import Literal
 from typing import Optional
 
 from pydantic import BaseModel
+from pydantic import validator
 from sqlmodel import Field  # type: ignore
 from sqlmodel import SQLModel
 
 
-__all__ = ("TaskCreate", "TaskUpdate", "TaskRead", "TaskCollectPip")
+__all__ = (
+    "TaskCreate",
+    "TaskUpdate",
+    "TaskRead",
+    "TaskCollectPip",
+    "TaskCollectResult",
+    "TaskCollectStatus",
+)
 
 
 class _TaskBase(SQLModel):
@@ -53,6 +64,10 @@ class TaskUpdate(_TaskBase):
     default_args: Optional[Dict[str, Any]] = None  # type:ignore
 
 
+class TaskRead(_TaskBase):
+    id: int
+
+
 class TaskCreate(_TaskBase):
     pass
 
@@ -67,6 +82,43 @@ class TaskCollectPip(_TaskCollectBase):
     python_version: str = "3.8"
     package_extras: Optional[str]
 
+    @validator("package")
+    def package_path_absolute(cls, value):
+        if "/" in value:
+            package_path = Path(value)
+            if not package_path.is_absolute():
+                raise ValueError(
+                    f"Package path must be absolute: {package_path}"
+                )
+            if not package_path.exists():
+                raise ValueError(
+                    f"Package file does not exist: {package_path}"
+                )
+        return value
+
+
+class TaskCollectResult(_TaskCollectBase):
+    """
+    Temporary result of the collection process
+
+    This schema represents the partial result returned when collection is
+    initiated but it is continuing in the background.
+
+    Attributes:
+        package (str):
+            the package name
+        venv_path (Path):
+            the installation path relative to `FRACTAL_ROOT`
+        info (str):
+            arbitrary information
+    """
 
-class TaskRead(_TaskBase):
-    id: int
+    package: str
+    venv_path: Path
+    info: Optional[str]
+
+
+class TaskCollectStatus(_TaskCollectBase):
+    status: Literal["OK", "pending", "fail"]
+    task_list: Optional[List[TaskRead]] = Field(default=[])
+    log: Optional[str]
diff --git a/poetry.lock b/poetry.lock
index c1ec3f3ab..6105b97e0 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -28,7 +28,7 @@ tz = ["python-dateutil"]
 
 [[package]]
 name = "anyio"
-version = "3.6.1"
+version = "3.6.2"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 category = "main"
 optional = false
@@ -41,11 +41,11 @@ sniffio = ">=1.1"
 [package.extras]
 doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
 test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"]
-trio = ["trio (>=0.16)"]
+trio = ["trio (>=0.16,<0.22)"]
 
 [[package]]
 name = "asttokens"
-version = "2.0.8"
+version = "2.1.0"
 description = "Annotate AST trees with source code positions"
 category = "dev"
 optional = false
@@ -69,11 +69,11 @@ python-versions = ">=3.5"
 dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"]
 docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"]
 tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"]
-tests_no_zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]
+tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]
 
 [[package]]
 name = "bcrypt"
-version = "4.0.0"
+version = "4.0.1"
 description = "Modern password hashing for your software and your servers"
 category = "dev"
 optional = false
@@ -85,7 +85,7 @@ typecheck = ["mypy"]
 
 [[package]]
 name = "bumpver"
-version = "2022.1118"
+version = "2022.1119"
 description = "Bump version numbers in project files."
 category = "dev"
 optional = false
@@ -101,7 +101,7 @@ toml = "*"
 
 [[package]]
 name = "certifi"
-version = "2022.9.14"
+version = "2022.9.24"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
@@ -118,17 +118,6 @@ python-versions = "*"
 [package.dependencies]
 pycparser = "*"
 
-[[package]]
-name = "charset-normalizer"
-version = "2.1.1"
-description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "dev"
-optional = false
-python-versions = ">=3.6.0"
-
-[package.extras]
-unicode_backport = ["unicodedata2"]
-
 [[package]]
 name = "click"
 version = "8.1.3"
@@ -142,11 +131,11 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
 [[package]]
 name = "colorama"
-version = "0.4.5"
+version = "0.4.6"
 description = "Cross-platform colored terminal text."
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 
 [[package]]
 name = "commonmark"
@@ -175,7 +164,7 @@ toml = ["tomli"]
 
 [[package]]
 name = "cryptography"
-version = "38.0.1"
+version = "38.0.3"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 category = "dev"
 optional = false
@@ -207,17 +196,6 @@ executing = ">=0.8.0,<1.0.0"
 [package.extras]
 pygments = ["pygments (>=2.2.0)"]
 
-[[package]]
-name = "dill"
-version = "0.3.5.1"
-description = "serialize all of python"
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
-
-[package.extras]
-graph = ["objgraph (>=1.7.2)"]
-
 [[package]]
 name = "dnspython"
 version = "2.2.1"
@@ -236,8 +214,8 @@ wmi = ["wmi (>=1.5.1,<2.0.0)"]
 
 [[package]]
 name = "email-validator"
-version = "1.2.1"
-description = "A robust email syntax and deliverability validation library."
+version = "1.3.0"
+description = "A robust email address syntax and deliverability validation library."
 category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
@@ -246,6 +224,17 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 dnspython = ">=1.15.0"
 idna = ">=2.0.0"
 
+[[package]]
+name = "exceptiongroup"
+version = "1.0.1"
+description = "Backport of PEP 654 (exception groups)"
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+test = ["pytest (>=6)"]
+
 [[package]]
 name = "executing"
 version = "0.10.0"
@@ -274,25 +263,24 @@ test = ["anyio[trio] (>=3.2.1,<4.0.0)", "black (==22.3.0)", "databases[sqlite] (
 
 [[package]]
 name = "fastapi-users"
-version = "10.1.5"
+version = "10.2.1"
 description = "Ready-to-use and customizable users management for FastAPI"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 
 [package.dependencies]
-email-validator = ">=1.1.0,<1.3"
+email-validator = ">=1.1.0,<1.4"
 fastapi = ">=0.65.2"
-httpx-oauth = {version = ">=0.4,<0.8", optional = true, markers = "extra == \"oauth\""}
+httpx-oauth = {version = ">=0.4,<0.11", optional = true, markers = "extra == \"oauth\""}
 makefun = ">=1.11.2,<2.0.0"
 passlib = {version = "1.7.4", extras = ["bcrypt"]}
-pyjwt = {version = "2.4.0", extras = ["crypto"]}
+pyjwt = {version = "2.6.0", extras = ["crypto"]}
 python-multipart = "0.0.5"
 
 [package.extras]
 beanie = ["fastapi-users-db-beanie (>=1.0.0)"]
-dev = ["asgi_lifespan", "black", "bumpversion", "codecov", "flake8", "flake8-docstrings", "flit", "httpx", "httpx-oauth", "isort", "markdown-include", "mike", "mkdocs", "mkdocs-material", "mkdocs-mermaid2-plugin", "mypy", "pygments", "pymdown-extensions", "pytest", "pytest-asyncio", "pytest-cov", "pytest-mock", "requests", "types-redis", "uvicorn"]
-oauth = ["httpx-oauth (>=0.4,<0.8)"]
+oauth = ["httpx-oauth (>=0.4,<0.11)"]
 redis = ["redis (>=4.3.3,<5.0.0)"]
 sqlalchemy = ["fastapi-users-db-sqlalchemy (>=4.0.0)"]
 
@@ -311,7 +299,7 @@ sqlmodel = "*"
 
 [[package]]
 name = "fractal-server"
-version = "0.2.0"
+version = "1.0.0a0"
 description = "Server component of the Fractal analytics platform"
 category = "dev"
 optional = false
@@ -323,43 +311,29 @@ alembic = ">=1.8.0,<2.0.0"
 fastapi = ">=0.78.0,<0.79.0"
 fastapi-users = {version = ">=10.1.1,<11.0.0", extras = ["oauth"]}
 fastapi-users-db-sqlmodel = ">=0.2.0,<0.3.0"
-fractal-client = "<1.0.0"
-parsl = ">=1.3.0dev0,<2.0.0"
 python-dotenv = ">=0.20.0,<0.21.0"
 SQLAlchemy-Utils = ">=0.38.3,<0.39.0"
 sqlmodel = ">=0.0.8,<0.0.9"
 uvicorn = ">=0.18.2,<0.19.0"
 
 [package.extras]
+parsl = ["parsl[monitoring] @ git+https://github.com/fractal-analytics-platform/parsl.git@1.3.1-dev"]
 tasks-core = ["fractal-tasks-core (<1.0.0)"]
 
-[[package]]
-name = "globus-sdk"
-version = "3.12.0"
-description = "Globus SDK for Python"
-category = "dev"
-optional = false
-python-versions = ">=3.6"
-
-[package.dependencies]
-cryptography = ">=3.3.1,<3.4.0 || >3.4.0"
-pyjwt = {version = ">=2.0.0,<3.0.0", extras = ["crypto"]}
-requests = ">=2.19.1,<3.0.0"
-typing-extensions = {version = ">=4.0", markers = "python_version < \"3.10\""}
-
-[package.extras]
-dev = ["black (==21.12b0)", "coverage (<7)", "flake8 (<5)", "flake8-bugbear (==21.11.29)", "furo (==2022.1.2)", "isort (<6)", "mypy (==0.960)", "pytest (<7)", "pytest-xdist (<3)", "responses (==0.17.0)", "responses (==0.21.0)", "sphinx (<5)", "sphinx-issues (<3)", "types-docutils", "types-jwt", "types-requests", "typing-extensions"]
-
+[package.source]
+type = "url"
+url = "https://github.com/fractal-analytics-platform/fractal-server/releases/download/1.0.0a0/fractal_server-1.0.0a0-py3-none-any.whl"
 [[package]]
 name = "greenlet"
-version = "1.1.3"
+version = "2.0.1"
 description = "Lightweight in-process concurrent programming"
 category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 
 [package.extras]
-docs = ["Sphinx"]
+docs = ["Sphinx", "docutils (<0.18)"]
+test = ["faulthandler", "objgraph", "psutil"]
 
 [[package]]
 name = "h11"
@@ -409,7 +383,7 @@ socks = ["socksio (>=1.0.0,<2.0.0)"]
 
 [[package]]
 name = "httpx-oauth"
-version = "0.7.0"
+version = "0.10.1"
 description = "Async OAuth client using HTTPX"
 category = "dev"
 optional = false
@@ -431,7 +405,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "importlib-metadata"
-version = "4.12.0"
+version = "5.0.0"
 description = "Read metadata from Python packages"
 category = "dev"
 optional = false
@@ -441,13 +415,13 @@ python-versions = ">=3.7"
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["jaraco.packaging (>=9)", "rst.linker (>=1.9)", "sphinx"]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
 perf = ["ipython"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
+testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
 
 [[package]]
 name = "importlib-resources"
-version = "5.9.0"
+version = "5.10.0"
 description = "Read resources from Python packages"
 category = "dev"
 optional = false
@@ -457,8 +431,8 @@ python-versions = ">=3.7"
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
-docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx"]
-testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
+testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
 
 [[package]]
 name = "iniconfig"
@@ -485,8 +459,8 @@ optional = false
 python-versions = "*"
 
 [[package]]
-name = "Mako"
-version = "1.2.2"
+name = "mako"
+version = "1.2.3"
 description = "A super-fast templating language that borrows the best ideas from the existing templating languages."
 category = "dev"
 optional = false
@@ -501,7 +475,7 @@ lingua = ["lingua"]
 testing = ["pytest"]
 
 [[package]]
-name = "MarkupSafe"
+name = "markupsafe"
 version = "2.1.1"
 description = "Safely add untrusted strings to HTML/XML markup."
 category = "dev"
@@ -519,60 +493,6 @@ python-versions = ">=3.6"
 [package.dependencies]
 pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
-[[package]]
-name = "paramiko"
-version = "2.11.0"
-description = "SSH2 protocol library"
-category = "dev"
-optional = false
-python-versions = "*"
-
-[package.dependencies]
-bcrypt = ">=3.1.3"
-cryptography = ">=2.5"
-pynacl = ">=1.0.1"
-six = "*"
-
-[package.extras]
-all = ["bcrypt (>=3.1.3)", "gssapi (>=1.4.1)", "invoke (>=1.3)", "pyasn1 (>=0.1.7)", "pynacl (>=1.0.1)", "pywin32 (>=2.1.8)"]
-ed25519 = ["bcrypt (>=3.1.3)", "pynacl (>=1.0.1)"]
-gssapi = ["gssapi (>=1.4.1)", "pyasn1 (>=0.1.7)", "pywin32 (>=2.1.8)"]
-invoke = ["invoke (>=1.3)"]
-
-[[package]]
-name = "parsl"
-version = "1.3.0.dev1"
-description = "Simple data dependent workflows in Python"
-category = "dev"
-optional = false
-python-versions = ">=3.7.0"
-
-[package.dependencies]
-dill = "*"
-globus-sdk = "*"
-paramiko = "*"
-psutil = ">=5.5.1"
-pyzmq = ">=17.1.2"
-requests = "*"
-setproctitle = "*"
-tblib = "*"
-typeguard = ">=2.10"
-typing-extensions = "*"
-
-[package.extras]
-all = ["Flask (>=1.0.2)", "azure (<=4)", "boto3", "cffi", "flask-sqlalchemy", "google-api-python-client", "google-auth", "ipython", "jsonschema", "kubernetes", "mpi4py", "msrestazure", "nbsphinx", "networkx (>=2.5,<2.6)", "oauth-ssh (>=0.9)", "pandas (<1.4)", "plotly", "pydot", "python-daemon", "python-gssapi", "pyyaml", "sphinx-rtd-theme", "sqlalchemy (>=1.3.0)", "work-queue"]
-aws = ["boto3"]
-azure = ["azure (<=4)", "msrestazure"]
-docs = ["ipython", "nbsphinx", "sphinx-rtd-theme"]
-extreme_scale = ["mpi4py"]
-flux = ["cffi", "jsonschema", "pyyaml"]
-google_cloud = ["google-api-python-client", "google-auth"]
-gssapi = ["python-gssapi"]
-kubernetes = ["kubernetes"]
-monitoring = ["Flask (>=1.0.2)", "flask-sqlalchemy", "networkx (>=2.5,<2.6)", "pandas (<1.4)", "plotly", "pydot", "python-daemon", "sqlalchemy (>=1.3.0)"]
-oauth_ssh = ["oauth-ssh (>=0.9)"]
-workqueue = ["work-queue"]
-
 [[package]]
 name = "passlib"
 version = "1.7.4"
@@ -587,7 +507,7 @@ bcrypt = {version = ">=3.1.0", optional = true, markers = "extra == \"bcrypt\""}
 [package.extras]
 argon2 = ["argon2-cffi (>=18.2.0)"]
 bcrypt = ["bcrypt (>=3.1.0)"]
-build_docs = ["cloud-sptheme (>=1.10.1)", "sphinx (>=1.6)", "sphinxcontrib-fulltoc (>=1.2.0)"]
+build-docs = ["cloud-sptheme (>=1.10.1)", "sphinx (>=1.6)", "sphinxcontrib-fulltoc (>=1.2.0)"]
 totp = ["cryptography"]
 
 [[package]]
@@ -613,25 +533,6 @@ python-versions = ">=3.6"
 dev = ["pre-commit", "tox"]
 testing = ["pytest", "pytest-benchmark"]
 
-[[package]]
-name = "psutil"
-version = "5.9.2"
-description = "Cross-platform lib for process and system monitoring in Python."
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
-
-[package.extras]
-test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
-
-[[package]]
-name = "py"
-version = "1.11.0"
-description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
-
 [[package]]
 name = "pycparser"
 version = "2.21"
@@ -656,7 +557,7 @@ dotenv = ["python-dotenv (>=0.10.4)"]
 email = ["email-validator (>=1.0.3)"]
 
 [[package]]
-name = "Pygments"
+name = "pygments"
 version = "2.13.0"
 description = "Pygments is a syntax highlighting package written in Python."
 category = "main"
@@ -667,37 +568,22 @@ python-versions = ">=3.6"
 plugins = ["importlib-metadata"]
 
 [[package]]
-name = "PyJWT"
-version = "2.4.0"
+name = "pyjwt"
+version = "2.6.0"
 description = "JSON Web Token implementation in Python"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-cryptography = {version = ">=3.3.1", optional = true, markers = "extra == \"crypto\""}
+cryptography = {version = ">=3.4.0", optional = true, markers = "extra == \"crypto\""}
 
 [package.extras]
-crypto = ["cryptography (>=3.3.1)"]
-dev = ["coverage[toml] (==5.0.4)", "cryptography (>=3.3.1)", "mypy", "pre-commit", "pytest (>=6.0.0,<7.0.0)", "sphinx", "sphinx-rtd-theme", "zope.interface"]
-docs = ["sphinx", "sphinx-rtd-theme", "zope.interface"]
+crypto = ["cryptography (>=3.4.0)"]
+dev = ["coverage[toml] (==5.0.4)", "cryptography (>=3.4.0)", "pre-commit", "pytest (>=6.0.0,<7.0.0)", "sphinx (>=4.5.0,<5.0.0)", "sphinx-rtd-theme", "zope.interface"]
+docs = ["sphinx (>=4.5.0,<5.0.0)", "sphinx-rtd-theme", "zope.interface"]
 tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"]
 
-[[package]]
-name = "PyNaCl"
-version = "1.5.0"
-description = "Python binding to the Networking and Cryptography (NaCl) library"
-category = "dev"
-optional = false
-python-versions = ">=3.6"
-
-[package.dependencies]
-cffi = ">=1.4.1"
-
-[package.extras]
-docs = ["sphinx (>=1.6.5)", "sphinx_rtd_theme"]
-tests = ["hypothesis (>=3.27.0)", "pytest (>=3.2.1,!=3.3.0)"]
-
 [[package]]
 name = "pyparsing"
 version = "3.0.9"
@@ -711,7 +597,7 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pytest"
-version = "7.1.3"
+version = "7.2.0"
 description = "pytest: simple powerful testing with Python"
 category = "dev"
 optional = false
@@ -720,11 +606,11 @@ python-versions = ">=3.7"
 [package.dependencies]
 attrs = ">=19.2.0"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
+exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
 iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<2.0"
-py = ">=1.8.2"
-tomli = ">=1.0.0"
+tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
 
 [package.extras]
 testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
@@ -765,36 +651,6 @@ python-versions = "*"
 [package.dependencies]
 six = ">=1.4.0"
 
-[[package]]
-name = "pyzmq"
-version = "24.0.1"
-description = "Python bindings for 0MQ"
-category = "dev"
-optional = false
-python-versions = ">=3.6"
-
-[package.dependencies]
-cffi = {version = "*", markers = "implementation_name == \"pypy\""}
-py = {version = "*", markers = "implementation_name == \"pypy\""}
-
-[[package]]
-name = "requests"
-version = "2.28.1"
-description = "Python HTTP for Humans."
-category = "dev"
-optional = false
-python-versions = ">=3.7, <4"
-
-[package.dependencies]
-certifi = ">=2017.4.17"
-charset-normalizer = ">=2,<3"
-idna = ">=2.5,<4"
-urllib3 = ">=1.21.1,<1.27"
-
-[package.extras]
-socks = ["PySocks (>=1.5.6,!=1.5.7)"]
-use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
-
 [[package]]
 name = "rfc3986"
 version = "1.5.0"
@@ -811,7 +667,7 @@ idna2008 = ["idna"]
 
 [[package]]
 name = "rich"
-version = "12.5.1"
+version = "12.6.0"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 category = "main"
 optional = false
@@ -825,28 +681,17 @@ typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.9
 [package.extras]
 jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"]
 
-[[package]]
-name = "setproctitle"
-version = "1.3.2"
-description = "A Python module to customize the process title"
-category = "dev"
-optional = false
-python-versions = ">=3.7"
-
-[package.extras]
-test = ["pytest"]
-
 [[package]]
 name = "setuptools"
-version = "65.3.0"
+version = "65.5.1"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
 testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
 [[package]]
@@ -866,7 +711,7 @@ optional = false
 python-versions = ">=3.7"
 
 [[package]]
-name = "SQLAlchemy"
+name = "sqlalchemy"
 version = "1.4.35"
 description = "Database Abstraction Library"
 category = "main"
@@ -881,24 +726,24 @@ aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
 aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing_extensions (!=3.10.0.1)"]
 asyncio = ["greenlet (!=0.4.17)"]
 asyncmy = ["asyncmy (>=0.2.3,!=0.2.4)", "greenlet (!=0.4.17)"]
-mariadb_connector = ["mariadb (>=1.0.1)"]
+mariadb-connector = ["mariadb (>=1.0.1)"]
 mssql = ["pyodbc"]
-mssql_pymssql = ["pymssql"]
-mssql_pyodbc = ["pyodbc"]
+mssql-pymssql = ["pymssql"]
+mssql-pyodbc = ["pyodbc"]
 mypy = ["mypy (>=0.910)", "sqlalchemy2-stubs"]
 mysql = ["mysqlclient (>=1.4.0)", "mysqlclient (>=1.4.0,<2)"]
-mysql_connector = ["mysql-connector-python"]
+mysql-connector = ["mysql-connector-python"]
 oracle = ["cx_oracle (>=7)", "cx_oracle (>=7,<8)"]
 postgresql = ["psycopg2 (>=2.7)"]
-postgresql_asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
-postgresql_pg8000 = ["pg8000 (>=1.16.6)"]
-postgresql_psycopg2binary = ["psycopg2-binary"]
-postgresql_psycopg2cffi = ["psycopg2cffi"]
+postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
+postgresql-pg8000 = ["pg8000 (>=1.16.6)"]
+postgresql-psycopg2binary = ["psycopg2-binary"]
+postgresql-psycopg2cffi = ["psycopg2cffi"]
 pymysql = ["pymysql", "pymysql (<1)"]
 sqlcipher = ["sqlcipher3_binary"]
 
 [[package]]
-name = "SQLAlchemy-Utils"
+name = "sqlalchemy-utils"
 version = "0.38.3"
 description = "Various utility functions for SQLAlchemy."
 category = "dev"
@@ -918,13 +763,13 @@ password = ["passlib (>=1.6,<2.0)"]
 pendulum = ["pendulum (>=2.0.5)"]
 phone = ["phonenumbers (>=5.9.2)"]
 test = ["Jinja2 (>=2.3)", "Pygments (>=1.2)", "backports.zoneinfo", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "isort (>=4.2.2)", "pg8000 (>=1.12.4)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
-test_all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "arrow (>=0.3.4)", "backports.zoneinfo", "colour (>=0.0.4)", "cryptography (>=0.6)", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "furl (>=0.4.1)", "intervals (>=0.7.1)", "isort (>=4.2.2)", "passlib (>=1.6,<2.0)", "pendulum (>=2.0.5)", "pg8000 (>=1.12.4)", "phonenumbers (>=5.9.2)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
+test-all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "arrow (>=0.3.4)", "backports.zoneinfo", "colour (>=0.0.4)", "cryptography (>=0.6)", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "furl (>=0.4.1)", "intervals (>=0.7.1)", "isort (>=4.2.2)", "passlib (>=1.6,<2.0)", "pendulum (>=2.0.5)", "pg8000 (>=1.12.4)", "phonenumbers (>=5.9.2)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
 timezone = ["python-dateutil"]
 url = ["furl (>=0.4.1)"]
 
 [[package]]
 name = "sqlalchemy2-stubs"
-version = "0.0.2a27"
+version = "0.0.2a29"
 description = "Typing Stubs for SQLAlchemy 1.4"
 category = "main"
 optional = false
@@ -961,14 +806,6 @@ typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""
 [package.extras]
 full = ["itsdangerous", "jinja2", "python-multipart", "pyyaml", "requests"]
 
-[[package]]
-name = "tblib"
-version = "1.7.0"
-description = "Traceback serialization library."
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
-
 [[package]]
 name = "toml"
 version = "0.10.2"
@@ -985,39 +822,14 @@ category = "dev"
 optional = false
 python-versions = ">=3.7"
 
-[[package]]
-name = "typeguard"
-version = "2.13.3"
-description = "Run-time type checker for Python"
-category = "dev"
-optional = false
-python-versions = ">=3.5.3"
-
-[package.extras]
-doc = ["sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["mypy", "pytest", "typing-extensions"]
-
 [[package]]
 name = "typing-extensions"
-version = "4.3.0"
+version = "4.4.0"
 description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
-[[package]]
-name = "urllib3"
-version = "1.26.12"
-description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4"
-
-[package.extras]
-brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"]
-secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
-socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
-
 [[package]]
 name = "uvicorn"
 version = "0.18.3"
@@ -1035,20 +847,20 @@ standard = ["colorama (>=0.4)", "httptools (>=0.4.0)", "python-dotenv (>=0.13)",
 
 [[package]]
 name = "zipp"
-version = "3.8.1"
+version = "3.10.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx"]
-testing = ["func-timeout", "jaraco.itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
+testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
 
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.8"
-content-hash = "20a725a91add6c82692b69b9db94449017bb234528a4e29f3b35bb0e53d83988"
+content-hash = "48e3d3fe0c5350fb2006177cc37632e3f076bc41b18a160b4b217830df23b18c"
 
 [metadata.files]
 aiosqlite = [
@@ -1060,38 +872,47 @@ alembic = [
     {file = "alembic-1.8.1.tar.gz", hash = "sha256:cd0b5e45b14b706426b833f06369b9a6d5ee03f826ec3238723ce8caaf6e5ffa"},
 ]
 anyio = [
-    {file = "anyio-3.6.1-py3-none-any.whl", hash = "sha256:cb29b9c70620506a9a8f87a309591713446953302d7d995344d0d7c6c0c9a7be"},
-    {file = "anyio-3.6.1.tar.gz", hash = "sha256:413adf95f93886e442aea925f3ee43baa5a765a64a0f52c6081894f9992fdd0b"},
+    {file = "anyio-3.6.2-py3-none-any.whl", hash = "sha256:fbbe32bd270d2a2ef3ed1c5d45041250284e31fc0a4df4a5a6071842051a51e3"},
+    {file = "anyio-3.6.2.tar.gz", hash = "sha256:25ea0d673ae30af41a0c442f81cf3b38c7e79fdc7b60335a4c14e05eb0947421"},
 ]
 asttokens = [
-    {file = "asttokens-2.0.8-py2.py3-none-any.whl", hash = "sha256:e3305297c744ae53ffa032c45dc347286165e4ffce6875dc662b205db0623d86"},
-    {file = "asttokens-2.0.8.tar.gz", hash = "sha256:c61e16246ecfb2cde2958406b4c8ebc043c9e6d73aaa83c941673b35e5d3a76b"},
+    {file = "asttokens-2.1.0-py2.py3-none-any.whl", hash = "sha256:1b28ed85e254b724439afc783d4bee767f780b936c3fe8b3275332f42cf5f561"},
+    {file = "asttokens-2.1.0.tar.gz", hash = "sha256:4aa76401a151c8cc572d906aad7aea2a841780834a19d780f4321c0fe1b54635"},
 ]
 attrs = [
     {file = "attrs-22.1.0-py2.py3-none-any.whl", hash = "sha256:86efa402f67bf2df34f51a335487cf46b1ec130d02b8d39fd248abfd30da551c"},
     {file = "attrs-22.1.0.tar.gz", hash = "sha256:29adc2665447e5191d0e7c568fde78b21f9672d344281d0c6e1ab085429b22b6"},
 ]
 bcrypt = [
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-    {file = "setproctitle-1.3.2-pp38-pypy38_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e1aafc91cbdacc9e5fe712c52077369168e6b6c346f3a9d51bf600b53eae56bb"},
-    {file = "setproctitle-1.3.2-pp38-pypy38_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b617f12c9be61e8f4b2857be4a4319754756845dbbbd9c3718f468bbb1e17bcb"},
-    {file = "setproctitle-1.3.2-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:b2c9cb2705fc84cb8798f1ba74194f4c080aaef19d9dae843591c09b97678e98"},
-    {file = "setproctitle-1.3.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl", hash = "sha256:a149a5f7f2c5a065d4e63cb0d7a4b6d3b66e6e80f12e3f8827c4f63974cbf122"},
-    {file = "setproctitle-1.3.2-pp39-pypy39_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:2e3ac25bfc4a0f29d2409650c7532d5ddfdbf29f16f8a256fc31c47d0dc05172"},
-    {file = "setproctitle-1.3.2-pp39-pypy39_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:65d884e22037b23fa25b2baf1a3316602ed5c5971eb3e9d771a38c3a69ce6e13"},
-    {file = "setproctitle-1.3.2-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:7aa0aac1711fadffc1d51e9d00a3bea61f68443d6ac0241a224e4d622489d665"},
-    {file = "setproctitle-1.3.2.tar.gz", hash = "sha256:b9fb97907c830d260fa0658ed58afd48a86b2b88aac521135c352ff7fd3477fd"},
+    {file = "rich-12.6.0-py3-none-any.whl", hash = "sha256:a4eb26484f2c82589bd9a17c73d32a010b1e29d89f1604cd9bf3a2097b81bb5e"},
+    {file = "rich-12.6.0.tar.gz", hash = "sha256:ba3a3775974105c221d31141f2c116f4fd65c5ceb0698657a11e9f295ec93fd0"},
 ]
 setuptools = [
-    {file = "setuptools-65.3.0-py3-none-any.whl", hash = "sha256:2e24e0bec025f035a2e72cdd1961119f557d78ad331bb00ff82efb2ab8da8e82"},
-    {file = "setuptools-65.3.0.tar.gz", hash = "sha256:7732871f4f7fa58fb6bdcaeadb0161b2bd046c85905dbaa066bdcbcc81953b57"},
+    {file = "setuptools-65.5.1-py3-none-any.whl", hash = "sha256:d0b9a8433464d5800cbe05094acf5c6d52a91bfac9b52bcfc4d41382be5d5d31"},
+    {file = "setuptools-65.5.1.tar.gz", hash = "sha256:e197a19aa8ec9722928f2206f8de752def0e4c9fc6953527360d1c36d94ddb2f"},
 ]
 six = [
     {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
@@ -1741,7 +1355,7 @@ sniffio = [
     {file = "sniffio-1.3.0-py3-none-any.whl", hash = "sha256:eecefdce1e5bbfb7ad2eeaabf7c1eeb404d7757c379bd1f7e5cce9d8bf425384"},
     {file = "sniffio-1.3.0.tar.gz", hash = "sha256:e60305c5e5d314f5389259b7f22aaa33d8f7dee49763119234af3755c55b9101"},
 ]
-SQLAlchemy = [
+sqlalchemy = [
     {file = "SQLAlchemy-1.4.35-cp27-cp27m-macosx_10_14_x86_64.whl", hash = "sha256:093b3109c2747d5dc0fa4314b1caf4c7ca336d5c8c831e3cfbec06a7e861e1e6"},
     {file = "SQLAlchemy-1.4.35-cp27-cp27m-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:c6fb6b9ed1d0be7fa2c90be8ad2442c14cbf84eb0709dd1afeeff1e511550041"},
     {file = "SQLAlchemy-1.4.35-cp27-cp27m-win32.whl", hash = "sha256:d38a49aa75a5759d0d118e26701d70c70a37b896379115f8386e91b0444bfa70"},
@@ -1779,13 +1393,13 @@ SQLAlchemy = [
     {file = "SQLAlchemy-1.4.35-cp39-cp39-win_amd64.whl", hash = "sha256:53c7469b86a60fe2babca4f70111357e6e3d5150373bc85eb3b914356983e89a"},
     {file = "SQLAlchemy-1.4.35.tar.gz", hash = "sha256:2ffc813b01dc6473990f5e575f210ca5ac2f5465ace3908b78ffd6d20058aab5"},
 ]
-SQLAlchemy-Utils = [
+sqlalchemy-utils = [
     {file = "SQLAlchemy-Utils-0.38.3.tar.gz", hash = "sha256:9f9afba607a40455cf703adfa9846584bf26168a0c5a60a70063b70d65051f4d"},
     {file = "SQLAlchemy_Utils-0.38.3-py3-none-any.whl", hash = "sha256:5c13b5d08adfaa85f3d4e8ec09a75136216fad41346980d02974a70a77988bf9"},
 ]
 sqlalchemy2-stubs = [
-    {file = "sqlalchemy2-stubs-0.0.2a27.tar.gz", hash = "sha256:f79bce50b7837a2c2374ef4480b41e2b8a8226f313f347dc2a70526a4191db93"},
-    {file = "sqlalchemy2_stubs-0.0.2a27-py3-none-any.whl", hash = "sha256:6cea12fec3c261f6e0e14a95d2cc4914e373095e68ec4fc2eb473183ac2b17a2"},
+    {file = "sqlalchemy2-stubs-0.0.2a29.tar.gz", hash = "sha256:1bbc6aebd76db7c0351a9f45cc1c4e8ac335ba150094c2af091e8b87b9118419"},
+    {file = "sqlalchemy2_stubs-0.0.2a29-py3-none-any.whl", hash = "sha256:ece266cdabf3797b13ddddba27561b67ae7dedc038942bf66e045e978a5e3a66"},
 ]
 sqlmodel = [
     {file = "sqlmodel-0.0.8-py3-none-any.whl", hash = "sha256:0fd805719e0c5d4f22be32eb3ffc856eca3f7f20e8c7aa3e117ad91684b518ee"},
@@ -1795,10 +1409,6 @@ starlette = [
     {file = "starlette-0.19.1-py3-none-any.whl", hash = "sha256:5a60c5c2d051f3a8eb546136aa0c9399773a689595e099e0877704d5888279bf"},
     {file = "starlette-0.19.1.tar.gz", hash = "sha256:c6d21096774ecb9639acad41b86b7706e52ba3bf1dc13ea4ed9ad593d47e24c7"},
 ]
-tblib = [
-    {file = "tblib-1.7.0-py2.py3-none-any.whl", hash = "sha256:289fa7359e580950e7d9743eab36b0691f0310fce64dee7d9c31065b8f723e23"},
-    {file = "tblib-1.7.0.tar.gz", hash = "sha256:059bd77306ea7b419d4f76016aef6d7027cc8a0785579b5aad198803435f882c"},
-]
 toml = [
     {file = "toml-0.10.2-py2.py3-none-any.whl", hash = "sha256:806143ae5bfb6a3c6e736a764057db0e6a0e05e338b5630894a5f779cabb4f9b"},
     {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"},
@@ -1807,23 +1417,15 @@ tomli = [
     {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
     {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
 ]
-typeguard = [
-    {file = "typeguard-2.13.3-py3-none-any.whl", hash = "sha256:5e3e3be01e887e7eafae5af63d1f36c849aaa94e3a0112097312aabfa16284f1"},
-    {file = "typeguard-2.13.3.tar.gz", hash = "sha256:00edaa8da3a133674796cf5ea87d9f4b4c367d77476e185e80251cc13dfbb8c4"},
-]
 typing-extensions = [
-    {file = "typing_extensions-4.3.0-py3-none-any.whl", hash = "sha256:25642c956049920a5aa49edcdd6ab1e06d7e5d467fc00e0506c44ac86fbfca02"},
-    {file = "typing_extensions-4.3.0.tar.gz", hash = "sha256:e6d2677a32f47fc7eb2795db1dd15c1f34eff616bcaf2cfb5e997f854fa1c4a6"},
-]
-urllib3 = [
-    {file = "urllib3-1.26.12-py2.py3-none-any.whl", hash = "sha256:b930dd878d5a8afb066a637fbb35144fe7901e3b209d1cd4f524bd0e9deee997"},
-    {file = "urllib3-1.26.12.tar.gz", hash = "sha256:3fa96cf423e6987997fc326ae8df396db2a8b7c667747d47ddd8ecba91f4a74e"},
+    {file = "typing_extensions-4.4.0-py3-none-any.whl", hash = "sha256:16fa4864408f655d35ec496218b85f79b3437c829e93320c7c9215ccfd92489e"},
+    {file = "typing_extensions-4.4.0.tar.gz", hash = "sha256:1511434bb92bf8dd198c12b1cc812e800d4181cfcb867674e0f8279cc93087aa"},
 ]
 uvicorn = [
     {file = "uvicorn-0.18.3-py3-none-any.whl", hash = "sha256:0abd429ebb41e604ed8d2be6c60530de3408f250e8d2d84967d85ba9e86fe3af"},
     {file = "uvicorn-0.18.3.tar.gz", hash = "sha256:9a66e7c42a2a95222f76ec24a4b754c158261c4696e683b9dadc72b590e0311b"},
 ]
 zipp = [
-    {file = "zipp-3.8.1-py3-none-any.whl", hash = "sha256:47c40d7fe183a6f21403a199b3e4192cca5774656965b0a4988ad2f8feb5f009"},
-    {file = "zipp-3.8.1.tar.gz", hash = "sha256:05b45f1ee8f807d0cc928485ca40a07cb491cf092ff587c0df9cb1fd154848d2"},
+    {file = "zipp-3.10.0-py3-none-any.whl", hash = "sha256:4fcb6f278987a6605757302a6e40e896257570d11c51628968ccb2a47e80c6c1"},
+    {file = "zipp-3.10.0.tar.gz", hash = "sha256:7a7262fd930bd3e36c50b9a64897aec3fafff3dfdeec9623ae22b40e93f99bb8"},
 ]
diff --git a/pyproject.toml b/pyproject.toml
index 2da4c3800..34c8052fa 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -3,9 +3,9 @@ name = "fractal-client"
 version = "0.2.9"
 description = "Client and common components of the Fractal analytics platform"
 authors = [
-    "Jacopo Nespolo <jacopo.nespolo@exact-lab.it>",
-    "Marco Franzon <marco.franzon@exact-lab.it>",
     "Tommaso Comparin <tommaso.comparin@exact-lab.it>",
+    "Marco Franzon <marco.franzon@exact-lab.it>",
+    "Jacopo Nespolo <jacopo.nespolo@exact-lab.it>",
 ]
 readme = "README.md"
 packages = [
@@ -28,8 +28,8 @@ devtools = "^0.9.0"
 pytest = "^7.1.2"
 bumpver = "^2022.1118"
 pytest-asyncio = "^0.19.0"
-# fractal-server = "<1.0.0"
-fractal-server = {git="https://github.com/fractal-analytics-platform/fractal-server"}
+# fractal-server = "^1.0.0"
+fractal-server = {url = "https://github.com/fractal-analytics-platform/fractal-server/releases/download/1.0.0a0/fractal_server-1.0.0a0-py3-none-any.whl"}
 coverage = {extras = ["toml"], version = "^6.5.0"}
 
 [build-system]


Test patch:
diff --git a/tests/conftest.py b/tests/conftest.py
index 5e0054c6d..9bf1d3237 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -14,6 +14,11 @@
 environ["SLURM_USER"] = "slurm_user"
 
 
+@pytest.fixture(scope="session")
+def testdata_path() -> Path:
+    return Path(__file__).parent / "data"
+
+
 @pytest.fixture(scope="session")
 def event_loop():
     import asyncio
diff --git a/tests/data/fractal_tasks_dummy-0.1.0-py3-none-any.whl b/tests/data/fractal_tasks_dummy-0.1.0-py3-none-any.whl
new file mode 100644
index 000000000..ccd3f5d11
Binary files /dev/null and b/tests/data/fractal_tasks_dummy-0.1.0-py3-none-any.whl differ
diff --git a/tests/fixtures_testserver.py b/tests/fixtures_testserver.py
index 79e1a50d3..0daa0dcc6 100644
--- a/tests/fixtures_testserver.py
+++ b/tests/fixtures_testserver.py
@@ -1,6 +1,6 @@
 import asyncio
+import logging
 from os import environ
-from typing import Optional
 
 import pytest
 
@@ -41,6 +41,8 @@ async def testserver(temp_data_dir, temp_db_path):
     environ["JWT_SECRET_KEY"] = "secret_key"
     environ["DEPLOYMENT_TYPE"] = "development"
     environ["DATA_DIR_ROOT"] = temp_data_dir.as_posix()
+    environ["FRACTAL_ROOT"] = temp_data_dir.as_posix()
+    environ["FRACTAL_LOGGING_LEVEL"] = str(logging.DEBUG)
 
     environ["DB_ENGINE"] = "sqlite"
 
@@ -82,8 +84,6 @@ async def __register_user(email: str, password: str, slurm_user: str):
             f"{testserver}/auth/register",
             json=dict(email=email, password=password, slurm_user=slurm_user),
         )
-        from devtools import debug
-        debug(res.json())
         assert res.status_code == 201
         return res.json()
 
diff --git a/tests/test_task.py b/tests/test_task.py
index 8fbed2b50..1b7468f7b 100644
--- a/tests/test_task.py
+++ b/tests/test_task.py
@@ -1,9 +1,50 @@
+import asyncio
+
 import pytest
+from devtools import debug
 
 
-async def test_task_list(clear_db, testserver, register_user, invoke):
-    raise NotImplementedError
-    # TODO add tasks
+async def test_task_collection_and_list(
+    clear_db, testserver, register_user, invoke, testdata_path, temp_data_dir
+):
+    """
+    GIVEN a pip installable package containing fractal-compatible tasks
+    WHEN the collection subcommand is called
+    THEN
+        * the collection is initiated in the background
+        * the server returns immediately and the client displays the
+
+    WHEN the list command is called
+    THEN the tasks collected are shown
+    """
+    PACKAGE_NAME = testdata_path / "fractal_tasks_dummy-0.1.0-py3-none-any.whl"
+
+    res0 = await invoke(f"task collect {PACKAGE_NAME}")
+    debug(res0)
+    res0.show()
+    venv_path = res0.data["venv_path"]
+
+    # cf. fixtures_testserver.py::testserver
+    FRACTAL_ROOT = temp_data_dir
+    collection_file = FRACTAL_ROOT / venv_path / "collection.json"
+
+    while True:
+        res1 = await invoke(f"task check-collection {venv_path}")
+        debug(res1)
+        res1.show()
+        expected_status = "OK" if collection_file.exists() else "pending"
+        assert res1.data["status"] == expected_status
+        await asyncio.sleep(1)
+        if expected_status == "OK":
+            break
+
+    res2 = await invoke(f"task check-collection {venv_path}")
+    debug(res2)
+    res2.show()
+    assert res2.data["status"] == "OK"
+
+    # LIST
+
     res = await invoke("task list")
     res.show()
     assert res.retcode == 0
@@ -17,17 +58,13 @@ async def test_task_apply(clear_db, testserver, register_user, invoke):
     # add input resource
     # check that fractal_tasks_core is present (should be optional)
     # try to apply the dummy or another taks
-    assert False
+    raise NotImplementedError
 
 
+@pytest.mark.xfail
 async def test_edit_task(
     clear_db, testserver, register_user, invoke, clear_task_cache
 ):
+    # TODO:
+    # Decide what it means to edit a task
     raise NotImplementedError
-    # TODO create task
-    task_name = "FOO"
-
-    res = await invoke(f"task edit {task_name} --name 'new task name'")
-    res.show()
-    assert res.retcode == 0
-    assert res.data["name"] == "new task name"