Repository: Sage-Bionetworks/schematic (language: python)

Issue:
[bug fix] Remove `great_expectations/expectations/Manifest_test_suite.json` before running validation tests
## Context
Related to: https://sagebionetworks.jira.com/browse/FDS-1459

1. Currently when running `python -m rule-combos`, the code assumes that `Manifest_test_suite.json` does not exist. If `test_manifest_suite.json` exists, it would raise an error and cause the rule combination tests to fail. 
2. I tried assessing if this will affect the users by having an empty `Manifest_test_suite.json`.. When I ran: 
```
schematic model --config config.yml validate --manifest_path tests/data/mock_manifests/Valid_Test_Manifest.csv --data_type MockComponent
```
I got an error: 
```
  File "/Users/lpeng/Library/Caches/pypoetry/virtualenvs/schematicpy-9OomxyhV-py3.10/lib/python3.10/site-packages/great_expectations/data_context/store/expectations_store.py", line 185, in add
    raise gx_exceptions.ExpectationSuiteError(
great_expectations.exceptions.exceptions.ExpectationSuiteError: An ExpectationSuite named Manifest_test_suite already exists.
```

## Solution 
1. Delete `great_expectations/expectations/test_manifest_suite.json` before running `test_rule_combinations`. Since `test_rule_combinations` is under class `TestManifestValidation`, and I only want the check to happen once for all parameters under `test_rule_combinations`, I put the check under class `TestManifestValidation`
2. For the same code, I also added it in `validateModelManifest` to avoid users running into the issue. 

## Test
1. Make sure that all validation tests still pass in 235.33s (0:03:55). Without the check, all the validation tests finished in 224.16s (0:03:44). 
2. I also made sure that `pytest -s tests/test_validation.py::TestManifestValidation` and `pytest -s tests/test_validation.py::TestManifestValidation::test_rule_combinations` could be run without errors. 
3. Made sure that `schematic model --config config.yml validate --manifest_path tests/data/mock_manifests/Valid_Test_Manifest.csv --data_type MockComponent` could be run without errors 




Discussion / hints:

Fix patch:
diff --git a/great_expectations/great_expectations.yml b/great_expectations/great_expectations.yml
deleted file mode 100644
index 60b73a8f3..000000000
--- a/great_expectations/great_expectations.yml
+++ /dev/null
@@ -1,109 +0,0 @@
-# Welcome to Great Expectations! Always know what to expect from your data.
-#
-# Here you can define datasources, batch kwargs generators, integrations and
-# more. This file is intended to be committed to your repo. For help with
-# configuration please:
-#   - Read our docs: https://docs.greatexpectations.io/en/latest/reference/spare_parts/data_context_reference.html#configuration
-#   - Join our slack channel: http://greatexpectations.io/slack
-
-# config_version refers to the syntactic version of this config file, and is used in maintaining backwards compatibility
-# It is auto-generated and usually does not need to be changed.
-config_version: 3.0
-
-# Datasources tell Great Expectations where your data lives and how to get it.
-# You can use the CLI command `great_expectations datasource new` to help you
-# add a new datasource. Read more at https://docs.greatexpectations.io/en/latest/reference/core_concepts/datasource.html
-datasources:
-  Manifest:
-    module_name: great_expectations.datasource
-    execution_engine:
-      module_name: great_expectations.execution_engine
-      class_name: PandasExecutionEngine
-    data_connectors:
-      default_runtime_data_connector_name:
-        module_name: great_expectations.datasource.data_connector
-        class_name: RuntimeDataConnector
-        batch_identifiers:
-          - default_identifier
-    class_name: Datasource
-  example_datasource:
-    module_name: great_expectations.datasource
-    execution_engine:
-      module_name: great_expectations.execution_engine
-      class_name: PandasExecutionEngine
-    data_connectors:
-      default_runtime_data_connector_name:
-        module_name: great_expectations.datasource.data_connector
-        class_name: RuntimeDataConnector
-        batch_identifiers:
-          - default_identifier_name
-    class_name: Datasource
-config_variables_file_path: uncommitted/config_variables.yml
-
-# The plugins_directory will be added to your python path for custom modules
-# used to override and extend Great Expectations.
-plugins_directory: plugins/
-
-stores:
-# Stores are configurable places to store things like Expectations, Validations
-# Data Docs, and more. These are for advanced users only - most users can simply
-# leave this section alone.
-#
-# Three stores are required: expectations, validations, and
-# evaluation_parameters, and must exist with a valid store entry. Additional
-# stores can be configured for uses such as data_docs, etc.
-  expectations_store:
-    class_name: ExpectationsStore
-    store_backend:
-      class_name: TupleFilesystemStoreBackend
-      base_directory: expectations/
-
-  validations_store:
-    class_name: ValidationsStore
-    store_backend:
-      class_name: TupleFilesystemStoreBackend
-      base_directory: uncommitted/validations/
-
-  evaluation_parameter_store:
-    # Evaluation Parameters enable dynamic expectations. Read more here:
-    # https://docs.greatexpectations.io/en/latest/reference/core_concepts/evaluation_parameters.html
-    class_name: EvaluationParameterStore
-
-  checkpoint_store:
-    class_name: CheckpointStore
-    store_backend:
-      class_name: TupleFilesystemStoreBackend
-      suppress_store_backend_id: true
-      base_directory: checkpoints/
-
-  profiler_store:
-    class_name: ProfilerStore
-    store_backend:
-      class_name: TupleFilesystemStoreBackend
-      suppress_store_backend_id: true
-      base_directory: profilers/
-
-expectations_store_name: expectations_store
-validations_store_name: validations_store
-evaluation_parameter_store_name: evaluation_parameter_store
-checkpoint_store_name: checkpoint_store
-
-data_docs_sites:
-  # Data Docs make it simple to visualize data quality in your project. These
-  # include Expectations, Validations & Profiles. The are built for all
-  # Datasources from JSON artifacts in the local repo including validations &
-  # profiles from the uncommitted directory. Read more at https://docs.greatexpectations.io/en/latest/reference/core_concepts/data_docs.html
-  local_site:
-    class_name: SiteBuilder
-    # set to false to hide how-to buttons in Data Docs
-    show_how_to_buttons: true
-    store_backend:
-      class_name: TupleFilesystemStoreBackend
-      base_directory: uncommitted/data_docs/local_site/
-    site_index_builder:
-      class_name: DefaultSiteIndexBuilder
-
-anonymous_usage_statistics:
-  data_context_id: 1130ca8d-9731-45d9-bc05-2032535250c8
-  enabled: true
-notebooks:
diff --git a/poetry.lock b/poetry.lock
index e5a9d8c6e..438b83061 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
@@ -35,13 +35,13 @@ dev = ["black", "docutils", "flake8", "ipython", "m2r", "mistune (<2.0.0)", "pyt
 
 [[package]]
 name = "anyio"
-version = "4.0.0"
+version = "4.1.0"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "anyio-4.0.0-py3-none-any.whl", hash = "sha256:cfdb2b588b9fc25ede96d8db56ed50848b0b649dca3dd1df0b11f683bb9e0b5f"},
-    {file = "anyio-4.0.0.tar.gz", hash = "sha256:f7ed51751b2c2add651e5747c891b47e26d2a21be5d32d9311dfe9692f3e5d7a"},
+    {file = "anyio-4.1.0-py3-none-any.whl", hash = "sha256:56a415fbc462291813a94528a779597226619c8e78af7de0507333f700011e5f"},
+    {file = "anyio-4.1.0.tar.gz", hash = "sha256:5a0bec7085176715be77df87fc66d6c9d70626bd752fcc85f57cdbee5b3760da"},
 ]
 
 [package.dependencies]
@@ -50,9 +50,9 @@ idna = ">=2.8"
 sniffio = ">=1.1"
 
 [package.extras]
-doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)"]
-test = ["anyio[trio]", "coverage[toml] (>=7)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
-trio = ["trio (>=0.22)"]
+doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
+trio = ["trio (>=0.23)"]
 
 [[package]]
 name = "appnope"
@@ -221,6 +221,17 @@ files = [
 [package.extras]
 dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
+[[package]]
+name = "backoff"
+version = "2.2.1"
+description = "Function decoration for backoff and retry"
+optional = false
+python-versions = ">=3.7,<4.0"
+files = [
+    {file = "backoff-2.2.1-py3-none-any.whl", hash = "sha256:63579f9a0628e06278f7e47b7d7d5b6ce20dc65c5e96a6f3ca99a6adca0396e8"},
+    {file = "backoff-2.2.1.tar.gz", hash = "sha256:03f829f5bb1923180821643f8753b0502c3b682293992485b0eef2807afa5cba"},
+]
+
 [[package]]
 name = "beautifulsoup4"
 version = "4.12.2"
@@ -241,29 +252,29 @@ lxml = ["lxml"]
 
 [[package]]
 name = "black"
-version = "23.10.1"
+version = "23.11.0"
 description = "The uncompromising code formatter."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "black-23.10.1-cp310-cp310-macosx_10_16_arm64.whl", hash = "sha256:ec3f8e6234c4e46ff9e16d9ae96f4ef69fa328bb4ad08198c8cee45bb1f08c69"},
-    {file = "black-23.10.1-cp310-cp310-macosx_10_16_x86_64.whl", hash = "sha256:1b917a2aa020ca600483a7b340c165970b26e9029067f019e3755b56e8dd5916"},
-    {file = "black-23.10.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9c74de4c77b849e6359c6f01987e94873c707098322b91490d24296f66d067dc"},
-    {file = "black-23.10.1-cp310-cp310-win_amd64.whl", hash = "sha256:7b4d10b0f016616a0d93d24a448100adf1699712fb7a4efd0e2c32bbb219b173"},
-    {file = "black-23.10.1-cp311-cp311-macosx_10_16_arm64.whl", hash = "sha256:b15b75fc53a2fbcac8a87d3e20f69874d161beef13954747e053bca7a1ce53a0"},
-    {file = "black-23.10.1-cp311-cp311-macosx_10_16_x86_64.whl", hash = "sha256:e293e4c2f4a992b980032bbd62df07c1bcff82d6964d6c9496f2cd726e246ace"},
-    {file = "black-23.10.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7d56124b7a61d092cb52cce34182a5280e160e6aff3137172a68c2c2c4b76bcb"},
-    {file = "black-23.10.1-cp311-cp311-win_amd64.whl", hash = "sha256:3f157a8945a7b2d424da3335f7ace89c14a3b0625e6593d21139c2d8214d55ce"},
-    {file = "black-23.10.1-cp38-cp38-macosx_10_16_arm64.whl", hash = "sha256:cfcce6f0a384d0da692119f2d72d79ed07c7159879d0bb1bb32d2e443382bf3a"},
-    {file = "black-23.10.1-cp38-cp38-macosx_10_16_x86_64.whl", hash = "sha256:33d40f5b06be80c1bbce17b173cda17994fbad096ce60eb22054da021bf933d1"},
-    {file = "black-23.10.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:840015166dbdfbc47992871325799fd2dc0dcf9395e401ada6d88fe11498abad"},
-    {file = "black-23.10.1-cp38-cp38-win_amd64.whl", hash = "sha256:037e9b4664cafda5f025a1728c50a9e9aedb99a759c89f760bd83730e76ba884"},
-    {file = "black-23.10.1-cp39-cp39-macosx_10_16_arm64.whl", hash = "sha256:7cb5936e686e782fddb1c73f8aa6f459e1ad38a6a7b0e54b403f1f05a1507ee9"},
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-    {file = "black-23.10.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5ed45ac9a613fb52dad3b61c8dea2ec9510bf3108d4db88422bacc7d1ba1243d"},
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-    {file = "black-23.10.1.tar.gz", hash = "sha256:1f8ce316753428ff68749c65a5f7844631aa18c8679dfd3ca9dc1a289979c258"},
+    {file = "black-23.11.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:dbea0bb8575c6b6303cc65017b46351dc5953eea5c0a59d7b7e3a2d2f433a911"},
+    {file = "black-23.11.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:412f56bab20ac85927f3a959230331de5614aecda1ede14b373083f62ec24e6f"},
+    {file = "black-23.11.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d136ef5b418c81660ad847efe0e55c58c8208b77a57a28a503a5f345ccf01394"},
+    {file = "black-23.11.0-cp310-cp310-win_amd64.whl", hash = "sha256:6c1cac07e64433f646a9a838cdc00c9768b3c362805afc3fce341af0e6a9ae9f"},
+    {file = "black-23.11.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:cf57719e581cfd48c4efe28543fea3d139c6b6f1238b3f0102a9c73992cbb479"},
+    {file = "black-23.11.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:698c1e0d5c43354ec5d6f4d914d0d553a9ada56c85415700b81dc90125aac244"},
+    {file = "black-23.11.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:760415ccc20f9e8747084169110ef75d545f3b0932ee21368f63ac0fee86b221"},
+    {file = "black-23.11.0-cp311-cp311-win_amd64.whl", hash = "sha256:58e5f4d08a205b11800332920e285bd25e1a75c54953e05502052738fe16b3b5"},
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+    {file = "black-23.11.0-cp38-cp38-win_amd64.whl", hash = "sha256:fc7f6a44d52747e65a02558e1d807c82df1d66ffa80a601862040a43ec2e3142"},
+    {file = "black-23.11.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:7f622b6822f02bfaf2a5cd31fdb7cd86fcf33dab6ced5185c35f5db98260b055"},
+    {file = "black-23.11.0-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:250d7e60f323fcfc8ea6c800d5eba12f7967400eb6c2d21ae85ad31c204fb1f4"},
+    {file = "black-23.11.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5133f5507007ba08d8b7b263c7aa0f931af5ba88a29beacc4b2dc23fcefe9c06"},
+    {file = "black-23.11.0-cp39-cp39-win_amd64.whl", hash = "sha256:421f3e44aa67138ab1b9bfbc22ee3780b22fa5b291e4db8ab7eee95200726b07"},
+    {file = "black-23.11.0-py3-none-any.whl", hash = "sha256:54caaa703227c6e0c87b76326d0862184729a69b73d3b7305b6288e1d830067e"},
+    {file = "black-23.11.0.tar.gz", hash = "sha256:4c68855825ff432d197229846f971bc4d6666ce90492e5b02013bcaca4d9ab05"},
 ]
 
 [package.dependencies]
@@ -312,13 +323,13 @@ files = [
 
 [[package]]
 name = "certifi"
-version = "2023.7.22"
+version = "2023.11.17"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
-    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
+    {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"},
+    {file = "certifi-2023.11.17.tar.gz", hash = "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1"},
 ]
 
 [[package]]
@@ -540,22 +551,20 @@ files = [
 
 [[package]]
 name = "comm"
-version = "0.1.4"
+version = "0.2.0"
 description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc."
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "comm-0.1.4-py3-none-any.whl", hash = "sha256:6d52794cba11b36ed9860999cd10fd02d6b2eac177068fdd585e1e2f8a96e67a"},
-    {file = "comm-0.1.4.tar.gz", hash = "sha256:354e40a59c9dd6db50c5cc6b4acc887d82e9603787f83b68c01a80a923984d15"},
+    {file = "comm-0.2.0-py3-none-any.whl", hash = "sha256:2da8d9ebb8dd7bfc247adaff99f24dce705638a8042b85cb995066793e391001"},
+    {file = "comm-0.2.0.tar.gz", hash = "sha256:a517ea2ca28931c7007a7a99c562a0fa5883cfb48963140cf642c41c948498be"},
 ]
 
 [package.dependencies]
 traitlets = ">=4"
 
 [package.extras]
-lint = ["black (>=22.6.0)", "mdformat (>0.7)", "mdformat-gfm (>=0.3.5)", "ruff (>=0.0.156)"]
 test = ["pytest"]
-typing = ["mypy (>=0.990)"]
 
 [[package]]
 name = "connexion"
@@ -656,34 +665,34 @@ toml = ["tomli"]
 
 [[package]]
 name = "cryptography"
-version = "41.0.5"
+version = "41.0.7"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "cryptography-41.0.5-cp37-abi3-macosx_10_12_universal2.whl", hash = "sha256:da6a0ff8f1016ccc7477e6339e1d50ce5f59b88905585f77193ebd5068f1e797"},
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 ]
 
 [package.dependencies]
@@ -701,13 +710,13 @@ test-randomorder = ["pytest-randomly"]
 
 [[package]]
 name = "dateparser"
-version = "1.1.8"
+version = "1.2.0"
 description = "Date parsing library designed to parse dates from HTML pages"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -850,18 +859,32 @@ files = [
 
 [[package]]
 name = "exceptiongroup"
-version = "1.1.3"
+version = "1.2.0"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.extras]
 test = ["pytest (>=6)"]
 
+[[package]]
+name = "execnet"
+version = "2.0.2"
+description = "execnet: rapid multi-Python deployment"
+optional = false
+python-versions = ">=3.7"
+files = [
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+]
+
+[package.extras]
+testing = ["hatch", "pre-commit", "pytest", "tox"]
+
 [[package]]
 name = "executing"
 version = "2.0.1"
@@ -878,13 +901,13 @@ tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipyth
 
 [[package]]
 name = "fastjsonschema"
-version = "2.18.1"
+version = "2.19.0"
 description = "Fastest Python implementation of JSON schema"
 optional = false
 python-versions = "*"
 files = [
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 ]
 
 [package.extras]
@@ -956,13 +979,13 @@ files = [
 
 [[package]]
 name = "google-api-core"
-version = "2.12.0"
+version = "2.14.0"
 description = "Google API client core library"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -978,13 +1001,13 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"]
 
 [[package]]
 name = "google-api-python-client"
-version = "2.106.0"
+version = "2.108.0"
 description = "Google API Client Library for Python"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -1243,13 +1266,13 @@ pyparsing = {version = ">=2.4.2,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.0.2 || >3.0
 
 [[package]]
 name = "idna"
-version = "3.4"
+version = "3.6"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
 python-versions = ">=3.5"
 files = [
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 ]
 
 [[package]]
@@ -1331,13 +1354,13 @@ tests = ["pytest", "pytest-cov", "pytest-mock"]
 
 [[package]]
 name = "ipykernel"
-version = "6.26.0"
+version = "6.27.1"
 description = "IPython Kernel for Jupyter"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1364,24 +1387,23 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio"
 
 [[package]]
 name = "ipython"
-version = "8.17.2"
+version = "8.18.1"
 description = "IPython: Productive Interactive Computing"
 optional = false
 python-versions = ">=3.9"
 files = [
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 ]
 
 [package.dependencies]
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 colorama = {version = "*", markers = "sys_platform == \"win32\""}
 decorator = "*"
 exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
 jedi = ">=0.16"
 matplotlib-inline = "*"
 pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
-prompt-toolkit = ">=3.0.30,<3.0.37 || >3.0.37,<3.1.0"
+prompt-toolkit = ">=3.0.41,<3.1.0"
 pygments = ">=2.4.0"
 stack-data = "*"
 traitlets = ">=5"
@@ -1569,13 +1591,13 @@ files = [
 
 [[package]]
 name = "jsonschema"
-version = "4.19.2"
+version = "4.20.0"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "jsonschema-4.20.0.tar.gz", hash = "sha256:4f614fd46d8d61258610998997743ec5492a648b33cf478c1ddc23ed4598a5fa"},
 ]
 
 [package.dependencies]
@@ -1598,27 +1620,27 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 
 [[package]]
 name = "jsonschema-specifications"
-version = "2023.7.1"
+version = "2023.11.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "jsonschema_specifications-2023.11.1.tar.gz", hash = "sha256:c9b234904ffe02f079bf91b14d79987faa685fd4b39c377a0996954c0090b9ca"},
 ]
 
 [package.dependencies]
-referencing = ">=0.28.0"
+referencing = ">=0.31.0"
 
 [[package]]
 name = "jupyter-client"
-version = "8.5.0"
+version = "8.6.0"
 description = "Jupyter protocol implementation and client libraries"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1655,13 +1677,13 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "jupyter-events"
-version = "0.8.0"
+version = "0.9.0"
 description = "Jupyter Event System library"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1680,13 +1702,13 @@ test = ["click", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.19.0)", "p
 
 [[package]]
 name = "jupyter-lsp"
-version = "2.2.0"
+version = "2.2.1"
 description = "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1695,13 +1717,13 @@ jupyter-server = ">=1.1.2"
 
 [[package]]
 name = "jupyter-server"
-version = "2.9.1"
+version = "2.11.1"
 description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1710,7 +1732,7 @@ argon2-cffi = "*"
 jinja2 = "*"
 jupyter-client = ">=7.4.4"
 jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
-jupyter-events = ">=0.6.0"
+jupyter-events = ">=0.9.0"
 jupyter-server-terminals = "*"
 nbconvert = ">=6.4.4"
 nbformat = ">=5.3.0"
@@ -1750,13 +1772,13 @@ test = ["coverage", "jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-cov",
 
 [[package]]
 name = "jupyterlab"
-version = "4.0.7"
+version = "4.0.9"
 description = "JupyterLab computational environment"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1775,31 +1797,31 @@ tornado = ">=6.2.0"
 traitlets = "*"
 
 [package.extras]
-dev = ["black[jupyter] (==23.7.0)", "build", "bump2version", "coverage", "hatch", "pre-commit", "pytest-cov", "ruff (==0.0.286)"]
+dev = ["black[jupyter] (==23.10.1)", "build", "bump2version", "coverage", "hatch", "pre-commit", "pytest-cov", "ruff (==0.1.4)"]
 docs = ["jsx-lexer", "myst-parser", "pydata-sphinx-theme (>=0.13.0)", "pytest", "pytest-check-links", "pytest-tornasync", "sphinx (>=1.8,<7.2.0)", "sphinx-copybutton"]
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 [[package]]
 name = "jupyterlab-pygments"
-version = "0.2.2"
+version = "0.3.0"
 description = "Pygments theme using JupyterLab CSS variables"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
 name = "jupyterlab-server"
-version = "2.25.0"
+version = "2.25.2"
 description = "A set of server components for JupyterLab and JupyterLab like applications."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1815,7 +1837,7 @@ requests = ">=2.31"
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 [[package]]
 name = "jupyterlab-widgets"
@@ -1914,13 +1936,13 @@ files = [
 
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+version = "1.15.2"
 description = "Small library to dynamically create python functions."
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 [[package]]
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 [package.extras]
 dmypy = ["psutil (>=4.0)"]
 install-types = ["pip"]
+mypyc = ["setuptools (>=50)"]
 reports = ["lxml"]
 
 [[package]]
@@ -2087,13 +2110,13 @@ files = [
 
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@@ -2109,13 +2132,13 @@ test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=
 
 [[package]]
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 qtpdf = ["nbconvert[qtpng]"]
 qtpng = ["pyqtwebengine (>=5.15)"]
 serve = ["tornado (>=6.1)"]
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+test = ["flaky", "ipykernel", "ipywidgets (>=7)", "pytest"]
 webpdf = ["playwright"]
 
 [[package]]
@@ -2237,43 +2260,47 @@ test = ["pytest", "pytest-console-scripts", "pytest-jupyter", "pytest-tornasync"
 
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 [[package]]
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+]
+
+[package.dependencies]
+backoff = {version = ">=1.10.0,<3.0.0", markers = "python_version >= \"3.7\""}
+opentelemetry-proto = "1.21.0"
+
+[[package]]
+name = "opentelemetry-exporter-otlp-proto-http"
+version = "1.21.0"
+description = "OpenTelemetry Collector Protobuf over HTTP Exporter"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "opentelemetry_exporter_otlp_proto_http-1.21.0-py3-none-any.whl", hash = "sha256:56837773de6fb2714c01fc4895caebe876f6397bbc4d16afddf89e1299a55ee2"},
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+
+[package.dependencies]
+backoff = {version = ">=1.10.0,<3.0.0", markers = "python_version >= \"3.7\""}
+deprecated = ">=1.2.6"
+googleapis-common-protos = ">=1.52,<2.0"
+opentelemetry-api = ">=1.15,<2.0"
+opentelemetry-exporter-otlp-proto-common = "1.21.0"
+opentelemetry-proto = "1.21.0"
+opentelemetry-sdk = ">=1.21.0,<1.22.0"
+requests = ">=2.7,<3.0"
+
+[package.extras]
+test = ["responses (==0.22.0)"]
+
+[[package]]
+name = "opentelemetry-proto"
+version = "1.21.0"
+description = "OpenTelemetry Python Proto"
+optional = false
+python-versions = ">=3.7"
+files = [
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+    {file = "opentelemetry_proto-1.21.0.tar.gz", hash = "sha256:7d5172c29ed1b525b5ecf4ebe758c7138a9224441b3cfe683d0a237c33b1941f"},
+]
+
+[package.dependencies]
+protobuf = ">=3.19,<5.0"
+
+[[package]]
+name = "opentelemetry-sdk"
+version = "1.21.0"
+description = "OpenTelemetry Python SDK"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "opentelemetry_sdk-1.21.0-py3-none-any.whl", hash = "sha256:9fe633243a8c655fedace3a0b89ccdfc654c0290ea2d8e839bd5db3131186f73"},
+    {file = "opentelemetry_sdk-1.21.0.tar.gz", hash = "sha256:3ec8cd3020328d6bc5c9991ccaf9ae820ccb6395a5648d9a95d3ec88275b8879"},
+]
+
+[package.dependencies]
+opentelemetry-api = "1.21.0"
+opentelemetry-semantic-conventions = "0.42b0"
+typing-extensions = ">=3.7.4"
+
+[[package]]
+name = "opentelemetry-semantic-conventions"
+version = "0.42b0"
+description = "OpenTelemetry Semantic Conventions"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "opentelemetry_semantic_conventions-0.42b0-py3-none-any.whl", hash = "sha256:5cd719cbfec448af658860796c5d0fcea2fdf0945a2bed2363f42cb1ee39f526"},
+    {file = "opentelemetry_semantic_conventions-0.42b0.tar.gz", hash = "sha256:44ae67a0a3252a05072877857e5cc1242c98d4cf12870159f1a94bec800d38ec"},
+]
+
 [[package]]
 name = "overrides"
 version = "7.4.0"
@@ -2470,13 +2592,13 @@ dev = ["black", "hypothesis", "mypy", "pytest", "pytest-cov", "pytest-timeout",
 
 [[package]]
 name = "pexpect"
-version = "4.8.0"
+version = "4.9.0"
 description = "Pexpect allows easy control of interactive console applications."
 optional = false
 python-versions = "*"
 files = [
-    {file = "pexpect-4.8.0-py2.py3-none-any.whl", hash = "sha256:0b48a55dcb3c05f3329815901ea4fc1537514d6ba867a152b581d69ae3710937"},
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+    {file = "pexpect-4.9.0-py2.py3-none-any.whl", hash = "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523"},
+    {file = "pexpect-4.9.0.tar.gz", hash = "sha256:ee7d41123f3c9911050ea2c2dac107568dc43b2d3b0c7557a33212c398ead30f"},
 ]
 
 [package.dependencies]
@@ -2484,13 +2606,13 @@ ptyprocess = ">=0.5"
 
 [[package]]
 name = "platformdirs"
-version = "3.11.0"
+version = "4.0.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "platformdirs-3.11.0-py3-none-any.whl", hash = "sha256:e9d171d00af68be50e9202731309c4e658fd8bc76f55c11c7dd760d023bda68e"},
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+    {file = "platformdirs-4.0.0-py3-none-any.whl", hash = "sha256:118c954d7e949b35437270383a3f2531e99dd93cf7ce4dc8340d3356d30f173b"},
+    {file = "platformdirs-4.0.0.tar.gz", hash = "sha256:cb633b2bcf10c51af60beb0ab06d2f1d69064b43abf4c185ca6b28865f3f9731"},
 ]
 
 [package.extras]
@@ -2514,13 +2636,13 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "prometheus-client"
-version = "0.18.0"
+version = "0.19.0"
 description = "Python client for the Prometheus monitoring system."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "prometheus_client-0.18.0-py3-none-any.whl", hash = "sha256:8de3ae2755f890826f4b6479e5571d4f74ac17a81345fe69a6778fdb92579184"},
-    {file = "prometheus_client-0.18.0.tar.gz", hash = "sha256:35f7a8c22139e2bb7ca5a698e92d38145bc8dc74c1c0bf56f25cca886a764e17"},
+    {file = "prometheus_client-0.19.0-py3-none-any.whl", hash = "sha256:c88b1e6ecf6b41cd8fb5731c7ae919bf66df6ec6fafa555cd6c0e16ca169ae92"},
+    {file = "prometheus_client-0.19.0.tar.gz", hash = "sha256:4585b0d1223148c27a225b10dbec5ae9bc4c81a99a3fa80774fa6209935324e1"},
 ]
 
 [package.extras]
@@ -2528,13 +2650,13 @@ twisted = ["twisted"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.39"
+version = "3.0.41"
 description = "Library for building powerful interactive command lines in Python"
 optional = false
 python-versions = ">=3.7.0"
 files = [
-    {file = "prompt_toolkit-3.0.39-py3-none-any.whl", hash = "sha256:9dffbe1d8acf91e3de75f3b544e4842382fc06c6babe903ac9acb74dc6e08d88"},
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+    {file = "prompt_toolkit-3.0.41-py3-none-any.whl", hash = "sha256:f36fe301fafb7470e86aaf90f036eef600a3210be4decf461a5b1ca8403d3cb2"},
+    {file = "prompt_toolkit-3.0.41.tar.gz", hash = "sha256:941367d97fc815548822aa26c2a269fdc4eb21e9ec05fc5d447cf09bad5d75f0"},
 ]
 
 [package.dependencies]
@@ -2542,24 +2664,22 @@ wcwidth = "*"
 
 [[package]]
 name = "protobuf"
-version = "4.24.4"
+version = "4.25.1"
 description = ""
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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-    {file = "protobuf-4.24.4.tar.gz", hash = "sha256:5a70731910cd9104762161719c3d883c960151eea077134458503723b60e3667"},
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+    {file = "protobuf-4.25.1-cp39-cp39-win32.whl", hash = "sha256:8bdbeaddaac52d15c6dce38c71b03038ef7772b977847eb6d374fc86636fa510"},
+    {file = "protobuf-4.25.1-cp39-cp39-win_amd64.whl", hash = "sha256:becc576b7e6b553d22cbdf418686ee4daa443d7217999125c045ad56322dda10"},
+    {file = "protobuf-4.25.1-py3-none-any.whl", hash = "sha256:a19731d5e83ae4737bb2a089605e636077ac001d18781b3cf489b9546c7c80d6"},
+    {file = "protobuf-4.25.1.tar.gz", hash = "sha256:57d65074b4f5baa4ab5da1605c02be90ac20c8b40fb137d6a8df9f416b0d0ce2"},
 ]
 
 [[package]]
@@ -2628,13 +2748,13 @@ files = [
 
 [[package]]
 name = "pyasn1"
-version = "0.5.0"
+version = "0.5.1"
 description = "Pure-Python implementation of ASN.1 types and DER/BER/CER codecs (X.208)"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
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-    {file = "pyasn1-0.5.0.tar.gz", hash = "sha256:97b7290ca68e62a832558ec3976f15cbf911bf5d7c7039d8b861c2a0ece69fde"},
+    {file = "pyasn1-0.5.1-py2.py3-none-any.whl", hash = "sha256:4439847c58d40b1d0a573d07e3856e95333f1976294494c325775aeca506eb58"},
+    {file = "pyasn1-0.5.1.tar.gz", hash = "sha256:6d391a96e59b23130a5cfa74d6fd7f388dbbe26cc8f1edf39fdddf08d9d6676c"},
 ]
 
 [[package]]
@@ -2738,17 +2858,18 @@ files = [
 
 [[package]]
 name = "pygments"
-version = "2.16.1"
+version = "2.17.2"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "Pygments-2.16.1-py3-none-any.whl", hash = "sha256:13fc09fa63bc8d8671a6d247e1eb303c4b343eaee81d861f3404db2935653692"},
-    {file = "Pygments-2.16.1.tar.gz", hash = "sha256:1daff0494820c69bc8941e407aa20f577374ee88364ee10a98fdbe0aece96e29"},
+    {file = "pygments-2.17.2-py3-none-any.whl", hash = "sha256:b27c2826c47d0f3219f29554824c30c5e8945175d888647acd804ddd04af846c"},
+    {file = "pygments-2.17.2.tar.gz", hash = "sha256:da46cec9fd2de5be3a8a784f434e4c4ab670b4ff54d605c4c2717e9d49c4c367"},
 ]
 
 [package.extras]
 plugins = ["importlib-metadata"]
+windows-terminal = ["colorama (>=0.4.6)"]
 
 [[package]]
 name = "pygsheets"
@@ -2883,6 +3004,41 @@ pytest = ">=5.0"
 [package.extras]
 dev = ["pre-commit", "pytest-asyncio", "tox"]
 
+[[package]]
+name = "pytest-rerunfailures"
+version = "12.0"
+description = "pytest plugin to re-run tests to eliminate flaky failures"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "pytest-rerunfailures-12.0.tar.gz", hash = "sha256:784f462fa87fe9bdf781d0027d856b47a4bfe6c12af108f6bd887057a917b48e"},
+    {file = "pytest_rerunfailures-12.0-py3-none-any.whl", hash = "sha256:9a1afd04e21b8177faf08a9bbbf44de7a0fe3fc29f8ddbe83b9684bd5f8f92a9"},
+]
+
+[package.dependencies]
+packaging = ">=17.1"
+pytest = ">=6.2"
+
+[[package]]
+name = "pytest-xdist"
+version = "3.5.0"
+description = "pytest xdist plugin for distributed testing, most importantly across multiple CPUs"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "pytest-xdist-3.5.0.tar.gz", hash = "sha256:cbb36f3d67e0c478baa57fa4edc8843887e0f6cfc42d677530a36d7472b32d8a"},
+    {file = "pytest_xdist-3.5.0-py3-none-any.whl", hash = "sha256:d075629c7e00b611df89f490a5063944bee7a4362a5ff11c7cc7824a03dfce24"},
+]
+
+[package.dependencies]
+execnet = ">=1.1"
+pytest = ">=6.2.0"
+
+[package.extras]
+psutil = ["psutil (>=3.0)"]
+setproctitle = ["setproctitle"]
+testing = ["filelock"]
+
 [[package]]
 name = "python-dateutil"
 version = "2.8.2"
@@ -3169,13 +3325,13 @@ networkx = ["networkx (>=2.0.0,<3.0.0)"]
 
 [[package]]
 name = "referencing"
-version = "0.30.2"
+version = "0.31.0"
 description = "JSON Referencing + Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "referencing-0.31.0-py3-none-any.whl", hash = "sha256:381b11e53dd93babb55696c71cf42aef2d36b8a150c49bf0bc301e36d536c882"},
+    {file = "referencing-0.31.0.tar.gz", hash = "sha256:cc28f2c88fbe7b961a7817a0abc034c09a1e36358f82fedb4ffdf29a25398863"},
 ]
 
 [package.dependencies]
@@ -3345,110 +3501,110 @@ files = [
 
 [[package]]
 name = "rpds-py"
-version = "0.10.6"
+version = "0.13.1"
 description = "Python bindings to Rust's persistent data structures (rpds)"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -3862,60 +4018,60 @@ test = ["pytest"]
 
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 ]
 
 [package.dependencies]
@@ -3924,6 +4080,7 @@ typing-extensions = ">=4.2.0"
 
 [package.extras]
 aiomysql = ["aiomysql (>=0.2.0)", "greenlet (!=0.4.17)"]
+aioodbc = ["aioodbc", "greenlet (!=0.4.17)"]
 aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing-extensions (!=3.10.0.1)"]
 asyncio = ["greenlet (!=0.4.17)"]
 asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
@@ -3934,7 +4091,7 @@ mssql-pyodbc = ["pyodbc"]
 mypy = ["mypy (>=0.910)"]
 mysql = ["mysqlclient (>=1.4.0)"]
 mysql-connector = ["mysql-connector-python"]
-oracle = ["cx-oracle (>=7)"]
+oracle = ["cx-oracle (>=8)"]
 oracle-oracledb = ["oracledb (>=1.0.1)"]
 postgresql = ["psycopg2 (>=2.7)"]
 postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
@@ -4009,19 +4166,22 @@ Jinja2 = ">=2.0"
 
 [[package]]
 name = "synapseclient"
-version = "3.1.1"
+version = "3.2.0"
 description = "A client for Synapse, a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate."
 optional = false
 python-versions = ">=3.8"
 files = [
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 deprecated = ">=1.2.4,<2.0"
 keyring = ">=15,<23.5"
 "keyrings.alt" = {version = "3.1", markers = "sys_platform == \"linux\""}
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+opentelemetry-exporter-otlp-proto-http = ">=1.21.0,<1.22.0"
+opentelemetry-sdk = ">=1.21.0,<1.22.0"
 requests = ">=2.22.0,<3.0"
 urllib3 = ">=1.26.18,<2"
 
@@ -4063,13 +4223,13 @@ doc = ["reno", "sphinx", "tornado (>=4.5)"]
 
 [[package]]
 name = "terminado"
-version = "0.17.1"
+version = "0.18.0"
 description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
@@ -4080,6 +4240,7 @@ tornado = ">=6.1.0"
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
 test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
+typing = ["mypy (>=1.6,<2.0)", "traitlets (>=5.11.1)"]
 
 [[package]]
 name = "tinycss2"
@@ -4123,13 +4284,13 @@ files = [
 
 [[package]]
 name = "tomlkit"
-version = "0.12.1"
+version = "0.12.3"
 description = "Style preserving TOML library"
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 python-versions = ">=3.7"
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 ]
 
 [[package]]
@@ -4185,18 +4346,18 @@ telegram = ["requests"]
 
 [[package]]
 name = "traitlets"
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+version = "5.14.0"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
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 [package.extras]
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+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"]
 
 [[package]]
 name = "types-python-dateutil"
@@ -4317,13 +4478,13 @@ test = ["flake8 (>=2.4.0)", "isort (>=4.2.2)", "pytest (>=2.2.3)"]
 
 [[package]]
 name = "wcwidth"
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 description = "Measures the displayed width of unicode strings in a terminal"
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 ]
 
 [[package]]
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 description = "Module for decorators, wrappers and monkey patching."
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+    {file = "wrapt-1.16.0-cp37-cp37m-win32.whl", hash = "sha256:9153ed35fc5e4fa3b2fe97bddaa7cbec0ed22412b85bcdaf54aeba92ea37428c"},
+    {file = "wrapt-1.16.0-cp37-cp37m-win_amd64.whl", hash = "sha256:66dfbaa7cfa3eb707bbfcd46dab2bc6207b005cbc9caa2199bcbc81d95071a00"},
+    {file = "wrapt-1.16.0-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:1dd50a2696ff89f57bd8847647a1c363b687d3d796dc30d4dd4a9d1689a706f0"},
+    {file = "wrapt-1.16.0-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:44a2754372e32ab315734c6c73b24351d06e77ffff6ae27d2ecf14cf3d229202"},
+    {file = "wrapt-1.16.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:8e9723528b9f787dc59168369e42ae1c3b0d3fadb2f1a71de14531d321ee05b0"},
+    {file = "wrapt-1.16.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:dbed418ba5c3dce92619656802cc5355cb679e58d0d89b50f116e4a9d5a9603e"},
+    {file = "wrapt-1.16.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:941988b89b4fd6b41c3f0bfb20e92bd23746579736b7343283297c4c8cbae68f"},
+    {file = "wrapt-1.16.0-cp38-cp38-musllinux_1_1_aarch64.whl", hash = "sha256:6a42cd0cfa8ffc1915aef79cb4284f6383d8a3e9dcca70c445dcfdd639d51267"},
+    {file = "wrapt-1.16.0-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:1ca9b6085e4f866bd584fb135a041bfc32cab916e69f714a7d1d397f8c4891ca"},
+    {file = "wrapt-1.16.0-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:d5e49454f19ef621089e204f862388d29e6e8d8b162efce05208913dde5b9ad6"},
+    {file = "wrapt-1.16.0-cp38-cp38-win32.whl", hash = "sha256:c31f72b1b6624c9d863fc095da460802f43a7c6868c5dda140f51da24fd47d7b"},
+    {file = "wrapt-1.16.0-cp38-cp38-win_amd64.whl", hash = "sha256:490b0ee15c1a55be9c1bd8609b8cecd60e325f0575fc98f50058eae366e01f41"},
+    {file = "wrapt-1.16.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:9b201ae332c3637a42f02d1045e1d0cccfdc41f1f2f801dafbaa7e9b4797bfc2"},
+    {file = "wrapt-1.16.0-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:2076fad65c6736184e77d7d4729b63a6d1ae0b70da4868adeec40989858eb3fb"},
+    {file = "wrapt-1.16.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c5cd603b575ebceca7da5a3a251e69561bec509e0b46e4993e1cac402b7247b8"},
+    {file = "wrapt-1.16.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:b47cfad9e9bbbed2339081f4e346c93ecd7ab504299403320bf85f7f85c7d46c"},
+    {file = "wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f8212564d49c50eb4565e502814f694e240c55551a5f1bc841d4fcaabb0a9b8a"},
+    {file = "wrapt-1.16.0-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:5f15814a33e42b04e3de432e573aa557f9f0f56458745c2074952f564c50e664"},
+    {file = "wrapt-1.16.0-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:db2e408d983b0e61e238cf579c09ef7020560441906ca990fe8412153e3b291f"},
+    {file = "wrapt-1.16.0-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:edfad1d29c73f9b863ebe7082ae9321374ccb10879eeabc84ba3b69f2579d537"},
+    {file = "wrapt-1.16.0-cp39-cp39-win32.whl", hash = "sha256:ed867c42c268f876097248e05b6117a65bcd1e63b779e916fe2e33cd6fd0d3c3"},
+    {file = "wrapt-1.16.0-cp39-cp39-win_amd64.whl", hash = "sha256:eb1b046be06b0fce7249f1d025cd359b4b80fc1c3e24ad9eca33e0dcdb2e4a35"},
+    {file = "wrapt-1.16.0-py3-none-any.whl", hash = "sha256:6906c4100a8fcbf2fa735f6059214bb13b97f75b1a61777fcf6432121ef12ef1"},
+    {file = "wrapt-1.16.0.tar.gz", hash = "sha256:5f370f952971e7d17c7d1ead40e49f32345a7f7a5373571ef44d800d06b1899d"},
 ]
 
 [[package]]
@@ -4495,4 +4651,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9.0,<3.11"
-content-hash = "9b6667bb6094ab24849d6b47c8923dd8140a29ba14ffa45a0f4be52609b49f9c"
+content-hash = "7123714075e813a493e59782fa8922650a7b44835cf5656d029a4130d139b636"
diff --git a/pyproject.toml b/pyproject.toml
index 714512b84..c7c415349 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -74,15 +74,17 @@ schematic-db = {version = "0.0.dev33", extras = ["synapse"]}
 pyopenssl = "^23.0.0"
 typing-extensions = "<4.6.0"
 
-[tool.poetry.dev-dependencies]
+[tool.poetry.group.dev.dependencies]
 pytest = "^7.0.0"
 pytest-cov = "^4.0.0"
 pytest-mock = "^3.5.1"
+pytest-rerunfailures = "^12.0"
 flake8 = "^6.0.0"
 python-dotenv = "^0.21.0"
 black = "^23.7.0"
 mypy = "^1.4.1"
 pylint = "^2.16.1"
+pytest-xdist = "^3.5.0"
 
 [tool.poetry.group.aws]
 optional = true
diff --git a/schematic/manifest/generator.py b/schematic/manifest/generator.py
index 778ba411d..fa842eeb5 100644
--- a/schematic/manifest/generator.py
+++ b/schematic/manifest/generator.py
@@ -9,7 +9,8 @@
 from pathlib import Path
 import pygsheets as ps
 from tempfile import NamedTemporaryFile
-from typing import Dict, List, Optional, Tuple, Union
+from typing import Dict, List, Optional, Tuple, Union, BinaryIO, Literal
+from flask import send_from_directory
 
 from schematic.schemas.generator import SchemaGenerator
 from schematic.utils.google_api_utils import (
@@ -1309,7 +1310,7 @@ def set_dataframe_by_url(
         sh = gc.open_by_url(manifest_url)
         wb = sh[0]
 
-        wb.set_dataframe(manifest_df, (1, 1))
+        wb.set_dataframe(manifest_df, (1, 1), fit=True)
 
         # update validation rules (i.e. no validation rules) for out of schema columns, if any
         # TODO: similarly clear formatting for out of schema columns, if any
@@ -1489,6 +1490,107 @@ def _handle_output_format_logic(self, output_format: str = None, output_path: st
         # Default return a DataFrame
         else:
             return dataframe
+    
+    @staticmethod
+    def create_single_manifest(jsonld: str, data_type: str, access_token:Optional[str]=None, dataset_id:Optional[str]=None, strict:Optional[bool]=True, title:Optional[str]=None, output_format:Literal["google_sheet", "excel", "dataframe"]="google_sheet", use_annotations:Optional[bool]=False) -> Union[str, pd.DataFrame, BinaryIO]:
+        """Create a single manifest
+
+        Args:
+            jsonld (str): jsonld schema 
+            data_type (str): data type of a manifest
+            access_token (str, optional): synapse access token. Required when getting an existing manifest. Defaults to None.
+            dataset_id (str, optional): dataset id when generating an existing manifest. Defaults to None.
+            strict (bool, optional): strictness with which to apply validation rules to google sheets. Defaults to True.
+            title (str, optional): title of a given manifest. Defaults to None.
+            output_format (str, optional): format of manifest. It has three options: google sheet, excel or dataframe. Defaults to None.
+            use_annotations (bool, optional): whether to use annotations. Defaults to False.
+
+        Returns:
+            Union[str, pd.DataFrame, BinaryIO]: Googlesheet URL or pandas dataframe or Excel.
+        """
+        # create object of type ManifestGenerator
+        manifest_generator = ManifestGenerator(
+            path_to_json_ld=jsonld,
+            title=title,
+            root=data_type,
+            use_annotations=use_annotations,
+            alphabetize_valid_values = 'ascending',
+        )
+
+        # if returning a dataframe
+        if output_format:
+            if "dataframe" in output_format:
+                output_format = "dataframe"
+
+        result = manifest_generator.get_manifest(
+            dataset_id=dataset_id, sheet_url=True, output_format=output_format, access_token=access_token, strict=strict,
+        )
+
+        # return an excel file if output_format is set to "excel"
+        if output_format == "excel":
+            dir_name = os.path.dirname(result)
+            file_name = os.path.basename(result)
+            mimetype='application/vnd.openxmlformats-officedocument.spreadsheetml.sheet'
+            return send_from_directory(directory=dir_name, path=file_name, as_attachment=True, mimetype=mimetype, max_age=0)
+               
+        return result
+    
+    @staticmethod
+    def create_manifests(jsonld:str, data_types:list, access_token:Optional[str]=None, dataset_ids:Optional[list]=None, output_format:Literal["google_sheet", "excel", "dataframe"]="google_sheet", title:Optional[str]=None, strict:Optional[bool]=True, use_annotations:Optional[bool]=False) -> Union[List[str], List[pd.DataFrame], BinaryIO]:
+        """Create multiple manifests
+
+        Args:
+            jsonld (str): jsonld schema 
+            data_type (list): a list of data types 
+            access_token (str, optional): synapse access token. Required when getting an existing manifest. Defaults to None.
+            dataset_id (list, optional): a list of dataset ids when generating an existing manifest. Defaults to None.
+            output_format (str, optional):format of manifest. It has three options: google sheet, excel or dataframe. Defaults to None.
+            title (str, optional): title of a given manifest. Defaults to None.
+            strict (bool, optional): strictness with which to apply validation rules to google sheets. Defaults to None.
+            use_annotations (bool, optional): whether to use annotations. Defaults to False.
+
+        Returns:
+            Union[List[str], List[pd.DataFrame], BinaryIO]: a list of Googlesheet URLs, a list of pandas dataframes or an Excel file.
+        """
+        all_results = []
+        if data_types[0] == 'all manifests':
+            sg = SchemaGenerator(path_to_json_ld=jsonld)
+            component_digraph = sg.se.get_digraph_by_edge_type('requiresComponent')
+            components = component_digraph.nodes()
+            for component in components:
+                if title:
+                    t = f'{title}.{component}.manifest'
+                else: 
+                    t = f'Example.{component}.manifest'
+                if output_format != "excel":
+                    result = ManifestGenerator.create_single_manifest(jsonld=jsonld, data_type=component, output_format=output_format, title=t, access_token=access_token, strict=strict, use_annotations=use_annotations)
+                    all_results.append(result)
+                else: 
+                    logger.error('Currently we do not support returning multiple files as Excel format at once. Please choose a different output format. ')
+        else:
+            for i, dt in enumerate(data_types):
+                if not title: 
+                    t = f'Example.{dt}.manifest'
+                else: 
+                    if len(data_types) > 1:
+                        t = f'{title}.{dt}.manifest'
+                    else: 
+                        t = title
+                if dataset_ids:
+                    # if a dataset_id is provided add this to the function call.
+                    result = ManifestGenerator.create_single_manifest(jsonld=jsonld, data_type=dt, dataset_id=dataset_ids[i], output_format=output_format, title=t, access_token=access_token, strict=strict, use_annotations=use_annotations)
+                else:
+                    result = ManifestGenerator.create_single_manifest(jsonld=jsonld, data_type=dt, output_format=output_format, title=t, access_token=access_token, strict=strict, use_annotations=use_annotations)
+
+                # if output is pandas dataframe or google sheet url
+                if isinstance(result, str) or isinstance(result, pd.DataFrame):
+                    all_results.append(result)
+                else: 
+                    if len(data_types) > 1:
+                        logger.warning(f'Currently we do not support returning multiple files as Excel format at once. Only {t} would get returned. ')
+                    return result
+        return all_results
+        
 
     def get_manifest(
         self, dataset_id: str = None, sheet_url: bool = None, json_schema: str = None, output_format: str = None, output_path: str = None, access_token: str = None, strict: Optional[bool]=None,
@@ -1506,7 +1608,6 @@ def get_manifest(
         Returns:
             Googlesheet URL, pandas dataframe, or an Excel spreadsheet 
         """
-
         # Handle case when no dataset ID is provided
         if not dataset_id:
             manifest_url = self.get_empty_manifest(json_schema_filepath=json_schema, strict=strict, sheet_url=sheet_url)
diff --git a/schematic/models/GE_Helpers.py b/schematic/models/GE_Helpers.py
index 73ad20709..e4de3310e 100644
--- a/schematic/models/GE_Helpers.py
+++ b/schematic/models/GE_Helpers.py
@@ -145,10 +145,9 @@ def build_expectation_suite(self,):
         }
         
         #create blank expectation suite
-        expectation_suite_name = "Manifest_test_suite"       
-        self.suite = self.context.create_expectation_suite(
-            expectation_suite_name=expectation_suite_name,
-            overwrite_existing=True
+        self.expectation_suite_name = "Manifest_test_suite"       
+        self.suite = self.context.add_expectation_suite(
+            expectation_suite_name=self.expectation_suite_name,
         )    
 
         #build expectation configurations for each expecation
@@ -307,9 +306,9 @@ def build_expectation_suite(self,):
                     )
         
             
-        self.context.save_expectation_suite(expectation_suite=self.suite, expectation_suite_name=expectation_suite_name)
+        self.context.update_expectation_suite(expectation_suite=self.suite,)
 
-        suite_identifier = ExpectationSuiteIdentifier(expectation_suite_name=expectation_suite_name)
+        suite_identifier = ExpectationSuiteIdentifier(expectation_suite_name=self.expectation_suite_name)
         self.context.build_data_docs(resource_identifiers=[suite_identifier])
         ##Webpage DataDocs opened here:
         #self.context.open_data_docs(resource_identifier=suite_identifier) 
@@ -370,7 +369,7 @@ def build_checkpoint(self):
                         "data_connector_name": "default_runtime_data_connector_name",
                         "data_asset_name": "Manifest",
                     },
-                    "expectation_suite_name": "Manifest_test_suite",
+                    "expectation_suite_name": self.expectation_suite_name,
                 }
             ],
         }
diff --git a/schematic/models/metadata.py b/schematic/models/metadata.py
index 278f4c396..15a4507b5 100644
--- a/schematic/models/metadata.py
+++ b/schematic/models/metadata.py
@@ -1,4 +1,5 @@
 import json
+import os
 import logging
 import string
 
@@ -186,8 +187,14 @@ def get_component_requirements(
 
     # TODO: abstract validation in its own module
     def validateModelManifest(
-        self, manifestPath: str, rootNode: str, restrict_rules: bool = False, jsonSchema: str = None, project_scope: List = None, access_token: str = None,
-    ) -> List[str]:
+        self,
+        manifestPath: str,
+        rootNode: str,
+        restrict_rules: bool = False,
+        jsonSchema: Optional[str] = None,
+        project_scope: Optional[List] = None,
+        access_token: Optional[str] = None,
+    ) -> tuple[list, list]:
         """Check if provided annotations manifest dataframe satisfies all model requirements.
 
         Args:
@@ -250,7 +257,11 @@ def validateModelManifest(
                 )
 
             return errors, warnings
-
+        
+        # check if suite has been created. If so, delete it
+        if os.path.exists("great_expectations/expectations/Manifest_test_suite.json"):
+            os.remove("great_expectations/expectations/Manifest_test_suite.json")
+            
         errors, warnings, manifest = validate_all(self, 
                                                   errors=errors, 
                                                   warnings=warnings, 
@@ -292,13 +303,13 @@ def submit_metadata_manifest(
         dataset_id: str,
         manifest_record_type: str,
         restrict_rules: bool,
-        validate_component: str = None,
+        access_token: Optional[str] = None,
+        validate_component: Optional[str] = None,
         use_schema_label: bool = True,
         hide_blanks: bool = False,
-        access_token: str = None,
         project_scope: List = None,
         table_manipulation: str = 'replace'
-    ) -> string:
+    ) -> str:
         """Wrap methods that are responsible for validation of manifests for a given component, and association of the
         same manifest file with a specified dataset.
         Args:
diff --git a/schematic/models/validate_manifest.py b/schematic/models/validate_manifest.py
index a525d0e7b..a6e365b6e 100644
--- a/schematic/models/validate_manifest.py
+++ b/schematic/models/validate_manifest.py
@@ -153,6 +153,7 @@ def validate_manifest_rules(
                 )       
             finally:
                 ge_helpers.context.delete_checkpoint(ge_helpers.checkpoint_name) 
+                ge_helpers.context.delete_expectation_suite(ge_helpers.expectation_suite_name)
         
             validation_results = results.list_validation_results()
             
diff --git a/schematic/store/synapse.py b/schematic/store/synapse.py
index f6e7e7096..fa08e09ba 100644
--- a/schematic/store/synapse.py
+++ b/schematic/store/synapse.py
@@ -163,9 +163,9 @@ class SynapseStorage(BaseStorage):
 
     def __init__(
         self,
-        token: str = None,  # optional parameter retrieved from browser cookie
-        access_token: str = None,
-        project_scope: List = None,
+        token: Optional[str] = None,  # optional parameter retrieved from browser cookie
+        access_token: Optional[str] = None,
+        project_scope: Optional[list] = None,
     ) -> None:
         """Initializes a SynapseStorage object.
         Args:
@@ -302,7 +302,7 @@ def getPaginatedRestResults(self, currentUserId: str) -> Dict[str, str]:
 
         return all_results
 
-    def getStorageProjects(self, project_scope: List = None) -> List[str]:
+    def getStorageProjects(self, project_scope: List = None) -> list[tuple[str, str]]:
         """Gets all storage projects the current user has access to, within the scope of the 'storageFileview' attribute.
 
         Returns:
@@ -350,7 +350,7 @@ def getStorageProjects(self, project_scope: List = None) -> List[str]:
 
         return sorted_projects_list
 
-    def getStorageDatasetsInProject(self, projectId: str) -> List[str]:
+    def getStorageDatasetsInProject(self, projectId: str) -> list[tuple[str, str]]:
         """Gets all datasets in folder under a given storage project that the current user has access to.
 
         Args:
@@ -699,7 +699,9 @@ def _get_file_entityIds(self, dataset_files: List,  only_new_files: bool = False
 
         return files
 
-    def getProjectManifests(self, projectId: str) -> List[str]:
+    def getProjectManifests(
+        self, projectId: str
+    ) -> list[tuple[tuple[str, str], tuple[str, str], tuple[str, str]]]:
         """Gets all metadata manifest files across all datasets in a specified project.
 
         Returns: A list of datasets per project; metadata manifest Synapse ID for each dataset; and the corresponding schema component of the manifest
@@ -1894,13 +1896,6 @@ def getDatasetAnnotations(
     def raise_final_error(retry_state):
         return retry_state.outcome.result()
 
-    @retry(stop = stop_after_attempt(5), 
-            wait = wait_chain(*[wait_fixed(10) for i in range (2)] + 
-                    [wait_fixed(15) for i in range(2)] + 
-                    [wait_fixed(20)]),
-            retry=retry_if_exception_type(LookupError),
-            retry_error_callback = raise_final_error)
-
     def checkIfinAssetView(self, syn_id) -> str:
         # get data in administrative fileview for this pipeline
         assetViewTable = self.getStorageFileviewTable()
@@ -1910,6 +1905,12 @@ def checkIfinAssetView(self, syn_id) -> str:
         else: 
             return False
 
+    @retry(stop = stop_after_attempt(5), 
+            wait = wait_chain(*[wait_fixed(10) for i in range (2)] + 
+                    [wait_fixed(15) for i in range(2)] + 
+                    [wait_fixed(20)]),
+            retry=retry_if_exception_type(LookupError),
+            retry_error_callback = raise_final_error)
     def getDatasetProject(self, datasetId: str) -> str:
         """Get parent project for a given dataset ID.
 
diff --git a/schematic/utils/validate_utils.py b/schematic/utils/validate_utils.py
index 3e694bce8..78c8277eb 100644
--- a/schematic/utils/validate_utils.py
+++ b/schematic/utils/validate_utils.py
@@ -6,6 +6,7 @@
 from schematic import LOADER
 from typing import List
 import numpy as np
+from numbers import Number
 
 def validate_schema(schema):
     """Validate schema against schema.org standard"""
@@ -75,11 +76,22 @@ def np_array_to_str_list(np_array):
     return np.char.mod('%d', np_array).tolist()
 
 def iterable_to_str_list(iterable):
-    "Parse an iterable into a list of strings"
-    strlist = []
+    """
+    Parse an object into a list of strings
+    Accepts str, Number, and iterable inputs
+    """
 
-    for element in iterable:
-        strlist.append(str(element))
+    # If object is a string, just return wrapped as a list
+    if isinstance(iterable, str):
+        return [iterable]
+    # If object is numberical, convert to string and wrap as a list
+    elif isinstance(iterable, Number):
+        return [str(iterable)]
+    # If the object is iterable and not a string, convert every element to string and wratp as a list
+    else:
+        strlist = []
+        for element in iterable:
+            strlist.append(str(element))
 
     return strlist
     
\ No newline at end of file
diff --git a/schematic/visualization/tangled_tree.py b/schematic/visualization/tangled_tree.py
index 07757a14d..d5b838e85 100644
--- a/schematic/visualization/tangled_tree.py
+++ b/schematic/visualization/tangled_tree.py
@@ -688,7 +688,7 @@ def get_node_layers_json(self, topological_gen, source_nodes, child_parents, par
 
         return layers_json
 
-    def save_outputs(self, save_file, layers_json, cn='', all_layers=[]):
+    def save_outputs(self, save_file, layers_json, cn='', all_layers=None):
         '''
         Inputs:
             save_file (bool): Indicates whether to save a file locally or not.:
@@ -702,6 +702,8 @@ def save_outputs(self, save_file, layers_json, cn='', all_layers=[]):
                 If save_file == False: Each string represents contains the layers for a single tangled tree.
                 If save_file ==True: is an empty list.
         '''
+        if all_layers is None:
+            all_layers = []
         if save_file == True:
             if cn:
                 output_file_name = f"{self.schema_abbr}_{self.figure_type}_{cn}_tangled_tree.json"
diff --git a/schematic_api/api/routes.py b/schematic_api/api/routes.py
index 1e3c6dc94..4afd8897f 100644
--- a/schematic_api/api/routes.py
+++ b/schematic_api/api/routes.py
@@ -265,76 +265,8 @@ def get_manifest_route(schema_url: str, use_annotations: bool, dataset_ids=None,
                     f"When submitting 'all manifests' as the data_type cannot also submit dataset_id. "
                     f"Please check your submission and try again."
                 )
-
-    # Since this function is called in `get_manifest_route`, 
-    # it can use the access_token passed in from there and retain `access_token` as a parameter
-    def create_single_manifest(data_type, title, dataset_id=None, output_format=None, access_token=None, strict=strict_validation):
-        # create object of type ManifestGenerator
-        manifest_generator = ManifestGenerator(
-            path_to_json_ld=jsonld,
-            title=title,
-            root=data_type,
-            use_annotations=use_annotations,
-            alphabetize_valid_values = 'ascending',
-        )
-
-        # if returning a dataframe
-        if output_format:
-            if "dataframe" in output_format:
-                output_format = "dataframe"
-
-        result = manifest_generator.get_manifest(
-            dataset_id=dataset_id, sheet_url=True, output_format=output_format, access_token=access_token, strict=strict,
-        )
-
-        # return an excel file if output_format is set to "excel"
-        if output_format == "excel":
-            dir_name = os.path.dirname(result)
-            file_name = os.path.basename(result)
-            mimetype='application/vnd.openxmlformats-officedocument.spreadsheetml.sheet'
-            return send_from_directory(directory=dir_name, path=file_name, as_attachment=True, mimetype=mimetype, max_age=0)
-               
-        return result
-
-    # Gather all returned result urls
-    all_results = []
-    if data_type[0] == 'all manifests':
-        sg = SchemaGenerator(path_to_json_ld=jsonld)
-        component_digraph = sg.se.get_digraph_by_edge_type('requiresComponent')
-        components = component_digraph.nodes()
-        for component in components:
-            if title:
-                t = f'{title}.{component}.manifest'
-            else: 
-                t = f'Example.{component}.manifest'
-            if output_format != "excel":
-                result = create_single_manifest(data_type=component, output_format=output_format, title=t, access_token=access_token)
-                all_results.append(result)
-            else: 
-                app.logger.error('Currently we do not support returning multiple files as Excel format at once. Please choose a different output format. ')
-    else:
-        for i, dt in enumerate(data_type):
-            if not title: 
-                t = f'Example.{dt}.manifest'
-            else: 
-                if len(data_type) > 1:
-                    t = f'{title}.{dt}.manifest'
-                else: 
-                    t = title
-            if dataset_ids:
-                # if a dataset_id is provided add this to the function call.
-                result = create_single_manifest(data_type=dt, dataset_id=dataset_ids[i], output_format=output_format, title=t, access_token=access_token)
-            else:
-                result = create_single_manifest(data_type=dt, output_format=output_format, title=t, access_token=access_token)
-
-            # if output is pandas dataframe or google sheet url
-            if isinstance(result, str) or isinstance(result, pd.DataFrame):
-                all_results.append(result)
-            else: 
-                if len(data_type) > 1:
-                    app.logger.warning(f'Currently we do not support returning multiple files as Excel format at once. Only {t} would get returned. ')
-                return result
-
+        
+    all_results = ManifestGenerator.create_manifests(jsonld=jsonld, output_format=output_format, data_types=data_type, title=title, access_token=access_token, dataset_ids=dataset_ids, strict=strict_validation, use_annotations=use_annotations)
     return all_results
 
 #####profile validate manifest route function 


Test patch:
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 720dcfcae..809c350d4 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -25,7 +25,7 @@ concurrency:
   cancel-in-progress: true
 jobs:
   test:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04-4core-16GBRAM-150GBSSD
     env:
       POETRY_VERSION:  1.3.0
     strategy:
@@ -128,7 +128,7 @@ jobs:
         run: >
           source .venv/bin/activate;
           pytest --durations=0 --cov-report=term --cov-report=html:htmlcov --cov=schematic/
-          -m "not (google_credentials_needed or schematic_api or table_operations)"
+          -m "not (google_credentials_needed or schematic_api or table_operations)" --reruns 2 -n auto
 
       - name: Run tests
         env:
@@ -138,7 +138,7 @@ jobs:
         run: >
           source .venv/bin/activate;
           pytest --durations=0 --cov-report=term --cov-report=html:htmlcov --cov=schematic/
-          -m "not (google_credentials_needed or rule_combos or schematic_api or table_operations)"
+          -m "not (google_credentials_needed or rule_combos or schematic_api or table_operations)" --reruns 2  -n auto
 
       - name: Upload pytest test results
         uses: actions/upload-artifact@v2
diff --git a/tests/conftest.py b/tests/conftest.py
index 644675355..fa0fb421e 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -7,10 +7,12 @@
 import pytest
 import pandas as pd
 from dotenv import load_dotenv, find_dotenv
+from time import perf_counter
 
 from schematic.schemas.explorer import SchemaExplorer
 from schematic.configuration.configuration import CONFIG
 from schematic.utils.df_utils import load_df
+from schematic.store.synapse import SynapseStorage
 
 load_dotenv()
 
@@ -90,3 +92,13 @@ def helpers():
 @pytest.fixture(scope="session")
 def config():
     yield CONFIG
+
+@pytest.fixture(scope="session")
+def synapse_store(request):
+    access_token = os.getenv("SYNAPSE_ACCESS_TOKEN")
+    if access_token:
+        synapse_store = SynapseStorage(access_token=access_token)
+    else:
+        synapse_store = SynapseStorage()
+
+    yield synapse_store
diff --git a/tests/test_api.py b/tests/test_api.py
index 9d69c63b2..6cbb72448 100644
--- a/tests/test_api.py
+++ b/tests/test_api.py
@@ -881,6 +881,7 @@ def test_visualize_attributes(self, client, data_model_jsonld):
 
     @pytest.mark.parametrize("figure_type", ["component", "dependency"])
     def test_visualize_tangled_tree_layers(self, client, figure_type, data_model_jsonld):
+        # TODO: Determine a 2nd data model to use for this test, test both models sequentially, add checks for content of response
         params = {
             "schema_url": data_model_jsonld,
             "figure_type": figure_type
diff --git a/tests/test_manifest.py b/tests/test_manifest.py
index 0eb905cf1..2ea337ca7 100644
--- a/tests/test_manifest.py
+++ b/tests/test_manifest.py
@@ -133,7 +133,7 @@ def test_get_manifest_first_time(self, manifest):
         is_file_based = data_type in ["BulkRNA-seqAssay"]
 
         assert "Component" in output
-        assert is_file_based == ("eTag" in output)
+        assert is_file_based == ("entityId" in output)
         assert is_file_based == ("Filename" in output)
         assert (is_file_based and use_annotations) == ("confidence" in output)
 
@@ -159,7 +159,7 @@ def test_get_manifest_first_time(self, manifest):
         assert output.shape[0] == 3  # Number of rows
         if use_annotations:
             assert output.shape[0] == 3  # Number of rows
-            assert "eTag" in output
+            assert "entityId" in output
             assert "confidence" in output
             assert output["Year of Birth"].tolist() == ["1980", "", ""]
 
diff --git a/tests/test_store.py b/tests/test_store.py
index 8828d3fb6..8f66ade50 100644
--- a/tests/test_store.py
+++ b/tests/test_store.py
@@ -12,29 +12,18 @@
 from synapseclient import EntityViewSchema, Folder
 from synapseclient.core.exceptions import SynapseHTTPError
 from synapseclient.entity import File
-from tenacity import (RetryError, Retrying, stop_after_attempt,
-                      wait_random_exponential)
 
 from schematic.configuration.configuration import Configuration
 from schematic.models.metadata import MetadataModel
 from schematic.schemas.generator import SchemaGenerator
 from schematic.store.base import BaseStorage
-from schematic.store.synapse import (DatasetFileView, ManifestDownload,
-                                     SynapseStorage)
+from schematic.store.synapse import (DatasetFileView, 
+                                    ManifestDownload,)
 
 logging.basicConfig(level=logging.DEBUG)
 logger = logging.getLogger(__name__)
 
 
-@pytest.fixture
-def synapse_store():
-    access_token = os.getenv("SYNAPSE_ACCESS_TOKEN")
-    if access_token:
-        synapse_store = SynapseStorage(access_token=access_token)
-    else:
-        synapse_store = SynapseStorage()
-    yield synapse_store
-
 @pytest.fixture
 def test_download_manifest_id():
     yield "syn51203973"
@@ -121,6 +110,8 @@ def test_getFileAnnotations(self, synapse_store):
 
     @pytest.mark.parametrize('only_new_files',[True, False])
     def test_get_file_entityIds(self, helpers, synapse_store, only_new_files):
+        #TODO: Automatically reset manifest at path specified below after each test 
+        # so that subsequent runs do not affect each other
         manifest_path = "mock_manifests/test_BulkRNAseq.csv"
         dataset_files = synapse_store.getFilesInStorageDataset('syn39241199')
 
@@ -128,6 +119,8 @@ def test_get_file_entityIds(self, helpers, synapse_store, only_new_files):
             # Prepare manifest is getting Ids for new files only
             manifest = helpers.get_data_frame(manifest_path)
             entityIds = pd.DataFrame({'entityId': ['syn39242580', 'syn51900502']})
+
+            # If this line errors out then the changes on the manifest file need to be discarded
             manifest = manifest.join(entityIds)
             
             # get entityIds for new files
@@ -153,24 +146,15 @@ def test_annotation_submission(self, synapse_store, helpers, manifest_path, test
         # Upload dataset annotations
         sg = SchemaGenerator(config.model_location)
 
-        try:        
-            for attempt in Retrying(
-                stop = stop_after_attempt(15),
-                wait = wait_random_exponential(multiplier=1,min=10,max=120),
-                retry_error_callback = raise_final_error
-                ):
-                with attempt:         
-                    manifest_id = synapse_store.associateMetadataWithFiles(
-                        schemaGenerator = sg,
-                        metadataManifestPath = helpers.get_data_path(manifest_path),
-                        datasetId = datasetId,
-                        manifest_record_type = manifest_record_type,
-                        useSchemaLabel = True,
-                        hideBlanks = True,
-                        restrict_manifest = False,
-                    )
-        except RetryError:
-            pass
+        manifest_id = synapse_store.associateMetadataWithFiles(
+            schemaGenerator = sg,
+            metadataManifestPath = helpers.get_data_path(manifest_path),
+            datasetId = datasetId,
+            manifest_record_type = manifest_record_type,
+            useSchemaLabel = True,
+            hideBlanks = True,
+            restrict_manifest = False,
+        )
 
         # Retrive annotations
         entity_id = helpers.get_data_frame(manifest_path)["entityId"][0]
diff --git a/tests/test_utils.py b/tests/test_utils.py
index 5fa9003f3..d8f0aff46 100644
--- a/tests/test_utils.py
+++ b/tests/test_utils.py
@@ -20,7 +20,6 @@
                                   MissingConfigValueError)
 from schematic.schemas import df_parser
 from schematic.schemas.explorer import SchemaExplorer
-from schematic.store.synapse import SynapseStorage
 from schematic.utils import (cli_utils, df_utils, general, io_utils,
                              validate_utils)
 from schematic.utils.general import (calculate_datetime,
@@ -32,15 +31,6 @@
 
 IN_GITHUB_ACTIONS = os.getenv("GITHUB_ACTIONS")
 
-@pytest.fixture
-def synapse_store():
-    access_token = os.getenv("SYNAPSE_ACCESS_TOKEN")
-    if access_token:
-        synapse_store = SynapseStorage(access_token=access_token)
-    else:
-        synapse_store = SynapseStorage()
-    yield synapse_store
-
 class TestGeneral:
     def test_clear_synapse_cache(self, tmp_path):
         # define location of mock synapse cache
diff --git a/tests/test_validation.py b/tests/test_validation.py
index c1f115e26..57a1c78e6 100644
--- a/tests/test_validation.py
+++ b/tests/test_validation.py
@@ -43,6 +43,10 @@ def get_rule_combinations():
             continue
     
 class TestManifestValidation:
+    # check if suite has been created. If so, delete it
+    if os.path.exists("great_expectations/expectations/Manifest_test_suite.json"):
+        os.remove("great_expectations/expectations/Manifest_test_suite.json")
+
     def test_valid_manifest(self,helpers,metadataModel):
         manifestPath = helpers.get_data_path("mock_manifests/Valid_Test_Manifest.csv")
         rootNode = 'MockComponent'
@@ -377,12 +381,11 @@ def test_in_house_validation(self,helpers,sg,metadataModel):
             invalid_entry = ['71738', '98085', '210065'],
             sg = sg,
             )[1] in warnings 
-        
+    
 
     @pytest.mark.rule_combos(reason = 'This introduces a great number of tests covering every possible rule combination that are only necessary on occasion.')
     @pytest.mark.parametrize("base_rule, second_rule", get_rule_combinations())
-    def test_rule_combinations(self, helpers, sg, base_rule, second_rule, metadataModel):
-        #print(base_rule,second_rule)
+    def test_rule_combinations(self, helpers, sg, base_rule, second_rule, metadataModel,):
         rule_regex = re.compile(base_rule+'.*')
 
         manifestPath = helpers.get_data_path("mock_manifests/Rule_Combo_Manifest.csv")
@@ -429,7 +432,8 @@ def test_rule_combinations(self, helpers, sg, base_rule, second_rule, metadataMo
             sg = sg,
             jsonSchema = sg.get_json_schema_requirements(rootNode, rootNode + "_validation")
         )
-        
+
+
         #perform validation with no exceptions raised
         _, errors, warnings = validateManifest.validate_manifest_rules(
             manifest = manifest,