Repository: mwong009/pycmtensor (language: python)

Issue:
Update develop branch
# Description

pull updates from dependabot

## Type of change

Please delete options that are not relevant.

- [x] Bug fix (non-breaking change which fixes an issue)
- [ ] New feature (non-breaking change which adds functionality)
- [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected)
- [ ] This change requires a documentation update




Discussion / hints:

Fix patch:
diff --git a/poetry.lock b/poetry.lock
index ba22b15..ff0cf53 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,6 +1,6 @@
 [[package]]
 name = "aesara"
-version = "2.6.6"
+version = "2.7.9"
 description = "Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs."
 category = "main"
 optional = false
@@ -14,7 +14,7 @@ logical-unification = "*"
 miniKanren = "*"
 numpy = ">=1.17.0"
 scipy = ">=0.14"
-typing_extensions = "*"
+typing-extensions = "*"
 
 [[package]]
 name = "alabaster"
@@ -26,7 +26,7 @@ python-versions = "*"
 
 [[package]]
 name = "anyio"
-version = "3.5.0"
+version = "3.6.1"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 category = "dev"
 optional = true
@@ -38,15 +38,15 @@ sniffio = ">=1.1"
 
 [package.extras]
 doc = ["packaging", "sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"]
-test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "contextlib2", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"]
+test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "contextlib2", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"]
 trio = ["trio (>=0.16)"]
 
 [[package]]
 name = "appnope"
 version = "0.1.3"
 description = "Disable App Nap on macOS >= 10.9"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
@@ -64,8 +64,8 @@ test = ["coverage", "flake8", "pexpect", "wheel"]
 name = "argon2-cffi"
 version = "21.3.0"
 description = "The secure Argon2 password hashing algorithm."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [package.dependencies]
@@ -80,8 +80,8 @@ tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"]
 name = "argon2-cffi-bindings"
 version = "21.2.0"
 description = "Low-level CFFI bindings for Argon2"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [package.dependencies]
@@ -93,11 +93,11 @@ tests = ["pytest"]
 
 [[package]]
 name = "astroid"
-version = "2.11.5"
+version = "2.12.2"
 description = "An abstract syntax tree for Python with inference support."
 category = "dev"
 optional = true
-python-versions = ">=3.6.2"
+python-versions = ">=3.7.2"
 
 [package.dependencies]
 lazy-object-proxy = ">=1.4.0"
@@ -108,8 +108,8 @@ wrapt = ">=1.11,<2"
 name = "asttokens"
 version = "2.0.5"
 description = "Annotate AST trees with source code positions"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.dependencies]
@@ -120,7 +120,7 @@ test = ["astroid", "pytest"]
 
 [[package]]
 name = "atomicwrites"
-version = "1.4.0"
+version = "1.4.1"
 description = "Atomic file writes."
 category = "dev"
 optional = false
@@ -130,7 +130,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 name = "attrs"
 version = "21.4.0"
 description = "Classes Without Boilerplate"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
@@ -142,7 +142,7 @@ tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>
 
 [[package]]
 name = "babel"
-version = "2.10.1"
+version = "2.10.3"
 description = "Internationalization utilities"
 category = "dev"
 optional = true
@@ -155,16 +155,16 @@ pytz = ">=2015.7"
 name = "backcall"
 version = "0.2.0"
 description = "Specifications for callback functions passed in to an API"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
 name = "beautifulsoup4"
 version = "4.11.1"
 description = "Screen-scraping library"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6.0"
 
 [package.dependencies]
@@ -176,7 +176,7 @@ lxml = ["lxml"]
 
 [[package]]
 name = "black"
-version = "22.3.0"
+version = "22.6.0"
 description = "The uncompromising code formatter."
 category = "dev"
 optional = true
@@ -187,7 +187,7 @@ click = ">=8.0.0"
 mypy-extensions = ">=0.4.3"
 pathspec = ">=0.9.0"
 platformdirs = ">=2"
-tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
+tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""}
 typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
@@ -198,10 +198,10 @@ uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "bleach"
-version = "5.0.0"
+version = "5.0.1"
 description = "An easy safelist-based HTML-sanitizing tool."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -209,23 +209,23 @@ six = ">=1.9.0"
 webencodings = "*"
 
 [package.extras]
-css = ["tinycss2 (>=1.1.0)"]
-dev = ["pip-tools (==6.5.1)", "pytest (==7.1.1)", "flake8 (==4.0.1)", "tox (==3.24.5)", "sphinx (==4.3.2)", "twine (==4.0.0)", "wheel (==0.37.1)", "hashin (==0.17.0)", "black (==22.3.0)", "mypy (==0.942)"]
+css = ["tinycss2 (>=1.1.0,<1.2)"]
+dev = ["build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "Sphinx (==4.3.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)", "black (==22.3.0)", "mypy (==0.961)"]
 
 [[package]]
 name = "certifi"
-version = "2021.10.8"
+version = "2022.6.15"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "dev"
 optional = true
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "cffi"
-version = "1.15.0"
+version = "1.15.1"
 description = "Foreign Function Interface for Python calling C code."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.dependencies]
@@ -239,13 +239,21 @@ category = "dev"
 optional = true
 python-versions = ">=3.6.1"
 
+[[package]]
+name = "chardet"
+version = "5.0.0"
+description = "Universal encoding detector for Python 3"
+category = "dev"
+optional = true
+python-versions = ">=3.6"
+
 [[package]]
 name = "charset-normalizer"
-version = "2.0.12"
+version = "2.1.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "dev"
 optional = true
-python-versions = ">=3.5.0"
+python-versions = ">=3.6.0"
 
 [package.extras]
 unicode_backport = ["unicodedata2"]
@@ -263,15 +271,15 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
 [[package]]
 name = "colorama"
-version = "0.4.4"
+version = "0.4.5"
 description = "Cross-platform colored terminal text."
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "commitizen"
-version = "2.25.0"
+version = "2.29.2"
 description = "Python commitizen client tool"
 category = "dev"
 optional = true
@@ -279,6 +287,7 @@ python-versions = ">=3.6.2,<4.0.0"
 
 [package.dependencies]
 argcomplete = ">=1.12.1,<2.0.0"
+chardet = ">=5.0.0,<6.0.0"
 colorama = ">=0.4.1,<0.5.0"
 decli = ">=0.5.2,<0.6.0"
 jinja2 = ">=2.10.3"
@@ -302,7 +311,7 @@ logical-unification = ">=0.4.0"
 
 [[package]]
 name = "coverage"
-version = "6.4.1"
+version = "6.4.2"
 description = "Code coverage measurement for Python"
 category = "dev"
 optional = false
@@ -314,20 +323,12 @@ tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.1
 [package.extras]
 toml = ["tomli"]
 
-[[package]]
-name = "cython"
-version = "0.29.28"
-description = "The Cython compiler for writing C extensions for the Python language."
-category = "main"
-optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
-
 [[package]]
 name = "debugpy"
-version = "1.6.0"
+version = "1.6.2"
 description = "An implementation of the Debug Adapter Protocol for Python"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [[package]]
@@ -342,32 +343,32 @@ python-versions = ">=3.6"
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.5"
 
 [[package]]
 name = "defusedxml"
 version = "0.7.1"
 description = "XML bomb protection for Python stdlib modules"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "dill"
-version = "0.3.4"
+version = "0.3.5.1"
 description = "serialize all of python"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
 
 [package.extras]
 graph = ["objgraph (>=1.7.2)"]
 
 [[package]]
 name = "distlib"
-version = "0.3.4"
+version = "0.3.5"
 description = "Distribution utilities"
 category = "dev"
 optional = true
@@ -385,8 +386,8 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 name = "entrypoints"
 version = "0.4"
 description = "Discover and load entry points from installed packages."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [[package]]
@@ -403,18 +404,18 @@ multipledispatch = "*"
 
 [[package]]
 name = "executing"
-version = "0.8.3"
+version = "0.9.1"
 description = "Get the currently executing AST node of a frame, and other information"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
 name = "fastjsonschema"
-version = "2.15.3"
+version = "2.16.1"
 description = "Fastest Python implementation of JSON schema"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.extras]
@@ -422,7 +423,7 @@ devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benc
 
 [[package]]
 name = "filelock"
-version = "3.6.0"
+version = "3.7.1"
 description = "A platform independent file lock."
 category = "main"
 optional = false
@@ -467,7 +468,7 @@ docs = ["sphinx"]
 
 [[package]]
 name = "identify"
-version = "2.5.0"
+version = "2.5.2"
 description = "File identification library for Python"
 category = "dev"
 optional = true
@@ -486,7 +487,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "imagesize"
-version = "1.3.0"
+version = "1.4.1"
 description = "Getting image size from png/jpeg/jpeg2000/gif file"
 category = "dev"
 optional = true
@@ -494,7 +495,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "importlib-metadata"
-version = "4.11.3"
+version = "4.12.0"
 description = "Read metadata from Python packages"
 category = "dev"
 optional = true
@@ -506,22 +507,22 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
 perf = ["ipython"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
 
 [[package]]
 name = "importlib-resources"
-version = "5.7.1"
+version = "5.9.0"
 description = "Read resources from Python packages"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
+docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
 
 [[package]]
 name = "iniconfig"
@@ -533,10 +534,10 @@ python-versions = "*"
 
 [[package]]
 name = "ipykernel"
-version = "6.13.0"
+version = "6.15.1"
 description = "IPython Kernel for Jupyter"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -548,18 +549,19 @@ matplotlib-inline = ">=0.1"
 nest-asyncio = "*"
 packaging = "*"
 psutil = "*"
+pyzmq = ">=17"
 tornado = ">=6.1"
 traitlets = ">=5.1.0"
 
 [package.extras]
-test = ["pytest (>=6.0)", "pytest-cov", "flaky", "ipyparallel", "pre-commit", "pytest-timeout"]
+test = ["flaky", "ipyparallel", "pre-commit", "pytest-cov", "pytest-timeout", "pytest (>=6.0)"]
 
 [[package]]
 name = "ipython"
-version = "8.3.0"
+version = "8.4.0"
 description = "IPython: Productive Interactive Computing"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.8"
 
 [package.dependencies]
@@ -593,16 +595,16 @@ test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotli
 name = "ipython-genutils"
 version = "0.2.0"
 description = "Vestigial utilities from IPython"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
 name = "ipywidgets"
-version = "7.7.0"
+version = "7.7.1"
 description = "IPython HTML widgets for Jupyter"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.dependencies]
@@ -610,7 +612,6 @@ ipykernel = ">=4.5.1"
 ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""}
 ipython-genutils = ">=0.2.0,<0.3.0"
 jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""}
-nbformat = ">=4.2.0"
 traitlets = ">=4.3.1"
 widgetsnbextension = ">=3.6.0,<3.7.0"
 
@@ -635,8 +636,8 @@ plugins = ["setuptools"]
 name = "jedi"
 version = "0.18.1"
 description = "An autocompletion tool for Python that can be used for text editors."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [package.dependencies]
@@ -650,8 +651,8 @@ testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"]
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -662,10 +663,10 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "jsonschema"
-version = "4.5.1"
+version = "4.7.2"
 description = "An implementation of JSON Schema validation for Python"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -675,7 +676,7 @@ pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
-format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
 
 [[package]]
 name = "jupyter-cache"
@@ -700,10 +701,10 @@ testing = ["ipykernel", "coverage", "pytest (>=3.6,<4)", "pytest-cov", "pytest-r
 
 [[package]]
 name = "jupyter-client"
-version = "7.3.1"
+version = "7.3.4"
 description = "Jupyter protocol implementation and client libraries"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -711,20 +712,20 @@ entrypoints = "*"
 jupyter-core = ">=4.9.2"
 nest-asyncio = ">=1.5.4"
 python-dateutil = ">=2.8.2"
-pyzmq = ">=22.3"
+pyzmq = ">=23.0"
 tornado = ">=6.0"
 traitlets = "*"
 
 [package.extras]
-doc = ["ipykernel", "myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
+doc = ["ipykernel", "myst-parser", "sphinx-rtd-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt"]
 test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "jupyter-core"
-version = "4.10.0"
+version = "4.11.1"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -736,7 +737,7 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "jupyter-server"
-version = "1.17.0"
+version = "1.18.1"
 description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications."
 category = "dev"
 optional = true
@@ -765,17 +766,17 @@ test = ["coverage", "ipykernel", "pre-commit", "pytest-console-scripts", "pytest
 
 [[package]]
 name = "jupyter-server-mathjax"
-version = "0.2.5"
+version = "0.2.6"
 description = "MathJax resources as a Jupyter Server Extension."
 category = "dev"
 optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
-jupyter-server = ">=1.1,<2.0"
+jupyter-server = ">=1.1"
 
 [package.extras]
-test = ["jupyter-server", "pytest"]
+test = ["pytest", "jupyter-server"]
 
 [[package]]
 name = "jupyter-sphinx"
@@ -796,16 +797,16 @@ Sphinx = ">=2"
 name = "jupyterlab-pygments"
 version = "0.2.2"
 description = "Pygments theme using JupyterLab CSS variables"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [[package]]
 name = "jupyterlab-widgets"
-version = "1.1.0"
+version = "1.1.1"
 description = "A JupyterLab extension."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [[package]]
@@ -851,16 +852,16 @@ testing = ["coverage", "psutil", "pytest (>=3.6,<4)", "pytest-benchmark (>=3.2,<
 name = "markupsafe"
 version = "2.1.1"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [[package]]
 name = "matplotlib-inline"
 version = "0.1.3"
 description = "Inline Matplotlib backend for Jupyter"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.5"
 
 [package.dependencies]
@@ -901,8 +902,8 @@ toolz = "*"
 name = "mistune"
 version = "0.8.4"
 description = "The fastest markdown parser in pure Python"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
@@ -977,8 +978,8 @@ testing = ["beautifulsoup4", "coverage", "docutils (>=0.17.0,<0.18.0)", "pytest
 name = "nbclient"
 version = "0.5.13"
 description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7.0"
 
 [package.dependencies]
@@ -995,8 +996,8 @@ test = ["ipython (<8.0.0)", "ipykernel", "ipywidgets (<8.0.0)", "pytest (>=4.1)"
 name = "nbconvert"
 version = "6.5.0"
 description = "Converting Jupyter Notebooks"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -1051,8 +1052,8 @@ test = ["pytest (>=3.6)", "pytest-cov", "pytest-timeout", "pytest-tornado", "jup
 name = "nbformat"
 version = "5.4.0"
 description = "The Jupyter Notebook format"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -1068,24 +1069,24 @@ test = ["check-manifest", "testpath", "pytest", "pre-commit"]
 name = "nest-asyncio"
 version = "1.5.5"
 description = "Patch asyncio to allow nested event loops"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.5"
 
 [[package]]
 name = "nodeenv"
-version = "1.6.0"
+version = "1.7.0"
 description = "Node.js virtual environment builder"
 category = "dev"
 optional = true
-python-versions = "*"
+python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*"
 
 [[package]]
 name = "notebook"
 version = "6.4.12"
 description = "A web-based notebook environment for interactive computing"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
@@ -1112,7 +1113,7 @@ test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium", "pyte
 
 [[package]]
 name = "numpy"
-version = "1.22.0"
+version = "1.22.4"
 description = "NumPy is the fundamental package for array computing with Python."
 category = "main"
 optional = false
@@ -1122,7 +1123,7 @@ python-versions = ">=3.8"
 name = "packaging"
 version = "21.3"
 description = "Core utilities for Python packages"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=3.6"
 
@@ -1131,7 +1132,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
 [[package]]
 name = "pandas"
-version = "1.4.2"
+version = "1.4.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
@@ -1154,16 +1155,16 @@ test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"]
 name = "pandocfilters"
 version = "1.5.0"
 description = "Utilities for writing pandoc filters in python"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "parso"
 version = "0.8.3"
 description = "A Python Parser"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [package.extras]
@@ -1182,8 +1183,8 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 name = "pexpect"
 version = "4.8.0"
 description = "Pexpect allows easy control of interactive console applications."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.dependencies]
@@ -1193,8 +1194,8 @@ ptyprocess = ">=0.5"
 name = "pickleshare"
 version = "0.7.5"
 description = "Tiny 'shelve'-like database with concurrency support"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
@@ -1223,7 +1224,7 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "pre-commit"
-version = "2.19.0"
+version = "2.20.0"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 category = "dev"
 optional = true
@@ -1241,8 +1242,8 @@ virtualenv = ">=20.0.8"
 name = "prometheus-client"
 version = "0.14.1"
 description = "Python client for the Prometheus monitoring system."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [package.extras]
@@ -1250,10 +1251,10 @@ twisted = ["twisted"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.29"
+version = "3.0.30"
 description = "Library for building powerful interactive command lines in Python"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6.2"
 
 [package.dependencies]
@@ -1261,29 +1262,29 @@ wcwidth = "*"
 
 [[package]]
 name = "psutil"
-version = "5.9.0"
+version = "5.9.1"
 description = "Cross-platform lib for process and system monitoring in Python."
-category = "main"
-optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+category = "dev"
+optional = true
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [package.extras]
-test = ["ipaddress", "mock", "unittest2", "enum34", "pywin32", "wmi"]
+test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"]
 
 [[package]]
 name = "ptyprocess"
 version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
 name = "pure-eval"
 version = "0.2.2"
 description = "Safely evaluate AST nodes without side effects"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.extras]
@@ -1293,7 +1294,7 @@ tests = ["pytest"]
 name = "py"
 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "main"
+category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
@@ -1301,8 +1302,8 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 name = "pycparser"
 version = "2.21"
 description = "C parser in Python"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
@@ -1351,8 +1352,8 @@ pyparsing = ">=2.1.4"
 name = "pygments"
 version = "2.12.0"
 description = "Pygments is a syntax highlighting package written in Python."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [[package]]
@@ -1370,8 +1371,8 @@ diagrams = ["railroad-diagrams", "jinja2"]
 name = "pyrsistent"
 version = "0.18.1"
 description = "Persistent/Functional/Immutable data structures"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [[package]]
@@ -1433,16 +1434,16 @@ python-versions = "*"
 name = "pywin32"
 version = "304"
 description = "Python for Window Extensions"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
 name = "pywinpty"
-version = "2.0.5"
+version = "2.0.6"
 description = "Pseudo terminal support for Windows from Python."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [[package]]
@@ -1455,10 +1456,10 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "pyzmq"
-version = "22.3.0"
+version = "23.2.0"
 description = "Python bindings for 0MQ"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [package.dependencies]
@@ -1481,21 +1482,21 @@ docs = ["Sphinx (>=3.3,<4.0)", "sphinx-rtd-theme (>=0.5.0,<0.6.0)", "sphinx-auto
 
 [[package]]
 name = "requests"
-version = "2.27.1"
+version = "2.28.1"
 description = "Python HTTP for Humans."
 category = "dev"
 optional = true
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.7, <4"
 
 [package.dependencies]
 certifi = ">=2017.4.17"
-charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""}
-idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""}
+charset-normalizer = ">=2,<3"
+idna = ">=2.5,<4"
 urllib3 = ">=1.21.1,<1.27"
 
 [package.extras]
-socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
-use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
+socks = ["PySocks (>=1.5.6,!=1.5.7)"]
+use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
 name = "rstcheck"
@@ -1510,21 +1511,21 @@ docutils = ">=0.7"
 
 [[package]]
 name = "scipy"
-version = "1.7.3"
+version = "1.8.1"
 description = "SciPy: Scientific Library for Python"
 category = "main"
 optional = false
-python-versions = ">=3.7,<3.11"
+python-versions = ">=3.8,<3.11"
 
 [package.dependencies]
-numpy = ">=1.16.5,<1.23.0"
+numpy = ">=1.17.3,<1.25.0"
 
 [[package]]
 name = "send2trash"
 version = "1.8.0"
 description = "Send file to trash natively under Mac OS X, Windows and Linux."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.extras]
@@ -1568,8 +1569,8 @@ python-versions = "*"
 name = "soupsieve"
 version = "2.3.2.post1"
 description = "A modern CSS selector implementation for Beautiful Soup."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [[package]]
@@ -1606,11 +1607,11 @@ test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"]
 
 [[package]]
 name = "sphinx-autoapi"
-version = "1.8.4"
+version = "1.9.0"
 description = "Sphinx API documentation generator"
 category = "dev"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 astroid = ">=2.7"
@@ -1647,7 +1648,7 @@ testing = ["coverage", "myst-nb (>=0.13,<1.0)", "pytest (>=6.0.1,<6.1.0)", "pyte
 
 [[package]]
 name = "sphinx-togglebutton"
-version = "0.3.1"
+version = "0.3.2"
 description = "Toggle page content and collapse admonitions in Sphinx."
 category = "dev"
 optional = true
@@ -1658,7 +1659,7 @@ docutils = "*"
 sphinx = "*"
 
 [package.extras]
-sphinx = ["myst-parser", "sphinx-book-theme", "sphinx-design"]
+sphinx = ["sphinx-examples", "sphinx-design", "sphinx-book-theme", "myst-nb", "numpy", "matplotlib"]
 
 [[package]]
 name = "sphinxcontrib-applehelp"
@@ -1733,7 +1734,7 @@ test = ["pytest"]
 
 [[package]]
 name = "sqlalchemy"
-version = "1.4.36"
+version = "1.4.39"
 description = "Database Abstraction Library"
 category = "dev"
 optional = true
@@ -1757,7 +1758,7 @@ mysql_connector = ["mysql-connector-python"]
 oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"]
 postgresql = ["psycopg2 (>=2.7)"]
 postgresql_asyncpg = ["greenlet (!=0.4.17)", "asyncpg"]
-postgresql_pg8000 = ["pg8000 (>=1.16.6)"]
+postgresql_pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"]
 postgresql_psycopg2binary = ["psycopg2-binary"]
 postgresql_psycopg2cffi = ["psycopg2cffi"]
 pymysql = ["pymysql (<1)", "pymysql"]
@@ -1765,10 +1766,10 @@ sqlcipher = ["sqlcipher3-binary"]
 
 [[package]]
 name = "stack-data"
-version = "0.2.0"
+version = "0.3.0"
 description = "Extract data from python stack frames and tracebacks for informative displays"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.dependencies]
@@ -1777,7 +1778,7 @@ executing = "*"
 pure-eval = "*"
 
 [package.extras]
-tests = ["pytest", "typeguard", "pygments", "littleutils", "cython"]
+tests = ["cython", "littleutils", "pygments", "typeguard", "pytest"]
 
 [[package]]
 name = "termcolor"
@@ -1789,26 +1790,26 @@ python-versions = "*"
 
 [[package]]
 name = "terminado"
-version = "0.13.3"
+version = "0.15.0"
 description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
 ptyprocess = {version = "*", markers = "os_name != \"nt\""}
 pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""}
-tornado = ">=4"
+tornado = ">=6.1.0"
 
 [package.extras]
-test = ["pytest"]
+test = ["pre-commit", "pytest-timeout", "pytest (>=6.0)"]
 
 [[package]]
 name = "tinycss2"
 version = "1.1.1"
 description = "A tiny CSS parser"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.6"
 
 [package.dependencies]
@@ -1836,7 +1837,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "tomlkit"
-version = "0.10.2"
+version = "0.11.1"
 description = "Style preserving TOML library"
 category = "dev"
 optional = true
@@ -1844,7 +1845,7 @@ python-versions = ">=3.6,<4.0"
 
 [[package]]
 name = "toolz"
-version = "0.11.2"
+version = "0.12.0"
 description = "List processing tools and functional utilities"
 category = "main"
 optional = false
@@ -1852,43 +1853,26 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "tornado"
-version = "6.1"
+version = "6.2"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
-category = "main"
-optional = false
-python-versions = ">= 3.5"
-
-[[package]]
-name = "tqdm"
-version = "4.64.0"
-description = "Fast, Extensible Progress Meter"
-category = "main"
-optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
-
-[package.dependencies]
-colorama = {version = "*", markers = "platform_system == \"Windows\""}
-
-[package.extras]
-dev = ["py-make (>=0.1.0)", "twine", "wheel"]
-notebook = ["ipywidgets (>=6)"]
-slack = ["slack-sdk"]
-telegram = ["requests"]
+category = "dev"
+optional = true
+python-versions = ">= 3.7"
 
 [[package]]
 name = "traitlets"
-version = "5.2.0"
-description = "Traitlets Python configuration system"
-category = "main"
-optional = false
+version = "5.3.0"
+description = ""
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.extras]
-test = ["pytest", "pre-commit"]
+test = ["pre-commit", "pytest"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.2.0"
+version = "4.3.0"
 description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "main"
 optional = false
@@ -1904,11 +1888,11 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "urllib3"
-version = "1.26.9"
+version = "1.26.11"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "dev"
 optional = true
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4"
 
 [package.extras]
 brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"]
@@ -1917,41 +1901,40 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.14.1"
+version = "20.16.1"
 description = "Virtual Python Environment builder"
 category = "dev"
 optional = true
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
+python-versions = ">=3.6"
 
 [package.dependencies]
 distlib = ">=0.3.1,<1"
 filelock = ">=3.2,<4"
 platformdirs = ">=2,<3"
-six = ">=1.9.0,<2"
 
 [package.extras]
 docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=21.3)"]
-testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)"]
+testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "packaging (>=20.0)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)"]
 
 [[package]]
 name = "wcwidth"
 version = "0.2.5"
 description = "Measures the displayed width of unicode strings in a terminal"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
 name = "webencodings"
 version = "0.5.1"
 description = "Character encoding aliases for legacy web content"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [[package]]
 name = "websocket-client"
-version = "1.3.2"
+version = "1.3.3"
 description = "WebSocket client for Python with low level API options"
 category = "dev"
 optional = true
@@ -1964,10 +1947,10 @@ test = ["websockets"]
 
 [[package]]
 name = "widgetsnbextension"
-version = "3.6.0"
+version = "3.6.1"
 description = "IPython HTML widgets for Jupyter"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = "*"
 
 [package.dependencies]
@@ -1983,15 +1966,15 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [[package]]
 name = "zipp"
-version = "3.8.0"
+version = "3.8.1"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
-optional = false
+category = "dev"
+optional = true
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
+docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
 
 [extras]
 docs = []
@@ -2001,20 +1984,15 @@ tool = []
 [metadata]
 lock-version = "1.1"
 python-versions = ">=3.8,<=3.10"
-content-hash = "808adfd335846d37653cbb842e1bc2dc3579b263c931d29f6fc64ceadcf4c767"
+content-hash = "55c7bb23e157795feb06f3e67c865b788e5999803691a251cbbd32e69983bd14"
 
 [metadata.files]
-aesara = [
-    {file = "aesara-2.6.6.tar.gz", hash = "sha256:c02ed45bf8f7d4d1caac7ffc2d20b530dd1f26dbedbd435ac7672446e26d1950"},
-]
+aesara = []
 alabaster = [
     {file = "alabaster-0.7.12-py2.py3-none-any.whl", hash = "sha256:446438bdcca0e05bd45ea2de1668c1d9b032e1a9154c2c259092d77031ddd359"},
     {file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"},
 ]
-anyio = [
-    {file = "anyio-3.5.0-py3-none-any.whl", hash = "sha256:b5fa16c5ff93fa1046f2eeb5bbff2dad4d3514d6cda61d02816dba34fa8c3c2e"},
-    {file = "anyio-3.5.0.tar.gz", hash = "sha256:a0aeffe2fb1fdf374a8e4b471444f0f3ac4fb9f5a5b542b48824475e0042a5a6"},
-]
+anyio = []
 appnope = [
     {file = "appnope-0.1.3-py2.py3-none-any.whl", hash = "sha256:265a455292d0bd8a72453494fa24df5a11eb18373a60c7c0430889f22548605e"},
     {file = "appnope-0.1.3.tar.gz", hash = "sha256:02bd91c4de869fbb1e1c50aafc4098827a7a54ab2f39d9dcba6c9547ed920e24"},
@@ -2050,26 +2028,17 @@ argon2-cffi-bindings = [
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 ]
-urllib3 = [
-    {file = "urllib3-1.26.9-py2.py3-none-any.whl", hash = "sha256:44ece4d53fb1706f667c9bd1c648f5469a2ec925fcf3a776667042d645472c14"},
-    {file = "urllib3-1.26.9.tar.gz", hash = "sha256:aabaf16477806a5e1dd19aa41f8c2b7950dd3c746362d7e3223dbe6de6ac448e"},
-]
-virtualenv = [
-    {file = "virtualenv-20.14.1-py2.py3-none-any.whl", hash = "sha256:e617f16e25b42eb4f6e74096b9c9e37713cf10bf30168fb4a739f3fa8f898a3a"},
-    {file = "virtualenv-20.14.1.tar.gz", hash = "sha256:ef589a79795589aada0c1c5b319486797c03b67ac3984c48c669c0e4f50df3a5"},
-]
+urllib3 = []
+virtualenv = []
 wcwidth = [
     {file = "wcwidth-0.2.5-py2.py3-none-any.whl", hash = "sha256:beb4802a9cebb9144e99086eff703a642a13d6a0052920003a230f3294bbe784"},
     {file = "wcwidth-0.2.5.tar.gz", hash = "sha256:c4d647b99872929fdb7bdcaa4fbe7f01413ed3d98077df798530e5b04f116c83"},
@@ -3189,14 +2626,8 @@ webencodings = [
     {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"},
     {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"},
 ]
-websocket-client = [
-    {file = "websocket-client-1.3.2.tar.gz", hash = "sha256:50b21db0058f7a953d67cc0445be4b948d7fc196ecbeb8083d68d94628e4abf6"},
-    {file = "websocket_client-1.3.2-py3-none-any.whl", hash = "sha256:722b171be00f2b90e1d4fb2f2b53146a536ca38db1da8ff49c972a4e1365d0ef"},
-]
-widgetsnbextension = [
-    {file = "widgetsnbextension-3.6.0-py2.py3-none-any.whl", hash = "sha256:4fd321cad39fdcf8a8e248a657202d42917ada8e8ed5dd3f60f073e0d54ceabd"},
-    {file = "widgetsnbextension-3.6.0.tar.gz", hash = "sha256:e84a7a9fcb9baf3d57106e184a7389a8f8eb935bf741a5eb9d60aa18cc029a80"},
-]
+websocket-client = []
+widgetsnbextension = []
 wrapt = [
     {file = "wrapt-1.14.1-cp27-cp27m-macosx_10_9_x86_64.whl", hash = "sha256:1b376b3f4896e7930f1f772ac4b064ac12598d1c38d04907e696cc4d794b43d3"},
     {file = "wrapt-1.14.1-cp27-cp27m-manylinux1_i686.whl", hash = "sha256:903500616422a40a98a5a3c4ff4ed9d0066f3b4c951fa286018ecdf0750194ef"},
@@ -3263,7 +2694,4 @@ wrapt = [
     {file = "wrapt-1.14.1-cp39-cp39-win_amd64.whl", hash = "sha256:dee60e1de1898bde3b238f18340eec6148986da0455d8ba7848d50470a7a32fb"},
     {file = "wrapt-1.14.1.tar.gz", hash = "sha256:380a85cf89e0e69b7cfbe2ea9f765f004ff419f34194018a6827ac0e3edfed4d"},
 ]
-zipp = [
-    {file = "zipp-3.8.0-py3-none-any.whl", hash = "sha256:c4f6e5bbf48e74f7a38e7cc5b0480ff42b0ae5178957d564d18932525d5cf099"},
-    {file = "zipp-3.8.0.tar.gz", hash = "sha256:56bf8aadb83c24db6c4b577e13de374ccfb67da2078beba1d037c17980bf43ad"},
-]
+zipp = []
diff --git a/pycmtensor/logger.py b/pycmtensor/logger.py
index 6cb40f0..080874c 100644
--- a/pycmtensor/logger.py
+++ b/pycmtensor/logger.py
@@ -2,7 +2,7 @@
 
 import logging
 
-VERBOSITY_DEFAULT = logging.WARNING
+VERBOSITY_DEFAULT = logging.INFO
 
 DEBUG = logging.DEBUG
 INFO = logging.INFO
@@ -45,20 +45,6 @@ def get_default_logger(name, level):
     return logger
 
 
-def get_debug_logger(name="debug", level=DEBUG):
-    logger = logging.getLogger(name)
-    handler = logging.StreamHandler()
-    handler.setFormatter(
-        logging.Formatter(
-            "{message:s}",
-            style="{",
-        )
-    )
-    logger.addHandler(handler)
-    logger.setLevel(level)
-    return logger
-
-
 default_formatter = logging.Formatter(
     "[{asctime:s}] {levelname:s}: {message:s}",
     style="{",
diff --git a/pycmtensor/pycmtensor.py b/pycmtensor/pycmtensor.py
index 237763a..16758ec 100644
--- a/pycmtensor/pycmtensor.py
+++ b/pycmtensor/pycmtensor.py
@@ -15,7 +15,7 @@
 from .models import PyCMTensorModel
 from .scheduler import CyclicLR
 from .trackers import IterationTracker
-from .utils import save_to_pickle, tqdm_nb_check
+from .utils import save_to_pickle
 
 
 def build_functions(model, db, optimizer=None):
@@ -187,11 +187,12 @@ def train(model, database, optimizer, save_model=False, **kwargs):
     """
 
     # [train-start]
-    # pre-run routine
+
+    # pre-run routine #
     inspect_model(model)
     build_functions(model, database, optimizer)
 
-    # load kwargs into model.config()
+    # load kwargs into model.config() #
     for key, val in kwargs.items():
         if key in model.config():
             if type(val) != type(model.config[key]):
@@ -205,15 +206,7 @@ def train(model, database, optimizer, save_model=False, **kwargs):
                 + "Valid options are: {model.config}"
             )
 
-    # debug mode runs the training at the bare minimum,
-    # i.e. without progress bars etc.
-    vb = model.config["verbosity"]
-    debug = model.config["debug"]
-    if debug is True:
-        debug_log = log.get_debug_logger()
-        log.info("Debug mode is on.")
-
-    # load learning rate scheduler
+    # load learning rate scheduler #
     if model.config["learning_scheduler"] in schlr.__dict__:
         Scheduler = getattr(schlr, model.config["learning_scheduler"])
     else:
@@ -221,7 +214,7 @@ def train(model, database, optimizer, save_model=False, **kwargs):
             f"Invalid option for learning_scheduler: {model.config['learning_scheduler']}"
         )
 
-    # create learning rate scheduler
+    # create learning rate scheduler #
     scheduler_kwargs = {"base_lr": model.config["base_lr"]}
     if Scheduler == CyclicLR:
         scheduler_kwargs.update(
@@ -233,7 +226,7 @@ def train(model, database, optimizer, save_model=False, **kwargs):
         )
     lr_scheduler = Scheduler(**scheduler_kwargs)
 
-    # training hyperparameters
+    # model training hyperparameters #
     batch_size = model.config["batch_size"]
     patience = model.config["patience"]
     patience_increase = model.config["patience_increase"]
@@ -246,44 +239,25 @@ def train(model, database, optimizer, save_model=False, **kwargs):
         patience = max_iter  # clamp patience to maximum iterations
     validation_frequency = min(n_batches, patience / 2)
 
-    # flags
-    done_looping = False
-    early_stopping = False
-
-    # set inital model solutions
+    # set inital model solutions #
     model.null_ll = model.loglikelihood()
     model.best_ll_score = 1 - model.output_errors()
     model.best_ll = model.null_ll
     best_model = model
 
+    # verbosity #
+    vb = model.config["verbosity"]
+    debug = model.config["debug"]
     log.info(f"Training model...")
-    if debug is False:
-        print(
-            f"dataset: {database.name} (n={n_samples})\n"
-            + f"batch size: {batch_size}\n"
-            + f"iterations per epoch: {n_batches}"
-        )
-
-    # disables tqdm if debug is True
-    if debug is False:
-        tqdm = tqdm_nb_check(model.config["notebook"])
-        pbar0 = tqdm(
-            bar_format=(
-                "Loglikelihood:  {postfix[0][ll]:.3f}  Score: {postfix[1][sc]:.3f}"
-            ),
-            postfix=[{"ll": model.null_ll}, {"sc": model.best_ll_score}],
-            position=0,
-            leave=True,
-        )
-        pbar = tqdm(
-            total=max_iter,
-            desc="Epoch {0:4d}/{1}".format(0, max_iter),
-            unit_scale=True,
-            position=1,
-            leave=True,
-        )
+    print(
+        f"dataset: {database.name} (n={n_samples})\n"
+        + f"batch size: {batch_size}\n"
+        + f"iterations per epoch: {n_batches}"
+    )
 
-    # training state and tracker
+    # training states and trackers #
+    done_looping = False
+    early_stopping = False
     epoch = 0
     iter = 0
     last_logged = 0
@@ -292,7 +266,7 @@ def train(model, database, optimizer, save_model=False, **kwargs):
     rng = np.random.default_rng(model.config["seed"])
     start_time = timeit.default_timer()
 
-    # training run step
+    # training run loop #
     while (epoch < max_epoch) and (not done_looping):
 
         epoch = epoch + 1  # increment epoch
@@ -303,10 +277,10 @@ def train(model, database, optimizer, save_model=False, **kwargs):
             i = rng.integers(0, n_batches)  # select random index and shift slices
             shift = rng.integers(0, batch_size)
 
-            # train model
+            # train model step #
             model.loglikelihood_estimation(i, batch_size, shift, epoch_lr)
 
-            # validation step, validate every `validation_frequency`
+            # validation step, validate every `validation_frequency` #
             if iter % validation_frequency == 0:
                 ll = model.loglikelihood()  # record the loglikelihood
                 ll_score = 1 - model.output_errors()  # record the score
@@ -317,37 +291,25 @@ def train(model, database, optimizer, save_model=False, **kwargs):
                 tracker.add(track_index, "lr", epoch_lr)
                 track_index += 1
 
-                # update the best model
+                # update the best model #
                 if ll > model.best_ll:
                     if debug and (epoch > (last_logged + 10)):
-                        if vb == "high":
-                            debug_log.debug(
-                                f"{epoch:4} log likelihood {ll:.2f} | score {ll_score:.2f} | learning rate {epoch_lr:.2e}"
-                            )
+                        log.info(
+                            f"{epoch:4} log likelihood {ll:.2f} | score {ll_score:.2f} | learning rate {epoch_lr:.2e}"
+                        )
                         last_logged = epoch
                     if ll > (model.best_ll / validation_threshold):
                         patience = min(
                             max(patience, iter * patience_increase), max_iter
                         )
 
+                    # record training statistics #
                     model.best_epoch = epoch
                     model.best_ll = ll
                     model.best_ll_score = ll_score
 
-                    # update tqdm if not in debug mode
-                    if debug is False:
-                        pbar0.postfix[0]["ll"] = model.best_ll
-                        pbar0.postfix[1]["sc"] = model.best_ll_score
-                        pbar0.update()
-
                     best_model = model
 
-            # update tqdm if debug is False
-            if debug is False:
-                pbar.set_description("Epoch {0:4d}/{1}".format(epoch, max_epoch))
-                pbar.set_postfix({"Patience": f"{iter / patience * 100:.0f}%"})
-                pbar.update()
-
             if patience <= iter:
                 done_looping = True
                 early_stopping = True
@@ -355,7 +317,7 @@ def train(model, database, optimizer, save_model=False, **kwargs):
 
             iter += 1  # increment iteration
 
-    # end of training step
+    # end of training sequence #
     end_time = timeit.default_timer()
     best_model.train_time = end_time - start_time
     best_model.epochs_per_sec = round(epoch / model.train_time, 3)
@@ -368,22 +330,10 @@ def train(model, database, optimizer, save_model=False, **kwargs):
 
     if early_stopping:
         log.warning("Maximum patience reached. Early stopping...")
-    if vb == "high":
-        print(
-            (
-                "Optimization complete with accuracy of {0:6.3f}%."
-                " Max loglikelihood reached @ epoch {1}.\n"
-            ).format(best_model.best_ll_score * 100.0, best_model.best_epoch)
-        )
-
-    # update tqdm if debug is False
-    if best_model.config["debug"] is False:
-        pbar0.close()
-        pbar.close()
 
-    if debug:
-        for h in list(debug_log.handlers):
-            debug_log.removeHandler(h)
+    score = best_model.best_ll_score * 100.0
+    print(f"Optimization complete with accuracy of {score:.3f}%.")
+    print(f"Max log likelihood reached @ epoch {best_model.best_epoch}.")
 
     return best_model
     # [train-end]
diff --git a/pycmtensor/utils.py b/pycmtensor/utils.py
index ce33b1a..3909b68 100644
--- a/pycmtensor/utils.py
+++ b/pycmtensor/utils.py
@@ -2,25 +2,6 @@
 """Collection of useful functions and methods"""
 
 
-def tqdm_nb_check(notebook: bool):
-    """Check if `__main__` is running from a notebook or not.
-
-    Args:
-        notebook (book): Boolean flag from `train{}` if program is running in a Jupyter Notebook.
-
-    Returns:
-        `tqdm`: Returns the tqdm module if not running in a notebook, else returns a tqdm.notebook module.
-    """
-    if not isinstance(notebook, bool):
-        raise TypeError(f"{notebook} is not a {bool.__name__} type")
-    if notebook:
-        from tqdm.notebook import tqdm
-    else:
-        from tqdm import tqdm
-
-    return tqdm
-
-
 def save_to_pickle(model):
     import dill as pickle
 
diff --git a/pyproject.toml b/pyproject.toml
index 932d005..c66765b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -27,15 +27,11 @@ classifiers = [
 
 [tool.poetry.dependencies]
 python = ">=3.8,<=3.10"
-numpy = ">=1.19.0,<1.23.0"
-scipy = ">=1.7.1,<1.8.0"
 aesara = "^2.4.0"
+numpy = ">=1.19.0,<1.23.0"
+scipy = "^1.7.1"
 dill = "^0.3.4"
 pandas = "^1.3.5"
-Cython = "^0.29.28"
-tqdm = "^4.62.3"
-ipykernel = "^6.9.1"
-ipywidgets = "^7.6.5"
 pydot = "^1.4.2"
 
 [tool.poetry.dev-dependencies]


Test patch:
diff --git a/tests/test_logger.py b/tests/test_logger.py
index 9f48daa..f72c0f9 100644
--- a/tests/test_logger.py
+++ b/tests/test_logger.py
@@ -6,8 +6,3 @@
 def test_default_logger():
     log.info("this is an info")
     log.set_level(log.CRITICAL)
-
-
-def test_debug_logger():
-    debug_logger = log.get_debug_logger()
-    debug_logger.info("this is an info")
diff --git a/tests/test_results.py b/tests/test_results.py
index ae12243..6baa7d1 100644
--- a/tests/test_results.py
+++ b/tests/test_results.py
@@ -35,17 +35,17 @@ def test_time_format():
     assert fmt == "00:18:02"
 
 
-def test_Results(test_db):
-    with open("tests/model.pkl", "rb") as f:
-        model = pickle.load(f)
+# def test_Results(test_db):
+#     with open("tests/model.pkl", "rb") as f:
+#         model = pickle.load(f)
 
-    r = Results(model, test_db)
-    print(r)
-    assert r.n_params == 4
+#     r = Results(model, test_db)
+#     print(r)
+#     assert r.n_params == 4
 
-    r.print_beta_statistics()
-    r.print_correlation_matrix()
-    assert r.print_nn_weights() == None
+#     r.print_beta_statistics()
+#     r.print_correlation_matrix()
+#     assert r.print_nn_weights() == None
 
 
 # def test_Predict(test_db):
diff --git a/tests/test_utils.py b/tests/test_utils.py
deleted file mode 100644
index 7ed631a..0000000
--- a/tests/test_utils.py
+++ /dev/null
@@ -1,21 +0,0 @@
-import pytest
-from tqdm import tqdm
-from tqdm.notebook import tqdm as tqdm_nb
-
-from pycmtensor.utils import tqdm_nb_check
-
-
-def test_nb_check():
-    notebook = True
-    pbar = tqdm_nb_check(notebook)
-    assert pbar == tqdm_nb
-
-    notebook = False
-    pbar = tqdm_nb_check(notebook)
-    assert pbar == tqdm
-
-
-def test_nb_check_exception():
-    with pytest.raises(Exception) as excinfo:
-        tqdm_nb_check(123)
-    assert str(excinfo.value) == "123 is not a bool type"