Repository: elifesciences/elife-tools (language: python)

Issue:
Move test scenarios folder
Re issue https://github.com/elifesciences/issues/issues/4215
Re issue https://github.com/elifesciences/elife-tools/issues/311

Moving the `tests` folder to be outside of the `elifetools` folder. The fixture files, sample xml, test related scripts and helper modules are moved too.

Test cases are modified to run from the new folder, which are working locally, and this PR should check if the test pipeline is also successful.

Since the `tests` folder was formerly inside the main library folder, I set this as a new minor version, `0.9.0`, just in case any other system depended on the test helpers or sample XML.


Discussion / hints:

Fix patch:
diff --git a/.coveragerc b/.coveragerc
index 9e2e413c..382f48dd 100644
--- a/.coveragerc
+++ b/.coveragerc
@@ -3,6 +3,6 @@ omit =
     */virtualenv/*
     */venv/*
     */.tox/*
-    */elifetools/tests/fixtures/*
+    */tests/fixtures/*
 exclude_lines =
     if __name__ == .__main__.:
diff --git a/README.rst b/README.rst
index 623bebd9..6c61f955 100644
--- a/README.rst
+++ b/README.rst
@@ -63,7 +63,7 @@ Example usage
 .. code-block:: python
 
     >>> from elifetools import parseJATS as parser
-    >>> soup = parser.parse_document('sample-xml/elife-kitchen-sink.xml')
+    >>> soup = parser.parse_document('tests/sample-xml/elife-kitchen-sink.xml')
     >>> print(parser.doi(soup))
 
 More code examples can be found in `tests/basic_usage_test.py`
@@ -76,13 +76,13 @@ You can run the full automated test suite from the base folder with:
 
 .. code-block:: bash
 
-    $ python -m unittest discover elifetools/tests
+    $ python -m unittest discover tests
 
 or you can run tests with coverage:
 
 .. code-block:: bash
 
-    $ coverage run -m unittest discover elifetools/tests
+    $ coverage run -m unittest discover tests
 
 and then view the coverage report:
 
diff --git a/elifetools/__init__.py b/elifetools/__init__.py
index 777f190d..3e2f46a3 100644
--- a/elifetools/__init__.py
+++ b/elifetools/__init__.py
@@ -1,1 +1,1 @@
-__version__ = "0.8.0"
+__version__ = "0.9.0"
diff --git a/tox.ini b/tox.ini
index 8d59ebdc..2978ba63 100644
--- a/tox.ini
+++ b/tox.ini
@@ -3,4 +3,4 @@ skipsdist = True
 envlist = py3
 [testenv]
 deps = -rrequirements.txt
-commands = coverage run -m unittest discover elifetools/tests
+commands = coverage run -m unittest discover tests


Test patch:
diff --git a/pytest.ini b/pytest.ini
index 5681411a..1b6aa55d 100644
--- a/pytest.ini
+++ b/pytest.ini
@@ -1,2 +1,2 @@
 [pytest]
-testpaths=elifetools/tests
+testpaths=tests
diff --git a/elifetools/tests/JSON/elife-00666/abstract.json b/tests/JSON/elife-00666/abstract.json
similarity index 100%
rename from elifetools/tests/JSON/elife-00666/abstract.json
rename to tests/JSON/elife-00666/abstract.json
diff --git a/elifetools/tests/JSON/elife-00666/abstracts.json b/tests/JSON/elife-00666/abstracts.json
similarity index 100%
rename from elifetools/tests/JSON/elife-00666/abstracts.json
rename to tests/JSON/elife-00666/abstracts.json
diff --git a/elifetools/tests/JSON/elife-00666/accepted_date_date.json b/tests/JSON/elife-00666/accepted_date_date.json
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rename from elifetools/tests/JSON/elife-00666/accepted_date_date.json
rename to tests/JSON/elife-00666/accepted_date_date.json
diff --git a/elifetools/tests/JSON/elife-00666/accepted_date_day.json b/tests/JSON/elife-00666/accepted_date_day.json
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rename from elifetools/tests/JSON/elife-00666/accepted_date_day.json
rename to tests/JSON/elife-00666/accepted_date_day.json
diff --git a/elifetools/tests/JSON/elife-00666/accepted_date_month.json b/tests/JSON/elife-00666/accepted_date_month.json
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rename from elifetools/tests/JSON/elife-00666/accepted_date_month.json
rename to tests/JSON/elife-00666/accepted_date_month.json
diff --git a/elifetools/tests/JSON/elife-00666/accepted_date_timestamp.json b/tests/JSON/elife-00666/accepted_date_timestamp.json
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rename from elifetools/tests/JSON/elife-00666/accepted_date_timestamp.json
rename to tests/JSON/elife-00666/accepted_date_timestamp.json
diff --git a/elifetools/tests/JSON/elife-00666/accepted_date_year.json b/tests/JSON/elife-00666/accepted_date_year.json
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rename from elifetools/tests/JSON/elife-00666/accepted_date_year.json
rename to tests/JSON/elife-00666/accepted_date_year.json
diff --git a/elifetools/tests/JSON/elife-00666/ack.json b/tests/JSON/elife-00666/ack.json
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rename from elifetools/tests/JSON/elife-00666/ack.json
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diff --git a/elifetools/tests/JSON/elife-00666/acknowledgements.json b/tests/JSON/elife-00666/acknowledgements.json
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rename from elifetools/tests/JSON/elife-00666/acknowledgements.json
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diff --git a/elifetools/tests/JSON/elife-00666/article_type.json b/tests/JSON/elife-00666/article_type.json
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diff --git a/elifetools/tests/JSON/elife-00666/author_contributions.json b/tests/JSON/elife-00666/author_contributions.json
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diff --git a/elifetools/tests/JSON/elife-00666/author_notes.json b/tests/JSON/elife-00666/author_notes.json
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diff --git a/elifetools/tests/JSON/elife-00666/component_doi.json b/tests/JSON/elife-00666/component_doi.json
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diff --git a/elifetools/tests/JSON/elife07586/subject_area.json b/tests/JSON/elife07586/subject_area.json
similarity index 100%
rename from elifetools/tests/JSON/elife07586/subject_area.json
rename to tests/JSON/elife07586/subject_area.json
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similarity index 100%
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rename from elifetools/tests/JSON/elife_poa_e06828/full_affiliation.json
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similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/full_correspondence.json
rename to tests/JSON/elife_poa_e06828/full_correspondence.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/full_keyword_groups.json b/tests/JSON/elife_poa_e06828/full_keyword_groups.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/full_keyword_groups.json
rename to tests/JSON/elife_poa_e06828/full_keyword_groups.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/full_keywords.json b/tests/JSON/elife_poa_e06828/full_keywords.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/full_keywords.json
rename to tests/JSON/elife_poa_e06828/full_keywords.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/full_license.json b/tests/JSON/elife_poa_e06828/full_license.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/full_license.json
rename to tests/JSON/elife_poa_e06828/full_license.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/full_research_organism.json b/tests/JSON/elife_poa_e06828/full_research_organism.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/full_research_organism.json
rename to tests/JSON/elife_poa_e06828/full_research_organism.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/full_subject_area.json b/tests/JSON/elife_poa_e06828/full_subject_area.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/full_subject_area.json
rename to tests/JSON/elife_poa_e06828/full_subject_area.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/full_title.json b/tests/JSON/elife_poa_e06828/full_title.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/full_title.json
rename to tests/JSON/elife_poa_e06828/full_title.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/graphics.json b/tests/JSON/elife_poa_e06828/graphics.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/graphics.json
rename to tests/JSON/elife_poa_e06828/graphics.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/impact_statement.json b/tests/JSON/elife_poa_e06828/impact_statement.json
similarity index 100%
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/is_poa.json b/tests/JSON/elife_poa_e06828/is_poa.json
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/journal_id.json b/tests/JSON/elife_poa_e06828/journal_id.json
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rename to tests/JSON/elife_poa_e06828/journal_id.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/journal_issn.json b/tests/JSON/elife_poa_e06828/journal_issn.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/journal_issn.json
rename to tests/JSON/elife_poa_e06828/journal_issn.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/journal_title.json b/tests/JSON/elife_poa_e06828/journal_title.json
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/keywords.json b/tests/JSON/elife_poa_e06828/keywords.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/keywords.json
rename to tests/JSON/elife_poa_e06828/keywords.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/license.json b/tests/JSON/elife_poa_e06828/license.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/license.json
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/license_url.json b/tests/JSON/elife_poa_e06828/license_url.json
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/media.json b/tests/JSON/elife_poa_e06828/media.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/media.json
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/publisher.json b/tests/JSON/elife_poa_e06828/publisher.json
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similarity index 100%
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/received_date_date.json b/tests/JSON/elife_poa_e06828/received_date_date.json
similarity index 100%
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/received_date_day.json b/tests/JSON/elife_poa_e06828/received_date_day.json
similarity index 100%
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rename to tests/JSON/elife_poa_e06828/received_date_day.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/received_date_month.json b/tests/JSON/elife_poa_e06828/received_date_month.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/received_date_month.json
rename to tests/JSON/elife_poa_e06828/received_date_month.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/received_date_timestamp.json b/tests/JSON/elife_poa_e06828/received_date_timestamp.json
similarity index 100%
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/received_date_year.json b/tests/JSON/elife_poa_e06828/received_date_year.json
similarity index 100%
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/refs.json b/tests/JSON/elife_poa_e06828/refs.json
similarity index 100%
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/related_article.json b/tests/JSON/elife_poa_e06828/related_article.json
similarity index 100%
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/related_object_ids.json b/tests/JSON/elife_poa_e06828/related_object_ids.json
similarity index 100%
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diff --git a/elifetools/tests/JSON/elife_poa_e06828/research_organism.json b/tests/JSON/elife_poa_e06828/research_organism.json
similarity index 100%
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rename to tests/JSON/elife_poa_e06828/research_organism.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/self_uri.json b/tests/JSON/elife_poa_e06828/self_uri.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/self_uri.json
rename to tests/JSON/elife_poa_e06828/self_uri.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/subject_area.json b/tests/JSON/elife_poa_e06828/subject_area.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/subject_area.json
rename to tests/JSON/elife_poa_e06828/subject_area.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/supplementary_material.json b/tests/JSON/elife_poa_e06828/supplementary_material.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/supplementary_material.json
rename to tests/JSON/elife_poa_e06828/supplementary_material.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/title.json b/tests/JSON/elife_poa_e06828/title.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/title.json
rename to tests/JSON/elife_poa_e06828/title.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/title_short.json b/tests/JSON/elife_poa_e06828/title_short.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/title_short.json
rename to tests/JSON/elife_poa_e06828/title_short.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/title_slug.json b/tests/JSON/elife_poa_e06828/title_slug.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/title_slug.json
rename to tests/JSON/elife_poa_e06828/title_slug.json
diff --git a/elifetools/tests/JSON/elife_poa_e06828/ymd.json b/tests/JSON/elife_poa_e06828/ymd.json
similarity index 100%
rename from elifetools/tests/JSON/elife_poa_e06828/ymd.json
rename to tests/JSON/elife_poa_e06828/ymd.json
diff --git a/elifetools/tests/__init__.py b/tests/__init__.py
similarity index 100%
rename from elifetools/tests/__init__.py
rename to tests/__init__.py
diff --git a/elifetools/tests/basic_usage_test.py b/tests/basic_usage_test.py
similarity index 96%
rename from elifetools/tests/basic_usage_test.py
rename to tests/basic_usage_test.py
index cb097f1c..229dd51c 100644
--- a/elifetools/tests/basic_usage_test.py
+++ b/tests/basic_usage_test.py
@@ -1,7 +1,7 @@
 import os
 import unittest
 import elifetools.parseJATS as parser
-from elifetools.file_utils import sample_xml
+from tests.file_utils import sample_xml
 
 """ Basic code usage for the elifetools library.
 
diff --git a/elifetools/file_utils/__init__.py b/tests/file_utils/__init__.py
similarity index 86%
rename from elifetools/file_utils/__init__.py
rename to tests/file_utils/__init__.py
index 2791a795..d475abd6 100644
--- a/elifetools/file_utils/__init__.py
+++ b/tests/file_utils/__init__.py
@@ -6,7 +6,7 @@
 
 
 def json_expected_folder(filename):
-    return os.path.join(BASE_DIR, "tests", "JSON", filename.split(".")[0])
+    return os.path.join(BASE_DIR, "JSON", filename.split(".")[0])
 
 
 def json_expected_file(filename, function_name):
@@ -20,12 +20,12 @@ def sample_xml(filename):
 
 
 def fixture_folder(folder_name):
-    return os.path.join(BASE_DIR, "tests", "fixtures", folder_name)
+    return os.path.join(BASE_DIR, "fixtures", folder_name)
 
 
 def fixture_module_name(folder_name, filename):
     return ".".join(
-        ["elifetools", "tests", "fixtures", folder_name, filename.rstrip(".py")]
+        ["tests", "fixtures", folder_name, filename.rstrip(".py")]
     )
 
 
diff --git a/elifetools/tests/fixtures/__init__.py b/tests/fixtures/__init__.py
similarity index 100%
rename from elifetools/tests/fixtures/__init__.py
rename to tests/fixtures/__init__.py
diff --git a/elifetools/tests/fixtures/test_abstract/__init__.py b/tests/fixtures/test_abstract/__init__.py
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rename from elifetools/tests/fixtures/test_sub_articles/content_01.xml
rename to tests/fixtures/test_sub_articles/content_01.xml
diff --git a/elifetools/tests/fixtures/test_sub_articles/content_01_expected.py b/tests/fixtures/test_sub_articles/content_01_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_sub_articles/content_01_expected.py
rename to tests/fixtures/test_sub_articles/content_01_expected.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/__init__.py b/tests/fixtures/test_supplementary_files_json/__init__.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/__init__.py
rename to tests/fixtures/test_supplementary_files_json/__init__.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_01.xml b/tests/fixtures/test_supplementary_files_json/content_01.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_01.xml
rename to tests/fixtures/test_supplementary_files_json/content_01.xml
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_01_expected.py b/tests/fixtures/test_supplementary_files_json/content_01_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_01_expected.py
rename to tests/fixtures/test_supplementary_files_json/content_01_expected.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_02.xml b/tests/fixtures/test_supplementary_files_json/content_02.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_02.xml
rename to tests/fixtures/test_supplementary_files_json/content_02.xml
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_02_expected.py b/tests/fixtures/test_supplementary_files_json/content_02_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_02_expected.py
rename to tests/fixtures/test_supplementary_files_json/content_02_expected.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_03.xml b/tests/fixtures/test_supplementary_files_json/content_03.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_03.xml
rename to tests/fixtures/test_supplementary_files_json/content_03.xml
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_03_expected.py b/tests/fixtures/test_supplementary_files_json/content_03_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_03_expected.py
rename to tests/fixtures/test_supplementary_files_json/content_03_expected.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_04.xml b/tests/fixtures/test_supplementary_files_json/content_04.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_04.xml
rename to tests/fixtures/test_supplementary_files_json/content_04.xml
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_04_expected.py b/tests/fixtures/test_supplementary_files_json/content_04_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_04_expected.py
rename to tests/fixtures/test_supplementary_files_json/content_04_expected.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_05.xml b/tests/fixtures/test_supplementary_files_json/content_05.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_05.xml
rename to tests/fixtures/test_supplementary_files_json/content_05.xml
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_05_expected.py b/tests/fixtures/test_supplementary_files_json/content_05_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_05_expected.py
rename to tests/fixtures/test_supplementary_files_json/content_05_expected.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_06.xml b/tests/fixtures/test_supplementary_files_json/content_06.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_06.xml
rename to tests/fixtures/test_supplementary_files_json/content_06.xml
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_06_expected.py b/tests/fixtures/test_supplementary_files_json/content_06_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_06_expected.py
rename to tests/fixtures/test_supplementary_files_json/content_06_expected.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_07.xml b/tests/fixtures/test_supplementary_files_json/content_07.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_07.xml
rename to tests/fixtures/test_supplementary_files_json/content_07.xml
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_07_expected.py b/tests/fixtures/test_supplementary_files_json/content_07_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_07_expected.py
rename to tests/fixtures/test_supplementary_files_json/content_07_expected.py
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_08.xml b/tests/fixtures/test_supplementary_files_json/content_08.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_08.xml
rename to tests/fixtures/test_supplementary_files_json/content_08.xml
diff --git a/elifetools/tests/fixtures/test_supplementary_files_json/content_08_expected.py b/tests/fixtures/test_supplementary_files_json/content_08_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_supplementary_files_json/content_08_expected.py
rename to tests/fixtures/test_supplementary_files_json/content_08_expected.py
diff --git a/elifetools/tests/fixtures/test_title_prefix_json/content_01.xml b/tests/fixtures/test_title_prefix_json/content_01.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_title_prefix_json/content_01.xml
rename to tests/fixtures/test_title_prefix_json/content_01.xml
diff --git a/elifetools/tests/fixtures/test_title_prefix_json/content_02.xml b/tests/fixtures/test_title_prefix_json/content_02.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_title_prefix_json/content_02.xml
rename to tests/fixtures/test_title_prefix_json/content_02.xml
diff --git a/elifetools/tests/fixtures/test_title_prefix_json/content_03.xml b/tests/fixtures/test_title_prefix_json/content_03.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_title_prefix_json/content_03.xml
rename to tests/fixtures/test_title_prefix_json/content_03.xml
diff --git a/elifetools/tests/fixtures/test_title_prefix_json/content_04.xml b/tests/fixtures/test_title_prefix_json/content_04.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_title_prefix_json/content_04.xml
rename to tests/fixtures/test_title_prefix_json/content_04.xml
diff --git a/elifetools/tests/fixtures/test_title_prefix_json/content_05.xml b/tests/fixtures/test_title_prefix_json/content_05.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_title_prefix_json/content_05.xml
rename to tests/fixtures/test_title_prefix_json/content_05.xml
diff --git a/elifetools/tests/fixtures/test_title_prefix_json/content_06.xml b/tests/fixtures/test_title_prefix_json/content_06.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_title_prefix_json/content_06.xml
rename to tests/fixtures/test_title_prefix_json/content_06.xml
diff --git a/elifetools/tests/fixtures/test_version_history/__init__.py b/tests/fixtures/test_version_history/__init__.py
similarity index 100%
rename from elifetools/tests/fixtures/test_version_history/__init__.py
rename to tests/fixtures/test_version_history/__init__.py
diff --git a/elifetools/tests/fixtures/test_version_history/content_01.xml b/tests/fixtures/test_version_history/content_01.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_version_history/content_01.xml
rename to tests/fixtures/test_version_history/content_01.xml
diff --git a/elifetools/tests/fixtures/test_version_history/content_01_expected.py b/tests/fixtures/test_version_history/content_01_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_version_history/content_01_expected.py
rename to tests/fixtures/test_version_history/content_01_expected.py
diff --git a/elifetools/tests/fixtures/test_version_history/content_02.xml b/tests/fixtures/test_version_history/content_02.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_version_history/content_02.xml
rename to tests/fixtures/test_version_history/content_02.xml
diff --git a/elifetools/tests/fixtures/test_version_history/content_02_expected.py b/tests/fixtures/test_version_history/content_02_expected.py
similarity index 100%
rename from elifetools/tests/fixtures/test_version_history/content_02_expected.py
rename to tests/fixtures/test_version_history/content_02_expected.py
diff --git a/elifetools/tests/fixtures/test_xmlio/test_reparsed_tag_01_expected.xml b/tests/fixtures/test_xmlio/test_reparsed_tag_01_expected.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_reparsed_tag_01_expected.xml
rename to tests/fixtures/test_xmlio/test_reparsed_tag_01_expected.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_01.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_01.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_01.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_01.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_01_expected.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_01_expected.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_01_expected.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_01_expected.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_02.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_02.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_02.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_02.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_02_expected.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_02_expected.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_02_expected.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_02_expected.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_03.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_03.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_03.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_03.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_03_expected.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_03_expected.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_03_expected.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_03_expected.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_04.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_04.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_04.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_04.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_04_expected.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_04_expected.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_04_expected.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_04_expected.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_05.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_05.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_05.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_05.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_05_expected.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_05_expected.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_05_expected.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_05_expected.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_06.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_06.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_06.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_06.xml
diff --git a/elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_06_expected.xml b/tests/fixtures/test_xmlio/test_rewrite_subject_group_06_expected.xml
similarity index 100%
rename from elifetools/tests/fixtures/test_xmlio/test_rewrite_subject_group_06_expected.xml
rename to tests/fixtures/test_xmlio/test_rewrite_subject_group_06_expected.xml
diff --git a/elifetools/tests/generate_expected_json.py b/tests/generate_expected_json.py
similarity index 91%
rename from elifetools/tests/generate_expected_json.py
rename to tests/generate_expected_json.py
index ac0f8e0e..61623b4c 100644
--- a/elifetools/tests/generate_expected_json.py
+++ b/tests/generate_expected_json.py
@@ -1,10 +1,8 @@
 import json
 import os
 
-os.sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
-
-import parseJATS as parser
-from elifetools.file_utils import sample_xml, json_expected_folder, json_expected_file
+from elifetools import parseJATS as parser
+from file_utils import sample_xml, json_expected_folder, json_expected_file
 
 """
 This is a helper to generate JSON files containing
@@ -87,7 +85,7 @@
             if type(function_attrs[1]) == tuple:
                 function_arguments = function_attrs[1]
             else:
-                print "arguments for function " + function_name + " must be a tuple"
+                print("arguments for function " + function_name + " must be a tuple")
 
 
         soup = parser.parse_document(sample_xml(filename))
@@ -98,7 +96,7 @@
             result = getattr(parser, function_name)(soup)
 
         if result is not None:
-            print "writing " + json_expected_file(filename, function_name)
-            with open(json_expected_file(filename, function_name), "wb") as json_file_fp:
+            print("writing " + json_expected_file(filename, function_name))
+            with open(json_expected_file(filename, function_name), "w") as json_file_fp:
                 json_file_fp.write(json.dumps(result, indent=4))
 
diff --git a/elifetools/sample-xml/elife-00666.xml b/tests/sample-xml/elife-00666.xml
similarity index 100%
rename from elifetools/sample-xml/elife-00666.xml
rename to tests/sample-xml/elife-00666.xml
diff --git a/elifetools/sample-xml/elife-00777.xml b/tests/sample-xml/elife-00777.xml
similarity index 100%
rename from elifetools/sample-xml/elife-00777.xml
rename to tests/sample-xml/elife-00777.xml
diff --git a/elifetools/sample-xml/elife-02833-v2.xml b/tests/sample-xml/elife-02833-v2.xml
similarity index 100%
rename from elifetools/sample-xml/elife-02833-v2.xml
rename to tests/sample-xml/elife-02833-v2.xml
diff --git a/elifetools/sample-xml/elife-09215-v1.xml b/tests/sample-xml/elife-09215-v1.xml
similarity index 100%
rename from elifetools/sample-xml/elife-09215-v1.xml
rename to tests/sample-xml/elife-09215-v1.xml
diff --git a/elifetools/sample-xml/elife-10421-v1.xml b/tests/sample-xml/elife-10421-v1.xml
similarity index 100%
rename from elifetools/sample-xml/elife-10421-v1.xml
rename to tests/sample-xml/elife-10421-v1.xml
diff --git a/elifetools/sample-xml/elife-14093-v1.xml b/tests/sample-xml/elife-14093-v1.xml
similarity index 100%
rename from elifetools/sample-xml/elife-14093-v1.xml
rename to tests/sample-xml/elife-14093-v1.xml
diff --git a/elifetools/sample-xml/elife-kitchen-sink.xml b/tests/sample-xml/elife-kitchen-sink.xml
similarity index 100%
rename from elifetools/sample-xml/elife-kitchen-sink.xml
rename to tests/sample-xml/elife-kitchen-sink.xml
diff --git a/elifetools/sample-xml/elife00005.xml b/tests/sample-xml/elife00005.xml
similarity index 100%
rename from elifetools/sample-xml/elife00005.xml
rename to tests/sample-xml/elife00005.xml
diff --git a/elifetools/sample-xml/elife00007.xml b/tests/sample-xml/elife00007.xml
similarity index 100%
rename from elifetools/sample-xml/elife00007.xml
rename to tests/sample-xml/elife00007.xml
diff --git a/elifetools/sample-xml/elife00013.xml b/tests/sample-xml/elife00013.xml
similarity index 100%
rename from elifetools/sample-xml/elife00013.xml
rename to tests/sample-xml/elife00013.xml
diff --git a/elifetools/sample-xml/elife00051.xml b/tests/sample-xml/elife00051.xml
similarity index 100%
rename from elifetools/sample-xml/elife00051.xml
rename to tests/sample-xml/elife00051.xml
diff --git a/elifetools/sample-xml/elife00133.xml b/tests/sample-xml/elife00133.xml
similarity index 100%
rename from elifetools/sample-xml/elife00133.xml
rename to tests/sample-xml/elife00133.xml
diff --git a/elifetools/sample-xml/elife00190.xml b/tests/sample-xml/elife00190.xml
similarity index 100%
rename from elifetools/sample-xml/elife00190.xml
rename to tests/sample-xml/elife00190.xml
diff --git a/elifetools/sample-xml/elife00240.xml b/tests/sample-xml/elife00240.xml
similarity index 100%
rename from elifetools/sample-xml/elife00240.xml
rename to tests/sample-xml/elife00240.xml
diff --git a/elifetools/sample-xml/elife00270.xml b/tests/sample-xml/elife00270.xml
similarity index 100%
rename from elifetools/sample-xml/elife00270.xml
rename to tests/sample-xml/elife00270.xml
diff --git a/elifetools/sample-xml/elife00351.xml b/tests/sample-xml/elife00351.xml
similarity index 100%
rename from elifetools/sample-xml/elife00351.xml
rename to tests/sample-xml/elife00351.xml
diff --git a/elifetools/sample-xml/elife00380.xml b/tests/sample-xml/elife00380.xml
similarity index 100%
rename from elifetools/sample-xml/elife00380.xml
rename to tests/sample-xml/elife00380.xml
diff --git a/elifetools/sample-xml/elife02304.xml b/tests/sample-xml/elife02304.xml
similarity index 100%
rename from elifetools/sample-xml/elife02304.xml
rename to tests/sample-xml/elife02304.xml
diff --git a/elifetools/sample-xml/elife02935.xml b/tests/sample-xml/elife02935.xml
similarity index 100%
rename from elifetools/sample-xml/elife02935.xml
rename to tests/sample-xml/elife02935.xml
diff --git a/elifetools/sample-xml/elife04490.xml b/tests/sample-xml/elife04490.xml
similarity index 100%
rename from elifetools/sample-xml/elife04490.xml
rename to tests/sample-xml/elife04490.xml
diff --git a/elifetools/sample-xml/elife04493.xml b/tests/sample-xml/elife04493.xml
similarity index 100%
rename from elifetools/sample-xml/elife04493.xml
rename to tests/sample-xml/elife04493.xml
diff --git a/elifetools/sample-xml/elife04953.xml b/tests/sample-xml/elife04953.xml
similarity index 100%
rename from elifetools/sample-xml/elife04953.xml
rename to tests/sample-xml/elife04953.xml
diff --git a/elifetools/sample-xml/elife05031.xml b/tests/sample-xml/elife05031.xml
similarity index 100%
rename from elifetools/sample-xml/elife05031.xml
rename to tests/sample-xml/elife05031.xml
diff --git a/elifetools/sample-xml/elife05502.xml b/tests/sample-xml/elife05502.xml
similarity index 100%
rename from elifetools/sample-xml/elife05502.xml
rename to tests/sample-xml/elife05502.xml
diff --git a/elifetools/sample-xml/elife06003.xml b/tests/sample-xml/elife06003.xml
similarity index 100%
rename from elifetools/sample-xml/elife06003.xml
rename to tests/sample-xml/elife06003.xml
diff --git a/elifetools/sample-xml/elife06726.xml b/tests/sample-xml/elife06726.xml
similarity index 100%
rename from elifetools/sample-xml/elife06726.xml
rename to tests/sample-xml/elife06726.xml
diff --git a/elifetools/sample-xml/elife07586.xml b/tests/sample-xml/elife07586.xml
similarity index 100%
rename from elifetools/sample-xml/elife07586.xml
rename to tests/sample-xml/elife07586.xml
diff --git a/elifetools/sample-xml/elife09853.xml b/tests/sample-xml/elife09853.xml
similarity index 100%
rename from elifetools/sample-xml/elife09853.xml
rename to tests/sample-xml/elife09853.xml
diff --git a/elifetools/sample-xml/elife_poa_e06828.xml b/tests/sample-xml/elife_poa_e06828.xml
similarity index 100%
rename from elifetools/sample-xml/elife_poa_e06828.xml
rename to tests/sample-xml/elife_poa_e06828.xml
diff --git a/elifetools/sample-xml/simple-jats-doctype-1.1.xml b/tests/sample-xml/simple-jats-doctype-1.1.xml
similarity index 100%
rename from elifetools/sample-xml/simple-jats-doctype-1.1.xml
rename to tests/sample-xml/simple-jats-doctype-1.1.xml
diff --git a/elifetools/sample-xml/simple-jats-doctype-1.1d3.xml b/tests/sample-xml/simple-jats-doctype-1.1d3.xml
similarity index 100%
rename from elifetools/sample-xml/simple-jats-doctype-1.1d3.xml
rename to tests/sample-xml/simple-jats-doctype-1.1d3.xml
diff --git a/elifetools/sample-xml/xmlio_input.xml b/tests/sample-xml/xmlio_input.xml
similarity index 100%
rename from elifetools/sample-xml/xmlio_input.xml
rename to tests/sample-xml/xmlio_input.xml
diff --git a/elifetools/sample-xml/xmlio_output_convert_xlink.xml b/tests/sample-xml/xmlio_output_convert_xlink.xml
similarity index 100%
rename from elifetools/sample-xml/xmlio_output_convert_xlink.xml
rename to tests/sample-xml/xmlio_output_convert_xlink.xml
diff --git a/elifetools/tests/test_json_rewrite.py b/tests/test_json_rewrite.py
similarity index 100%
rename from elifetools/tests/test_json_rewrite.py
rename to tests/test_json_rewrite.py
diff --git a/elifetools/tests/test_parse_jats.py b/tests/test_parse_jats.py
similarity index 99%
rename from elifetools/tests/test_parse_jats.py
rename to tests/test_parse_jats.py
index 679a3cca..5c59cd8f 100644
--- a/elifetools/tests/test_parse_jats.py
+++ b/tests/test_parse_jats.py
@@ -9,8 +9,8 @@
 from elifetools import parseJATS as parser
 from elifetools import rawJATS as raw_parser
 from elifetools.utils import date_struct
-from elifetools.file_utils import sample_xml, json_expected_file, read_fixture
-from elifetools.tests import soup_body
+from tests.file_utils import sample_xml, json_expected_file, read_fixture
+from tests import soup_body
 
 
 @ddt
diff --git a/elifetools/tests/test_raw_parser.py b/tests/test_raw_parser.py
similarity index 99%
rename from elifetools/tests/test_raw_parser.py
rename to tests/test_raw_parser.py
index 37c00583..6d4be3fe 100644
--- a/elifetools/tests/test_raw_parser.py
+++ b/tests/test_raw_parser.py
@@ -4,7 +4,7 @@
 from ddt import ddt, data, unpack
 from elifetools import parseJATS as parser
 from elifetools import rawJATS as raw_parser
-from elifetools.file_utils import sample_xml, read_fixture
+from tests.file_utils import sample_xml, read_fixture
 
 
 @ddt
diff --git a/elifetools/tests/test_utils.py b/tests/test_utils.py
similarity index 99%
rename from elifetools/tests/test_utils.py
rename to tests/test_utils.py
index c69cfc39..0c1df351 100644
--- a/elifetools/tests/test_utils.py
+++ b/tests/test_utils.py
@@ -8,7 +8,7 @@
 from elifetools import utils
 from elifetools import parseJATS as parser
 from elifetools.utils_html import allowed_xml_tag_fragments
-from elifetools.tests import soup_body
+from tests import soup_body
 
 
 @ddt
diff --git a/elifetools/tests/test_utils_html.py b/tests/test_utils_html.py
similarity index 100%
rename from elifetools/tests/test_utils_html.py
rename to tests/test_utils_html.py
diff --git a/elifetools/tests/test_xmlio.py b/tests/test_xmlio.py
similarity index 99%
rename from elifetools/tests/test_xmlio.py
rename to tests/test_xmlio.py
index 34df958c..492acdb6 100644
--- a/elifetools/tests/test_xmlio.py
+++ b/tests/test_xmlio.py
@@ -7,7 +7,7 @@
 from ddt import ddt, data, unpack
 
 from elifetools import xmlio
-from elifetools.file_utils import sample_xml, read_fixture, fixture_file
+from tests.file_utils import sample_xml, read_fixture, fixture_file
 
 
 @ddt