Repository: ArneBinder/pytorch-ie (language: python)

Issue:
mypy does not check for unreachable code
This was disabled to get #76 merged.


Discussion / hints:

Fix patch:
diff --git a/.coveragerc b/.coveragerc
deleted file mode 100644
index 0e0eceb9..00000000
--- a/.coveragerc
+++ /dev/null
@@ -1,20 +0,0 @@
-[run]
-source = pytorch_ie
-omit = pytorch_ie/__main__.py
-
-[report]
-exclude_lines =
-    # Have to re-enable the standard pragma
-    pragma: no cover
-
-    # Don't complain about missing debug-only code:
-    def __repr__
-    if self\.debug
-
-    # Don't complain if tests don't hit defensive assertion code:
-    raise AssertionError
-    raise NotImplementedError
-
-    # Don't complain if non-runnable code isn't run:
-    if 0:
-    if __name__ == .__main__.:
diff --git a/.darglint b/.darglint
new file mode 100644
index 00000000..9262793c
--- /dev/null
+++ b/.darglint
@@ -0,0 +1,3 @@
+[darglint]
+docstring_style=google
+strictness=short
diff --git a/.flake8 b/.flake8
new file mode 100644
index 00000000..3bc18764
--- /dev/null
+++ b/.flake8
@@ -0,0 +1,10 @@
+[flake8]
+max-line-length = 99
+select = B,B9,C,D,DAR,E,F,N,RST,S,W
+ignore = E203,E501,RST201,RST203,RST301,W503
+max-complexity = 10
+docstring-convention = google
+per-file-ignores =
+    tests/*.py: S101,D100,D103,D104
+rst-roles = class,const,func,meth,mod,ref
+rst-directives = deprecated
diff --git a/.github/workflows/constraints.txt b/.github/workflows/constraints.txt
new file mode 100644
index 00000000..91e24e32
--- /dev/null
+++ b/.github/workflows/constraints.txt
@@ -0,0 +1,5 @@
+pip==22.0.3
+nox==2022.1.7
+nox-poetry==0.9.0
+poetry==1.1.13
+virtualenv==20.13.1
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
new file mode 100644
index 00000000..983d833e
--- /dev/null
+++ b/.github/workflows/release.yml
@@ -0,0 +1,73 @@
+name: Release
+
+on:
+    push:
+        branches:
+            - main
+            - master
+
+jobs:
+    release:
+        name: Release
+        runs-on: ubuntu-latest
+        steps:
+            - name: Check out the repository
+              uses: actions/checkout@v2.4.0
+              with:
+                  fetch-depth: 2
+
+            - name: Set up Python
+              uses: actions/setup-python@v2.3.2
+              with:
+                  python-version: "3.9"
+
+            - name: Upgrade pip
+              run: |
+                  pip install --constraint=.github/workflows/constraints.txt pip
+                  pip --version
+            - name: Install Poetry
+              run: |
+                  pip install --constraint=.github/workflows/constraints.txt poetry
+                  poetry --version
+            - name: Check if there is a parent commit
+              id: check-parent-commit
+              run: |
+                  echo "::set-output name=sha::$(git rev-parse --verify --quiet HEAD^)"
+            - name: Detect and tag new version
+              id: check-version
+              if: steps.check-parent-commit.outputs.sha
+              uses: salsify/action-detect-and-tag-new-version@v2.0.1
+              with:
+                  version-command: |
+                      bash -o pipefail -c "poetry version | awk '{ print \$2 }'"
+            - name: Bump version for developmental release
+              if: "! steps.check-version.outputs.tag"
+              run: |
+                  poetry version patch &&
+                  version=$(poetry version | awk '{ print $2 }') &&
+                  poetry version $version.dev.$(date +%s)
+            - name: Build package
+              run: |
+                  poetry build --ansi
+            - name: Publish package on PyPI
+              if: steps.check-version.outputs.tag
+              uses: pypa/gh-action-pypi-publish@v1.5.0
+              with:
+                  user: __token__
+                  password: ${{ secrets.PYPI_TOKEN }}
+
+            - name: Publish package on TestPyPI
+              if: "! steps.check-version.outputs.tag"
+              uses: pypa/gh-action-pypi-publish@v1.5.0
+              with:
+                  user: __token__
+                  password: ${{ secrets.TEST_PYPI_TOKEN }}
+                  repository_url: https://test.pypi.org/legacy/
+
+            - name: Publish the release notes
+              uses: release-drafter/release-drafter@v5.18.1
+              with:
+                  publish: ${{ steps.check-version.outputs.tag != '' }}
+                  tag: ${{ steps.check-version.outputs.tag }}
+              env:
+                  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index c6c081ae..5849ede8 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,50 +1,78 @@
-# See https://pre-commit.com/ for usage and config
 repos:
-- repo: local
-  hooks:
-  - id: isort
-    name: isort
-    stages: [commit]
-    language: system
-    entry: poetry run isort
-    types: [python]
-
-  - id: black
-    name: black
-    stages: [commit]
-    language: system
-    entry: poetry run black
-    types: [python]
-    args: [--line-length, "99"]
-
-#   - id: flake8
-#     name: flake8
-#     stages: [commit]
-#     language: system
-#     entry: pipenv run flake8
-#     types: [python]
-#     exclude: setup.py
-
-  - id: mypy
-    name: mypy
-    stages: [commit]
-    language: system
-    entry: poetry run mypy
-    types: [python]
-    require_serial: true
-
-  - id: pytest
-    name: pytest
-    stages: [commit]
-    language: system
-    entry: poetry run pytest -k "not slow"
-    types: [python]
-    pass_filenames: false
-
-  - id: pytest-cov
-    name: pytest
-    stages: [push]
-    language: system
-    entry: poetry run pytest --cov --cov-fail-under=100
-    types: [python]
-    pass_filenames: false
+    - repo: local
+      hooks:
+          - id: black
+            name: black
+            entry: black
+            language: system
+            types: [python]
+            require_serial: true
+
+          - id: check-added-large-files
+            name: Check for added large files
+            entry: check-added-large-files
+            language: system
+
+          - id: check-toml
+            name: Check Toml
+            entry: check-toml
+            language: system
+            types: [toml]
+
+          - id: check-yaml
+            name: Check Yaml
+            entry: check-yaml
+            language: system
+            types: [yaml]
+
+          #   - id: darglint
+          #     name: darglint
+          #     entry: darglint
+          #     language: system
+          #     types: [python]
+          #     stages: [manual]
+
+          - id: end-of-file-fixer
+            name: Fix End of Files
+            entry: end-of-file-fixer
+            language: system
+            types: [text]
+            stages: [commit, push, manual]
+
+          #   - id: flake8
+          #     name: flake8
+          #     entry: flake8
+          #     language: system
+          #     types: [python]
+          #     require_serial: true
+          #     args: [--darglint-ignore-regex, .*]
+
+          - id: isort
+            name: isort
+            entry: isort
+            require_serial: true
+            language: system
+            types_or: [cython, pyi, python]
+            args: ["--filter-files"]
+
+          - id: pyupgrade
+            name: pyupgrade
+            description: Automatically upgrade syntax for newer versions.
+            entry: pyupgrade
+            language: system
+            types: [python]
+            args: [--py38-plus]
+
+          - id: trailing-whitespace
+            name: Trim Trailing Whitespace
+            entry: trailing-whitespace-fixer
+            language: system
+            types: [text]
+            stages: [commit, push, manual]
+
+    - repo: https://github.com/pre-commit/mirrors-prettier
+      rev: v2.5.1
+      hooks:
+          - id: prettier
+            types_or: [yaml, json, toml, markdown]
+            args: ["--print-width=99"]
diff --git a/README.md b/README.md
index b1722692..19d26cbc 100644
--- a/README.md
+++ b/README.md
@@ -5,6 +5,7 @@
 ```sh
 pip install git+ssh://git@github.com/ChristophAlt/pytorch-ie.git
 ```
+
 ## ⚡&nbsp;&nbsp;Example
 
 #### Span-classification-based Named Entity Recognition
@@ -72,9 +73,13 @@ for relation in document.predictions("relations"):
 # (SOSV -> Po Bronson) -> org:top_members/employees
 # (IndieBio -> Po Bronson) -> org:top_members/employees
 ```
+
 </details>
 
+<!-- github-only -->
+
 ## Development Setup
+
 ```sh
 # Install dependencies
 poetry install
@@ -85,9 +90,11 @@ poetry run pre-commit install -t pre-push
 ```
 
 ## Credits
+
 This package was created with Cookiecutter and the [sourcery-ai/python-best-practices-cookiecutter](https://github.com/sourcery-ai/python-best-practices-cookiecutter) project template.
 
 ## BibTeX
+
 If you want to cite the framework feel free to use this:
 
 ```bibtex
diff --git a/codecov.yml b/codecov.yml
new file mode 100644
index 00000000..64d2dc3e
--- /dev/null
+++ b/codecov.yml
@@ -0,0 +1,9 @@
+comment: false
+coverage:
+    status:
+        project:
+            default:
+                target: "50"
+        patch:
+            default:
+                target: "50"
diff --git a/docs/conf.py b/docs/conf.py
new file mode 100644
index 00000000..e15255b9
--- /dev/null
+++ b/docs/conf.py
@@ -0,0 +1,11 @@
+"""Sphinx configuration."""
+project = "PyTorch IE"
+author = "Christoph Alt"
+copyright = "2022, Christoph Alt"
+extensions = [
+    "sphinx.ext.autodoc",
+    "sphinx.ext.napoleon",
+    "myst_parser",
+]
+autodoc_typehints = "description"
+html_theme = "furo"
diff --git a/docs/index.md b/docs/index.md
new file mode 100644
index 00000000..788591be
--- /dev/null
+++ b/docs/index.md
@@ -0,0 +1,21 @@
+```{include} ../README.md
+---
+end-before: github-only
+---
+```
+
+[license]: license
+[contributor guide]: contributing
+
+```{toctree}
+---
+hidden:
+maxdepth: 1
+---
+
+Reference <reference>
+contributing
+Code of Conduct <codeofconduct>
+License <license>
+Changelog <https://github.com/ChristophAlt/pytorch-ie/releases>
+```
diff --git a/docs/requirements.tx b/docs/requirements.tx
new file mode 100644
index 00000000..2c694b56
--- /dev/null
+++ b/docs/requirements.tx
@@ -0,0 +1,4 @@
+furo==2022.2.14.1
+sphinx==4.4.0
+sphinx-click==3.1.0
+myst_parser==0.17.0
diff --git a/noxfile.py b/noxfile.py
new file mode 100644
index 00000000..4404582d
--- /dev/null
+++ b/noxfile.py
@@ -0,0 +1,245 @@
+"""Nox sessions."""
+import os
+import shlex
+import shutil
+import sys
+from pathlib import Path
+from textwrap import dedent
+
+import nox
+
+try:
+    from nox_poetry import Session, session
+except ImportError:
+    message = f"""\
+    Nox failed to import the 'nox-poetry' package.
+    Please install it using the following command:
+    {sys.executable} -m pip install nox-poetry"""
+    raise SystemExit(dedent(message)) from None
+
+
+package = "pytorch_ie"
+python_versions = ["3.9", "3.8"]
+nox.needs_version = ">= 2021.6.6"
+nox.options.sessions = (
+    "pre-commit",
+    # "safety",
+    "mypy",
+    "tests_not_slow",
+    # "typeguard",
+    "xdoctest",
+    "docs-build",
+)
+
+
+def activate_virtualenv_in_precommit_hooks(session: Session) -> None:
+    """Activate virtualenv in hooks installed by pre-commit.
+    This function patches git hooks installed by pre-commit to activate the
+    session's virtual environment. This allows pre-commit to locate hooks in
+    that environment when invoked from git.
+    Args:
+        session: The Session object.
+    """
+    assert session.bin is not None  # noqa: S101
+
+    # Only patch hooks containing a reference to this session's bindir. Support
+    # quoting rules for Python and bash, but strip the outermost quotes so we
+    # can detect paths within the bindir, like <bindir>/python.
+    bindirs = [
+        bindir[1:-1] if bindir[0] in "'\"" else bindir
+        for bindir in (repr(session.bin), shlex.quote(session.bin))
+    ]
+
+    virtualenv = session.env.get("VIRTUAL_ENV")
+    if virtualenv is None:
+        return
+
+    headers = {
+        # pre-commit < 2.16.0
+        "python": f"""\
+            import os
+            os.environ["VIRTUAL_ENV"] = {virtualenv!r}
+            os.environ["PATH"] = os.pathsep.join((
+                {session.bin!r},
+                os.environ.get("PATH", ""),
+            ))
+            """,
+        # pre-commit >= 2.16.0
+        "bash": f"""\
+            VIRTUAL_ENV={shlex.quote(virtualenv)}
+            PATH={shlex.quote(session.bin)}"{os.pathsep}$PATH"
+            """,
+        # pre-commit >= 2.17.0 on Windows forces sh shebang
+        "/bin/sh": f"""\
+            VIRTUAL_ENV={shlex.quote(virtualenv)}
+            PATH={shlex.quote(session.bin)}"{os.pathsep}$PATH"
+            """,
+    }
+
+    hookdir = Path(".git") / "hooks"
+    if not hookdir.is_dir():
+        return
+
+    for hook in hookdir.iterdir():
+        if hook.name.endswith(".sample") or not hook.is_file():
+            continue
+
+        if not hook.read_bytes().startswith(b"#!"):
+            continue
+
+        text = hook.read_text()
+
+        if not any(
+            Path("A") == Path("a") and bindir.lower() in text.lower() or bindir in text
+            for bindir in bindirs
+        ):
+            continue
+
+        lines = text.splitlines()
+
+        for executable, header in headers.items():
+            if executable in lines[0].lower():
+                lines.insert(1, dedent(header))
+                hook.write_text("\n".join(lines))
+                break
+
+
+@session(name="pre-commit", python=python_versions[0])
+def precommit(session: Session) -> None:
+    """Lint using pre-commit."""
+    args = session.posargs or [
+        "run",
+        "--all-files",
+        "--hook-stage=manual",
+        "--show-diff-on-failure",
+    ]
+    session.install(
+        "black",
+        "darglint",
+        "flake8",
+        "flake8-bandit",
+        "flake8-bugbear",
+        "flake8-docstrings",
+        "flake8-rst-docstrings",
+        "isort",
+        "pep8-naming",
+        "pre-commit",
+        "pre-commit-hooks",
+        "pyupgrade",
+    )
+    session.run("pre-commit", *args)
+    if args and args[0] == "install":
+        activate_virtualenv_in_precommit_hooks(session)
+
+
+@session(python=python_versions[0])
+def safety(session: Session) -> None:
+    """Scan dependencies for insecure packages."""
+    requirements = session.poetry.export_requirements()
+    session.install("safety")
+    session.run("safety", "check", "--full-report", f"--file={requirements}")
+
+
+@session(python=python_versions)
+def mypy(session: Session) -> None:
+    """Type-check using mypy."""
+    # args = session.posargs or ["src", "tests", "docs/conf.py"]
+    args = session.posargs or ["pytorch_ie", "tests", "docs/conf.py"]
+    session.install(".")
+    session.install("mypy", "pytest")
+    session.run("mypy", *args)
+    if not session.posargs:
+        session.run("mypy", f"--python-executable={sys.executable}", "noxfile.py")
+
+
+@session(python=python_versions)
+def tests(session: Session) -> None:
+    """Run the test suite."""
+    session.install(".")
+    session.install("coverage[toml]", "pytest", "pygments", "sh")
+    try:
+        session.run("coverage", "run", "--parallel", "-m", "pytest", *session.posargs)
+    finally:
+        if session.interactive:
+            session.notify("coverage", posargs=[])
+
+
+@session(python=python_versions)
+def tests_not_slow(session: Session) -> None:
+    """Run the test suite."""
+    session.install(".")
+    session.install("coverage[toml]", "pytest", "pygments", "sh")
+    try:
+        session.run(
+            "coverage", "run", "--parallel", "-m", "pytest", "-k", "not slow", *session.posargs
+        )
+    finally:
+        if session.interactive:
+            session.notify("coverage", posargs=[])
+
+
+@session(python=python_versions[0])
+def coverage(session: Session) -> None:
+    """Produce the coverage report."""
+    args = session.posargs or ["report"]
+
+    session.install("coverage[toml]")
+
+    if not session.posargs and any(Path().glob(".coverage.*")):
+        session.run("coverage", "combine")
+
+    session.run("coverage", *args)
+
+
+@session(python=python_versions[0])
+def typeguard(session: Session) -> None:
+    """Runtime type checking using Typeguard."""
+    session.install(".")
+    session.install("pytest", "typeguard", "pygments")
+    session.run("pytest", f"--typeguard-packages={package}", *session.posargs)
+
+
+@session(python=python_versions)
+def xdoctest(session: Session) -> None:
+    """Run examples with xdoctest."""
+    if session.posargs:
+        args = [package, *session.posargs]
+    else:
+        args = [f"--modname={package}", "--command=all"]
+        if "FORCE_COLOR" in os.environ:
+            args.append("--colored=1")
+
+    session.install(".")
+    session.install("xdoctest[colors]")
+    session.run("python", "-m", "xdoctest", *args)
+
+
+@session(name="docs-build", python=python_versions[0])
+def docs_build(session: Session) -> None:
+    """Build the documentation."""
+    args = session.posargs or ["docs", "docs/_build"]
+    if not session.posargs and "FORCE_COLOR" in os.environ:
+        args.insert(0, "--color")
+
+    session.install(".")
+    session.install("sphinx", "sphinx-click", "furo", "myst-parser")
+
+    build_dir = Path("docs", "_build")
+    if build_dir.exists():
+        shutil.rmtree(build_dir)
+
+    session.run("sphinx-build", *args)
+
+
+@session(python=python_versions[0])
+def docs(session: Session) -> None:
+    """Build and serve the documentation with live reloading on file changes."""
+    args = session.posargs or ["--open-browser", "docs", "docs/_build"]
+    session.install(".")
+    session.install("sphinx", "sphinx-autobuild", "sphinx-click", "furo", "myst-parser")
+
+    build_dir = Path("docs", "_build")
+    if build_dir.exists():
+        shutil.rmtree(build_dir)
+
+    session.run("sphinx-autobuild", *args)
diff --git a/poetry.lock b/poetry.lock
index 3833de1f..5bc6c32e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -40,6 +40,25 @@ python-versions = ">=3.6"
 [package.dependencies]
 frozenlist = ">=1.1.0"
 
+[[package]]
+name = "alabaster"
+version = "0.7.12"
+description = "A configurable sidebar-enabled Sphinx theme"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "argcomplete"
+version = "1.12.3"
+description = "Bash tab completion for argparse"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.extras]
+test = ["coverage", "flake8", "pexpect", "wheel"]
+
 [[package]]
 name = "async-timeout"
 version = "4.0.2"
@@ -70,39 +89,80 @@ docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
 tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
 tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"]
 
+[[package]]
+name = "babel"
+version = "2.9.1"
+description = "Internationalization utilities"
+category = "dev"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+
+[package.dependencies]
+pytz = ">=2015.7"
+
+[[package]]
+name = "bandit"
+version = "1.7.2"
+description = "Security oriented static analyser for python code."
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+colorama = {version = ">=0.3.9", markers = "platform_system == \"Windows\""}
+GitPython = ">=1.0.1"
+PyYAML = ">=5.3.1"
+stevedore = ">=1.20.0"
+
+[package.extras]
+test = ["beautifulsoup4 (>=4.8.0)", "coverage (>=4.5.4)", "fixtures (>=3.0.0)", "flake8 (>=4.0.0)", "pylint (==1.9.4)", "stestr (>=2.5.0)", "testscenarios (>=0.5.0)", "testtools (>=2.3.0)", "toml"]
+toml = ["toml"]
+yaml = ["pyyaml"]
+
+[[package]]
+name = "beautifulsoup4"
+version = "4.10.0"
+description = "Screen-scraping library"
+category = "dev"
+optional = false
+python-versions = ">3.0.0"
+
+[package.dependencies]
+soupsieve = ">1.2"
+
+[package.extras]
+html5lib = ["html5lib"]
+lxml = ["lxml"]
+
 [[package]]
 name = "black"
-version = "21.12b0"
+version = "22.1.0"
 description = "The uncompromising code formatter."
 category = "dev"
 optional = false
 python-versions = ">=3.6.2"
 
 [package.dependencies]
-click = ">=7.1.2"
+click = ">=8.0.0"
 mypy-extensions = ">=0.4.3"
-pathspec = ">=0.9.0,<1"
+pathspec = ">=0.9.0"
 platformdirs = ">=2"
-tomli = ">=0.2.6,<2.0.0"
-typing-extensions = [
-    {version = ">=3.10.0.0", markers = "python_version < \"3.10\""},
-    {version = "!=3.10.0.1", markers = "python_version >= \"3.10\""},
-]
+tomli = ">=1.1.0"
+typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
 colorama = ["colorama (>=0.4.3)"]
 d = ["aiohttp (>=3.7.4)"]
 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
-python2 = ["typed-ast (>=1.4.3)"]
 uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "cachetools"
-version = "4.2.4"
+version = "5.0.0"
 description = "Extensible memoizing collections and decorators"
 category = "main"
 optional = false
-python-versions = "~=3.5"
+python-versions = "~=3.7"
 
 [[package]]
 name = "certifi"
@@ -122,7 +182,7 @@ python-versions = ">=3.6.1"
 
 [[package]]
 name = "charset-normalizer"
-version = "2.0.9"
+version = "2.0.12"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "main"
 optional = false
@@ -133,7 +193,7 @@ unicode_backport = ["unicodedata2"]
 
 [[package]]
 name = "click"
-version = "8.0.3"
+version = "8.0.4"
 description = "Composable command line interface toolkit"
 category = "main"
 optional = false
@@ -150,13 +210,27 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
+[[package]]
+name = "colorlog"
+version = "6.6.0"
+description = "Add colours to the output of Python's logging module."
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
+
+[package.extras]
+development = ["black", "flake8", "mypy", "pytest", "types-colorama"]
+
 [[package]]
 name = "coverage"
-version = "6.2"
+version = "6.3.2"
 description = "Code coverage measurement for Python"
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 tomli = {version = "*", optional = true, markers = "extra == \"toml\""}
@@ -164,9 +238,17 @@ tomli = {version = "*", optional = true, markers = "extra == \"toml\""}
 [package.extras]
 toml = ["tomli"]
 
+[[package]]
+name = "darglint"
+version = "1.8.1"
+description = "A utility for ensuring Google-style docstrings stay up to date with the source code."
+category = "dev"
+optional = false
+python-versions = ">=3.6,<4.0"
+
 [[package]]
 name = "datasets"
-version = "1.17.0"
+version = "1.18.3"
 description = "HuggingFace community-driven open-source library of datasets"
 category = "main"
 optional = false
@@ -190,13 +272,13 @@ xxhash = "*"
 apache-beam = ["apache-beam (>=2.26.0)"]
 audio = ["librosa"]
 benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "transformers (==3.0.2)"]
-dev = ["absl-py", "pytest", "pytest-datadir", "pytest-xdist", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore", "boto3", "botocore", "faiss-cpu (>=1.6.4)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs (==2021.08.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "torch", "torchaudio", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "Pillow (>=6.2.1)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)", "importlib-resources"]
+dev = ["absl-py", "pytest", "pytest-datadir", "pytest-xdist", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore", "boto3", "botocore", "faiss-cpu (>=1.6.4)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs (==2021.08.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "torch", "torchaudio", "soundfile", "transformers", "bs4", "conllu", "h5py", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "torchmetrics (==0.6.0)", "mauve-text", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "Pillow (>=6.2.1)", "librosa", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)", "importlib-resources"]
 docs = ["docutils (==0.16.0)", "recommonmark", "sphinx (==3.1.2)", "sphinx-markdown-tables", "sphinx-rtd-theme (==0.4.3)", "sphinxext-opengraph (==0.4.1)", "sphinx-copybutton", "fsspec (<2021.9.0)", "s3fs", "sphinx-panels", "sphinx-inline-tabs", "myst-parser", "Markdown (!=3.3.5)"]
 quality = ["black (==21.4b0)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)"]
 s3 = ["fsspec", "boto3", "botocore", "s3fs"]
 tensorflow = ["tensorflow (>=2.2.0,!=2.6.0,!=2.6.1)"]
 tensorflow_gpu = ["tensorflow-gpu (>=2.2.0,!=2.6.0,!=2.6.1)"]
-tests = ["absl-py", "pytest", "pytest-datadir", "pytest-xdist", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore", "boto3", "botocore", "faiss-cpu (>=1.6.4)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs (==2021.08.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "torch", "torchaudio", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "Pillow (>=6.2.1)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"]
+tests = ["absl-py", "pytest", "pytest-datadir", "pytest-xdist", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore", "boto3", "botocore", "faiss-cpu (>=1.6.4)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs (==2021.08.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "torch", "torchaudio", "soundfile", "transformers", "bs4", "conllu", "h5py", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "torchmetrics (==0.6.0)", "mauve-text", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "Pillow (>=6.2.1)", "librosa", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"]
 torch = ["torch"]
 vision = ["Pillow (>=6.2.1)"]
 
@@ -219,9 +301,33 @@ category = "dev"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "docutils"
+version = "0.17.1"
+description = "Docutils -- Python Documentation Utilities"
+category = "dev"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+
+[[package]]
+name = "dparse"
+version = "0.5.1"
+description = "A parser for Python dependency files"
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.dependencies]
+packaging = "*"
+pyyaml = "*"
+toml = "*"
+
+[package.extras]
+pipenv = ["pipenv"]
+
 [[package]]
 name = "filelock"
-version = "3.4.2"
+version = "3.6.0"
 description = "A platform independent file lock."
 category = "main"
 optional = false
@@ -244,21 +350,86 @@ mccabe = ">=0.6.0,<0.7.0"
 pycodestyle = ">=2.8.0,<2.9.0"
 pyflakes = ">=2.4.0,<2.5.0"
 
+[[package]]
+name = "flake8-bandit"
+version = "2.1.2"
+description = "Automated security testing with bandit and flake8."
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+bandit = "*"
+flake8 = "*"
+flake8-polyfill = "*"
+pycodestyle = "*"
+
+[[package]]
+name = "flake8-bugbear"
+version = "22.1.11"
+description = "A plugin for flake8 finding likely bugs and design problems in your program. Contains warnings that don't belong in pyflakes and pycodestyle."
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+attrs = ">=19.2.0"
+flake8 = ">=3.0.0"
+
+[package.extras]
+dev = ["coverage", "hypothesis", "hypothesmith (>=0.2)", "pre-commit"]
+
+[[package]]
+name = "flake8-docstrings"
+version = "1.6.0"
+description = "Extension for flake8 which uses pydocstyle to check docstrings"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+flake8 = ">=3"
+pydocstyle = ">=2.1"
+
+[[package]]
+name = "flake8-polyfill"
+version = "1.0.2"
+description = "Polyfill package for Flake8 plugins"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+flake8 = "*"
+
+[[package]]
+name = "flake8-rst-docstrings"
+version = "0.2.5"
+description = "Python docstring reStructuredText (RST) validator"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+flake8 = ">=3.0.0"
+pygments = "*"
+restructuredtext-lint = "*"
+
 [[package]]
 name = "frozenlist"
-version = "1.2.0"
+version = "1.3.0"
 description = "A list-like structure which implements collections.abc.MutableSequence"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "fsspec"
-version = "2022.1.0"
+version = "2022.2.0"
 description = "File-system specification"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 aiohttp = {version = "*", optional = true, markers = "extra == \"http\""}
@@ -286,6 +457,19 @@ sftp = ["paramiko"]
 smb = ["smbprotocol"]
 ssh = ["paramiko"]
 
+[[package]]
+name = "furo"
+version = "2022.2.23"
+description = "A clean customisable Sphinx documentation theme."
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+beautifulsoup4 = "*"
+pygments = ">=2.7,<3.0"
+sphinx = ">=4.0,<5.0"
+
 [[package]]
 name = "future"
 version = "0.18.2"
@@ -294,16 +478,38 @@ category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 
+[[package]]
+name = "gitdb"
+version = "4.0.9"
+description = "Git Object Database"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+smmap = ">=3.0.1,<6"
+
+[[package]]
+name = "gitpython"
+version = "3.1.27"
+description = "GitPython is a python library used to interact with Git repositories"
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+gitdb = ">=4.0.1,<5"
+
 [[package]]
 name = "google-auth"
-version = "2.3.3"
+version = "2.6.0"
 description = "Google Authentication Library"
 category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
 
 [package.dependencies]
-cachetools = ">=2.0.0,<5.0"
+cachetools = ">=2.0.0,<6.0"
 pyasn1-modules = ">=0.2.1"
 rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""}
 six = ">=1.9.0"
@@ -330,7 +536,7 @@ tool = ["click (>=6.0.0)"]
 
 [[package]]
 name = "grpcio"
-version = "1.43.0"
+version = "1.44.0"
 description = "HTTP/2-based RPC framework"
 category = "main"
 optional = false
@@ -340,7 +546,7 @@ python-versions = ">=3.6"
 six = ">=1.5.2"
 
 [package.extras]
-protobuf = ["grpcio-tools (>=1.43.0)"]
+protobuf = ["grpcio-tools (>=1.44.0)"]
 
 [[package]]
 name = "huggingface-hub"
@@ -368,11 +574,11 @@ torch = ["torch"]
 
 [[package]]
 name = "identify"
-version = "2.4.1"
+version = "2.4.11"
 description = "File identification library for Python"
 category = "dev"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.7"
 
 [package.extras]
 license = ["ukkonen"]
@@ -385,9 +591,17 @@ category = "main"
 optional = false
 python-versions = ">=3.5"
 
+[[package]]
+name = "imagesize"
+version = "1.3.0"
+description = "Getting image size from png/jpeg/jpeg2000/gif file"
+category = "dev"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+
 [[package]]
 name = "importlib-metadata"
-version = "4.10.0"
+version = "4.11.1"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
@@ -399,7 +613,7 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
 perf = ["ipython"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
 
 [[package]]
 name = "iniconfig"
@@ -423,6 +637,20 @@ requirements_deprecated_finder = ["pipreqs", "pip-api"]
 colors = ["colorama (>=0.4.3,<0.5.0)"]
 plugins = ["setuptools"]
 
+[[package]]
+name = "jinja2"
+version = "3.0.3"
+description = "A very fast and expressive template engine."
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+MarkupSafe = ">=2.0"
+
+[package.extras]
+i18n = ["Babel (>=2.7)"]
+
 [[package]]
 name = "joblib"
 version = "1.1.0"
@@ -431,6 +659,18 @@ category = "main"
 optional = false
 python-versions = ">=3.6"
 
+[[package]]
+name = "livereload"
+version = "2.6.3"
+description = "Python LiveReload is an awesome tool for web developers"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+six = "*"
+tornado = {version = "*", markers = "python_version > \"2.7\""}
+
 [[package]]
 name = "markdown"
 version = "3.3.6"
@@ -445,6 +685,35 @@ importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 [package.extras]
 testing = ["coverage", "pyyaml"]
 
+[[package]]
+name = "markdown-it-py"
+version = "2.0.1"
+description = "Python port of markdown-it. Markdown parsing, done right!"
+category = "dev"
+optional = false
+python-versions = "~=3.6"
+
+[package.dependencies]
+attrs = ">=19,<22"
+mdurl = ">=0.1,<1.0"
+
+[package.extras]
+benchmarking = ["psutil", "pytest", "pytest-benchmark (>=3.2,<4.0)"]
+code_style = ["pre-commit (==2.6)"]
+compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.2.2,<3.3.0)", "mistletoe-ebp (>=0.10.0,<0.11.0)", "mistune (>=0.8.4,<0.9.0)", "panflute (>=1.12,<2.0)"]
+linkify = ["linkify-it-py (>=1.0,<2.0)"]
+plugins = ["mdit-py-plugins"]
+rtd = ["myst-nb (==0.13.0a1)", "pyyaml", "sphinx (>=2,<4)", "sphinx-copybutton", "sphinx-panels (>=0.4.0,<0.5.0)", "sphinx-book-theme"]
+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+
+[[package]]
+name = "markupsafe"
+version = "2.1.0"
+description = "Safely add untrusted strings to HTML/XML markup."
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+
 [[package]]
 name = "mccabe"
 version = "0.6.1"
@@ -453,13 +722,37 @@ category = "dev"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "mdit-py-plugins"
+version = "0.3.0"
+description = "Collection of plugins for markdown-it-py"
+category = "dev"
+optional = false
+python-versions = "~=3.6"
+
+[package.dependencies]
+markdown-it-py = ">=1.0.0,<3.0.0"
+
+[package.extras]
+code_style = ["pre-commit (==2.6)"]
+rtd = ["myst-parser (>=0.14.0,<0.15.0)", "sphinx-book-theme (>=0.1.0,<0.2.0)"]
+testing = ["coverage", "pytest (>=3.6,<4)", "pytest-cov", "pytest-regressions"]
+
+[[package]]
+name = "mdurl"
+version = "0.1.0"
+description = "Markdown URL utilities"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
 [[package]]
 name = "multidict"
-version = "5.2.0"
+version = "6.0.2"
 description = "multidict implementation"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "multiprocess"
@@ -474,7 +767,7 @@ dill = ">=0.3.4"
 
 [[package]]
 name = "mypy"
-version = "0.930"
+version = "0.931"
 description = "Optional static typing for Python"
 category = "dev"
 optional = false
@@ -497,6 +790,29 @@ category = "dev"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "myst-parser"
+version = "0.17.0"
+description = "An extended commonmark compliant parser, with bridges to docutils & sphinx."
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+docutils = ">=0.15,<0.18"
+jinja2 = "*"
+markdown-it-py = ">=1.0.0,<3.0.0"
+mdit-py-plugins = ">=0.3.0,<0.4.0"
+pyyaml = "*"
+sphinx = ">=3.1,<5"
+typing-extensions = "*"
+
+[package.extras]
+code_style = ["pre-commit (>=2.12,<3.0)"]
+linkify = ["linkify-it-py (>=1.0,<2.0)"]
+rtd = ["ipython", "sphinx-book-theme (>=0.1.0,<0.2.0)", "sphinx-panels (>=0.5.2,<0.6.0)", "sphinxcontrib-bibtex (>=2.1,<3.0)", "sphinxext-rediraffe (>=0.2,<1.0)", "sphinxcontrib.mermaid (>=0.6.3,<0.7.0)", "sphinxext-opengraph (>=0.4.2,<0.5.0)"]
+testing = ["beautifulsoup4", "coverage", "docutils (>=0.17.0,<0.18.0)", "pytest (>=6,<7)", "pytest-cov", "pytest-regressions", "pytest-param-files (>=0.3.4,<0.4.0)"]
+
 [[package]]
 name = "nodeenv"
 version = "1.6.0"
@@ -505,9 +821,40 @@ category = "dev"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "nox"
+version = "2022.1.7"
+description = "Flexible test automation."
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+argcomplete = ">=1.9.4,<2.0"
+colorlog = ">=2.6.1,<7.0.0"
+packaging = ">=20.9"
+py = ">=1.4.0,<2.0.0"
+virtualenv = ">=14.0.0"
+
+[package.extras]
+tox_to_nox = ["jinja2", "tox"]
+
+[[package]]
+name = "nox-poetry"
+version = "0.9.0"
+description = "nox-poetry"
+category = "dev"
+optional = false
+python-versions = ">=3.7,<4.0"
+
+[package.dependencies]
+nox = ">=2020.8.22"
+packaging = ">=20.9"
+tomlkit = ">=0.7.0,<0.8.0"
+
 [[package]]
 name = "numpy"
-version = "1.22.0"
+version = "1.22.2"
 description = "NumPy is the fundamental package for array computing with Python."
 category = "main"
 optional = false
@@ -515,16 +862,16 @@ python-versions = ">=3.8"
 
 [[package]]
 name = "oauthlib"
-version = "3.1.1"
+version = "3.2.0"
 description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-rsa = ["cryptography (>=3.0.0,<4)"]
+rsa = ["cryptography (>=3.0.0)"]
 signals = ["blinker (>=1.4.0)"]
-signedtoken = ["cryptography (>=3.0.0,<4)", "pyjwt (>=2.0.0,<3)"]
+signedtoken = ["cryptography (>=3.0.0)", "pyjwt (>=2.0.0,<3)"]
 
 [[package]]
 name = "packaging"
@@ -539,24 +886,24 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
 [[package]]
 name = "pandas"
-version = "1.3.5"
+version = "1.4.1"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
-python-versions = ">=3.7.1"
+python-versions = ">=3.8"
 
 [package.dependencies]
 numpy = [
-    {version = ">=1.17.3", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""},
+    {version = ">=1.18.5", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""},
     {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""},
     {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""},
     {version = ">=1.21.0", markers = "python_version >= \"3.10\""},
 ]
-python-dateutil = ">=2.7.3"
-pytz = ">=2017.3"
+python-dateutil = ">=2.8.1"
+pytz = ">=2020.1"
 
 [package.extras]
-test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"]
+test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"]
 
 [[package]]
 name = "pathspec"
@@ -566,9 +913,29 @@ category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
+[[package]]
+name = "pbr"
+version = "5.8.1"
+description = "Python Build Reasonableness"
+category = "dev"
+optional = false
+python-versions = ">=2.6"
+
+[[package]]
+name = "pep8-naming"
+version = "0.12.1"
+description = "Check PEP-8 naming conventions, plugin for flake8"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+flake8 = ">=3.9.1"
+flake8-polyfill = ">=1.0.2,<2"
+
 [[package]]
 name = "platformdirs"
-version = "2.4.1"
+version = "2.5.1"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
@@ -592,7 +959,7 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "pre-commit"
-version = "2.16.0"
+version = "2.17.0"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 category = "dev"
 optional = false
@@ -606,9 +973,21 @@ pyyaml = ">=5.1"
 toml = "*"
 virtualenv = ">=20.0.8"
 
+[[package]]
+name = "pre-commit-hooks"
+version = "4.1.0"
+description = "Some out-of-the-box hooks for pre-commit."
+category = "dev"
+optional = false
+python-versions = ">=3.6.1"
+
+[package.dependencies]
+"ruamel.yaml" = ">=0.15"
+toml = "*"
+
 [[package]]
 name = "protobuf"
-version = "3.19.1"
+version = "3.19.4"
 description = "Protocol Buffers"
 category = "main"
 optional = false
@@ -624,11 +1003,11 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "pyarrow"
-version = "6.0.1"
+version = "7.0.0"
 description = "Python library for Apache Arrow"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 numpy = ">=1.16.6"
@@ -668,6 +1047,20 @@ category = "main"
 optional = false
 python-versions = ">=3.6"
 
+[[package]]
+name = "pydocstyle"
+version = "6.1.1"
+description = "Python docstring style checker"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+snowballstemmer = "*"
+
+[package.extras]
+toml = ["toml"]
+
 [[package]]
 name = "pyflakes"
 version = "2.4.0"
@@ -676,9 +1069,17 @@ category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
+[[package]]
+name = "pygments"
+version = "2.11.2"
+description = "Pygments is a syntax highlighting package written in Python."
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
 [[package]]
 name = "pyparsing"
-version = "3.0.6"
+version = "3.0.7"
 description = "Python parsing module"
 category = "main"
 optional = false
@@ -689,7 +1090,7 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pytest"
-version = "6.2.5"
+version = "7.0.1"
 description = "pytest: simple powerful testing with Python"
 category = "dev"
 optional = false
@@ -703,25 +1104,10 @@ iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<2.0"
 py = ">=1.8.2"
-toml = "*"
+tomli = ">=1.0.0"
 
 [package.extras]
-testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
-
-[[package]]
-name = "pytest-cov"
-version = "3.0.0"
-description = "Pytest plugin for measuring coverage."
-category = "dev"
-optional = false
-python-versions = ">=3.6"
-
-[package.dependencies]
-coverage = {version = ">=5.2.1", extras = ["toml"]}
-pytest = ">=4.6"
-
-[package.extras]
-testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"]
+testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
 
 [[package]]
 name = "python-dateutil"
@@ -736,7 +1122,7 @@ six = ">=1.5"
 
 [[package]]
 name = "pytorch-lightning"
-version = "1.5.7"
+version = "1.5.10"
 description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate."
 category = "main"
 optional = false
@@ -756,14 +1142,14 @@ tqdm = ">=4.41.0"
 typing-extensions = "*"
 
 [package.extras]
-all = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)", "neptune-client (>=0.10.0)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-rerunfailures (>=10.2)", "twine (==3.2)", "mypy (>=0.920)", "flake8 (>=3.9.2)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "onnxruntime", "pandas", "torchvision (>=0.8)", "gym (>=0.17.0)", "ipython"]
-cpu = ["matplotlib (>3.1)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)", "neptune-client (>=0.10.0)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-rerunfailures (>=10.2)", "twine (==3.2)", "mypy (>=0.920)", "flake8 (>=3.9.2)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "onnxruntime", "pandas", "torchvision (>=0.8)", "gym (>=0.17.0)", "ipython"]
-cpu-extra = ["matplotlib (>3.1)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)"]
-dev = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)", "neptune-client (>=0.10.0)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-rerunfailures (>=10.2)", "twine (==3.2)", "mypy (>=0.920)", "flake8 (>=3.9.2)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "onnxruntime", "pandas"]
+all = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4,<5.0.0)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)", "neptune-client (>=0.10.0)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0,<6.3)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-rerunfailures (>=10.2)", "twine (==3.2)", "mypy (>=0.920)", "flake8 (>=3.9.2)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "onnxruntime", "pandas", "torchvision (>=0.8)", "gym (>=0.17.0)", "ipython"]
+cpu = ["matplotlib (>3.1)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4,<5.0.0)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)", "neptune-client (>=0.10.0)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0,<6.3)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-rerunfailures (>=10.2)", "twine (==3.2)", "mypy (>=0.920)", "flake8 (>=3.9.2)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "onnxruntime", "pandas", "torchvision (>=0.8)", "gym (>=0.17.0)", "ipython"]
+cpu-extra = ["matplotlib (>3.1)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4,<5.0.0)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)"]
+dev = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4,<5.0.0)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)", "neptune-client (>=0.10.0)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0,<6.3)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-rerunfailures (>=10.2)", "twine (==3.2)", "mypy (>=0.920)", "flake8 (>=3.9.2)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "onnxruntime", "pandas"]
 examples = ["torchvision (>=0.8)", "gym (>=0.17.0)", "ipython"]
-extra = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)"]
+extra = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "torchtext (>=0.8)", "omegaconf (>=2.0.5)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.0.4,<5.0.0)", "gcsfs (>=2021.5.0)", "rich (>=10.2.2)"]
 loggers = ["neptune-client (>=0.10.0)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)"]
-test = ["coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-rerunfailures (>=10.2)", "twine (==3.2)", "mypy (>=0.920)", "flake8 (>=3.9.2)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "onnxruntime", "pandas"]
+test = ["coverage (>5.2.0,<6.3)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-rerunfailures (>=10.2)", "twine (==3.2)", "mypy (>=0.920)", "flake8 (>=3.9.2)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "onnxruntime", "pandas"]
 
 [[package]]
 name = "pytz"
@@ -773,6 +1159,17 @@ category = "main"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "pyupgrade"
+version = "2.31.0"
+description = "A tool to automatically upgrade syntax for newer versions."
+category = "dev"
+optional = false
+python-versions = ">=3.6.1"
+
+[package.dependencies]
+tokenize-rt = ">=3.2.0"
+
 [[package]]
 name = "pyyaml"
 version = "6.0"
@@ -783,7 +1180,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "regex"
-version = "2021.11.10"
+version = "2022.1.18"
 description = "Alternative regular expression module, to replace re."
 category = "main"
 optional = false
@@ -791,7 +1188,7 @@ python-versions = "*"
 
 [[package]]
 name = "requests"
-version = "2.26.0"
+version = "2.27.1"
 description = "Python HTTP for Humans."
 category = "main"
 optional = false
@@ -809,7 +1206,7 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
 
 [[package]]
 name = "requests-oauthlib"
-version = "1.3.0"
+version = "1.3.1"
 description = "OAuthlib authentication support for Requests."
 category = "main"
 optional = false
@@ -822,6 +1219,17 @@ requests = ">=2.0.0"
 [package.extras]
 rsa = ["oauthlib[signedtoken] (>=3.0.0)"]
 
+[[package]]
+name = "restructuredtext-lint"
+version = "1.4.0"
+description = "reStructuredText linter"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+docutils = ">=0.11,<1.0"
+
 [[package]]
 name = "rsa"
 version = "4.8"
@@ -833,9 +1241,32 @@ python-versions = ">=3.6,<4"
 [package.dependencies]
 pyasn1 = ">=0.1.3"
 
+[[package]]
+name = "ruamel.yaml"
+version = "0.17.21"
+description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
+category = "dev"
+optional = false
+python-versions = ">=3"
+
+[package.dependencies]
+"ruamel.yaml.clib" = {version = ">=0.2.6", markers = "platform_python_implementation == \"CPython\" and python_version < \"3.11\""}
+
+[package.extras]
+docs = ["ryd"]
+jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
+
+[[package]]
+name = "ruamel.yaml.clib"
+version = "0.2.6"
+description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
 [[package]]
 name = "sacremoses"
-version = "0.0.46"
+version = "0.0.47"
 description = "SacreMoses"
 category = "main"
 optional = false
@@ -848,6 +1279,20 @@ regex = "*"
 six = "*"
 tqdm = "*"
 
+[[package]]
+name = "safety"
+version = "1.10.3"
+description = "Checks installed dependencies for known vulnerabilities."
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.dependencies]
+Click = ">=6.0"
+dparse = ">=0.5.1"
+packaging = "*"
+requests = "*"
+
 [[package]]
 name = "sh"
 version = "1.14.2"
@@ -864,9 +1309,176 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 
+[[package]]
+name = "smmap"
+version = "5.0.0"
+description = "A pure Python implementation of a sliding window memory map manager"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "snowballstemmer"
+version = "2.2.0"
+description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms."
+category = "dev"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "soupsieve"
+version = "2.3.1"
+description = "A modern CSS selector implementation for Beautiful Soup."
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "sphinx"
+version = "4.4.0"
+description = "Python documentation generator"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+alabaster = ">=0.7,<0.8"
+babel = ">=1.3"
+colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""}
+docutils = ">=0.14,<0.18"
+imagesize = "*"
+importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
+Jinja2 = ">=2.3"
+packaging = "*"
+Pygments = ">=2.0"
+requests = ">=2.5.0"
+snowballstemmer = ">=1.1"
+sphinxcontrib-applehelp = "*"
+sphinxcontrib-devhelp = "*"
+sphinxcontrib-htmlhelp = ">=2.0.0"
+sphinxcontrib-jsmath = "*"
+sphinxcontrib-qthelp = "*"
+sphinxcontrib-serializinghtml = ">=1.1.5"
+
+[package.extras]
+docs = ["sphinxcontrib-websupport"]
+lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "docutils-stubs", "types-typed-ast", "types-requests"]
+test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"]
+
+[[package]]
+name = "sphinx-autobuild"
+version = "2021.3.14"
+description = "Rebuild Sphinx documentation on changes, with live-reload in the browser."
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+colorama = "*"
+livereload = "*"
+sphinx = "*"
+
+[package.extras]
+test = ["pytest", "pytest-cov"]
+
+[[package]]
+name = "sphinx-click"
+version = "3.1.0"
+description = "Sphinx extension that automatically documents click applications"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+click = ">=7.0"
+docutils = "*"
+sphinx = ">=2.0"
+
+[[package]]
+name = "sphinxcontrib-applehelp"
+version = "1.0.2"
+description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books"
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.extras]
+lint = ["flake8", "mypy", "docutils-stubs"]
+test = ["pytest"]
+
+[[package]]
+name = "sphinxcontrib-devhelp"
+version = "1.0.2"
+description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document."
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.extras]
+lint = ["flake8", "mypy", "docutils-stubs"]
+test = ["pytest"]
+
+[[package]]
+name = "sphinxcontrib-htmlhelp"
+version = "2.0.0"
+description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.extras]
+lint = ["flake8", "mypy", "docutils-stubs"]
+test = ["pytest", "html5lib"]
+
+[[package]]
+name = "sphinxcontrib-jsmath"
+version = "1.0.1"
+description = "A sphinx extension which renders display math in HTML via JavaScript"
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.extras]
+test = ["pytest", "flake8", "mypy"]
+
+[[package]]
+name = "sphinxcontrib-qthelp"
+version = "1.0.3"
+description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document."
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.extras]
+lint = ["flake8", "mypy", "docutils-stubs"]
+test = ["pytest"]
+
+[[package]]
+name = "sphinxcontrib-serializinghtml"
+version = "1.1.5"
+description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)."
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.extras]
+lint = ["flake8", "mypy", "docutils-stubs"]
+test = ["pytest"]
+
+[[package]]
+name = "stevedore"
+version = "3.5.0"
+description = "Manage dynamic plugins for Python applications"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+pbr = ">=2.0.0,<2.1.0 || >2.1.0"
+
 [[package]]
 name = "tensorboard"
-version = "2.7.0"
+version = "2.8.0"
 description = "TensorBoard lets you watch Tensors Flow"
 category = "main"
 optional = false
@@ -895,22 +1507,31 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "tensorboard-plugin-wit"
-version = "1.8.0"
+version = "1.8.1"
 description = "What-If Tool TensorBoard plugin."
 category = "main"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "tokenize-rt"
+version = "4.2.1"
+description = "A wrapper around the stdlib `tokenize` which roundtrips."
+category = "dev"
+optional = false
+python-versions = ">=3.6.1"
+
 [[package]]
 name = "tokenizers"
-version = "0.10.3"
+version = "0.11.5"
 description = "Fast and Customizable Tokenizers"
 category = "main"
 optional = false
 python-versions = "*"
 
 [package.extras]
-testing = ["pytest"]
+docs = ["sphinx", "sphinx-rtd-theme", "setuptools-rust"]
+testing = ["pytest", "requests", "numpy", "datasets"]
 
 [[package]]
 name = "toml"
@@ -922,15 +1543,23 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 
 [[package]]
 name = "tomli"
-version = "1.2.3"
+version = "2.0.1"
 description = "A lil' TOML parser"
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
+
+[[package]]
+name = "tomlkit"
+version = "0.7.2"
+description = "Style preserving TOML library"
+category = "dev"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "torch"
-version = "1.10.1"
+version = "1.10.2"
 description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration"
 category = "main"
 optional = false
@@ -962,6 +1591,14 @@ integrate = ["pytorch-lightning (>=1.0)"]
 test = ["check-manifest", "transformers (>=4.0)", "scikit-learn (>=0.24)", "pypesq", "coverage (>5.2)", "bert-score (==0.3.10)", "flake8", "phmdoctest (>=1.1.1)", "cloudpickle (>=1.3)", "mypy (>=0.790)", "pre-commit (>=1.0)", "jiwer (>=2.3.0)", "rouge-score (>=0.0.4)", "pytest (>=6.0)", "twine (>=3.2)", "pytest-cov (>2.10)", "scikit-image (>0.17.1)", "isort (>=5.0)", "mir-eval (>=0.6)", "codecov (>=2.1)", "sacrebleu (>=2.0.0)"]
 text = ["regex (>=2021.9.24)", "nltk (>=3.6)", "tqdm (>=4.41.0)"]
 
+[[package]]
+name = "tornado"
+version = "6.1"
+description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
+category = "dev"
+optional = false
+python-versions = ">= 3.5"
+
 [[package]]
 name = "tqdm"
 version = "4.62.3"
@@ -980,7 +1617,7 @@ telegram = ["requests"]
 
 [[package]]
 name = "transformers"
-version = "4.15.0"
+version = "4.16.2"
 description = "State-of-the-art Natural Language Processing for TensorFlow 2.0 and PyTorch"
 category = "main"
 optional = false
@@ -995,23 +1632,23 @@ pyyaml = ">=5.1"
 regex = "!=2019.12.17"
 requests = "*"
 sacremoses = "*"
-tokenizers = ">=0.10.1,<0.11"
+tokenizers = ">=0.10.1,<0.11.3 || >0.11.3"
 tqdm = ">=4.27"
 
 [package.extras]
-all = ["tensorflow (>=2.3)", "onnxconverter-common", "keras2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.5)", "optax (>=0.0.8)", "sentencepiece (>=0.1.91,!=0.1.92)", "protobuf", "tokenizers (>=0.10.1,<0.11)", "torchaudio", "librosa", "pyctcdecode (>=0.2.0)", "phonemizer", "pillow", "optuna", "ray", "sigopt", "timm", "codecarbon (==1.2.0)"]
-audio = ["librosa", "pyctcdecode (>=0.2.0)", "phonemizer"]
+all = ["tensorflow (>=2.3)", "onnxconverter-common", "tf2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.5)", "optax (>=0.0.8)", "sentencepiece (>=0.1.91,!=0.1.92)", "protobuf", "tokenizers (>=0.10.1,!=0.11.3)", "torchaudio", "librosa", "pyctcdecode (>=0.3.0)", "phonemizer", "pillow", "optuna", "ray", "sigopt", "timm", "codecarbon (==1.2.0)"]
+audio = ["librosa", "pyctcdecode (>=0.3.0)", "phonemizer"]
 codecarbon = ["codecarbon (==1.2.0)"]
 deepspeed = ["deepspeed (>=0.5.7)"]
-dev = ["tensorflow (>=2.3)", "onnxconverter-common", "keras2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.5)", "optax (>=0.0.8)", "sentencepiece (>=0.1.91,!=0.1.92)", "protobuf", "tokenizers (>=0.10.1,<0.11)", "torchaudio", "librosa", "pyctcdecode (>=0.2.0)", "phonemizer", "pillow", "optuna", "ray", "sigopt", "timm", "codecarbon (==1.2.0)", "pytest", "pytest-xdist", "timeout-decorator", "parameterized", "psutil", "datasets", "pytest-timeout", "black (==21.4b0)", "sacrebleu (>=1.4.12,<2.0.0)", "rouge-score", "nltk", "GitPython (<3.1.19)", "faiss-cpu", "cookiecutter (==1.7.2)", "isort (>=5.5.4)", "flake8 (>=3.8.3)", "fugashi (>=1.0)", "ipadic (>=1.0.0,<2.0)", "unidic-lite (>=1.0.7)", "unidic (>=1.0.2)", "scikit-learn"]
-docs = ["tensorflow (>=2.3)", "onnxconverter-common", "keras2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.5)", "optax (>=0.0.8)", "sentencepiece (>=0.1.91,!=0.1.92)", "protobuf", "tokenizers (>=0.10.1,<0.11)", "torchaudio", "librosa", "pyctcdecode (>=0.2.0)", "phonemizer", "pillow", "optuna", "ray", "sigopt", "timm", "codecarbon (==1.2.0)"]
+dev = ["tensorflow (>=2.3)", "onnxconverter-common", "tf2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.5)", "optax (>=0.0.8)", "sentencepiece (>=0.1.91,!=0.1.92)", "protobuf", "tokenizers (>=0.10.1,!=0.11.3)", "torchaudio", "librosa", "pyctcdecode (>=0.3.0)", "phonemizer", "pillow", "optuna", "ray", "sigopt", "timm", "codecarbon (==1.2.0)", "pytest", "pytest-xdist", "timeout-decorator", "parameterized", "psutil", "datasets", "pytest-timeout", "black (==21.4b0)", "sacrebleu (>=1.4.12,<2.0.0)", "rouge-score", "nltk", "GitPython (<3.1.19)", "faiss-cpu", "cookiecutter (==1.7.2)", "isort (>=5.5.4)", "flake8 (>=3.8.3)", "fugashi (>=1.0)", "ipadic (>=1.0.0,<2.0)", "unidic-lite (>=1.0.7)", "unidic (>=1.0.2)", "scikit-learn"]
+docs = ["tensorflow (>=2.3)", "onnxconverter-common", "tf2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.5)", "optax (>=0.0.8)", "sentencepiece (>=0.1.91,!=0.1.92)", "protobuf", "tokenizers (>=0.10.1,!=0.11.3)", "torchaudio", "librosa", "pyctcdecode (>=0.3.0)", "phonemizer", "pillow", "optuna", "ray", "sigopt", "timm", "codecarbon (==1.2.0)"]
 fairscale = ["fairscale (>0.3)"]
 flax = ["jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.5)", "optax (>=0.0.8)"]
-flax-speech = ["librosa", "pyctcdecode (>=0.2.0)", "phonemizer"]
+flax-speech = ["librosa", "pyctcdecode (>=0.3.0)", "phonemizer"]
 integrations = ["optuna", "ray", "sigopt"]
 ja = ["fugashi (>=1.0)", "ipadic (>=1.0.0,<2.0)", "unidic-lite (>=1.0.7)", "unidic (>=1.0.2)"]
 modelcreation = ["cookiecutter (==1.7.2)"]
-onnx = ["onnxconverter-common", "keras2onnx", "onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)"]
+onnx = ["onnxconverter-common", "tf2onnx", "onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)"]
 onnxruntime = ["onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)"]
 optuna = ["optuna"]
 quality = ["black (==21.4b0)", "isort (>=5.5.4)", "flake8 (>=3.8.3)", "GitPython (<3.1.19)"]
@@ -1022,21 +1659,33 @@ sentencepiece = ["sentencepiece (>=0.1.91,!=0.1.92)", "protobuf"]
 serving = ["pydantic", "uvicorn", "fastapi", "starlette"]
 sigopt = ["sigopt"]
 sklearn = ["scikit-learn"]
-speech = ["torchaudio", "librosa", "pyctcdecode (>=0.2.0)", "phonemizer"]
+speech = ["torchaudio", "librosa", "pyctcdecode (>=0.3.0)", "phonemizer"]
 testing = ["pytest", "pytest-xdist", "timeout-decorator", "parameterized", "psutil", "datasets", "pytest-timeout", "black (==21.4b0)", "sacrebleu (>=1.4.12,<2.0.0)", "rouge-score", "nltk", "GitPython (<3.1.19)", "faiss-cpu", "cookiecutter (==1.7.2)"]
-tf = ["tensorflow (>=2.3)", "onnxconverter-common", "keras2onnx"]
-tf-cpu = ["tensorflow-cpu (>=2.3)", "onnxconverter-common", "keras2onnx"]
-tf-speech = ["librosa", "pyctcdecode (>=0.2.0)", "phonemizer"]
+tf = ["tensorflow (>=2.3)", "onnxconverter-common", "tf2onnx"]
+tf-cpu = ["tensorflow-cpu (>=2.3)", "onnxconverter-common", "tf2onnx"]
+tf-speech = ["librosa", "pyctcdecode (>=0.3.0)", "phonemizer"]
 timm = ["timm"]
-tokenizers = ["tokenizers (>=0.10.1,<0.11)"]
+tokenizers = ["tokenizers (>=0.10.1,!=0.11.3)"]
 torch = ["torch (>=1.0)"]
-torch-speech = ["torchaudio", "librosa", "pyctcdecode (>=0.2.0)", "phonemizer"]
-torchhub = ["filelock", "huggingface-hub (>=0.1.0,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf", "regex (!=2019.12.17)", "requests", "sacremoses", "sentencepiece (>=0.1.91,!=0.1.92)", "torch (>=1.0)", "tokenizers (>=0.10.1,<0.11)", "tqdm (>=4.27)"]
+torch-speech = ["torchaudio", "librosa", "pyctcdecode (>=0.3.0)", "phonemizer"]
+torchhub = ["filelock", "huggingface-hub (>=0.1.0,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf", "regex (!=2019.12.17)", "requests", "sacremoses", "sentencepiece (>=0.1.91,!=0.1.92)", "torch (>=1.0)", "tokenizers (>=0.10.1,!=0.11.3)", "tqdm (>=4.27)"]
 vision = ["pillow"]
 
+[[package]]
+name = "typeguard"
+version = "2.13.3"
+description = "Run-time type checker for Python"
+category = "dev"
+optional = false
+python-versions = ">=3.5.3"
+
+[package.extras]
+doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"]
+test = ["pytest", "typing-extensions", "mypy"]
+
 [[package]]
 name = "types-requests"
-version = "2.27.7"
+version = "2.27.11"
 description = "Typing stubs for requests"
 category = "dev"
 optional = false
@@ -1047,7 +1696,7 @@ types-urllib3 = "<1.27"
 
 [[package]]
 name = "types-urllib3"
-version = "1.26.7"
+version = "1.26.9"
 description = "Typing stubs for urllib3"
 category = "dev"
 optional = false
@@ -1055,7 +1704,7 @@ python-versions = "*"
 
 [[package]]
 name = "typing-extensions"
-version = "4.0.1"
+version = "4.1.1"
 description = "Backported and Experimental Type Hints for Python 3.6+"
 category = "main"
 optional = false
@@ -1063,7 +1712,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "urllib3"
-version = "1.26.7"
+version = "1.26.8"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
 optional = false
@@ -1076,7 +1725,7 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.12.1"
+version = "20.13.2"
 description = "Virtual Python Environment builder"
 category = "dev"
 optional = false
@@ -1094,7 +1743,7 @@ testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)",
 
 [[package]]
 name = "werkzeug"
-version = "2.0.2"
+version = "2.0.3"
 description = "The comprehensive WSGI web application library."
 category = "main"
 optional = false
@@ -1103,6 +1752,26 @@ python-versions = ">=3.6"
 [package.extras]
 watchdog = ["watchdog"]
 
+[[package]]
+name = "xdoctest"
+version = "0.15.10"
+description = "A rewrite of the builtin doctest module"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+colorama = {version = "*", optional = true, markers = "platform_system == \"Windows\" and extra == \"colors\""}
+Pygments = {version = "*", optional = true, markers = "extra == \"colors\""}
+six = "*"
+
+[package.extras]
+all = ["six", "codecov", "scikit-build", "cmake", "ninja", "pybind11", "pygments", "colorama", "pytest", "pytest", "pytest-cov", "pytest", "pytest", "pytest-cov", "typing", "nbformat", "nbconvert", "jupyter-client", "ipython", "ipykernel", "pytest", "pytest-cov"]
+colors = ["pygments", "colorama"]
+jupyter = ["nbformat", "nbconvert", "jupyter-client", "ipython", "ipykernel"]
+optional = ["pygments", "colorama", "nbformat", "nbconvert", "jupyter-client", "ipython", "ipykernel"]
+tests = ["codecov", "scikit-build", "cmake", "ninja", "pybind11", "pytest", "pytest", "pytest-cov", "pytest", "pytest", "pytest-cov", "typing", "nbformat", "nbconvert", "jupyter-client", "ipython", "ipykernel", "pytest", "pytest-cov"]
+
 [[package]]
 name = "xxhash"
 version = "2.0.2"
@@ -1137,8 +1806,8 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-
 
 [metadata]
 lock-version = "1.1"
-python-versions = "^3.9"
-content-hash = "f85f696690919dc234077f0316be5abffa2de10e54a3d98fa9a03d7d5ee1bdaa"
+python-versions = "^3.8"
+content-hash = "bb97e8025e36fc3543981dfe7d4129ae65491588ea03b86a800bff2cfb6e7fe4"
 
 [metadata.files]
 absl-py = [
@@ -1223,6 +1892,14 @@ aiosignal = [
     {file = "aiosignal-1.2.0-py3-none-any.whl", hash = "sha256:26e62109036cd181df6e6ad646f91f0dcfd05fe16d0cb924138ff2ab75d64e3a"},
     {file = "aiosignal-1.2.0.tar.gz", hash = "sha256:78ed67db6c7b7ced4f98e495e572106d5c432a93e1ddd1bf475e1dc05f5b7df2"},
 ]
+alabaster = [
+    {file = "alabaster-0.7.12-py2.py3-none-any.whl", hash = "sha256:446438bdcca0e05bd45ea2de1668c1d9b032e1a9154c2c259092d77031ddd359"},
+    {file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"},
+]
+argcomplete = [
+    {file = "argcomplete-1.12.3-py2.py3-none-any.whl", hash = "sha256:291f0beca7fd49ce285d2f10e4c1c77e9460cf823eef2de54df0c0fec88b0d81"},
+    {file = "argcomplete-1.12.3.tar.gz", hash = "sha256:2c7dbffd8c045ea534921e63b0be6fe65e88599990d8dc408ac8c542b72a5445"},
+]
 async-timeout = [
     {file = "async-timeout-4.0.2.tar.gz", hash = "sha256:2163e1640ddb52b7a8c80d0a67a08587e5d245cc9c553a74a847056bc2976b15"},
     {file = "async_timeout-4.0.2-py3-none-any.whl", hash = "sha256:8ca1e4fcf50d07413d66d1a5e416e42cfdf5851c981d679a09851a6853383b3c"},
@@ -1235,13 +1912,46 @@ attrs = [
     {file = "attrs-21.4.0-py2.py3-none-any.whl", hash = "sha256:2d27e3784d7a565d36ab851fe94887c5eccd6a463168875832a1be79c82828b4"},
     {file = "attrs-21.4.0.tar.gz", hash = "sha256:626ba8234211db98e869df76230a137c4c40a12d72445c45d5f5b716f076e2fd"},
 ]
+babel = [
+    {file = "Babel-2.9.1-py2.py3-none-any.whl", hash = "sha256:ab49e12b91d937cd11f0b67cb259a57ab4ad2b59ac7a3b41d6c06c0ac5b0def9"},
+    {file = "Babel-2.9.1.tar.gz", hash = "sha256:bc0c176f9f6a994582230df350aa6e05ba2ebe4b3ac317eab29d9be5d2768da0"},
+]
+bandit = [
+    {file = "bandit-1.7.2-py3-none-any.whl", hash = "sha256:e20402cadfd126d85b68ed4c8862959663c8c372dbbb1fca8f8e2c9f55a067ec"},
+    {file = "bandit-1.7.2.tar.gz", hash = "sha256:6d11adea0214a43813887bfe71a377b5a9955e4c826c8ffd341b494e3ab25260"},
+]
+beautifulsoup4 = [
+    {file = "beautifulsoup4-4.10.0-py3-none-any.whl", hash = "sha256:9a315ce70049920ea4572a4055bc4bd700c940521d36fc858205ad4fcde149bf"},
+    {file = "beautifulsoup4-4.10.0.tar.gz", hash = "sha256:c23ad23c521d818955a4151a67d81580319d4bf548d3d49f4223ae041ff98891"},
+]
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 werkzeug = [
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+]
+xdoctest = [
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+    {file = "xdoctest-0.15.10.tar.gz", hash = "sha256:5f16438f2b203860e75ec594dbc38020df7524db0b41bb88467ea0a6030e6685"},
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 xxhash = [
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diff --git a/pyproject.toml b/pyproject.toml
index c0484b28..ad50a182 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,12 +1,36 @@
+[build-system]
+# requires = ["poetry-core>=1.1.0"]
+requires = ["poetry-core @ git+https://github.com/python-poetry/poetry-core.git@master"]
+build-backend = "poetry.core.masonry.api"
+
 [tool.poetry]
 name = "pytorch-ie"
 version = "0.2.0"
-description = ""
+description = "State-of-the-art Information Extraction in PyTorch"
+readme = "README.md"
 authors = ["Christoph Alt <christoph.alt@posteo.de>"]
 license = "MIT"
+homepage = "https://github.com/ChristophAlt/pytorch-ie"
+repository = "https://github.com/ChristophAlt/pytorch-ie"
+documentation = "https://pytorch-ie.readthedocs.io"
+packages = [
+    { include = "pytorch_ie"}
+]
+classifiers = [
+    "Framework :: Pytest",
+    "Framework :: tox",
+    "Framework :: Sphinx",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3 :: Only",
+    "License :: OSI Approved :: MIT License"
+]
+
+[tool.poetry.urls]
+"Bug Tracker" = "https://github.com/ChristophAlt/pytorch-ie/issues"
+"Changelog" = "https://github.com/ChristophAlt/pytorch-ie/releases"
 
 [tool.poetry.dependencies]
-python = "^3.9"
+python = "^3.8"
 pytorch-lightning = "^1.5.7"
 datasets = "^1.17.0"
 transformers = "^4.15.0"
@@ -15,29 +39,43 @@ torchmetrics = "^0.6.2"
 setuptools = "59.5.0"
 
 [tool.poetry.dev-dependencies]
-black = "^21.12b0"
-flake8 = "^4.0.1"
-isort = "^5.10.1"
-mypy = "^0.930"
-pre-commit = "^2.16.0"
-pytest = "^6.2.5"
-pytest-cov = "^3.0.0"
+Pygments = ">=2.10.0"
+black = ">=21.12b0"
+coverage = {extras = ["toml"], version = ">=6.2"}
+darglint = ">=1.8.1"
+flake8 = ">=4.0.1"
+flake8-bandit = ">=2.1.2"
+flake8-bugbear = ">=21.9.2"
+flake8-docstrings = ">=1.6.0"
+flake8-rst-docstrings = ">=0.2.5"
+furo = ">=2021.11.12"
+isort = ">=5.10.1"
+mypy = ">=0.930"
+pep8-naming = ">=0.12.1"
+pre-commit = ">=2.16.0"
+pre-commit-hooks = ">=4.1.0"
+pytest = ">=6.2.5"
+pyupgrade = ">=2.29.1"
+safety = ">=1.10.3"
+sphinx = ">=4.3.2"
+sphinx-autobuild = ">=2021.3.14"
+sphinx-click = ">=3.0.2"
+typeguard = ">=2.13.3"
+xdoctest = {extras = ["colors"], version = ">=0.15.10"}
+myst-parser = {version = ">=0.16.1"}
 sh = "^1.14.2"
 types-requests = "^2.27.7"
+nox = "^2022.1.7"
+nox-poetry = "^0.9.0"
 
-[build-system]
-# requires = ["poetry-core>=1.0.0"]
-requires = ["poetry-core @ git+https://github.com/python-poetry/poetry-core.git@master"]
-build-backend = "poetry.core.masonry.api"
+[tool.black]
+line-length = 99
+target-version = ["py38", "py39"]
 
 [tool.isort]
 profile = "black"
-multi_line_output = 3
-include_trailing_comma = true
-force_grid_wrap = 0
-use_parentheses = true
 line_length = 99
-filter_files = true
+known_first_party = ["pytorch_ie"]
 
 [tool.mypy]
 files = [
@@ -45,8 +83,26 @@ files = [
     "examples",
     "tests"
 ]
+warn_unreachable = false
+# warn_unreachable = true
+pretty = true
+show_column_numbers = true
+show_error_codes = true
+show_error_context = true
 ignore_missing_imports = true
 
+[tool.coverage.paths]
+source = ["pytorch_ie", "*/site-packages"]
+tests = ["tests", "*/tests"]
+
+[tool.coverage.run]
+branch = true
+source = ["pytorch_ie", "tests"]
+
+[tool.coverage.report]
+show_missing = true
+fail_under = 100
+
 [tool.pytest.ini_options]
 testpaths = "tests/"
 log_cli = true
@@ -62,8 +118,3 @@ filterwarnings = [
     "ignore::DeprecationWarning",
     "ignore::UserWarning"
 ]
-
-[tool.black]
-line-length = 99
-target-version = ["py39"]
-include = '\.pyi?$'
diff --git a/pytorch_ie/core/hf_hub_mixin.py b/pytorch_ie/core/hf_hub_mixin.py
index 80b74149..6eaf2dd3 100644
--- a/pytorch_ie/core/hf_hub_mixin.py
+++ b/pytorch_ie/core/hf_hub_mixin.py
@@ -4,7 +4,8 @@
 from pathlib import Path
 from typing import Any, Dict, Optional, Union
 
-import requests
+# TODO: fix ignore
+import requests  # type: ignore
 import torch
 from huggingface_hub.constants import CONFIG_NAME, PYTORCH_WEIGHTS_NAME
 from huggingface_hub.file_download import hf_hub_download
@@ -159,7 +160,7 @@ def from_pretrained(
 
         config = {}
         if config_file is not None:
-            with open(config_file, "r", encoding="utf-8") as f:
+            with open(config_file, encoding="utf-8") as f:
                 config = json.load(f)
 
         config.update(model_kwargs)
diff --git a/pytorch_ie/data/datasets/hf_datasets/ace2004.py b/pytorch_ie/data/datasets/hf_datasets/ace2004.py
index 8d098ddb..ba83aa9a 100644
--- a/pytorch_ie/data/datasets/hf_datasets/ace2004.py
+++ b/pytorch_ie/data/datasets/hf_datasets/ace2004.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import json
 import os
@@ -27,25 +26,25 @@
 
 # You can copy an official description
 _DESCRIPTION = """\
-ACE 2004 Multilingual Training Corpus contains the complete set of English, Arabic and Chinese 
-training data for the 2004 Automatic Content Extraction (ACE) technology evaluation. The corpus consists of data of 
-various types annotated for entities and relations and was created by Linguistic Data Consortium with support from 
-the ACE Program, with additional assistance from the DARPA TIDES (Translingual Information Detection, Extraction and 
-Summarization) Program. This data was previously distributed as an e-corpus (LDC2004E17) to participants in the 2004 
-ACE evaluation. 
-
-The objective of the ACE program is to develop automatic content extraction technology to support automatic 
-processing of human language in text form. In September 2004, sites were evaluated on system performance in six 
-areas: Entity Detection and Recognition (EDR), Entity Mention Detection (EMD), EDR Co-reference, Relation Detection 
-and Recognition (RDR), Relation Mention Detection (RMD), and RDR given reference entities. All tasks were evaluated 
-in three languages: English, Chinese and Arabic. 
-
-The current publication consists of the official training data for these evaluation tasks. A seventh evaluation area, 
-Timex Detection and Recognition, is supported by the ACE Time Normalization (TERN) 2004 English Training Data Corpus 
-(LDC2005T07). The TERN corpus source data largely overlaps with the English source data contained in the current 
-release. 
-
-For more information about linguistic resources for the ACE program, including annotation guidelines, 
+ACE 2004 Multilingual Training Corpus contains the complete set of English, Arabic and Chinese
+training data for the 2004 Automatic Content Extraction (ACE) technology evaluation. The corpus consists of data of
+various types annotated for entities and relations and was created by Linguistic Data Consortium with support from
+the ACE Program, with additional assistance from the DARPA TIDES (Translingual Information Detection, Extraction and
+Summarization) Program. This data was previously distributed as an e-corpus (LDC2004E17) to participants in the 2004
+ACE evaluation.
+
+The objective of the ACE program is to develop automatic content extraction technology to support automatic
+processing of human language in text form. In September 2004, sites were evaluated on system performance in six
+areas: Entity Detection and Recognition (EDR), Entity Mention Detection (EMD), EDR Co-reference, Relation Detection
+and Recognition (RDR), Relation Mention Detection (RMD), and RDR given reference entities. All tasks were evaluated
+in three languages: English, Chinese and Arabic.
+
+The current publication consists of the official training data for these evaluation tasks. A seventh evaluation area,
+Timex Detection and Recognition, is supported by the ACE Time Normalization (TERN) 2004 English Training Data Corpus
+(LDC2005T07). The TERN corpus source data largely overlaps with the English source data contained in the current
+release.
+
+For more information about linguistic resources for the ACE program, including annotation guidelines,
 task definitions, free annotation tools and other documentation, please visit LDC's ACE website:
 https://www.ldc.upenn.edu/collaborations/past-projects/ace
 """
diff --git a/pytorch_ie/data/datasets/hf_datasets/ace2005.py b/pytorch_ie/data/datasets/hf_datasets/ace2005.py
index 0206f9cd..72a5b424 100644
--- a/pytorch_ie/data/datasets/hf_datasets/ace2005.py
+++ b/pytorch_ie/data/datasets/hf_datasets/ace2005.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import json
 import os
@@ -20,22 +19,22 @@
 
 # You can copy an official description
 _DESCRIPTION = """\
-ACE 2005 Multilingual Training Corpus contains the complete set of English, Arabic and Chinese 
-training data for the 2005 Automatic Content Extraction (ACE) technology evaluation. The corpus consists of data of 
-various types annotated for entities, relations and events by the Linguistic Data Consortium (LDC) with support from 
-the ACE Program and additional assistance from LDC. 
-
-The objective of the ACE program was to develop automatic content extraction technology to support automatic 
-processing of human language in text form. 
-
-In November 2005, sites were evaluated on system performance in five primary areas: the recognition of entities, 
-values, temporal expressions, relations, and events. Entity, relation and event mention detection were also offered 
-as diagnostic tasks. All tasks with the exception of event tasks were performed for three languages, English, 
-Chinese and Arabic. Events tasks were evaluated in English and Chinese only. This release comprises the official 
-training data for these evaluation tasks. 
-
-For more information about linguistic resources for the ACE Program, including annotation guidelines, 
-task definitions and other documentation, see LDC's ACE website: 
+ACE 2005 Multilingual Training Corpus contains the complete set of English, Arabic and Chinese
+training data for the 2005 Automatic Content Extraction (ACE) technology evaluation. The corpus consists of data of
+various types annotated for entities, relations and events by the Linguistic Data Consortium (LDC) with support from
+the ACE Program and additional assistance from LDC.
+
+The objective of the ACE program was to develop automatic content extraction technology to support automatic
+processing of human language in text form.
+
+In November 2005, sites were evaluated on system performance in five primary areas: the recognition of entities,
+values, temporal expressions, relations, and events. Entity, relation and event mention detection were also offered
+as diagnostic tasks. All tasks with the exception of event tasks were performed for three languages, English,
+Chinese and Arabic. Events tasks were evaluated in English and Chinese only. This release comprises the official
+training data for these evaluation tasks.
+
+For more information about linguistic resources for the ACE Program, including annotation guidelines,
+task definitions and other documentation, see LDC's ACE website:
 http://projects.ldc.upenn.edu/ace/
 """
 
diff --git a/pytorch_ie/data/datasets/hf_datasets/brat.py b/pytorch_ie/data/datasets/hf_datasets/brat.py
index e5e3a92a..32ae39ca 100644
--- a/pytorch_ie/data/datasets/hf_datasets/brat.py
+++ b/pytorch_ie/data/datasets/hf_datasets/brat.py
@@ -277,7 +277,7 @@ def _generate_examples(self, files=None, directory=None):
                 directory is not None
             ), "If files is None, directory has to be provided, but it is also None."
             _files = glob.glob(f"{directory}/*.{self.config.ann_file_extension}")
-            files = sorted([path.splitext(fn)[0] for fn in _files])
+            files = sorted(path.splitext(fn)[0] for fn in _files)
 
         for filename in files:
             basename = path.basename(filename)
diff --git a/pytorch_ie/data/datasets/hf_datasets/chemprot.py b/pytorch_ie/data/datasets/hf_datasets/chemprot.py
index 0c7bdb8d..a02c1c24 100644
--- a/pytorch_ie/data/datasets/hf_datasets/chemprot.py
+++ b/pytorch_ie/data/datasets/hf_datasets/chemprot.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import json
 import re
@@ -21,9 +20,9 @@
 
 # You can copy an official description
 _DESCRIPTION = """\
-ChemProt is a publicly available compilation of chemical-protein-disease annotation resources that enables the study 
-of systems pharmacology for a small molecule across multiple layers of complexity from molecular to clinical levels. 
-In this third version, ChemProt has been updated to more than 1.7 million compounds with 7.8 million bioactivity 
+ChemProt is a publicly available compilation of chemical-protein-disease annotation resources that enables the study
+of systems pharmacology for a small molecule across multiple layers of complexity from molecular to clinical levels.
+In this third version, ChemProt has been updated to more than 1.7 million compounds with 7.8 million bioactivity
 measurements for 19 504 proteins.
 """
 
diff --git a/pytorch_ie/data/datasets/hf_datasets/fewrel.py b/pytorch_ie/data/datasets/hf_datasets/fewrel.py
index 1394b138..5eb73609 100644
--- a/pytorch_ie/data/datasets/hf_datasets/fewrel.py
+++ b/pytorch_ie/data/datasets/hf_datasets/fewrel.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import json
 
@@ -78,7 +77,7 @@ def __init__(
             `datasets.Value('float32')`.
           **kwargs: keyword arguments forwarded to super.
         """
-        super(FewRelConfig, self).__init__(version=datasets.Version("1.0.0", ""), **kwargs)
+        super().__init__(version=datasets.Version("1.0.0", ""), **kwargs)
         self.class_labels = class_labels
         self.data_url = data_url
         self.citation = citation
diff --git a/pytorch_ie/data/datasets/hf_datasets/genia.py b/pytorch_ie/data/datasets/hf_datasets/genia.py
index a28cefcd..93239a11 100644
--- a/pytorch_ie/data/datasets/hf_datasets/genia.py
+++ b/pytorch_ie/data/datasets/hf_datasets/genia.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import os
 
@@ -23,8 +22,8 @@
 
 # You can copy an official description
 _DESCRIPTION = """
-The GENIA corpus is the primary collection of biomedical literature compiled and annotated within the scope 
-of the GENIA project. The corpus was created to support the development and evaluation of information 
+The GENIA corpus is the primary collection of biomedical literature compiled and annotated within the scope
+of the GENIA project. The corpus was created to support the development and evaluation of information
 extraction and text mining systems for the domain of molecular biology.
 """
 
@@ -249,7 +248,7 @@ def _get_doc_ids_and_file_paths(self, path):
             for file in files:
                 if file not in ["LICENSE", "README"]:
                     list_of_files[file] = os.path.join(root, file)
-        doc_ids = list(set([file_name.split(".")[0] for file_name in list_of_files.keys()]))
+        doc_ids = list({file_name.split(".")[0] for file_name in list_of_files.keys()})
         doc_ids.sort()
         doc_ids.sort(key=len)
         return doc_ids, list_of_files
diff --git a/pytorch_ie/data/datasets/hf_datasets/ontonotes.py b/pytorch_ie/data/datasets/hf_datasets/ontonotes.py
index 609ed553..e1307e09 100644
--- a/pytorch_ie/data/datasets/hf_datasets/ontonotes.py
+++ b/pytorch_ie/data/datasets/hf_datasets/ontonotes.py
@@ -48,7 +48,7 @@ def __init__(self, **kwargs):
         Args:
           **kwargs: keyword arguments forwarded to super.
         """
-        super(OntoNotesConfig, self).__init__(**kwargs)
+        super().__init__(**kwargs)
 
 
 class OntoNotes(datasets.GeneratorBasedBuilder):
@@ -121,7 +121,7 @@ def _generate_examples(self, filepath=None):
         num_lines = sum(1 for _ in open(filepath))
         id = 0
 
-        with open(filepath, "r") as f:
+        with open(filepath) as f:
             tokens, pos_tags, dependencies, ner_tags = [], [], [], []
             for line in tqdm(f, total=num_lines):
                 line = line.strip().split()
diff --git a/pytorch_ie/data/datasets/hf_datasets/scierc.py b/pytorch_ie/data/datasets/hf_datasets/scierc.py
index bb967c21..ae140fcc 100644
--- a/pytorch_ie/data/datasets/hf_datasets/scierc.py
+++ b/pytorch_ie/data/datasets/hf_datasets/scierc.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import json
 import os
@@ -11,16 +10,16 @@
 @InProceedings{luan2018multitask,
      author = {Luan, Yi and He, Luheng and Ostendorf, Mari and Hajishirzi, Hannaneh},
      title = {Multi-Task Identification of Entities, Relations, and Coreferencefor Scientific Knowledge Graph Construction},
-     booktitle = {Proc.\ Conf. Empirical Methods Natural Language Process. (EMNLP)},
+     booktitle = {Proc.\\ Conf. Empirical Methods Natural Language Process. (EMNLP)},
      year = {2018},
 }"""
 
 # You can copy an official description
 _DESCRIPTION = """\
-SCIERC includes annotations for scientific entities, their relations, and coreference clusters 
-for 500 scientific abstracts. These abstracts are taken from 12 AI conference/workshop proceedings 
-in four AI communities, from the Semantic Scholar Corpus. SCI-ERC extends previous datasets in scientific 
-articles SemEval 2017 Task 10 and SemEval 2018 Task 7 by extending entity types, relation types, relation coverage, 
+SCIERC includes annotations for scientific entities, their relations, and coreference clusters
+for 500 scientific abstracts. These abstracts are taken from 12 AI conference/workshop proceedings
+in four AI communities, from the Semantic Scholar Corpus. SCI-ERC extends previous datasets in scientific
+articles SemEval 2017 Task 10 and SemEval 2018 Task 7 by extending entity types, relation types, relation coverage,
 and adding cross-sentence relations using coreference links.
 """
 
diff --git a/pytorch_ie/data/datasets/hf_datasets/semeval_2010_task_8.py b/pytorch_ie/data/datasets/hf_datasets/semeval_2010_task_8.py
index 5554b181..6edcaba2 100644
--- a/pytorch_ie/data/datasets/hf_datasets/semeval_2010_task_8.py
+++ b/pytorch_ie/data/datasets/hf_datasets/semeval_2010_task_8.py
@@ -1,6 +1,5 @@
 """The SemEval-2010 Task 8 on Multi-way classification of semantic relations between pairs of nominals"""
 
-from __future__ import absolute_import, division, print_function
 
 import os
 import re
@@ -119,7 +118,7 @@ def _split_generators(self, dl_manager):
 
     def _generate_examples(self, filepath):
         """Yields examples."""
-        with open(filepath, "r", encoding="utf-8") as f:
+        with open(filepath, encoding="utf-8") as f:
             raw_lines = []
             for line in f:
                 line = line.strip()
diff --git a/pytorch_ie/data/datasets/hf_datasets/tacred.py b/pytorch_ie/data/datasets/hf_datasets/tacred.py
index aa0c984a..3442a273 100644
--- a/pytorch_ie/data/datasets/hf_datasets/tacred.py
+++ b/pytorch_ie/data/datasets/hf_datasets/tacred.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import json
 import os
diff --git a/pytorch_ie/data/datasets/hf_datasets/webred.py b/pytorch_ie/data/datasets/hf_datasets/webred.py
index 74f8e758..8ae785a3 100644
--- a/pytorch_ie/data/datasets/hf_datasets/webred.py
+++ b/pytorch_ie/data/datasets/hf_datasets/webred.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import os
 import re
@@ -11,7 +10,7 @@
 
 _CITATION_WEBRED = """\
 @misc{ormandi2021webred,
-    title={WebRED: Effective Pretraining And Finetuning For Relation Extraction On The Web}, 
+    title={WebRED: Effective Pretraining And Finetuning For Relation Extraction On The Web},
     author={Robert Ormandi and Mohammad Saleh and Erin Winter and Vinay Rao},
     year={2021},
     eprint={2102.09681},
@@ -23,11 +22,11 @@
 
 # You can copy an official description
 _DESCRIPTION = """\
-A dataset for extracting relationships from a variety of text found on the World Wide Web. Text 
-on the web has diverse surface forms including writing styles, complexity and grammar. This dataset collects 
-sentences from a variety of webpages and documents that represent a variety of those categories. In each sentence, 
-there will be a subject and object entities tagged with subject SUBJ{...} and object OBJ{...}, respectively. The two 
-entities are either related by a relation from a set of pre-defined ones or has no relation. 
+A dataset for extracting relationships from a variety of text found on the World Wide Web. Text
+on the web has diverse surface forms including writing styles, complexity and grammar. This dataset collects
+sentences from a variety of webpages and documents that represent a variety of those categories. In each sentence,
+there will be a subject and object entities tagged with subject SUBJ{...} and object OBJ{...}, respectively. The two
+entities are either related by a relation from a set of pre-defined ones or has no relation.
 
 More information about the dataset can be found in our paper: https://arxiv.org/abs/2102.09681
 """
@@ -36,7 +35,7 @@
 
 _LICENSE = """\
 This data is licensed by Google LLC under a Creative Commons Attribution 4.0 International License (
-http://creativecommons.org/licenses/by/4.0/) Users will be allowed to modify and repost it, and we encourage them to 
+http://creativecommons.org/licenses/by/4.0/) Users will be allowed to modify and repost it, and we encourage them to
 analyze and publish research based on the data.
 """
 
@@ -593,7 +592,7 @@ def __init__(
             `datasets.Value('float32')`.
           **kwargs: keyword arguments forwarded to super.
         """
-        super(WebRedConfig, self).__init__(version=datasets.Version("1.0.0", ""), **kwargs)
+        super().__init__(version=datasets.Version("1.0.0", ""), **kwargs)
         self.class_labels = class_labels
         self.data_url = data_url
         self.citation = citation
diff --git a/pytorch_ie/data/datasets/hf_datasets/wiki80.py b/pytorch_ie/data/datasets/hf_datasets/wiki80.py
index c5b0da1b..adf2ac74 100644
--- a/pytorch_ie/data/datasets/hf_datasets/wiki80.py
+++ b/pytorch_ie/data/datasets/hf_datasets/wiki80.py
@@ -1,6 +1,5 @@
 """TODO: Add a description here."""
 
-from __future__ import absolute_import, division, print_function
 
 import json
 
diff --git a/pytorch_ie/data/datasets/hf_datasets/wikigold.py b/pytorch_ie/data/datasets/hf_datasets/wikigold.py
index 0692e8ed..ffd3a729 100644
--- a/pytorch_ie/data/datasets/hf_datasets/wikigold.py
+++ b/pytorch_ie/data/datasets/hf_datasets/wikigold.py
@@ -49,7 +49,7 @@ def __init__(self, **kwargs):
         Args:
           **kwargs: keyword arguments forwarded to super.
         """
-        super(WikiGoldConfig, self).__init__(**kwargs)
+        super().__init__(**kwargs)
 
 
 class WikiGold(datasets.GeneratorBasedBuilder):
@@ -84,7 +84,7 @@ def _generate_examples(self, filepath=None):
         num_lines = sum(1 for _ in open(filepath))
         id = 0
 
-        with open(filepath, "r") as f:
+        with open(filepath) as f:
             tokens, ner_tags = [], []
             for line in tqdm(f, total=num_lines):
                 line = line.strip().split()
diff --git a/pytorch_ie/data/datasets/json.py b/pytorch_ie/data/datasets/json.py
index 65ccd030..c2556b14 100644
--- a/pytorch_ie/data/datasets/json.py
+++ b/pytorch_ie/data/datasets/json.py
@@ -9,7 +9,7 @@
 
 
 def load_json(path: str, text_field: str = "text") -> List[Document]:
-    with open(path, "r", encoding="utf-8") as data_file:
+    with open(path, encoding="utf-8") as data_file:
         data = json.load(data_file)
 
     annotations = {
diff --git a/pytorch_ie/data/datasets/scierc.py b/pytorch_ie/data/datasets/scierc.py
index 911eaa7a..2fa40703 100644
--- a/pytorch_ie/data/datasets/scierc.py
+++ b/pytorch_ie/data/datasets/scierc.py
@@ -16,7 +16,7 @@ def load_scierc(path: str, split: str) -> List[Document]:
     file_path = os.path.join(path, filename)
 
     documents: List[Document] = []
-    with open(file_path, "r", encoding="utf-8") as data_file:
+    with open(file_path, encoding="utf-8") as data_file:
         for line in data_file:
             data = json.loads(line)
 
diff --git a/pytorch_ie/data/datasets/t_rex.py b/pytorch_ie/data/datasets/t_rex.py
index bc3c1224..fe5810cc 100644
--- a/pytorch_ie/data/datasets/t_rex.py
+++ b/pytorch_ie/data/datasets/t_rex.py
@@ -9,7 +9,7 @@
 
 
 def load_t_rex(path: str, text_field: str = "text") -> List[Document]:
-    with open(path, "r", encoding="utf-8") as data_file:
+    with open(path, encoding="utf-8") as data_file:
         data = json.load(data_file)
 
     documents: List[Document] = []
diff --git a/pytorch_ie/data/datasets/tacred.py b/pytorch_ie/data/datasets/tacred.py
index 1f0377fa..89bcdc4a 100644
--- a/pytorch_ie/data/datasets/tacred.py
+++ b/pytorch_ie/data/datasets/tacred.py
@@ -27,7 +27,7 @@ def load_tacred(path: str, split: str, convert_ptb_tokens: bool = True) -> List[
     file_path = os.path.join(path, filename)
 
     documents: List[Document] = []
-    with open(file_path, "r", encoding="utf-8") as data_file:
+    with open(file_path, encoding="utf-8") as data_file:
         data = json.load(data_file)
 
         for example in data:
diff --git a/pytorch_ie/pipeline.py b/pytorch_ie/pipeline.py
index 71eec594..d18c5206 100644
--- a/pytorch_ie/pipeline.py
+++ b/pytorch_ie/pipeline.py
@@ -148,7 +148,7 @@ def _ensure_tensor_on_device(self, inputs, device):
         elif isinstance(inputs, list):
             return [self._ensure_tensor_on_device(item, device) for item in inputs]
         elif isinstance(inputs, tuple):
-            return tuple([self._ensure_tensor_on_device(item, device) for item in inputs])
+            return tuple(self._ensure_tensor_on_device(item, device) for item in inputs)
         elif isinstance(inputs, torch.Tensor):
             return inputs.to(device)
         else:
diff --git a/pytorch_ie/taskmodules/transformer_re_text_classification.py b/pytorch_ie/taskmodules/transformer_re_text_classification.py
index 180f2503..fcabb959 100644
--- a/pytorch_ie/taskmodules/transformer_re_text_classification.py
+++ b/pytorch_ie/taskmodules/transformer_re_text_classification.py
@@ -43,11 +43,12 @@
 TransformerReTextClassificationTaskEncoding = TaskEncoding[
     TransformerReTextClassificationInputEncoding, TransformerReTextClassificationTargetEncoding
 ]
-TransformerReTextClassificationTaskOutput = TypedDict(
-    "TransformerReTextClassificationTaskOutput",
-    {"labels": List[str], "probabilities": List[float]},
-    total=False,
-)
+
+
+class TransformerReTextClassificationTaskOutput(TypedDict, total=False):
+    labels: List[str]
+    probabilities: List[float]
+
 
 _TransformerReTextClassificationTaskModule = TaskModule[
     # _InputEncoding, _TargetEncoding, _TaskBatchEncoding, _ModelBatchOutput, _TaskOutput
diff --git a/pytorch_ie/taskmodules/transformer_seq2seq.py b/pytorch_ie/taskmodules/transformer_seq2seq.py
index f5d412a1..ab1c9e1c 100644
--- a/pytorch_ie/taskmodules/transformer_seq2seq.py
+++ b/pytorch_ie/taskmodules/transformer_seq2seq.py
@@ -103,7 +103,7 @@ def document_to_target_string(self, document: Document) -> str:
 
             head_to_relation[relation.head].append(relation)
 
-        all_relation_heads = set([relation.head for relation in relations])
+        all_relation_heads = {relation.head for relation in relations}
 
         lin_triplets: List[str] = []
         for head in sorted(all_relation_heads, key=lambda head: head.start):
diff --git a/pytorch_ie/taskmodules/transformer_text_classification.py b/pytorch_ie/taskmodules/transformer_text_classification.py
index a0791581..90e362a1 100644
--- a/pytorch_ie/taskmodules/transformer_text_classification.py
+++ b/pytorch_ie/taskmodules/transformer_text_classification.py
@@ -40,22 +40,16 @@
     TransformerTextClassificationInputEncoding, TransformerTextClassificationTargetEncoding
 ]
 
-TransformerTextClassificationTaskOutputSingle = TypedDict(
-    "TransformerTextClassificationTaskOutputSingle",
-    {
-        "labels": List[str],
-        "probabilities": List[float],
-    },
-    total=False,
-)
-TransformerTextClassificationTaskOutputMulti = TypedDict(
-    "TransformerTextClassificationTaskOutputMulti",
-    {
-        "labels": List[List[str]],
-        "probabilities": List[List[float]],
-    },
-    total=False,
-)
+
+class TransformerTextClassificationTaskOutputSingle(TypedDict, total=False):
+    labels: List[str]
+    probabilities: List[float]
+
+
+class TransformerTextClassificationTaskOutputMulti(TypedDict, total=False):
+    labels: List[List[str]]
+    probabilities: List[List[float]]
+
 
 TransformerTextClassificationTaskOutput = Union[
     TransformerTextClassificationTaskOutputSingle,
diff --git a/pytorch_ie/taskmodules/transformer_token_classification.py b/pytorch_ie/taskmodules/transformer_token_classification.py
index 102b9509..93c8666e 100644
--- a/pytorch_ie/taskmodules/transformer_token_classification.py
+++ b/pytorch_ie/taskmodules/transformer_token_classification.py
@@ -141,7 +141,7 @@ def get_special_token_mask(token_ids_0: List[int], tokenizer: PreTrainedTokenize
     #  (this checks if token_ids_1 is not None and raises an exception)
 
     # exclude unknown token id since this indicate a real input token
-    special_ids = set(tokenizer.all_special_ids) - set([tokenizer.unk_token_id])
+    special_ids = set(tokenizer.all_special_ids) - {tokenizer.unk_token_id}
     return [1 if token_id in special_ids else 0 for token_id in token_ids_0]
 
 


Test patch:
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
deleted file mode 100644
index 5547c612..00000000
--- a/.github/workflows/test.yml
+++ /dev/null
@@ -1,29 +0,0 @@
-name: Test
-
-on:
-  pull_request: {}
-  push:
-    branches: main
-    tags: "*"
-
-jobs:
-  test:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Setup Python
-        uses: actions/setup-python@v1
-        with:
-          python-version: 3.9
-
-      - name: Install dependencies with poetry
-        run: |
-          pip install poetry
-          poetry install
-          poetry run pip install setuptools==59.5.0
-
-      - run: poetry run isort --diff .
-      - run: poetry run black --check .
-      - run: poetry run mypy
-      - run: poetry run pytest -k "not slow" --cov --cov-fail-under=20
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
new file mode 100644
index 00000000..b2ea7a71
--- /dev/null
+++ b/.github/workflows/tests.yml
@@ -0,0 +1,135 @@
+name: Tests
+
+on:
+    - push
+    - pull_request
+
+jobs:
+    tests:
+        name: ${{ matrix.session }} ${{ matrix.python }} / ${{ matrix.os }}
+        runs-on: ${{ matrix.os }}
+        strategy:
+            fail-fast: false
+            matrix:
+                include:
+                    - { python: "3.9", os: "ubuntu-latest", session: "pre-commit" }
+                    - { python: "3.9", os: "ubuntu-latest", session: "mypy" }
+                    - { python: "3.9", os: "ubuntu-latest", session: "tests_not_slow" }
+                    - { python: "3.9", os: "macos-latest", session: "tests_not_slow" }
+                    - { python: "3.9", os: "ubuntu-latest", session: "xdoctest" }
+                    - { python: "3.9", os: "ubuntu-latest", session: "docs-build" }
+                    # - { python: "3.9", os: "windows-latest", session: "tests_not_slow" }
+                    # - { python: "3.9", os: "ubuntu-latest", session: "safety" }
+                    # - { python: "3.9", os: "ubuntu-latest", session: "typeguard" }
+
+        env:
+            NOXSESSION: ${{ matrix.session }}
+            FORCE_COLOR: "1"
+            PRE_COMMIT_COLOR: "always"
+
+        steps:
+            - name: Check out the repository
+              uses: actions/checkout@v2.4.0
+
+            - name: Set up Python ${{ matrix.python }}
+              uses: actions/setup-python@v2.3.2
+              with:
+                  python-version: ${{ matrix.python }}
+                  cache: pip
+                  cache-dependency-path: poetry.lock
+
+            - name: Upgrade pip
+              run: |
+                  pip install --constraint=.github/workflows/constraints.txt pip
+                  pip --version
+            - name: Upgrade pip in virtual environments
+              shell: python
+              run: |
+                  import os
+                  import pip
+                  with open(os.environ["GITHUB_ENV"], mode="a") as io:
+                      print(f"VIRTUALENV_PIP={pip.__version__}", file=io)
+            - name: Install Poetry
+              run: |
+                  pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry
+                  poetry --version
+            - name: Install Nox
+              run: |
+                  pipx install --pip-args=--constraint=.github/workflows/constraints.txt nox
+                  pipx inject --pip-args=--constraint=.github/workflows/constraints.txt nox nox-poetry
+                  nox --version
+            - name: Compute pre-commit cache key
+              if: matrix.session == 'pre-commit'
+              id: pre-commit-cache
+              shell: python
+              run: |
+                  import hashlib
+                  import sys
+                  python = "py{}.{}".format(*sys.version_info[:2])
+                  payload = sys.version.encode() + sys.executable.encode()
+                  digest = hashlib.sha256(payload).hexdigest()
+                  result = "${{ runner.os }}-{}-{}-pre-commit".format(python, digest[:8])
+                  print("::set-output name=result::{}".format(result))
+            - name: Restore pre-commit cache
+              uses: actions/cache@v2.1.7
+              if: matrix.session == 'pre-commit'
+              with:
+                  path: ~/.cache/pre-commit
+                  key: ${{ steps.pre-commit-cache.outputs.result }}-${{ hashFiles('.pre-commit-config.yaml') }}
+                  restore-keys: |
+                      ${{ steps.pre-commit-cache.outputs.result }}-
+            - name: Run Nox
+              run: |
+                  nox --python=${{ matrix.python }}
+            - name: Upload coverage data
+              if: always() && matrix.session == 'tests_not_slow'
+              uses: "actions/upload-artifact@v2.3.1"
+              with:
+                  name: coverage-data
+                  path: ".coverage.*"
+
+            - name: Upload documentation
+              if: matrix.session == 'docs-build'
+              uses: actions/upload-artifact@v2.3.1
+              with:
+                  name: docs
+                  path: docs/_build
+
+    coverage:
+        runs-on: ubuntu-latest
+        needs: tests
+        steps:
+            - name: Check out the repository
+              uses: actions/checkout@v2.4.0
+
+            - name: Set up Python
+              uses: actions/setup-python@v2.3.2
+              with:
+                  python-version: "3.10"
+
+            - name: Upgrade pip
+              run: |
+                  pip install --constraint=.github/workflows/constraints.txt pip
+                  pip --version
+            - name: Install Poetry
+              run: |
+                  pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry
+                  poetry --version
+            - name: Install Nox
+              run: |
+                  pipx install --pip-args=--constraint=.github/workflows/constraints.txt nox
+                  pipx inject --pip-args=--constraint=.github/workflows/constraints.txt nox nox-poetry
+                  nox --version
+            - name: Download coverage data
+              uses: actions/download-artifact@v2.1.0
+              with:
+                  name: coverage-data
+
+            - name: Combine coverage data and display human readable report
+              run: |
+                  nox --session=coverage
+            - name: Create coverage report
+              run: |
+                  nox --session=coverage -- xml
+            - name: Upload coverage report
+              uses: codecov/codecov-action@v2.1.0
diff --git a/tests/fixtures/datasets/json/train.json b/tests/fixtures/datasets/json/train.json
index f277defa..ad011009 100644
--- a/tests/fixtures/datasets/json/train.json
+++ b/tests/fixtures/datasets/json/train.json
@@ -7,36 +7,32 @@
         {
             "text": "Jane lives in Berlin. Berlin is in Germany. This is another sentence.",
             "entities": [
-                {"start": 0, "end": 4, "label": "PER"},
-                {"start": 14, "end": 20, "label": "LOC"},
-                {"start": 22, "end": 28, "label": "LOC"},
-                {"start": 35, "end": 42, "label": "LOC"}
+                { "start": 0, "end": 4, "label": "PER" },
+                { "start": 14, "end": 20, "label": "LOC" },
+                { "start": 22, "end": 28, "label": "LOC" },
+                { "start": 35, "end": 42, "label": "LOC" }
             ],
             "sentences": [
-                {"start": 0, "end": 21, "label": "1"},
-                {"start": 23, "end": 43, "label": "2"},
-                {"start": 44, "end": 69, "label": "3"}
+                { "start": 0, "end": 21, "label": "1" },
+                { "start": 23, "end": 43, "label": "2" },
+                { "start": 44, "end": 69, "label": "3" }
             ]
         },
         {
             "text": "John works at Hamboldt University.",
             "entities": [
-                {"start": 0, "end": 4, "label": "PER"},
-                {"start": 14, "end": 33, "label": "ORG"}
+                { "start": 0, "end": 4, "label": "PER" },
+                { "start": 14, "end": 33, "label": "ORG" }
             ],
-            "sentences": [
-                {"start": 0, "end": 34, "label": "1"}
-            ]
+            "sentences": [{ "start": 0, "end": 34, "label": "1" }]
         },
         {
             "text": "Jim works at Hamburg University.",
             "entities": [
-                {"start": 0, "end": 3, "label": "PER"},
-                {"start": 13, "end": 31, "label": "ORG"}
+                { "start": 0, "end": 3, "label": "PER" },
+                { "start": 13, "end": 31, "label": "ORG" }
             ],
-            "sentences": [
-                {"start": 0, "end": 32, "label": "1"}
-            ]
+            "sentences": [{ "start": 0, "end": 32, "label": "1" }]
         }
     ]
 }
diff --git a/tests/fixtures/datasets/scierc/train.json b/tests/fixtures/datasets/scierc/train.json
deleted file mode 100644
index d4d54f67..00000000
--- a/tests/fixtures/datasets/scierc/train.json
+++ /dev/null
@@ -1,2 +0,0 @@
-{"doc_key": "doc1", "sentences": [["Jane", "lives", "in", "Berlin", "."]], "ner": [[[0, 0, "Person"], [3, 3, "City"]]]}
-{"doc_key": "doc2", "sentences": [["Seattle", "is", "a", "rainy", "city", "."], ["Jenny", "Durkan", "is", "the", "city's", "mayor", "."], ["She", "was", "elected", "in", "2017", "."]], "ner": [[[0, 0, "City"]], [[6, 7, "Person"], [9, 10, "City"]],[[13, 13, "Person"], [17, 17, "Year"]]], "relations": [[], [[6, 7, 9, 10, "Mayor-Of"]], [[13, 13, 17, 17, "Elected-In"]]]}
diff --git a/tests/fixtures/datasets/tacred/train.json b/tests/fixtures/datasets/tacred/train.json
index e9f6e475..bb5e15c8 100644
--- a/tests/fixtures/datasets/tacred/train.json
+++ b/tests/fixtures/datasets/tacred/train.json
@@ -94,32 +94,8 @@
             "O"
         ],
         "stanford_head": [
-            4,
-            4,
-            4,
-            12,
-            12,
-            10,
-            10,
-            10,
-            10,
-            12,
-            12,
-            0,
-            12,
-            12,
-            12,
-            17,
-            15,
-            20,
-            20,
-            17,
-            22,
-            20,
-            25,
-            25,
-            22,
-            12
+            4, 4, 4, 12, 12, 10, 10, 10, 10, 12, 12, 0, 12, 12, 12, 17, 15, 20, 20, 17, 22, 20, 25,
+            25, 22, 12
         ],
         "stanford_deprel": [
             "case",
@@ -269,40 +245,8 @@
             "O"
         ],
         "stanford_head": [
-            6,
-            6,
-            6,
-            6,
-            6,
-            9,
-            8,
-            6,
-            0,
-            11,
-            9,
-            13,
-            11,
-            20,
-            19,
-            19,
-            19,
-            19,
-            20,
-            9,
-            22,
-            20,
-            24,
-            20,
-            27,
-            27,
-            24,
-            27,
-            33,
-            33,
-            33,
-            33,
-            28,
-            9
+            6, 6, 6, 6, 6, 9, 8, 6, 0, 11, 9, 13, 11, 20, 19, 19, 19, 19, 20, 9, 22, 20, 24, 20,
+            27, 27, 24, 27, 33, 33, 33, 33, 28, 9
         ],
         "stanford_deprel": [
             "compound",
@@ -442,34 +386,8 @@
             "O"
         ],
         "stanford_head": [
-            6,
-            6,
-            6,
-            6,
-            6,
-            8,
-            8,
-            0,
-            16,
-            16,
-            10,
-            10,
-            12,
-            10,
-            16,
-            8,
-            16,
-            20,
-            20,
-            17,
-            23,
-            23,
-            16,
-            27,
-            27,
-            27,
-            23,
-            8
+            6, 6, 6, 6, 6, 8, 8, 0, 16, 16, 10, 10, 12, 10, 16, 8, 16, 20, 20, 17, 23, 23, 16, 27,
+            27, 27, 23, 8
         ],
         "stanford_deprel": [
             "compound",
diff --git a/tests/taskmodules/test_transformer_span_classification.py b/tests/taskmodules/test_transformer_span_classification.py
index 908d33cd..56c4a9c8 100644
--- a/tests/taskmodules/test_transformer_span_classification.py
+++ b/tests/taskmodules/test_transformer_span_classification.py
@@ -80,7 +80,7 @@ def test_unbatch_output(prepared_taskmodule, model_output):
     unbatched_output1 = unbatched_outputs[0]
     assert unbatched_output1["tags"] == [(prepared_taskmodule.id_to_label[1], (1, 2))]
     assert len(unbatched_output1["probabilities"]) == 1
-    assert pytest.approx(unbatched_output1["probabilities"][0], 0.5)
+    assert unbatched_output1["probabilities"][0] == pytest.approx(0.5)
 
     unbatched_output2 = unbatched_outputs[1]
     assert len(unbatched_output2["tags"]) == 0