Repository: AllenCellModeling/napari-aicsimageio (language: python)

Issue:
Discussion: license changes
I am opening this issue to have centralized discussion over the two options that are available for this package for handling upstream license changes.

1. `napari-aicsimageio` only supports non-GPL open access licensed readers. I.e. TIFF, PNG, GIF, Zarr, ND2, DV, etc. and `napari-aicsimageio` is able to stay `BSD-3`
2. `napari-aicsimageio` continues to install all formats (including bioformats, lif, etc.) and we change the license to GPL.

I guess there is a third option where we do both and we release `napari-aicsimageio` under BSD and `napari-aicsimageio-gpl` under GPL.

Thoughts? @tlambert03 @psobolewskiPhD 


Discussion / hints:
Woof, I have no idea. 
I will say this: I've learned my way around python and aicsimageio, so napari-aicsimageio is a convenience more then anything. 
But! 
I have coworkers that I'm trying to sell on python and the napari environment. For them, the easy GUI nature of the plugin system is a boon. So the question is which of these options would be least disruptive to someone *not* using the command-line.
Now, if there was a message that would enable the user to open the napari console and paste something to get functionality, that could be a happy medium?
tricky... on the one hand, I'd say "lets just make it GPL and bundle everything".  This package, unlike aicsimageio, is sort of an "end point" (which is how I'm beginning to see GPL :joy:) ... and I don't imagine anyone needing to depend on it.  (napari-bioformats is also GPL)

_however_ ... I would like it if this plugin eventually became the "de-facto" reader plugin for napari... and possibly added to napari's `[all]` extra.  and i imagine that auto-bundling everything here would make that difficult.

so, I guess I'm kinda leaning towards #3, where `napari-aicsimageio-gpl` is a metapackage that just installs `napari-aicsimageio bioformats_jar readlif ...`
>  This package, unlike aicsimageio, is sort of an "end point" (which is how I'm beginning to see GPL :joy: )

This is basically my sentiment too. I somewhat want to say "for now" we move this library over to GPL and then in a couple of months after more readers find their way in, we can figure out how to do CI building of two packages from a single library

Unless you have an example handy somewhere that does this sort of thing already that we can build off of. If it is easy, then we can do it both here and upstream in `aicsimageio` itself.

Fix patch:
diff --git a/.github/workflows/build-main.yml b/.github/workflows/build-main.yml
index 7af7584..39f0f96 100644
--- a/.github/workflows/build-main.yml
+++ b/.github/workflows/build-main.yml
@@ -30,17 +30,26 @@ jobs:
       uses: actions/setup-python@v1
       with:
         python-version: ${{ matrix.python-version }}
+    # Install qt support libs
+    - uses: tlambert03/setup-qt-libs@v1
+
+    # strategy borrowed from vispy for installing opengl libs on windows
+    - name: Install Windows OpenGL
+      if: runner.os == 'Windows'
+      run: |
+        git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git
+        powershell gl-ci-helpers/appveyor/install_opengl.ps1
+        if (Test-Path -Path "C:\Windows\system32\opengl32.dll" -PathType Leaf) {Exit 0} else {Exit 1}
+
     - name: Install Dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install .[test]
-
-    # Install qt support libs
-    - uses: tlambert03/setup-qt-libs@v1     
+        pip install .[test] 
 
     - name: Download Test Resources
       run: |
         python scripts/download_test_resources.py
+
     - name: Test with pytest
       uses: GabrielBB/xvfb-action@v1
       with:
diff --git a/LICENSE b/LICENSE
index 4fe6ea8..f288702 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,11 +1,674 @@
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diff --git a/README.md b/README.md
index f708caf..b619c13 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,8 @@
 # napari-aicsimageio
 
-[![Build Status](https://github.com/AllenCellModeling/napari-aicsimageio/workflows/Build%20Master/badge.svg)](https://github.com/AllenCellModeling/napari-aicsimageio/actions)
-[![Code Coverage](https://codecov.io/gh/AllenCellModeling/napari-aicsimageio/branch/master/graph/badge.svg)](https://codecov.io/gh/AllenCellModeling/napari-aicsimageio)
+[![License](https://img.shields.io/pypi/l/napari-aicsimageio.svg?color=green)](https://github.com/AllenCellModeling/napari-aicsimageio/raw/main/LICENSE)
+[![Build Status](https://github.com/AllenCellModeling/napari-aicsimageio/workflows/Build%20Main/badge.svg)](https://github.com/AllenCellModeling/napari-aicsimageio/actions)
+[![Code Coverage](https://codecov.io/gh/AllenCellModeling/napari-aicsimageio/branch/main/graph/badge.svg)](https://codecov.io/gh/AllenCellModeling/napari-aicsimageio)
 
 AICSImageIO bindings for napari
 
@@ -10,12 +11,18 @@ AICSImageIO bindings for napari
 ## Features
 
 -   Supports reading metadata and imaging data for:
-    -   `CZI`
     -   `OME-TIFF`
     -   `TIFF`
+    -   `CZI`
+    -   `LIF`
+    -   `ND2`
+    -   `DV`
     -   Any formats supported by [aicsimageio](https://github.com/AllenCellModeling/aicsimageio)
+    -   Any formats supported by [bioformats](https://github.com/tlambert03/bioformats_jar)
     -   Any additional format supported by [imageio](https://github.com/imageio/imageio)
 
+_While upstream `aicsimageio` is released under BSD-3 license, this plugin is released under GPLv3 license because it installs all format reader dependencies._
+
 ## Installation
 
 **Stable Release:** `pip install napari-aicsimageio`<br>
@@ -76,4 +83,4 @@ If you find `aicsimageio` _(or `napari-aicsimageio`)_ useful, please cite as:
 
 > AICSImageIO Contributors (2021). AICSImageIO: Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python [Computer software]. GitHub. https://github.com/AllenCellModeling/aicsimageio
 
-_Free software: BSD-3-Clause_
+_Free software: GPLv3_
diff --git a/setup.py b/setup.py
index 80eb36e..07a5294 100644
--- a/setup.py
+++ b/setup.py
@@ -43,10 +43,14 @@
 ]
 
 requirements = [
-    "aicsimageio[all]~=4.1",
+    "aicsimageio[all]>=4.5",
     "fsspec[http]",  # no version pin, we pull from aicsimageio
     "napari>=0.4.11",
     "napari_plugin_engine>=0.1.4",
+    # Formats not included by default with aicsimageio
+    "aicspylibczi>=3.0.5",
+    "bioformats_jar",
+    "readlif>=0.6.4",
 ]
 
 extra_requirements = {


Test patch:
diff --git a/.github/workflows/test-and-lint.yml b/.github/workflows/test-and-lint.yml
index 4d8d608..257f511 100644
--- a/.github/workflows/test-and-lint.yml
+++ b/.github/workflows/test-and-lint.yml
@@ -22,17 +22,27 @@ jobs:
       uses: actions/setup-python@v1
       with:
         python-version: ${{ matrix.python-version }}
+
+    # Install qt support libs
+    - uses: tlambert03/setup-qt-libs@v1
+
+    # strategy borrowed from vispy for installing opengl libs on windows
+    - name: Install Windows OpenGL
+      if: runner.os == 'Windows'
+      run: |
+        git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git
+        powershell gl-ci-helpers/appveyor/install_opengl.ps1
+        if (Test-Path -Path "C:\Windows\system32\opengl32.dll" -PathType Leaf) {Exit 0} else {Exit 1}
+
     - name: Install Dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install .[test]
-    
-    # Install qt support libs
-    - uses: tlambert03/setup-qt-libs@v1     
+        pip install .[test] 
 
     - name: Download Test Resources
       run: |
         python scripts/download_test_resources.py
+
     - name: Test with pytest
       uses: GabrielBB/xvfb-action@v1
       with: