Repository: illinoisdpi/pywbe (language: python)

Issue:
Perc conc change



Discussion / hints:

Fix patch:
diff --git a/.coverage b/.coverage
deleted file mode 100644
index 48ee455..0000000
Binary files a/.coverage and /dev/null differ
diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
index 9e9fcac..eede60a 100644
--- a/.github/workflows/python-publish.yml
+++ b/.github/workflows/python-publish.yml
@@ -1,11 +1,25 @@
 name: Publish Python Package
 
-on:
-  push:
-    branches:
-      - main
-  # - push
-  # - pull_request
+
+#Workflow when something is changed in src or when we push to main
+
+# on:
+#   push:
+#     branches:
+#       - main
+#     paths:
+#       - 'src/**'
+#   pull_request:
+#     branches:
+#       - main
+#     paths:
+#       - 'src/**'
+
+#Workflow to manually publish the package 
+
+on: 
+  workflow_dispatch:
+
 
 jobs:
   test:
@@ -30,8 +44,6 @@ jobs:
       
   deploy:
     needs: test
-    
-
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
@@ -39,6 +51,11 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
+      
+# Clean dist directory
+    - name: Clean dist directory
+      run: rm -rf dist/*
+
     - name: Set up Python
       uses: actions/setup-python@v3
       with:
diff --git a/.github/workflows/sphinx.yml b/.github/workflows/sphinx.yml
index b0bd777..1a04c11 100644
--- a/.github/workflows/sphinx.yml
+++ b/.github/workflows/sphinx.yml
@@ -1,11 +1,24 @@
 name: docs_pages_workflow
  
 # execute this workflow automatically when a we push to master
+# on:
+#   push:
+#     branches: 
+#       - main
+
+#Workflow when something is changed in src or when we push to main 
+
 on:
   push:
-    branches: 
+    branches:
+      - main
+    paths:
+      - 'src/**'
+  pull_request:
+    branches:
       - main
-      - develop2
+    paths:
+      - 'src/**'
  
 jobs:
  
diff --git a/.gitignore b/.gitignore
index 413beb5..8cb99c7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,4 +1,6 @@
 .mypy_cache/
 .nox/
 .pytest_cache/
-__pycache__/
\ No newline at end of file
+__pycache__/
+dist/
+.coverage
\ No newline at end of file
diff --git a/README.md b/README.md
index 7e29730..9961b27 100644
--- a/README.md
+++ b/README.md
@@ -1,10 +1,51 @@
-# pyWBE - An open-source Wastewater-based Epidemiology Library in Python
+<h1 align="center">pyWBE</h1> 
+
+<h3 align="center">An open-source Wastewater-based Epidemiology Library in Python</h3>
+
+<div align="center">
+  <table>
+    <caption><p style="font-weight:bold">Status Badges</p></caption>
+    <tr>
+      <th>Usage</th>
+      <th>Continuous Integration</th>
+      <th>Release</th>
+    </tr>
+    <tr>
+      <td><img alt="PyPI - Python Version" src="https://img.shields.io/badge/python-3.9%20%7C%203.10%20%7C%203.11-blue"></td>
+      <td><img alt="Test Status" src="https://github.com/illinoisdpi/pywbe/actions/workflows/tests.yml/badge.svg"></td>
+      <td><img alt="PyPI - Python Version" src="https://img.shields.io/badge/pypi-v0.0.5-blue"></td>
+    </tr>
+    <tr>
+      <td><img alt="PyPI - License" src="https://img.shields.io/badge/License-MIT-green"></td>
+      <td><img alt="Documentation Status" src="https://img.shields.io/badge/Generate_Docs-passing-Green"></td>
+    </tr>
+    <tr>
+      <td><img alt="GitHub Repo Stars" src="https://img.shields.io/github/stars/illinoisdpi/pywbe?style=social"></td>
+      <td><img alt="Repo Status" src="https://img.shields.io/badge/Repo%20status-Active-Green"></td>
+    </tr>
+  </table>
+</div>
+
+## Online Documentation
+Follow [this link](https://illinoisdpi.github.io/pywbe/) for a nicely-rendered version of this README along with additional tutorials for [using pyWBE](https://illinoisdpi.github.io/pywbe/). Keep reading for a installation guide and links to tutorials!
+
+## Installing `pyWBE`
+
+Installation steps coming up.
+
+### `pip`
+`pyWBE` is available on `PyPI` and can be installed using `pip`:
+
+### Source
+To install `pyWBE` from source for development, see our GitHub.
+
+## Statement of Need
 
 ![Tests](https://github.com/illinoisdpi/pywbe/actions/workflows/tests.yml/badge.svg)
 
 Wastewater-based epidemiology (WBE) is a dynamic tool used historically to monitor various pathogens and contaminants in communities, from viruses such as COVID-19, influenza, and RSV to challenges like opioid detection. With the COVID-19 pandemic, WBE's role as an early detection and monitoring system has grown significantly. However, despite its potential, the WBE field lacks a centralized computational library, leading to redundancies and inefficiencies in data handling and analysis.
 
-Our mission is to address this void by launching "pyWBE", a dedicated Python library catering to a broad range of WBE needs:
+Our mission is to address this void by launching `pyWBE`, a dedicated Python library catering to a broad range of WBE needs:
 
 1. **Data Management**: Efficient tools for efficient data preparation and preprocessing, meta-data integration, eliminating redundancy, and adhering to the CDC's standardized data dictionaries.
 
@@ -18,4 +59,10 @@ Our mission is to address this void by launching "pyWBE", a dedicated Python lib
 
 With the rising reliance on WBE for tracking a spectrum of challenges, from viruses to opioids, a toolkit like "pyWBE" is imperative. It promises to standardize practices, battle misinformation, and serve as an invaluable asset in training and workforce development. "pyWBE" seeks to empower the WBE community, ensuring that accurate, actionable, and standardized insights drive public health decisions.
 
+## Quick Start
+Coming soon
+
+### Example Notebooks
+Coming soon 
+
 ## *We will be uploading the functions soon. Thank you for visiting.
diff --git a/build/lib/pyWBE/first_submodule/__init__.py b/build/lib/pyWBE/first_submodule/__init__.py
deleted file mode 100644
index e69de29..0000000
diff --git a/build/lib/pyWBE/first_submodule/hello_first_sm.py b/build/lib/pyWBE/first_submodule/hello_first_sm.py
deleted file mode 100644
index d586a6f..0000000
--- a/build/lib/pyWBE/first_submodule/hello_first_sm.py
+++ /dev/null
@@ -1,3 +0,0 @@
-def hello_firstsm():
-    print("Hello from first submodule")
-    return None
diff --git a/build/lib/pyWBE/preliminary_functions.py b/build/lib/pyWBE/preliminary_functions.py
index 24d9a68..6c652c5 100644
--- a/build/lib/pyWBE/preliminary_functions.py
+++ b/build/lib/pyWBE/preliminary_functions.py
@@ -11,16 +11,62 @@
 
 
 from pyWBE.exceptions import FunctionNotImplementedError
+import pandas as pd
+import numpy as np
+import matplotlib.pyplot as plt
+
+
+def plot_time_series(series_x: pd.Series, series_y: pd.Series, plot_type: str = "linear") -> None:
+    """
+    This function plots the given time-series data for easy visualization.
+
+    :param series_x: The independent variable, usually indicating time
+    steps in arbitrary or specific units
+    :type series_x: Pandas Series
+    :param series_y: The dependent variable, indicating values of the
+    variable of interest over time
+    :type series_y: Pandas Series (of type float or int)
+    :param plot_type: Determines the type of plot that is plotted.
+    It can be either 'linear' (default) or 'log'. 'linear' plots
+    series_y v/s series_x, 'log' plots the natural log of
+    series_y v/s series_x
+    :type plot_type: str
+    """
+
+    if plot_type == "linear":
+        plt.plot(series_x, series_y)
+        plt.xlabel(series_x.name)
+        plt.ylabel(series_y.name)
+        plt.title("Time Series Visualization")
+        plt.show()
+    elif plot_type == "log":
+        plt.plot(series_x, np.log(series_y))
+        plt.xlabel(series_x.name)
+        plt.ylabel(f"{series_y.name} (log)")
+        plt.title("Time Series Visualization (log scale)")
+        plt.show()
+    else:
+        raise ValueError(f"The 'plot_type' parameter can only be 'linear' or 'log'. {plot_type} is invalid.")
+
+
+def calculate_weekly_concentration_perc_change(conc_data: pd.Series) -> pd.Series:
+    """
+    This function computes the weekly percentage change in concentration levels
+    in the given time-series data.
+    :param conc_data: The concentration data, assumed to have a periodicity of 1 week
+    :type conc_data: Pandas Series (of type float or int)
+    :return: Returns the weekly percentage change in concentration levels
+    :rtype: pd.Series
+    """
+
+    shifted_series = conc_data.copy(deep=True)
+    shifted_series.iloc[:-1] = conc_data.iloc[1:]
+
+    perc_change = (shifted_series - conc_data) / conc_data * 100
+
+    return perc_change.iloc[:-1]
 
 
-def plot_time_series(series_x, series_y, plot_type):
-    raise FunctionNotImplementedError("""The function to plot time series data has not been implemented.""")
-
-
-def calculate_weekly_concentration_perc_change(dates, conc_data):
-    raise FunctionNotImplementedError("""The function to calculate weekly percentage
-                                      changes in concentration has not been implemented.""")
-
 
 def analyze_trends(data, analysis_type):
     raise FunctionNotImplementedError("""The function to analyze trends has not been implemented.""")
diff --git a/dist/pyWBE-0.0.5-py3-none-any.whl b/dist/pyWBE-0.0.5-py3-none-any.whl
deleted file mode 100644
index 60ac619..0000000
Binary files a/dist/pyWBE-0.0.5-py3-none-any.whl and /dev/null differ
diff --git a/dist/pyWBE-0.0.5.tar.gz b/dist/pyWBE-0.0.5.tar.gz
deleted file mode 100644
index d852a68..0000000
Binary files a/dist/pyWBE-0.0.5.tar.gz and /dev/null differ
diff --git a/noxfile.py b/noxfile.py
index c55a914..6285d9f 100644
--- a/noxfile.py
+++ b/noxfile.py
@@ -18,4 +18,4 @@ def test_linting(session):
 @nox.session()
 def run_type_checker(session):
     session.install("mypy")
-    session.run("mypy", "src")
\ No newline at end of file
+    session.run("mypy", "src")
diff --git a/requirements.txt b/requirements.txt
index 7ae5a5e..3f481c3 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,1 +1,3 @@
-numpy==1.26.0
\ No newline at end of file
+numpy==1.26.0
+pandas==2.1.1
+matplotlib==3.7.0
diff --git a/requirements_dev.txt b/requirements_dev.txt
index 47d93e6..5a76871 100644
--- a/requirements_dev.txt
+++ b/requirements_dev.txt
@@ -2,4 +2,7 @@ flake8>=6.0
 tox>=4.10
 pytest>=7.4
 pytest-cov>=4.0
-mypy>=1.7
\ No newline at end of file
+mypy>=1.7
+numpy==1.26.0
+pandas==2.1.1
+matplotlib==3.7.0
diff --git a/setup.cfg b/setup.cfg
index 32a7cc0..cf7fc19 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -36,6 +36,9 @@ testing =
     mypy>=0.910
     flake8>=3.9
     tox>=3.24
+    numpy>=1.26
+    pandas>=2.1
+    matplotlib>=3.7
 
 [options.package_data]
 pyWBE = py.typed
diff --git a/src/pyWBE.egg-info/PKG-INFO b/src/pyWBE.egg-info/PKG-INFO
index b831cda..df4eedf 100644
--- a/src/pyWBE.egg-info/PKG-INFO
+++ b/src/pyWBE.egg-info/PKG-INFO
@@ -14,7 +14,16 @@ Classifier: Development Status :: 5 - Production/Stable
 Classifier: Intended Audience :: Education
 Requires-Python: >=3.9
 Description-Content-Type: text/markdown
+Requires-Dist: numpy>=1.20
 Provides-Extra: testing
+Requires-Dist: pytest>=6.0; extra == "testing"
+Requires-Dist: pytest-cov>=2.0; extra == "testing"
+Requires-Dist: mypy>=0.910; extra == "testing"
+Requires-Dist: flake8>=3.9; extra == "testing"
+Requires-Dist: tox>=3.24; extra == "testing"
+Requires-Dist: numpy>=1.26; extra == "testing"
+Requires-Dist: pandas>=2.1; extra == "testing"
+Requires-Dist: matplotlib>=3.7; extra == "testing"
 
 # pyWBE - An open-source Wastewater-based Epidemiology Library in Python
 
diff --git a/src/pyWBE.egg-info/SOURCES.txt b/src/pyWBE.egg-info/SOURCES.txt
index 1a00b3e..19a8c79 100644
--- a/src/pyWBE.egg-info/SOURCES.txt
+++ b/src/pyWBE.egg-info/SOURCES.txt
@@ -8,6 +8,6115 @@ requirements.txt
 requirements_dev.txt
 setup.cfg
 setup.py
+.nox/run_pytest/Lib/site-packages/_virtualenv.py
+.nox/run_pytest/Lib/site-packages/mccabe.py
+.nox/run_pytest/Lib/site-packages/mypy_extensions.py
+.nox/run_pytest/Lib/site-packages/py.py
+.nox/run_pytest/Lib/site-packages/pycodestyle.py
+.nox/run_pytest/Lib/site-packages/pylab.py
+.nox/run_pytest/Lib/site-packages/six.py
+.nox/run_pytest/Lib/site-packages/typing_extensions.py
+.nox/run_pytest/Lib/site-packages/PIL/BdfFontFile.py
+.nox/run_pytest/Lib/site-packages/PIL/BlpImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/BmpImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/BufrStubImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/ContainerIO.py
+.nox/run_pytest/Lib/site-packages/PIL/CurImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/DcxImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/DdsImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/EpsImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/ExifTags.py
+.nox/run_pytest/Lib/site-packages/PIL/FitsImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/FliImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/FontFile.py
+.nox/run_pytest/Lib/site-packages/PIL/FpxImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/FtexImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/GbrImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/GdImageFile.py
+.nox/run_pytest/Lib/site-packages/PIL/GifImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/GimpGradientFile.py
+.nox/run_pytest/Lib/site-packages/PIL/GimpPaletteFile.py
+.nox/run_pytest/Lib/site-packages/PIL/GribStubImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/Hdf5StubImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/IcnsImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/IcoImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/ImImagePlugin.py
+.nox/run_pytest/Lib/site-packages/PIL/Image.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageChops.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageCms.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageColor.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageDraw.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageDraw2.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageEnhance.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageFile.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageFilter.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageFont.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageGrab.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageMath.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageMode.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageMorph.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageOps.py
+.nox/run_pytest/Lib/site-packages/PIL/ImagePalette.py
+.nox/run_pytest/Lib/site-packages/PIL/ImagePath.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageQt.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageSequence.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageShow.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageStat.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageTk.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageTransform.py
+.nox/run_pytest/Lib/site-packages/PIL/ImageWin.py
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+.nox/test_linting/Lib/site-packages/setuptools/command/_requirestxt.py
+.nox/test_linting/Lib/site-packages/setuptools/command/alias.py
+.nox/test_linting/Lib/site-packages/setuptools/command/bdist_egg.py
+.nox/test_linting/Lib/site-packages/setuptools/command/bdist_rpm.py
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+.nox/test_linting/Lib/site-packages/setuptools/command/develop.py
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+.nox/test_linting/Lib/site-packages/setuptools/command/easy_install.py
+.nox/test_linting/Lib/site-packages/setuptools/command/editable_wheel.py
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+.nox/test_linting/Lib/site-packages/wheel/bdist_wheel.py
+.nox/test_linting/Lib/site-packages/wheel/macosx_libfile.py
+.nox/test_linting/Lib/site-packages/wheel/metadata.py
+.nox/test_linting/Lib/site-packages/wheel/util.py
+.nox/test_linting/Lib/site-packages/wheel/wheelfile.py
+.nox/test_linting/Lib/site-packages/wheel-0.42.0.dist-info/LICENSE.txt
+.nox/test_linting/Lib/site-packages/wheel-0.42.0.dist-info/entry_points.txt
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+.nox/test_linting/Lib/site-packages/wheel/cli/convert.py
+.nox/test_linting/Lib/site-packages/wheel/cli/pack.py
+.nox/test_linting/Lib/site-packages/wheel/cli/tags.py
+.nox/test_linting/Lib/site-packages/wheel/cli/unpack.py
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+.nox/test_linting/Lib/site-packages/wheel/vendored/vendor.txt
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+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/_manylinux.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/_musllinux.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/_parser.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/_structures.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/_tokenizer.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/markers.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/requirements.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/specifiers.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/tags.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/utils.py
+.nox/test_linting/Lib/site-packages/wheel/vendored/packaging/version.py
+.nox/test_linting/Scripts/activate_this.py
+docs/requirements.txt
+docs/source/conf.py
 src/pyWBE/__init__.py
 src/pyWBE/exceptions.py
 src/pyWBE/hello.py
@@ -22,4 +6131,5 @@ src/pyWBE.egg-info/top_level.txt
 src/pyWBE/first_submodule/__init__.py
 src/pyWBE/first_submodule/hello_first_sm.py
 tests/__init__.py
-tests/test_hello.py
\ No newline at end of file
+tests/test_hello.py
+tests/test_preliminary_fns.py
\ No newline at end of file
diff --git a/src/pyWBE.egg-info/requires.txt b/src/pyWBE.egg-info/requires.txt
index f8691d4..5ee7083 100644
--- a/src/pyWBE.egg-info/requires.txt
+++ b/src/pyWBE.egg-info/requires.txt
@@ -6,3 +6,6 @@ pytest-cov>=2.0
 mypy>=0.910
 flake8>=3.9
 tox>=3.24
+numpy>=1.26
+pandas>=2.1
+matplotlib>=3.7
diff --git a/src/pyWBE/preliminary_functions.py b/src/pyWBE/preliminary_functions.py
index 24d9a68..1de79f4 100644
--- a/src/pyWBE/preliminary_functions.py
+++ b/src/pyWBE/preliminary_functions.py
@@ -11,15 +11,60 @@
 
 
 from pyWBE.exceptions import FunctionNotImplementedError
-
-
-def plot_time_series(series_x, series_y, plot_type):
-    raise FunctionNotImplementedError("""The function to plot time series data has not been implemented.""")
-
-
-def calculate_weekly_concentration_perc_change(dates, conc_data):
-    raise FunctionNotImplementedError("""The function to calculate weekly percentage
-                                      changes in concentration has not been implemented.""")
+import pandas as pd
+import numpy as np
+import matplotlib.pyplot as plt
+
+
+def plot_time_series(series_x: pd.Series, series_y: pd.Series, plot_type: str = "linear") -> None:
+    """
+    This function plots the given time-series data for easy visualization.
+
+    :param series_x: The independent variable, usually indicating time
+    steps in arbitrary or specific units
+    :type series_x: Pandas Series
+    :param series_y: The dependent variable, indicating values of the
+    variable of interest over time
+    :type series_y: Pandas Series (of type float or int)
+    :param plot_type: Determines the type of plot that is plotted.
+    It can be either 'linear' (default) or 'log'. 'linear' plots
+    series_y v/s series_x, 'log' plots the natural log of
+    series_y v/s series_x
+    :type plot_type: str
+    """
+
+    if plot_type == "linear":
+        plt.plot(series_x, series_y)
+        plt.xlabel(series_x.name)
+        plt.ylabel(series_y.name)
+        plt.title("Time Series Visualization")
+        plt.show()
+    elif plot_type == "log":
+        plt.plot(series_x, np.log(series_y))
+        plt.xlabel(series_x.name)
+        plt.ylabel(f"{series_y.name} (log)")
+        plt.title("Time Series Visualization (log scale)")
+        plt.show()
+    else:
+        raise ValueError(f"The 'plot_type' parameter can only be 'linear' or 'log'. {plot_type} is invalid.")
+
+
+def calculate_weekly_concentration_perc_change(conc_data: pd.Series) -> pd.Series:
+    """
+    This function computes the weekly percentage change in concentration levels
+    in the given time-series data.
+    :param conc_data: The concentration data, assumed to have a periodicity of 1 week
+    :type conc_data: Pandas Series (of type float or int)
+    :return: Returns the weekly percentage change in concentration levels
+    :rtype: pd.Series
+    """
+
+    shifted_series = conc_data.copy(deep=True)
+    shifted_series.iloc[:-1] = conc_data.iloc[1:]
+
+    perc_change = (shifted_series - conc_data) / conc_data * 100
+
+    return perc_change.iloc[:-1]
 
 
 def analyze_trends(data, analysis_type):


Test patch:
diff --git a/tests/test_preliminary_fns.py b/tests/test_preliminary_fns.py
new file mode 100644
index 0000000..792bcb3
--- /dev/null
+++ b/tests/test_preliminary_fns.py
@@ -0,0 +1,15 @@
+import numpy as np
+import pandas as pd
+import pytest
+from pyWBE import preliminary_functions
+
+
+@pytest.mark.parametrize("test_input, expected", [
+    (pd.Series(np.ones(10)), pd.Series(np.zeros(9))),
+    (pd.Series([1, 2, 4, 8, 16, 32, 64]), pd.Series(np.ones(6)*100)),
+    (pd.Series([2, 4, 7, 10.5, 13.125]), pd.Series([100.0, 75.0, 50.0, 25.0])),
+    (pd.Series(np.arange(4)), pd.Series([np.inf, 100, 50])),
+    (pd.Series(np.zeros(5)), pd.Series(np.ones(4) * np.nan))
+])
+def test_perc_conc_change(test_input, expected):
+    assert preliminary_functions.calculate_weekly_concentration_perc_change(test_input).equals(expected)