Repository: indica-mcf/Indica (language: python)

Issue:
Dependabot alert for lxml
Upgrade this package.


Discussion / hints:

Fix patch:
diff --git a/indica/operators/extrapolate_impurity_density.py b/indica/operators/extrapolate_impurity_density.py
index 513ef841..f80f9bfa 100644
--- a/indica/operators/extrapolate_impurity_density.py
+++ b/indica/operators/extrapolate_impurity_density.py
@@ -69,7 +69,7 @@ def asymmetry_from_R_z(
     else:
         input_check("t_arr", t_arr, DataArray, 1, True)
 
-    theta_arr_ = np.array([0.0, np.pi])
+    theta_arr_ = np.array([0.0, np.pi], dtype=float)
     theta_arr = DataArray(data=theta_arr_, coords={"theta": theta_arr_}, dims=["theta"])
 
     R_deriv, z_deriv = flux_surfaces.convert_to_Rz(rho_arr, theta_arr)
@@ -154,7 +154,7 @@ def asymmetry_from_rho_theta(
         input_check("t_arr", t_arr, DataArray, 1, True)
 
     rho_arr = data_rho_theta.coords["rho_poloidal"]
-    theta_arr_ = np.array([0.0, np.pi])
+    theta_arr_ = np.array([0.0, np.pi], dtype=float)
     theta_arr = DataArray(data=theta_arr_, coords={"theta": theta_arr_}, dims=["theta"])
 
     R_deriv, z_deriv = flux_surfaces.convert_to_Rz(rho_arr, theta_arr)
@@ -376,7 +376,7 @@ def basic_extrapolation(
             Dimensions (rho, theta, t)
         """
 
-        theta_arr = np.array([0.0, np.pi])
+        theta_arr = np.array([0.0, np.pi], dtype=float)
         theta_arr = DataArray(  # type: ignore
             data=theta_arr, coords={"theta": theta_arr}, dims=["theta"]
         )
diff --git a/indica/operators/invert_radiation.py b/indica/operators/invert_radiation.py
index a3c04169..d485add0 100644
--- a/indica/operators/invert_radiation.py
+++ b/indica/operators/invert_radiation.py
@@ -67,7 +67,7 @@ def __init__(
             )
         self.sym_dims = tuple(d for d in symmetric_emissivity.dims if d != self._dim)
         self.sym_coords = {
-            k: np.asarray(v)
+            k: np.asarray(v, dtype=float)
             for k, v in symmetric_emissivity.coords.items()
             if k != self._dim
         }
@@ -84,7 +84,7 @@ def __init__(
         )
         self.asym_dims = tuple(d for d in asymmetry_parameter.dims if d != self._dim)
         self.asym_coords = {
-            k: np.asarray(v)
+            k: np.asarray(v, dtype=float)
             for k, v in asymmetry_parameter.coords.items()
             if k != self._dim
         }
diff --git a/indica/operators/spline_fit.py b/indica/operators/spline_fit.py
index 6239f70d..4f42287d 100644
--- a/indica/operators/spline_fit.py
+++ b/indica/operators/spline_fit.py
@@ -5,6 +5,7 @@
 from itertools import repeat
 from itertools import tee
 from typing import cast
+from typing import Dict
 from typing import Hashable
 from typing import List
 from typing import Tuple
@@ -60,7 +61,7 @@ def __init__(
     ):
         self.dim = dim
         self.spline_dims = tuple(d for d in values.dims if d != dim)
-        self.spline_coords = {
+        self.spline_coords: Dict[Hashable, np.ndarray] = {
             k: np.asarray(v) for k, v in values.coords.items() if k != self.dim
         }
         transpose_order = (self.dim,) + self.spline_dims
@@ -214,7 +215,7 @@ def __call__(  # type: ignore[override]
         droppable_dims = [
             [dim for dim in d.dims if dim != d.attrs["transform"].x1_name] for d in data
         ]
-        good_channels = [
+        good_channels: List[np.ndarray] = [
             np.ravel(
                 cast(
                     DataArray,
diff --git a/indica/readers/surf_los.py b/indica/readers/surf_los.py
index 3f0032d0..8c805254 100644
--- a/indica/readers/surf_los.py
+++ b/indica/readers/surf_los.py
@@ -222,8 +222,8 @@ def _parse_kj34(
     rend = np.concatenate(rend)
     zstart = np.concatenate(zstart)  # type: ignore
     zend = np.concatenate(zend)
-    Tstart = np.zeros_like(rstart)
-    Tend = np.zeros_like(rend)
+    Tstart = np.zeros_like(rstart, dtype=float)
+    Tend = np.zeros_like(rend, dtype=float)
     return rstart, rend, zstart, zend, Tstart, Tend  # type: ignore
 
 
diff --git a/poetry.lock b/poetry.lock
index 0af07dee..0017953c 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -41,22 +41,22 @@ tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>
 
 [[package]]
 name = "babel"
-version = "2.9.1"
+version = "2.10.3"
 description = "Internationalization utilities"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=3.6"
 
 [package.dependencies]
 pytz = ">=2015.7"
 
 [[package]]
 name = "certifi"
-version = "2021.10.8"
+version = "2022.6.15"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "cfgv"
@@ -68,22 +68,22 @@ python-versions = ">=3.6.1"
 
 [[package]]
 name = "cftime"
-version = "1.6.0"
+version = "1.6.1"
 description = "Time-handling functionality from netcdf4-python"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7"
 
 [package.dependencies]
 numpy = ">1.13.3"
 
 [[package]]
 name = "charset-normalizer"
-version = "2.0.12"
+version = "2.1.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "main"
 optional = false
-python-versions = ">=3.5.0"
+python-versions = ">=3.6.0"
 
 [package.extras]
 unicode_backport = ["unicodedata2"]
@@ -98,7 +98,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "colorama"
-version = "0.4.4"
+version = "0.4.5"
 description = "Cross-platform colored terminal text."
 category = "main"
 optional = false
@@ -144,7 +144,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "filelock"
-version = "3.6.0"
+version = "3.7.1"
 description = "A platform independent file lock."
 category = "dev"
 optional = false
@@ -191,19 +191,20 @@ docs = ["sphinx"]
 
 [[package]]
 name = "fonttools"
-version = "4.31.2"
+version = "4.34.2"
 description = "Tools to manipulate font files"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"]
+all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"]
 graphite = ["lz4 (>=1.7.4.2)"]
 interpolatable = ["scipy", "munkres"]
 lxml = ["lxml (>=4.0,<5)"]
 pathops = ["skia-pathops (>=0.5.0)"]
 plot = ["matplotlib"]
+repacker = ["uharfbuzz (>=0.23.0)"]
 symfont = ["sympy"]
 type1 = ["xattr"]
 ufo = ["fs (>=2.2.0,<3)"]
@@ -241,7 +242,7 @@ zoneinfo = ["importlib-resources (>=3.3.0)", "backports.zoneinfo (>=0.2.1)", "tz
 
 [[package]]
 name = "identify"
-version = "2.4.12"
+version = "2.5.1"
 description = "File identification library for Python"
 category = "dev"
 optional = false
@@ -260,7 +261,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "imagesize"
-version = "1.3.0"
+version = "1.4.1"
 description = "Getting image size from png/jpeg/jpeg2000/gif file"
 category = "main"
 optional = false
@@ -268,7 +269,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "importlib-metadata"
-version = "4.11.3"
+version = "4.12.0"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
@@ -280,7 +281,7 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
 perf = ["ipython"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
 
 [[package]]
 name = "iniconfig"
@@ -311,7 +312,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "jinja2"
-version = "3.1.1"
+version = "3.1.2"
 description = "A very fast and expressive template engine."
 category = "main"
 optional = false
@@ -325,7 +326,7 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "kiwisolver"
-version = "1.4.2"
+version = "1.4.3"
 description = "A fast implementation of the Cassowary constraint solver"
 category = "main"
 optional = false
@@ -333,7 +334,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "lxml"
-version = "4.8.0"
+version = "4.9.1"
 description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
 category = "main"
 optional = false
@@ -355,7 +356,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "matplotlib"
-version = "3.5.1"
+version = "3.5.2"
 description = "Python plotting package"
 category = "main"
 optional = false
@@ -398,7 +399,7 @@ python-versions = "*"
 
 [[package]]
 name = "netcdf4"
-version = "1.5.8"
+version = "1.6.0"
 description = "Provides an object-oriented python interface to the netCDF version 4 library."
 category = "main"
 optional = false
@@ -410,7 +411,7 @@ numpy = ">=1.9"
 
 [[package]]
 name = "networkx"
-version = "2.7.1"
+version = "2.8.4"
 description = "Python package for creating and manipulating graphs and networks"
 category = "main"
 optional = false
@@ -418,22 +419,22 @@ python-versions = ">=3.8"
 
 [package.extras]
 default = ["numpy (>=1.19)", "scipy (>=1.8)", "matplotlib (>=3.4)", "pandas (>=1.3)"]
-developer = ["black (==22.1)", "pyupgrade (>=2.31)", "pre-commit (>=2.17)", "mypy (>=0.931)"]
-doc = ["sphinx (>=4.4)", "pydata-sphinx-theme (>=0.8)", "sphinx-gallery (>=0.10)", "numpydoc (>=1.2)", "pillow (>=9.0)", "nb2plots (>=0.6)", "texext (>=0.6.6)"]
-extra = ["lxml (>=4.6)", "pygraphviz (>=1.9)", "pydot (>=1.4.2)"]
-test = ["pytest (>=7.0)", "pytest-cov (>=3.0)", "codecov (>=2.1)"]
+developer = ["pre-commit (>=2.19)", "mypy (>=0.960)"]
+doc = ["sphinx (>=5)", "pydata-sphinx-theme (>=0.9)", "sphinx-gallery (>=0.10)", "numpydoc (>=1.4)", "pillow (>=9.1)", "nb2plots (>=0.6)", "texext (>=0.6.6)"]
+extra = ["lxml (>=4.6)", "pygraphviz (>=1.9)", "pydot (>=1.4.2)", "sympy (>=1.10)"]
+test = ["pytest (>=7.1)", "pytest-cov (>=3.0)", "codecov (>=2.1)"]
 
 [[package]]
 name = "nodeenv"
-version = "1.6.0"
+version = "1.7.0"
 description = "Node.js virtual environment builder"
 category = "dev"
 optional = false
-python-versions = "*"
+python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*"
 
 [[package]]
 name = "numpy"
-version = "1.22.3"
+version = "1.23.0"
 description = "NumPy is the fundamental package for array computing with Python."
 category = "main"
 optional = false
@@ -452,7 +453,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
 [[package]]
 name = "pandas"
-version = "1.4.1"
+version = "1.4.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
@@ -473,23 +474,27 @@ test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"]
 
 [[package]]
 name = "pillow"
-version = "9.0.1"
+version = "9.2.0"
 description = "Python Imaging Library (Fork)"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
+[package.extras]
+docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"]
+tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"]
+
 [[package]]
 name = "platformdirs"
-version = "2.5.1"
+version = "2.5.2"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
-test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"]
+docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"]
+test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"]
 
 [[package]]
 name = "pluggy"
@@ -505,11 +510,11 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "pre-commit"
-version = "2.17.0"
+version = "2.19.0"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 category = "dev"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.7"
 
 [package.dependencies]
 cfgv = ">=2.0.0"
@@ -547,22 +552,22 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "pygments"
-version = "2.11.2"
+version = "2.12.0"
 description = "Pygments is a syntax highlighting package written in Python."
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6"
 
 [[package]]
 name = "pyparsing"
-version = "3.0.7"
-description = "Python parsing module"
+version = "3.0.9"
+description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.6.8"
 
 [package.extras]
-diagrams = ["jinja2", "railroad-diagrams"]
+diagrams = ["railroad-diagrams", "jinja2"]
 
 [[package]]
 name = "pytest"
@@ -647,21 +652,21 @@ tests = ["berkeleydb", "html5lib", "networkx", "pytest", "pytest-cov", "pytest-s
 
 [[package]]
 name = "requests"
-version = "2.27.1"
+version = "2.28.1"
 description = "Python HTTP for Humans."
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.7, <4"
 
 [package.dependencies]
 certifi = ">=2017.4.17"
-charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""}
-idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""}
+charset-normalizer = ">=2,<3"
+idna = ">=2.5,<4"
 urllib3 = ">=1.21.1,<1.27"
 
 [package.extras]
-socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
-use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
+socks = ["PySocks (>=1.5.6,!=1.5.7)"]
+use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
 name = "sal"
@@ -694,15 +699,16 @@ numpy = ">=1.16.5"
 
 [[package]]
 name = "setuptools-scm"
-version = "6.4.2"
+version = "7.0.4"
 description = "the blessed package to manage your versions by scm tags"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 packaging = ">=20.0"
 tomli = ">=1.0.0"
+typing-extensions = "*"
 
 [package.extras]
 test = ["pytest (>=6.2)", "virtualenv (>20)"]
@@ -890,11 +896,11 @@ python-versions = "*"
 
 [[package]]
 name = "typing-extensions"
-version = "4.1.1"
-description = "Backported and Experimental Type Hints for Python 3.6+"
-category = "dev"
+version = "4.3.0"
+description = "Backported and Experimental Type Hints for Python 3.7+"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "urllib3"
@@ -911,7 +917,7 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.14.0"
+version = "20.15.1"
 description = "Virtual Python Environment builder"
 category = "dev"
 optional = false
@@ -929,7 +935,7 @@ testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)",
 
 [[package]]
 name = "werkzeug"
-version = "2.1.0"
+version = "2.1.2"
 description = "The comprehensive WSGI web application library."
 category = "main"
 optional = false
@@ -952,15 +958,15 @@ pandas = ">=0.25"
 
 [[package]]
 name = "zipp"
-version = "3.7.0"
+version = "3.8.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy"]
+docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
 
 [extras]
 docs = ["sphinx", "sphinx-rtd-theme", "sphinxcontrib-plantuml"]
@@ -988,61 +994,57 @@ attrs = [
     {file = "attrs-21.4.0.tar.gz", hash = "sha256:626ba8234211db98e869df76230a137c4c40a12d72445c45d5f5b716f076e2fd"},
 ]
 babel = [
-    {file = "Babel-2.9.1-py2.py3-none-any.whl", hash = "sha256:ab49e12b91d937cd11f0b67cb259a57ab4ad2b59ac7a3b41d6c06c0ac5b0def9"},
-    {file = "Babel-2.9.1.tar.gz", hash = "sha256:bc0c176f9f6a994582230df350aa6e05ba2ebe4b3ac317eab29d9be5d2768da0"},
+    {file = "Babel-2.10.3-py3-none-any.whl", hash = "sha256:ff56f4892c1c4bf0d814575ea23471c230d544203c7748e8c68f0089478d48eb"},
+    {file = "Babel-2.10.3.tar.gz", hash = "sha256:7614553711ee97490f732126dc077f8d0ae084ebc6a96e23db1482afabdb2c51"},
 ]
 certifi = [
-    {file = "certifi-2021.10.8-py2.py3-none-any.whl", hash = "sha256:d62a0163eb4c2344ac042ab2bdf75399a71a2d8c7d47eac2e2ee91b9d6339569"},
-    {file = "certifi-2021.10.8.tar.gz", hash = "sha256:78884e7c1d4b00ce3cea67b44566851c4343c120abd683433ce934a68ea58872"},
+    {file = "certifi-2022.6.15-py3-none-any.whl", hash = "sha256:fe86415d55e84719d75f8b69414f6438ac3547d2078ab91b67e779ef69378412"},
+    {file = "certifi-2022.6.15.tar.gz", hash = "sha256:84c85a9078b11105f04f3036a9482ae10e4621616db313fe045dd24743a0820d"},
 ]
 cfgv = [
     {file = "cfgv-3.3.1-py2.py3-none-any.whl", hash = "sha256:c6a0883f3917a037485059700b9e75da2464e6c27051014ad85ba6aaa5884426"},
     {file = "cfgv-3.3.1.tar.gz", hash = "sha256:f5a830efb9ce7a445376bb66ec94c638a9787422f96264c98edc6bdeed8ab736"},
 ]
 cftime = [
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@@ -1514,12 +1552,12 @@ py = [
     {file = "py-1.11.0.tar.gz", hash = "sha256:51c75c4126074b472f746a24399ad32f6053d1b34b68d2fa41e558e6f4a98719"},
 ]
 pygments = [
-    {file = "Pygments-2.11.2-py3-none-any.whl", hash = "sha256:44238f1b60a76d78fc8ca0528ee429702aae011c265fe6a8dd8b63049ae41c65"},
-    {file = "Pygments-2.11.2.tar.gz", hash = "sha256:4e426f72023d88d03b2fa258de560726ce890ff3b630f88c21cbb8b2503b8c6a"},
+    {file = "Pygments-2.12.0-py3-none-any.whl", hash = "sha256:dc9c10fb40944260f6ed4c688ece0cd2048414940f1cea51b8b226318411c519"},
+    {file = "Pygments-2.12.0.tar.gz", hash = "sha256:5eb116118f9612ff1ee89ac96437bb6b49e8f04d8a13b514ba26f620208e26eb"},
 ]
 pyparsing = [
-    {file = "pyparsing-3.0.7-py3-none-any.whl", hash = "sha256:a6c06a88f252e6c322f65faf8f418b16213b51bdfaece0524c1c1bc30c63c484"},
-    {file = "pyparsing-3.0.7.tar.gz", hash = "sha256:18ee9022775d270c55187733956460083db60b37d0d0fb357445f3094eed3eea"},
+    {file = "pyparsing-3.0.9-py3-none-any.whl", hash = "sha256:5026bae9a10eeaefb61dab2f09052b9f4307d44aee4eda64b309723d8d206bbc"},
+    {file = "pyparsing-3.0.9.tar.gz", hash = "sha256:2b020ecf7d21b687f219b71ecad3631f644a47f01403fa1d1036b0c6416d70fb"},
 ]
 pytest = [
     {file = "pytest-6.2.5-py3-none-any.whl", hash = "sha256:7310f8d27bc79ced999e760ca304d69f6ba6c6649c0b60fb0e04a4a77cacc134"},
@@ -1577,8 +1615,8 @@ rdflib = [
     {file = "rdflib-6.1.1.tar.gz", hash = "sha256:8dbfa0af2990b98471dacbc936d6494c997ede92fd8ed693fb84ee700ef6f754"},
 ]
 requests = [
-    {file = "requests-2.27.1-py2.py3-none-any.whl", hash = "sha256:f22fa1e554c9ddfd16e6e41ac79759e17be9e492b3587efa038054674760e72d"},
-    {file = "requests-2.27.1.tar.gz", hash = "sha256:68d7c56fd5a8999887728ef304a6d12edc7be74f1cfa47714fc8b414525c9a61"},
+    {file = "requests-2.28.1-py3-none-any.whl", hash = "sha256:8fefa2a1a1365bf5520aac41836fbee479da67864514bdb821f31ce07ce65349"},
+    {file = "requests-2.28.1.tar.gz", hash = "sha256:7c5599b102feddaa661c826c56ab4fee28bfd17f5abca1ebbe3e7f19d7c97983"},
 ]
 sal = [
     {file = "sal-1.2.5-py3-none-any.whl", hash = "sha256:f3800f57624f6a34514360405ae154de4541bc166d6259beff39fe6772046b0f"},
@@ -1606,8 +1644,8 @@ scipy = [
     {file = "scipy-1.6.1.tar.gz", hash = "sha256:c4fceb864890b6168e79b0e714c585dbe2fd4222768ee90bc1aa0f8218691b11"},
 ]
 setuptools-scm = [
-    {file = "setuptools_scm-6.4.2-py3-none-any.whl", hash = "sha256:acea13255093849de7ccb11af9e1fb8bde7067783450cee9ef7a93139bddf6d4"},
-    {file = "setuptools_scm-6.4.2.tar.gz", hash = "sha256:6833ac65c6ed9711a4d5d2266f8024cfa07c533a0e55f4c12f6eff280a5a9e30"},
+    {file = "setuptools_scm-7.0.4-py3-none-any.whl", hash = "sha256:53a6f51451a84d891ca485cec700a802413bbc5e76ee65da134e54c733a6e44d"},
+    {file = "setuptools_scm-7.0.4.tar.gz", hash = "sha256:c27bc1f48593cfc9527251f1f0fc41ce282ea57bbc7fd5a1ea3acb99325fab4c"},
 ]
 six = [
     {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
@@ -1697,26 +1735,26 @@ typed-ast = [
     {file = "typed_ast-1.4.3.tar.gz", hash = "sha256:fb1bbeac803adea29cedd70781399c99138358c26d05fcbd23c13016b7f5ec65"},
 ]
 typing-extensions = [
-    {file = "typing_extensions-4.1.1-py3-none-any.whl", hash = "sha256:21c85e0fe4b9a155d0799430b0ad741cdce7e359660ccbd8b530613e8df88ce2"},
-    {file = "typing_extensions-4.1.1.tar.gz", hash = "sha256:1a9462dcc3347a79b1f1c0271fbe79e844580bb598bafa1ed208b94da3cdcd42"},
+    {file = "typing_extensions-4.3.0-py3-none-any.whl", hash = "sha256:25642c956049920a5aa49edcdd6ab1e06d7e5d467fc00e0506c44ac86fbfca02"},
+    {file = "typing_extensions-4.3.0.tar.gz", hash = "sha256:e6d2677a32f47fc7eb2795db1dd15c1f34eff616bcaf2cfb5e997f854fa1c4a6"},
 ]
 urllib3 = [
     {file = "urllib3-1.26.9-py2.py3-none-any.whl", hash = "sha256:44ece4d53fb1706f667c9bd1c648f5469a2ec925fcf3a776667042d645472c14"},
     {file = "urllib3-1.26.9.tar.gz", hash = "sha256:aabaf16477806a5e1dd19aa41f8c2b7950dd3c746362d7e3223dbe6de6ac448e"},
 ]
 virtualenv = [
-    {file = "virtualenv-20.14.0-py2.py3-none-any.whl", hash = "sha256:1e8588f35e8b42c6ec6841a13c5e88239de1e6e4e4cedfd3916b306dc826ec66"},
-    {file = "virtualenv-20.14.0.tar.gz", hash = "sha256:8e5b402037287126e81ccde9432b95a8be5b19d36584f64957060a3488c11ca8"},
+    {file = "virtualenv-20.15.1-py2.py3-none-any.whl", hash = "sha256:b30aefac647e86af6d82bfc944c556f8f1a9c90427b2fb4e3bfbf338cb82becf"},
+    {file = "virtualenv-20.15.1.tar.gz", hash = "sha256:288171134a2ff3bfb1a2f54f119e77cd1b81c29fc1265a2356f3e8d14c7d58c4"},
 ]
 werkzeug = [
-    {file = "Werkzeug-2.1.0-py3-none-any.whl", hash = "sha256:094ecfc981948f228b30ee09dbfe250e474823b69b9b1292658301b5894bbf08"},
-    {file = "Werkzeug-2.1.0.tar.gz", hash = "sha256:9b55466a3e99e13b1f0686a66117d39bda85a992166e0a79aedfcf3586328f7a"},
+    {file = "Werkzeug-2.1.2-py3-none-any.whl", hash = "sha256:72a4b735692dd3135217911cbeaa1be5fa3f62bffb8745c5215420a03dc55255"},
+    {file = "Werkzeug-2.1.2.tar.gz", hash = "sha256:1ce08e8093ed67d638d63879fd1ba3735817f7a80de3674d293f5984f25fb6e6"},
 ]
 xarray = [
     {file = "xarray-0.16.0-py3-none-any.whl", hash = "sha256:e38452dbbb9f7b1938ae23b81ca7d66d1109818040048ec42e59c0c738cbe8f3"},
     {file = "xarray-0.16.0.tar.gz", hash = "sha256:665de4253fcf951e7a6954313b77164d7efca2bd820f0a518b7c25ea46ee43cb"},
 ]
 zipp = [
-    {file = "zipp-3.7.0-py3-none-any.whl", hash = "sha256:b47250dd24f92b7dd6a0a8fc5244da14608f3ca90a5efcd37a3b1642fac9a375"},
-    {file = "zipp-3.7.0.tar.gz", hash = "sha256:9f50f446828eb9d45b267433fd3e9da8d801f614129124863f9c51ebceafb87d"},
+    {file = "zipp-3.8.0-py3-none-any.whl", hash = "sha256:c4f6e5bbf48e74f7a38e7cc5b0480ff42b0ae5178957d564d18932525d5cf099"},
+    {file = "zipp-3.8.0.tar.gz", hash = "sha256:56bf8aadb83c24db6c4b577e13de374ccfb67da2078beba1d037c17980bf43ad"},
 ]


Test patch:
diff --git a/tests/unit/converters/test_time_dt.py b/tests/unit/converters/test_time_dt.py
index e4b7a0a7..3adee9e5 100644
--- a/tests/unit/converters/test_time_dt.py
+++ b/tests/unit/converters/test_time_dt.py
@@ -15,7 +15,7 @@ class Test_time:
     time = np.linspace(0, 0.1, nt)
     values = np.sin(np.linspace(0, np.pi * 3, nt)) + np.random.random(nt) - 0.5
     data = DataArray(values, coords=[("t", time)])
-    channels = np.array([0, 1, 2, 3])
+    channels = np.array([0, 1, 2, 3], dtype=int)
     d = []
     for c in channels:
         d.append(deepcopy(data))
diff --git a/tests/unit/operators/test_centrifugal_asymmetry.py b/tests/unit/operators/test_centrifugal_asymmetry.py
index 7e52e9c9..39f5ebe0 100644
--- a/tests/unit/operators/test_centrifugal_asymmetry.py
+++ b/tests/unit/operators/test_centrifugal_asymmetry.py
@@ -241,7 +241,7 @@ def fractional_abundance_setup(element: str, t: LabeledArray) -> DataArray:
     ACD = ADAS_file.get_adf11("acd", element, "89")
 
     t = np.linspace(75.0, 80.0, 5)
-    rho_profile = np.array([0.0, 0.4, 0.8, 0.95, 1.0])
+    rho_profile = np.array([0.0, 0.4, 0.8, 0.95, 1.0], dtype=float)
 
     input_Te = DataArray(
         data=np.array([3.0e3, 1.5e3, 0.5e3, 0.2e3, 0.1e3]),
diff --git a/tests/unit/operators/test_impurity_concentration.py b/tests/unit/operators/test_impurity_concentration.py
index fca943d4..9af25261 100644
--- a/tests/unit/operators/test_impurity_concentration.py
+++ b/tests/unit/operators/test_impurity_concentration.py
@@ -156,7 +156,7 @@ def fractional_abundance_setup(element: str, t: LabeledArray) -> DataArray:
     SCD = ADAS_file.get_adf11("scd", element, "89")
     ACD = ADAS_file.get_adf11("acd", element, "89")
 
-    rho_profile = np.array([0.0, 0.4, 0.8, 0.95, 1.0])
+    rho_profile = np.array([0.0, 0.4, 0.8, 0.95, 1.0], dtype=float)
 
     input_Ne = DataArray(
         data=np.tile(np.array([5.0e19, 4.0e19, 3.0e19, 2.0e19, 1.0e19]), (len(t), 1)).T,
diff --git a/tests/unit/operators/test_main_ion_density.py b/tests/unit/operators/test_main_ion_density.py
index 4fed6682..4b85ed64 100644
--- a/tests/unit/operators/test_main_ion_density.py
+++ b/tests/unit/operators/test_main_ion_density.py
@@ -67,7 +67,7 @@ def fractional_abundance_setup(element: str, t: LabeledArray) -> DataArray:
     SCD = ADAS_file.get_adf11("scd", element, "89")
     ACD = ADAS_file.get_adf11("acd", element, "89")
 
-    rho_profile = np.array([0.0, 0.4, 0.8, 0.95, 1.0])
+    rho_profile = np.array([0.0, 0.4, 0.8, 0.95, 1.0], dtype=float)
     input_Ne = DataArray(
         data=np.tile(np.array([5.0e19, 4.0e19, 3.0e19, 2.0e19, 1.0e19]), (len(t), 1)).T,
         coords=[("rho_poloidal", rho_profile), ("t", t)],