Repository: AdityaSavara/PEUQSE (language: python)

Issue:
Better none type support



Discussion / hints:

Fix patch:
diff --git a/Examples/ExamplesAndTutorialAndGettingStarted.rtf b/Examples/ExamplesAndTutorialAndGettingStarted.rtf
index 1fff541c..2e3c4b99 100644
--- a/Examples/ExamplesAndTutorialAndGettingStarted.rtf
+++ b/Examples/ExamplesAndTutorialAndGettingStarted.rtf
@@ -1,21 +1,21 @@
 {\rtf1\adeflang1025\ansi\ansicpg1252\uc1\adeff0\deff0\stshfdbch0\stshfloch31506\stshfhich31506\stshfbi31506\deflang1033\deflangfe1033\themelang1033\themelangfe0\themelangcs0{\fonttbl{\f0\fbidi \froman\fcharset0\fprq2{\*\panose 02020603050405020304}Times New Roman;}{\f2\fbidi \fmodern\fcharset0\fprq1{\*\panose 02070309020205020404}Courier New;}
 {\f3\fbidi \froman\fcharset2\fprq2{\*\panose 05050102010706020507}Symbol;}{\f10\fbidi \fnil\fcharset2\fprq2{\*\panose 05000000000000000000}Wingdings;}{\f34\fbidi \froman\fcharset0\fprq2{\*\panose 02040503050406030204}Cambria Math;}
-{\f37\fbidi \fswiss\fcharset0\fprq2{\*\panose 020f0502020204030204}Calibri;}{\f44\fbidi \fswiss\fcharset0\fprq2{\*\panose 00000000000000000000}Segoe UI{\*\falt Sylfaen};}
-{\f45\fbidi \fnil\fcharset128\fprq0{\*\panose 00000000000000000000}HiraginoSans-W3{\*\falt Yu Gothic};}{\f46\fbidi \fnil\fcharset128\fprq0{\*\panose 00000000000000000000}@HiraginoSans-W3;}
+{\f37\fbidi \fswiss\fcharset0\fprq2{\*\panose 020f0502020204030204}Calibri;}{\f43\fbidi \fswiss\fcharset0\fprq2{\*\panose 00000000000000000000}Segoe UI{\*\falt Sylfaen};}
+{\f44\fbidi \fnil\fcharset128\fprq0{\*\panose 00000000000000000000}HiraginoSans-W3{\*\falt Yu Gothic};}{\f45\fbidi \fnil\fcharset128\fprq0{\*\panose 00000000000000000000}@HiraginoSans-W3;}
 {\flomajor\f31500\fbidi \froman\fcharset0\fprq2{\*\panose 02020603050405020304}Times New Roman;}{\fdbmajor\f31501\fbidi \froman\fcharset0\fprq2{\*\panose 02020603050405020304}Times New Roman;}
 {\fhimajor\f31502\fbidi \fswiss\fcharset0\fprq2{\*\panose 020f0302020204030204}Calibri Light;}{\fbimajor\f31503\fbidi \froman\fcharset0\fprq2{\*\panose 02020603050405020304}Times New Roman;}
 {\flominor\f31504\fbidi \froman\fcharset0\fprq2{\*\panose 02020603050405020304}Times New Roman;}{\fdbminor\f31505\fbidi \froman\fcharset0\fprq2{\*\panose 02020603050405020304}Times New Roman;}
-{\fhiminor\f31506\fbidi \fswiss\fcharset0\fprq2{\*\panose 020f0502020204030204}Calibri;}{\fbiminor\f31507\fbidi \froman\fcharset0\fprq2{\*\panose 02020603050405020304}Times New Roman;}{\f48\fbidi \froman\fcharset238\fprq2 Times New Roman CE;}
-{\f49\fbidi \froman\fcharset204\fprq2 Times New Roman Cyr;}{\f51\fbidi \froman\fcharset161\fprq2 Times New Roman Greek;}{\f52\fbidi \froman\fcharset162\fprq2 Times New Roman Tur;}{\f53\fbidi \froman\fcharset177\fprq2 Times New Roman (Hebrew);}
-{\f54\fbidi \froman\fcharset178\fprq2 Times New Roman (Arabic);}{\f55\fbidi \froman\fcharset186\fprq2 Times New Roman Baltic;}{\f56\fbidi \froman\fcharset163\fprq2 Times New Roman (Vietnamese);}{\f68\fbidi \fmodern\fcharset238\fprq1 Courier New CE;}
-{\f69\fbidi \fmodern\fcharset204\fprq1 Courier New Cyr;}{\f71\fbidi \fmodern\fcharset161\fprq1 Courier New Greek;}{\f72\fbidi \fmodern\fcharset162\fprq1 Courier New Tur;}{\f73\fbidi \fmodern\fcharset177\fprq1 Courier New (Hebrew);}
-{\f74\fbidi \fmodern\fcharset178\fprq1 Courier New (Arabic);}{\f75\fbidi \fmodern\fcharset186\fprq1 Courier New Baltic;}{\f76\fbidi \fmodern\fcharset163\fprq1 Courier New (Vietnamese);}{\f388\fbidi \froman\fcharset238\fprq2 Cambria Math CE;}
-{\f389\fbidi \froman\fcharset204\fprq2 Cambria Math Cyr;}{\f391\fbidi \froman\fcharset161\fprq2 Cambria Math Greek;}{\f392\fbidi \froman\fcharset162\fprq2 Cambria Math Tur;}{\f395\fbidi \froman\fcharset186\fprq2 Cambria Math Baltic;}
-{\f396\fbidi \froman\fcharset163\fprq2 Cambria Math (Vietnamese);}{\f418\fbidi \fswiss\fcharset238\fprq2 Calibri CE;}{\f419\fbidi \fswiss\fcharset204\fprq2 Calibri Cyr;}{\f421\fbidi \fswiss\fcharset161\fprq2 Calibri Greek;}
-{\f422\fbidi \fswiss\fcharset162\fprq2 Calibri Tur;}{\f423\fbidi \fswiss\fcharset177\fprq2 Calibri (Hebrew);}{\f424\fbidi \fswiss\fcharset178\fprq2 Calibri (Arabic);}{\f425\fbidi \fswiss\fcharset186\fprq2 Calibri Baltic;}
-{\f426\fbidi \fswiss\fcharset163\fprq2 Calibri (Vietnamese);}{\f488\fbidi \fswiss\fcharset238\fprq2 Segoe UI CE{\*\falt Sylfaen};}{\f489\fbidi \fswiss\fcharset204\fprq2 Segoe UI Cyr{\*\falt Sylfaen};}
-{\f491\fbidi \fswiss\fcharset161\fprq2 Segoe UI Greek{\*\falt Sylfaen};}{\f492\fbidi \fswiss\fcharset162\fprq2 Segoe UI Tur{\*\falt Sylfaen};}{\f493\fbidi \fswiss\fcharset177\fprq2 Segoe UI (Hebrew){\*\falt Sylfaen};}
-{\f494\fbidi \fswiss\fcharset178\fprq2 Segoe UI (Arabic){\*\falt Sylfaen};}{\f495\fbidi \fswiss\fcharset186\fprq2 Segoe UI Baltic{\*\falt Sylfaen};}{\f496\fbidi \fswiss\fcharset163\fprq2 Segoe UI (Vietnamese){\*\falt Sylfaen};}
+{\fhiminor\f31506\fbidi \fswiss\fcharset0\fprq2{\*\panose 020f0502020204030204}Calibri;}{\fbiminor\f31507\fbidi \froman\fcharset0\fprq2{\*\panose 02020603050405020304}Times New Roman;}{\f47\fbidi \froman\fcharset238\fprq2 Times New Roman CE;}
+{\f48\fbidi \froman\fcharset204\fprq2 Times New Roman Cyr;}{\f50\fbidi \froman\fcharset161\fprq2 Times New Roman Greek;}{\f51\fbidi \froman\fcharset162\fprq2 Times New Roman Tur;}{\f52\fbidi \froman\fcharset177\fprq2 Times New Roman (Hebrew);}
+{\f53\fbidi \froman\fcharset178\fprq2 Times New Roman (Arabic);}{\f54\fbidi \froman\fcharset186\fprq2 Times New Roman Baltic;}{\f55\fbidi \froman\fcharset163\fprq2 Times New Roman (Vietnamese);}{\f67\fbidi \fmodern\fcharset238\fprq1 Courier New CE;}
+{\f68\fbidi \fmodern\fcharset204\fprq1 Courier New Cyr;}{\f70\fbidi \fmodern\fcharset161\fprq1 Courier New Greek;}{\f71\fbidi \fmodern\fcharset162\fprq1 Courier New Tur;}{\f72\fbidi \fmodern\fcharset177\fprq1 Courier New (Hebrew);}
+{\f73\fbidi \fmodern\fcharset178\fprq1 Courier New (Arabic);}{\f74\fbidi \fmodern\fcharset186\fprq1 Courier New Baltic;}{\f75\fbidi \fmodern\fcharset163\fprq1 Courier New (Vietnamese);}{\f387\fbidi \froman\fcharset238\fprq2 Cambria Math CE;}
+{\f388\fbidi \froman\fcharset204\fprq2 Cambria Math Cyr;}{\f390\fbidi \froman\fcharset161\fprq2 Cambria Math Greek;}{\f391\fbidi \froman\fcharset162\fprq2 Cambria Math Tur;}{\f394\fbidi \froman\fcharset186\fprq2 Cambria Math Baltic;}
+{\f395\fbidi \froman\fcharset163\fprq2 Cambria Math (Vietnamese);}{\f417\fbidi \fswiss\fcharset238\fprq2 Calibri CE;}{\f418\fbidi \fswiss\fcharset204\fprq2 Calibri Cyr;}{\f420\fbidi \fswiss\fcharset161\fprq2 Calibri Greek;}
+{\f421\fbidi \fswiss\fcharset162\fprq2 Calibri Tur;}{\f422\fbidi \fswiss\fcharset177\fprq2 Calibri (Hebrew);}{\f423\fbidi \fswiss\fcharset178\fprq2 Calibri (Arabic);}{\f424\fbidi \fswiss\fcharset186\fprq2 Calibri Baltic;}
+{\f425\fbidi \fswiss\fcharset163\fprq2 Calibri (Vietnamese);}{\f477\fbidi \fswiss\fcharset238\fprq2 Segoe UI CE{\*\falt Sylfaen};}{\f478\fbidi \fswiss\fcharset204\fprq2 Segoe UI Cyr{\*\falt Sylfaen};}
+{\f480\fbidi \fswiss\fcharset161\fprq2 Segoe UI Greek{\*\falt Sylfaen};}{\f481\fbidi \fswiss\fcharset162\fprq2 Segoe UI Tur{\*\falt Sylfaen};}{\f482\fbidi \fswiss\fcharset177\fprq2 Segoe UI (Hebrew){\*\falt Sylfaen};}
+{\f483\fbidi \fswiss\fcharset178\fprq2 Segoe UI (Arabic){\*\falt Sylfaen};}{\f484\fbidi \fswiss\fcharset186\fprq2 Segoe UI Baltic{\*\falt Sylfaen};}{\f485\fbidi \fswiss\fcharset163\fprq2 Segoe UI (Vietnamese){\*\falt Sylfaen};}
 {\flomajor\f31508\fbidi \froman\fcharset238\fprq2 Times New Roman CE;}{\flomajor\f31509\fbidi \froman\fcharset204\fprq2 Times New Roman Cyr;}{\flomajor\f31511\fbidi \froman\fcharset161\fprq2 Times New Roman Greek;}
 {\flomajor\f31512\fbidi \froman\fcharset162\fprq2 Times New Roman Tur;}{\flomajor\f31513\fbidi \froman\fcharset177\fprq2 Times New Roman (Hebrew);}{\flomajor\f31514\fbidi \froman\fcharset178\fprq2 Times New Roman (Arabic);}
 {\flomajor\f31515\fbidi \froman\fcharset186\fprq2 Times New Roman Baltic;}{\flomajor\f31516\fbidi \froman\fcharset163\fprq2 Times New Roman (Vietnamese);}{\fdbmajor\f31518\fbidi \froman\fcharset238\fprq2 Times New Roman CE;}
@@ -51,8 +51,8 @@
 \sbasedon10 \slink2 \slocked \spriority9 \styrsid1010102 Heading 2 Char;}{\s17\ql \li720\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin720\itap0\contextualspace \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 \sbasedon0 \snext17 \sqformat \spriority34 \styrsid13245668 List Paragraph;}{\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 \rtlch\fcs1 
 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 \snext18 \sqformat \spriority1 \styrsid2162960 No Spacing;}{\s19\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 
-\rtlch\fcs1 \af44\afs18\alang1025 \ltrch\fcs0 \f44\fs18\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 \sbasedon0 \snext19 \slink20 \ssemihidden \sunhideused \styrsid8462065 Balloon Text;}{\*\cs20 \additive \rtlch\fcs1 \af44\afs18 \ltrch\fcs0 
-\f44\fs18 \sbasedon10 \slink19 \slocked \ssemihidden \styrsid8462065 Balloon Text Char;}{\*\cs21 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 \ul\cf19 \sbasedon10 \sunhideused \styrsid539666 Hyperlink;}{\*\cs22 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 \ul\cf20 
+\rtlch\fcs1 \af43\afs18\alang1025 \ltrch\fcs0 \f43\fs18\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 \sbasedon0 \snext19 \slink20 \ssemihidden \sunhideused \styrsid8462065 Balloon Text;}{\*\cs20 \additive \rtlch\fcs1 \af43\afs18 \ltrch\fcs0 
+\f43\fs18 \sbasedon10 \slink19 \slocked \ssemihidden \styrsid8462065 Balloon Text Char;}{\*\cs21 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 \ul\cf19 \sbasedon10 \sunhideused \styrsid539666 Hyperlink;}{\*\cs22 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 \ul\cf20 
 \sbasedon10 \ssemihidden \sunhideused \styrsid1771136 FollowedHyperlink;}{\*\cs23 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 \sbasedon10 \spriority0 \styrsid15683877 pl-v;}{\*\cs24 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 
 \sbasedon10 \spriority0 \styrsid15683877 pl-en;}{\*\cs25 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 \sbasedon10 \spriority0 \styrsid15683877 pl-s1;}{\*\cs26 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 \sbasedon10 \spriority0 \styrsid15683877 pl-c1;}{\*\cs27 
 \additive \rtlch\fcs1 \af0 \ltrch\fcs0 \sbasedon10 \spriority0 \styrsid15683877 pl-s;}{\s28\ql \li0\ri0\sl259\slmult1\keep\keepn\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 \rtlch\fcs1 \af37\afs36\alang1025 \ltrch\fcs0 
@@ -64,7 +64,7 @@ toc 2;}{\*\ts32\tsrowd\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brd
 \trftsWidthB3\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblind0\tblindtype3\tsvertalt\tsbrdrt\tsbrdrl\tsbrdrb\tsbrdrr\tsbrdrdgl\tsbrdrdgr\tsbrdrh\tsbrdrv 
 \ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 \rtlch\fcs1 \af37\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 \sbasedon11 \snext32 \spriority39 \styrsid4808518 
 Table Grid;}{\s33\ql \li0\ri0\sb100\sa100\sbauto1\saauto1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 \rtlch\fcs1 \af0\afs24\alang1025 \ltrch\fcs0 \fs24\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 
-\sbasedon0 \snext33 \ssemihidden \sunhideused \styrsid1391864 Normal (Web);}}{\*\listtable{\list\listtemplateid512510946\listhybrid{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext
+\sbasedon0 \snext33 \ssemihidden \sunhideused \styrsid1391864 Normal (Web);}}{\*\listtable{\list\listtemplateid-1\listhybrid{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext
 \leveltemplateid67698705\'02\'00);}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 \fbias0 \fi-360\li720\lin720 }{\listlevel\levelnfc4\levelnfcn4\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698713
 \'02\'01.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 \fi-360\li1440\lin1440 }{\listlevel\levelnfc2\levelnfcn2\leveljc2\leveljcn2\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698715\'02\'02.;}{\levelnumbers\'01;}
 \rtlch\fcs1 \af0 \ltrch\fcs0 \fi-180\li2160\lin2160 }{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698703\'02\'03.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
@@ -73,84 +73,83 @@ Table Grid;}{\s33\ql \li0\ri0\sb100\sa100\sbauto1\saauto1\widctlpar\wrapdefault\
 \fi-180\li4320\lin4320 }{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698703\'02\'06.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
 \fi-360\li5040\lin5040 }{\listlevel\levelnfc4\levelnfcn4\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698713\'02\'07.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
 \fi-360\li5760\lin5760 }{\listlevel\levelnfc2\levelnfcn2\leveljc2\leveljcn2\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698715\'02\'08.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-180\li6480\lin6480 }{\listname ;}\listid51655930}{\list\listtemplateid-1467423164\listhybrid{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698705
-\'02\'00);}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 \fbias0 \fi-360\li720\lin720 }{\listlevel\levelnfc4\levelnfcn4\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698713\'02\'01.;}{\levelnumbers
-\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 \fi-360\li1440\lin1440 }{\listlevel\levelnfc2\levelnfcn2\leveljc2\leveljcn2\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698715\'02\'02.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 
-\ltrch\fcs0 \fi-180\li2160\lin2160 }{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698703\'02\'03.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-360\li2880\lin2880 }{\listlevel\levelnfc4\levelnfcn4\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698713\'02\'04.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-360\li3600\lin3600 }{\listlevel\levelnfc2\levelnfcn2\leveljc2\leveljcn2\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698715\'02\'05.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-180\li4320\lin4320 }{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698703\'02\'06.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-360\li5040\lin5040 }{\listlevel\levelnfc4\levelnfcn4\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698713\'02\'07.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-360\li5760\lin5760 }{\listlevel\levelnfc2\levelnfcn2\leveljc2\leveljcn2\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698715\'02\'08.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-180\li6480\lin6480 }{\listname ;}\listid88814709}{\list\listtemplateid790796612\listhybrid{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698705
-\'02\'00);}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 \fbias0 \fi-360\li720\lin720 }{\listlevel\levelnfc4\levelnfcn4\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698713\'02\'01.;}{\levelnumbers
-\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 \fi-360\li1440\lin1440 }{\listlevel\levelnfc2\levelnfcn2\leveljc2\leveljcn2\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698715\'02\'02.;}{\levelnumbers\'01;}\rtlch\fcs1 
-\af0 \ltrch\fcs0 \fi-180\li2160\lin2160 }{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698703\'02\'03.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-360\li2880\lin2880 }{\listlevel\levelnfc4\levelnfcn4\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698713\'02\'04.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-360\li3600\lin3600 }{\listlevel\levelnfc2\levelnfcn2\leveljc2\leveljcn2\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698715\'02\'05.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-180\li4320\lin4320 }{\listlevel\levelnfc0\levelnfcn0\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698703\'02\'06.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-360\li5040\lin5040 }{\listlevel\levelnfc4\levelnfcn4\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698713\'02\'07.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-360\li5760\lin5760 }{\listlevel\levelnfc2\levelnfcn2\leveljc2\leveljcn2\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698715\'02\'08.;}{\levelnumbers\'01;}\rtlch\fcs1 \af0 \ltrch\fcs0 
-\fi-180\li6480\lin6480 }{\listname ;}\listid329992955}{\list\listtemplateid429398660\listhybrid{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat61\levelspace0\levelindent0{\leveltext\leveltemplateid982047148
-\'01\u-3864 ?;}{\levelnumbers;}\loch\af10\hich\af10\dbch\af0\fbias0 \fi-360\li1080\lin1080 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691
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 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 1}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 
 \ltrch\fcs0 \lang1024\langfe1024\dbch\af31505\noproof\insrsid4545857 
 \par }{\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\insrsid4545857 HYPERLINK \\l "_Toc56022175"}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700350000000000005c0000000079010900200c00061500900000002500004c0079007f0100005100a8}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700350000000000005c0000000079010900200c00061500900000002500004c0079007f0100005100a8006f}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 Importance of the MCMC and non-MCMC samplers in }{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 \tab }{\field{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857  PAGEREF _Toc56022175 \\h }{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\lang1024\langfe1024\noproof\webhidden\insrsid4545857 {\*\datafield 08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f00630035003600300032003200310037003500000000000000000000004f000000009800000f4f900000007200003c00000000000000a0008f}}
-}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 1}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect
+\lang1024\langfe1024\noproof\webhidden\insrsid4545857 {\*\datafield 08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f00630035003600300032003200310037003500000000000000000000004f000000009800000f4f900000007200003c00000000000000a0008f0079}
+}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 1}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect
 \linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\dbch\af31505\noproof\insrsid4545857 
 \par }{\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\insrsid4545857 HYPERLINK \\l "_Toc56022176"}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700360000000000f72d0000000000000000002d00a500009000000049000000002e0057000000140098}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700360000000000f72d0000000000000000002d00a500009000000049000000002e0057000000140098002c}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 Normal process for a Bayesian Parameter Estimation with }{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 \tab }{\field{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857  PAGEREF _Toc56022176 \\h }{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\lang1024\langfe1024\noproof\webhidden\insrsid4545857 {\*\datafield 08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700360000000000982e0000ff004f0000861c6b003aef00660000000000000000350069000000040040}}
-}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 2}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect
+\lang1024\langfe1024\noproof\webhidden\insrsid4545857 {\*\datafield 08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700360000000000982e0000ff004f0000861c6b003aef0066000000000000000035006900000004004000d1}
+}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 2}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect
 \linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\dbch\af31505\noproof\insrsid4545857 
 \par }{\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\insrsid4545857 HYPERLINK \\l "_Toc56022177"}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700370000000045ec86000000000000000000800000000000000000000000000073007700fb00930054}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700370000000045ec86000000000000000000800000000000000000000000000073007700fb00930054006f}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 Examples}{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 \tab }{\field{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857  PAGEREF _Toc56022177 \\h }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f006300350036003000320032003100370037000000000f0261000000004f00006f000000009e001c000000000000000000000000c0004600a8}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f006300350036003000320032003100370037000000000f0261000000004f00006f000000009e001c000000000000000000000000c0004600a80038}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 2}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 
 \ltrch\fcs0 \lang1024\langfe1024\dbch\af31505\noproof\insrsid4545857 
 \par }\pard\plain \ltrpar\s31\ql \li220\ri0\sa100\sl259\slmult1\widctlpar\tqr\tldot\tx9350\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin220\itap0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\insrsid4545857 HYPERLINK \\l "_Toc56022178"}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f00630035003600300032003200310037003800000000d422860d00550000ff000000094a8c000000630000000000000065000055650031ff8f}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f00630035003600300032003200310037003800000000d422860d00550000ff000000094a8c000000630000000000000065000055650031ff8f0069}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 Key for Which Features are In Which Examples:}{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 \tab }{\field{\*\fldinst {\rtlch\fcs1 \af0 
 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857  PAGEREF _Toc56022178 \\h }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f006300350036003000320032003100370038000000007ff761006c002d4f000074000fd63a0800003d0000000000000000bd00b37100000098}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f006300350036003000320032003100370038000000007ff761006c002d4f000074000fd63a0800003d0000000000000000bd00b371000000980000}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 3}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 
 \ltrch\fcs0 \lang1024\langfe1024\dbch\af31505\noproof\insrsid4545857 
 \par }{\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\insrsid4545857 HYPERLINK \\l "_Toc56022179"}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f00630035003600300032003200310037003900000000029865002055280000003800ef25000000006900000f0000000000170072fb00000040}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f00630035003600300032003200310037003900000000029865002055280000003800ef25000000006900000f0000000000170072fb000000400030}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 Using Parallel Processing (including MPI)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 \tab }{\field{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857  PAGEREF _Toc56022179 \\h }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700390000000090ec0000690c164f000091002e62002e0008630000000000000065000091c000000054}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f0063003500360030003200320031003700390000000090ec0000690c164f000091002e62002e0008630000000000000065000091c0000000540014}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 11}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 
 \ltrch\fcs0 \lang1024\langfe1024\dbch\af31505\noproof\insrsid4545857 
 \par }\pard\plain \ltrpar\s29\ql \li0\ri0\sa100\sl259\slmult1\widctlpar\tqr\tldot\tx9350\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 
 {\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\insrsid4545857 HYPERLINK \\l "_Toc56022180"}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f00630035003600300032003200310038003000000000000200003655030000008600ff00cc0057c03d000000000000000000000665000000a8}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f00630035003600300032003200310038003000000000000200003655030000008600ff00cc0057c03d000000000000000000000665000000a80074}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \cs21\ul\cf19\lang1024\langfe1024\noproof\insrsid4545857\charrsid6044232 Tips and Tricks (and FAQ):}{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 \tab }{\field{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857  PAGEREF _Toc56022180 \\h }{\rtlch\fcs1 \af0 \ltrch\fcs0 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 {\*\datafield 
-08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f006300350036003000320032003100380030000000000022410d5503004f000000000000000000006900000000000000006300747100ff008f}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
+08d0c9ea79f9bace118c8200aa004ba90b02000000080000000d0000005f0054006f006300350036003000320032003100380030000000000022410d5503004f000000000000000000006900000000000000006300747100ff008f0065}}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \lang1024\langfe1024\noproof\webhidden\insrsid4545857 12}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj }}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 
 \ltrch\fcs0 \lang1024\langfe1024\dbch\af31505\noproof\insrsid4545857 
 \par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid6114055 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 }}
@@ -320,21 +319,21 @@ To see the full set of options that exists in the UserInput module, open the fil
 \b\insrsid7410249  the Workshop materials}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7031939  at }{\field{\*\fldinst {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7031939  HYPERLINK "}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7031939\charrsid7031939 
 https://github.com/AdityaSavara/PEUQSE}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7031939 _Workshop" }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid3236923 {\*\datafield 
 00d0c9ea79f9bace118c8200aa004ba90b0200000003000000e0c9ea79f9bace118c8200aa004ba90b78000000680074007400700073003a002f002f006700690074006800750062002e0063006f006d002f004100640069007400790061005300610076006100720061002f005000450055005100530045005f0057006f00
-72006b00730068006f0070000000795881f43b1d7f48af2c825dc485276300000000a5ab000300502e6196}}}{\fldrslt {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \cs21\b\ul\cf19\insrsid7031939\charrsid7301657 https://github.com/AdityaSavara/PEUQSE_Workshop}}}\sectd \ltrsect
+72006b00730068006f0070000000795881f43b1d7f48af2c825dc485276300000000a5ab000300502e61960000}}}{\fldrslt {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \cs21\b\ul\cf19\insrsid7031939\charrsid7301657 https://github.com/AdityaSavara/PEUQSE_Workshop}}}\sectd \ltrsect
 \linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7031939 .  T}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7410249 hen read the tips and tricks at the end of this document.}{\rtlch\fcs1 
 \ab\af0 \ltrch\fcs0 \b\insrsid7031939  Then look at the examples here as needed.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7410249  T}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12400\charrsid12400 hen Join the Google Group to ask for further help: }
 {\field\fldedit{\*\fldinst {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308  HYPERLINK "}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308\charrsid12400 https://groups.google.com/g/}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308 Ch}{\rtlch\fcs1 
 \ab\af0 \ltrch\fcs0 \b\insrsid9129308\charrsid12400 e}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308 K}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308\charrsid12400 i}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308 PEUQ-users" }{\rtlch\fcs1 
 \ab\af0 \ltrch\fcs0 \b\insrsid8000180 {\*\datafield 
 00d0c9ea79f9bace118c8200aa004ba90b0200000003000000e0c9ea79f9bace118c8200aa004ba90b70000000680074007400700073003a002f002f00670072006f007500700073002e0067006f006f0067006c0065002e0063006f006d002f0067002f004300680065004b00690050004500550051002d00750073006500
-720073000000795881f43b1d7f48af2c825dc485276300000000a5ab00030000000300000000b8ab00470700eb005700006f0000000030000000e3c900000000007200000010000000060039000007000072000000b800d20000632044}}}{\fldrslt {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
+720073000000795881f43b1d7f48af2c825dc485276300000000a5ab00030000000300000000b8ab00470700eb005700006f0000000030000000e3c900000000007200000010000000060039000007000072000000b800d20000632044002c}}}{\fldrslt {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
 \cs21\b\ul\cf19\insrsid9129308\charrsid8329325 https://groups.google.com/g/}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \cs21\b\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \cs21\b\ul\cf19\insrsid9129308\charrsid8329325 -users}}}\sectd \ltrsect
 \linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12400\charrsid12400  . You can also add to existing issues discussions github }
 {\field\fldedit{\*\fldinst {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308  HYPERLINK "}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308\charrsid12400 https://github.com/AdityaSavara/PEUQSE/issues}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308 " 
 }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid8000180 {\*\datafield 
 00d0c9ea79f9bace118c8200aa004ba90b0200000003000000e0c9ea79f9bace118c8200aa004ba90b7a000000680074007400700073003a002f002f006700690074006800750062002e0063006f006d002f004100640069007400790061005300610076006100720061002f004300680065004b0069005000450055005100
-2f006900730073007500650073000000795881f43b1d7f48af2c825dc485276300000000a5ab0003003d00cc000000000000000000320000633400500000000000000000169a00b968005f0000ba170000200000000000000a0000000080a2000000000046002e}}}{\fldrslt {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
-\cs21\b\ul\cf19\insrsid9129308\charrsid8329325 https://github.com/AdityaSavara/}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \cs21\b\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \cs21\b\ul\cf19\insrsid9129308\charrsid8329325 /issues}}}
+2f006900730073007500650073000000795881f43b1d7f48af2c825dc485276300000000a5ab0003003d00cc000000000000000000320000633400500000000000000000169a00b968005f0000ba170000200000000000000a0000000080a2000000000046002e0069}}}{\fldrslt {\rtlch\fcs1 \ab\af0 
+\ltrch\fcs0 \cs21\b\ul\cf19\insrsid9129308\charrsid8329325 https://github.com/AdityaSavara/}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \cs21\b\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \cs21\b\ul\cf19\insrsid9129308\charrsid8329325 /issues}}}
 \sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9129308  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12400\charrsid12400 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid1788208 Users should be aware that the MCMC sampling is set to a low number for many of these examples so that a user can just test if they run.  If the user thinks an example\rquote s output looks \lquote bad
 \rquote , they may need to increase the MCMC sampling.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid393687 
@@ -404,15 +403,14 @@ reload.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14905792 \cell }\pard\plain \ltr
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid663104 BPE by Ensemble Jump Sampling}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 00a1}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell }\pard\plain \ltrpar
-\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
-\b\insrsid663104 \trowd \irow7\irowband7\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
-\trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
-\clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
-}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid663104 BPE by Ensemble Slice Sampling Global}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 00a3}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell }\pard\plain \ltrpar
-\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
-\b\insrsid663104 \trowd \irow8\irowband8\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\af0 \ltrch\fcs0 \insrsid663104 BPE by Ensemble Jump Sampling\cell 00a1\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow7\irowband7\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
+\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
+\cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 BPE by Ensemble Slice Sampling Global\cell 00a3\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
+\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
+\trowd \irow8\irowband8\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
@@ -433,176 +431,183 @@ reload.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14905792 \cell }\pard\plain \ltr
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid663104 GridSearch to Distribution\cell 00f2 and 00f3\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow12\irowband12\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
-\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
-\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
-\cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 (Uniform) Random Sampling to Distribution \cell 00f4\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
+\af0 \ltrch\fcs0 \insrsid663104 GridSearch }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4202459 to get BPE Posterior}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell 00f2 and 00f3\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
 \widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow13\irowband13\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\trowd \irow12\irowband12\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid663104 Gridsearch : BPE by Single Point Gridsearch\cell 3d}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
-\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow14\irowband14\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\af0 \ltrch\fcs0 \insrsid663104 (Uniform) Random Sampling }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4202459 to get BPE Posterior}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4202459 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 00f4}{\rtlch\fcs1 \af0 
+\ltrch\fcs0 \insrsid4202459 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow13\irowband13\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
+\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
+\cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4202459 Astroidal Sampling }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4202459 to get BPE Posterior\cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4202459 00f9}{
+\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4202459 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid4202459 \trowd \irow14\irowband14\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
+\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
+\cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 Gridsearch : BPE by Single Point Gridsearch\cell 3d}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \cell }\pard\plain \ltrpar
+\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
+\b\insrsid663104 \trowd \irow15\irowband15\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Gridsearch : BPE by MH MCMC Gridsearch}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104\charrsid4808518 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 3d2 (uniform is 3d5 and runs in < 1 min)}{\rtlch\fcs1 \ab\af0 
 \ltrch\fcs0 \b\insrsid663104 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow15\irowband15\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow16\irowband16\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
 \brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
 \brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 Gridsearch : BPE by ESS MCMC Gridsearch\cell 3d3}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \cell }\pard\plain \ltrpar
 \ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
-\b\insrsid663104 \trowd \irow16\irowband16\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
-\trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
-\clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
-}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid663104 GridSearch: Custom Grid Definitions\line (including less exploration of certain parameters without setting them as constant)\cell 3e (UserInput argument syntax), 3e5 (direct argument syntax),   07g  (deprecated syntax in 
-16b etc.)\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
-\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow17\irowband17\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\b\insrsid663104 \trowd \irow17\irowband17\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid663104\charrsid4808518 CPE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104  (true CPE)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4808518 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid6313672 00b }{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 , }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid264609 Example 3c_SSR}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid6313672 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
-\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow18\irowband18\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\af0 \ltrch\fcs0 \insrsid663104 GridSearch: Custom Grid Definitions\line (including less exploration of certain parameters without setting them as constant)\cell 3e (UserIn
+put argument syntax), 3e5 (direct argument syntax),   07g  (deprecated syntax in 16b etc.)\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 
+\ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow18\irowband18\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 
+\trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt
+\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
+\cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4808518 CPE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104  (true CPE)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4808518 \cell }{
+\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid6313672 00b }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 , }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid264609 Example 3c_SSR}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid6313672 \cell 
+}\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 
+\ltrch\fcs0 \b\insrsid663104 \trowd \irow19\irowband19\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Uninformed Prior / Uniform Prior/ pseudo-CPE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4808518 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid1246133 00c}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 
 , Example 25}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid1246133 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow19\irowband19\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow20\irowband20\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
 \brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
 \brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 Plotting}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4808518 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid2457541 \\}{
 \rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 PEUQSE\\}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid2457541 mumpce_custom_plotting_example.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 
 \par (Eventually will make a page of plotting examples)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid2457541 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 
-\rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow20\irowband20\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl
+\rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow21\irowband21\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl
 \brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104\charrsid12811867 De}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 sign of Experiments}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid12811867 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid7479958 
 Example13doeFunctionExample\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow21\irowband21\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow22\irowband22\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
 \brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
 \brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid5182750 Mod}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 el Simulation Uncertainty (different from observed point uncertainty)}{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid5182750 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 7f (two responses), }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid3560770 Examp}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 le 24
- (one response)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid3560770 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow22\irowband22\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
-\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
-\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
+\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid5182750 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 7f (two responses), }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid3560770 Examp}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 
+le 24 (one response)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid3560770 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 
+\ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow23\irowband23\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 
+\trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt
+\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid527327 Mul}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 tiple Responses }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid527327 \cell 
 7a\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
-\ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow23\irowband23\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow24\irowband24\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Parallel Processing of individual mcmc with MPI }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid527327 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 26a and 26b.  26b3 has continued sampling.}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid663104\charrsid527327 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow24\irowband24\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow25\irowband25\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
 \brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
 \brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 Parallel Processing of mcmc gridsearch with MPI\cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid7109676 26c}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid663104 2 (MH gridsearch) 26g2 (ESS gridsearch). 26c3 and 26c3 and 26g3 show continued sampling.\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 
-\rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow25\irowband25\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl
+\rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow26\irowband26\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl
 \brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Parallel Processing of mcmc multistart with MPI\cell 26d (mcmc multistart with non-grid)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid7109676 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
 \widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow26\irowband26\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\trowd \irow27\irowband27\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Parallel Processing of other multistart with MPI\cell 26f (non-mcmc multistart, can be grid or non-grid)\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
 \widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow27\irowband27\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\trowd \irow28\irowband28\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Parallel Processing with multiprocessing pool\cell Example 27\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 
-\af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow28\irowband28\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 
+\af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow29\irowband29\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 
 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 DOE }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4263079 parallel_parameter_modulation}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4263079 
 Example13doeFunctionExample}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow29\irowband29\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow30\irowband30\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
 \brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
 \brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 DOE }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4263079 parallel_conditions_exploration}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 
 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4263079 Example13doeFunctionExample}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
 \widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow30\irowband30\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\trowd \irow31\irowband31\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Inputting full covariance for parameter initial uncertainty\cell 7b, 7c\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 
-\af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow31\irowband31\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 
+\af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow32\irowband32\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 
 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Inputting full covariance for response uncertainties\cell 7j (observed), 7k (simulation uncertainty)\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
 \widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow32\irowband32\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\trowd \irow33\irowband33\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Custom log likelihood}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid527327 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 7d, 7e}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid527327 \cell 
 }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 
-\ltrch\fcs0 \b\insrsid663104 \trowd \irow33\irowband33\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\ltrch\fcs0 \b\insrsid663104 \trowd \irow34\irowband34\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Reduced parameter space\line (Hold some parameters as constant during sampling. This is taking a slice of the posterior)\cell 3c\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
 \widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow34\irowband34\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\trowd \irow35\irowband35\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Reduced response space\line (Ignore some responses)\cell 10\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 
-\af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow35\irowband35\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 
+\af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow36\irowband36\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 
 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Mcmc_threshold_filter\cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid4287381 Example 00c}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 7\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
 \widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow36\irowband36\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\trowd \irow37\irowband37\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104\charrsid2631244 responses_observed_weight}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 ing\cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid2631244 7a_weighted}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid663104\charrsid4287381 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
-\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow37\irowband37\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
+\f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow38\irowband38\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr
 \brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt
 \brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 
 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow}\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 
 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 Fix stuck walkers with reinitializing initial walker positions near previous MAP}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid2631244 
 \cell }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 Example28/runfile_316_EJS and runfile_316_EJSresampled}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104\charrsid2631244 \cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1
 \widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 
-\trowd \irow38\irowband38\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
+\trowd \irow39\irowband39\ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl\brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row \ltrrow
 }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\pararsid663104\yts32 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid663104 Reload the output to change the filitering coefficient\cell 00c8\cell }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\intbl\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0 \rtlch\fcs1 
-\af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow39\irowband39\lastrow \ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl
+\af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid663104 \trowd \irow40\irowband40\lastrow \ltrrow\ts32\trgaph108\trleft-108\trbrdrt\brdrs\brdrw10 \trbrdrl
 \brdrs\brdrw10 \trbrdrb\brdrs\brdrw10 \trbrdrr\brdrs\brdrw10 \trbrdrh\brdrs\brdrw10 \trbrdrv\brdrs\brdrw10 
 \trftsWidth1\trftsWidthB3\trautofit1\trpaddl108\trpaddr108\trpaddfl3\trpaddft3\trpaddfb3\trpaddfr3\tblrsid6709107\tbllkhdrrows\tbllkhdrcols\tbllknocolband\tblind0\tblindtype3 \clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 
 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4667\clshdrawnil \cellx4559\clvertalt\clbrdrt\brdrs\brdrw10 \clbrdrl\brdrs\brdrw10 \clbrdrb\brdrs\brdrw10 \clbrdrr\brdrs\brdrw10 \cltxlrtb\clftsWidth3\clwWidth4909\clshdrawnil \cellx9468\row 
@@ -615,14 +620,14 @@ Example13doeFunctionExample}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 \cell }
 {\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183  HYPERLINK "}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183\charrsid6884892 https://github.com/AdityaSavara/PEUQSE/blob/master/PEUQSE/UserInput.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid1386183 " }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183 {\*\datafield 
 00d0c9ea79f9bace118c8200aa004ba90b0200000003000000e0c9ea79f9bace118c8200aa004ba90bb2000000680074007400700073003a002f002f006700690074006800750062002e0063006f006d002f004100640069007400790061005300610076006100720061002f004300680065004b0069005000450055005100
-2f0062006c006f0062002f006d00610073007400650072002f004300680065004b00690050004500550051002f00550073006500720049006e007000750074002e00700079000000795881f43b1d7f48af2c825dc485276300000000a5ab0003000000000000000000ff00000000000200a1}}}{\fldrslt {\rtlch\fcs1 
-\af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1386183\charrsid10900245 https://github.com/AdityaSavara/}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1386183\charrsid10900245 /blob/master/}{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1386183\charrsid10900245 /UserInput.py}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183  
+2f0062006c006f0062002f006d00610073007400650072002f004300680065004b00690050004500550051002f00550073006500720049006e007000750074002e00700079000000795881f43b1d7f48af2c825dc485276300000000a5ab0003000000000000000000ff00000000000200a10000}}}{\fldrslt {
+\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1386183\charrsid10900245 https://github.com/AdityaSavara/}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1386183\charrsid10900245 
+/blob/master/}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1386183\charrsid10900245 /UserInput.py}}}\sectd \ltrsect
+\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183  
 \par In some cases, it can be helpful to see the comments on functions inside InverseProblem.py }{\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183  HYPERLINK "}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183\charrsid5319795 
 https://github.com/AdityaSavara/PEUQSE/blob/master/PEUQSE/InverseProblem.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183 " }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183 {\*\datafield 
 00d0c9ea79f9bace118c8200aa004ba90b0200000003000000e0c9ea79f9bace118c8200aa004ba90bbc000000680074007400700073003a002f002f006700690074006800750062002e0063006f006d002f004100640069007400790061005300610076006100720061002f004300680065004b0069005000450055005100
-2f0062006c006f0062002f006d00610073007400650072002f004300680065004b00690050004500550051002f0049006e0076006500720073006500500072006f0062006c0065006d002e00700079000000795881f43b1d7f48af2c825dc485276300000000a5ab0003000000ffff380000005c000000350000008e}}
+2f0062006c006f0062002f006d00610073007400650072002f004300680065004b00690050004500550051002f0049006e0076006500720073006500500072006f0062006c0065006d002e00700079000000795881f43b1d7f48af2c825dc485276300000000a5ab0003000000ffff380000005c000000350000008e0000}}
 }{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1386183\charrsid10900245 https://github.com/AdityaSavara/}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \cs21\ul\cf19\insrsid1386183\charrsid10900245 /blob/master/}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1386183\charrsid10900245 /InverseProblem.py}}}\sectd \ltrsect
 \linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1386183  
@@ -643,17 +648,17 @@ https://github.com/AdityaSavara/PEUQSE/blob/master/PEUQSE/InverseProblem.py}{\rt
 \par }\pard \ltrpar\s18\ql \li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin1440\itap0\pararsid7611801 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801 1 sigma credible intervals: }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid7611801\charrsid7611801 self.stdap_parameter_set:[ 57.40423875 200.72369449]}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801\charrsid7611801 posterior_cov_matrix}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801  is the covariance matrix for the final parameter estimates.
-\par }\pard \ltrpar\s18\ql \li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin720\itap0\pararsid16401875 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16401875 Some other variations of input files are provided mainly so the user ca
-n see how to use the syntax for other features.
-\par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 00a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 7}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639   \lquote normalizes\rquote 
- the histograms to have an area of 1. It is still a 1D representation of the posterior. Since this is a reduced dimensionality representation, for high dimensional cases, the tallest bar may not actually be the highest posterior density value.
+\par }\pard \ltrpar\s18\ql \li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin720\itap0\pararsid16401875 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16401875 
+Some other variations of input files are provided mainly so the user can see how to use the syntax for other features.
+\par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 00a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 7}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639   \lquote normalizes\rquote  the histograms to have an area of 1. It is still a 1D representation of
+ the posterior. Since this is a reduced dimensionality representation, for high dimensional cases, the tallest bar may not actually be the highest posterior density value.
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid14100097 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14100097 
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid7611801 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid15937751 Example 00b  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15937751 
 fitting of the simple polynomial equation for comparison.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid15937751 \line Example 00c  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid474760 Uniform prior / }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15937751 
 Uninformed BPE (essentially a type of CPE) with uninformed prior. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid474760 A uniform prior is designated by having an uncertainty of \'93-1\'94
  and then defining upper and lower bounds for that parameter. Note that for a uniform prior one *must* define upper and lower bounds for any variable that has a uniform prior. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15937751 
-This requires much longer sampling to get a well converged answer and takes about 10 minutes.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid474760  One can also \'93mix and match\'94
- by having some uniform priors by -1 and some regular priors.  The regular priors can have \'93None\'94 for their upper and lower bounds.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15937751 
+This requires much longer sampling to get a well converged answer and takes about 10 minutes.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid474760  One can also \'93mix and match\'94 by having some uniform priors by -1 and some regular priors.  The re
+gular priors can have \'93None\'94 for their upper and lower bounds.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15937751 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12216972 
 \par Example }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12216972\charrsid12216972 00c}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid10895710 7}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12216972  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10895710 . Based on 00c1.}{
 \rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12216972  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12216972 shows an example of}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12216972  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12216972 
@@ -671,20 +676,20 @@ how the mcmc threshold filter is useful}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14
 \insrsid3161595 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid3161595\charrsid3161595 Example 00c11}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3161595  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9663594 Multistart EJS MCMC run. (Based on 00c8)}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid12216972 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid1736098 Example 00d1 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098 Based on Example 00a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 0}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098 
-, shows that if you run the MH mcmc twice in the same file (with an existing PE object), by default the sampling will continue where it left off.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098\charrsid1736098 
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid1736098 Example 00d1 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098 Based on Example 00a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 0}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098 , show
+s that if you run the MH mcmc twice in the same file (with an existing PE object), by default the sampling will continue where it left off.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098\charrsid1736098 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid1736098 Example 00d2 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 This example }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098 
 shows that if you feed the continueSampling argument of true the MH will continue where it left off }{\rtlch\fcs1 \ai\af0 \ltrch\fcs0 \i\insrsid1736098 based on the last sampling record in the directory}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098 .}{
 \rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5196949  It}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639  is intended that a user would }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5196949  run 00d1 first and then 00d2 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9533787 
 directly}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5196949  after, when testing.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639  This example is b}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639\charrsid1736098 ased on }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid4736639 Example 00d1 (and thus Example 00a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 0}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 ), }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1736098 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16275029\charrsid16275029 Example 00d3}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16275029  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 This example }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16275029 
-shows that you can run multiple samplers without saving the previous data. In this example, EJS is run where logs and pickles are saved. The example continues in 00d4.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639  Based on Example 00a}{\rtlch\fcs1 \af0 
-\ltrch\fcs0 \insrsid663104 0}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 , }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16275029 
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16275029\charrsid16275029 Example 00d3}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16275029  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 This example }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16275029 shows that 
+you can run multiple samplers without saving the previous data. In this example, EJS is run where logs and pickles are saved. The example continues in 00d4.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639  Based on Example 00a}{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid663104 0}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 , }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16275029 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16275029\charrsid8068760 Example 00d4}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16275029  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639  This example is meant to be run directly after}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid16275029  Example 00d}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4736639 3}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16275029 , }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8068760 
-shows that you can run multiple samples without saving previous data. In this example, previous run data from EJS is loaded. The MAP is extracted and parameter sets around the MAP are extracted. These parameter sets are then fed into the initial
- guess for all the walkers and ESS is run. This prevents the stuck walkers and better explores the highest posterior density region. }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16275029\charrsid1736098 
+shows that you can run multiple samples without saving previous data. In this example, previous run data from EJS is loaded. The MAP is extracted and parameter sets around the MAP are extracted. These parameter sets are then fed into the initial guess for
+ all the walkers and ESS is run. This prevents the stuck walkers and better explores the highest posterior density region. }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16275029\charrsid1736098 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid1736098 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid8924859 Example 00f1 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8924859 Same as on 00a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 0}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8924859 
 , just a Metrpolis Hastings for comparison for 00f2 and 00f3.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8924859\charrsid8924859 
@@ -698,8 +703,8 @@ rm Random sampling (like Sobol) instead of gridsearch.}{\rtlch\fcs1 \af0 \ltrch\
 \ltrch\fcs0 \insrsid11221932  using LogP optimizer}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8285502 .
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid11221932 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11221932\charrsid8285502 Example 00f}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11221932 6 
 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11221932 Uniform random sampling with optimization at each point using SSR optimizer.
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11221932\charrsid8285502 Example 00f}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11221932 7 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11221932 Uniform random sampling with optimization at each point using NegLogP o
-ptimizer.
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11221932\charrsid8285502 Example 00f}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11221932 7 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11221932 Uniform random sampling with optimization at each point
+ using NegLogP optimizer.
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid8924859 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11221932\charrsid9397399 Example 00f8}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11221932  }{
 \rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6122924 getLogP }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11221932 Sobol sampling.
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11221932\charrsid9397399 Example 00f9}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11221932  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6122924 getLogP}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11221932  Astoidal sampling. 
@@ -709,8 +714,8 @@ sampling with Shell sampling. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11221932\ch
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid7611801 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid8924859\charrsid1736098 
 \par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid13245668 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
 \rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7611801\charrsid7611801 #TODO:}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801\charrsid7611801  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801 We should c}{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\insrsid7611801\charrsid7611801 hange example 1a }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801 to have}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801\charrsid7611801 
- a more simple example of importing data from a file. Should just use numpy getfromcsv and then specify the column number where the data is for errors etc.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801\charrsid15937751 
+\insrsid7611801\charrsid7611801 hange example 1a }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801 to have}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801\charrsid7611801  a more simple example
+ of importing data from a file. Should just use numpy getfromcsv and then specify the column number where the data is for errors etc.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801\charrsid15937751 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13245668\charrsid14318265 Example 1}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid14318265\charrsid14318265 a}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13245668\charrsid14318265 :}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid13245668  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1655367 This example shows users how to do a Bayesian Parameter estimation using Markov Chain Monte Carlo (basically, using statistical sampling of the parameter space). }{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid5003270 For this example, new users do not need to understand }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1655367 MCMC nor understand the example\rquote s}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5003270  model }{\rtlch\fcs1 \af0 \ltrch\fcs0 
@@ -727,8 +732,8 @@ the same parameters in exactly the same order.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \in
 \ltrch\fcs0 \insrsid16666857\charrsid16666857 responses_observed}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857 .  If for example  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857\charrsid1655367 'simulateByInputParametersOnlyFunction'}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid16666857   returns both an abscissa and a set of simulated responses, then a }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857\charrsid16666857 'simulationOutputProcessingFunction'}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857 
  must be provided which will extract or produce something with the same size as responses_observed.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7611801 
-\par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857 After }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1655367 the UserInput }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857 is defined, it is}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1655367 
- passed as an argument to create a parameter estimation object which we call PE_object (an arbitrary choice). 
+\par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857 After }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1655367 the UserInput }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857 is defined, it is}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1655367  passed as an argument to
+ create a parameter estimation object which we call PE_object (an arbitrary choice). 
 \par Next, we use }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13840911 the command }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1655367 PE_object.doMetropolisHastings()
 \par This will run the MCMC using the default choices that were given for mcmc.  
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13840911 Finally, we use the command PE_object.createAllPlots() to create the default plots for whatever type of choices we have made.  In this case, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4607868 
@@ -736,18 +741,19 @@ looks focus on just the final plot. We}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid138
 \par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid13840911 \hich\af31506\dbch\af0\loch\f31506 1)\tab}}\pard\plain \ltrpar\s17\ql \fi-360\li720\ri0\sa160\sl259\slmult1
 \widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls2\adjustright\rin0\lin720\itap0\pararsid13840911\contextualspace \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid13840911 The}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4607868  observed data from experiments }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13840911 
-\par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid4607868 \hich\af31506\dbch\af0\loch\f31506 2)\tab}}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4607868 
-The simulation from mu_guess which is the initial guess (which is taken as the prior if no other initial guess was provided)
+\par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid4607868 \hich\af31506\dbch\af0\loch\f31506 2)\tab}}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4607868 The simulation from mu_guess which is th
+e initial guess (which is taken as the prior if no other initial guess was provided)
 \par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid4607868 \hich\af31506\dbch\af0\loch\f31506 3)\tab}
 The MAP result, which is the output using the parameter set which has the highest posterior probability.  This is the BPE equivalent of a \'93best fit\'94
-\par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid4607868 \hich\af31506\dbch\af0\loch\f31506 4)\tab}The mu_AP result, which is the highest expected value.  In practice, we ide
-ally want the mu_AP result and MAP result to be approximately the same.  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7096317 
+\par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid4607868 \hich\af31506\dbch\af0\loch\f31506 4)\tab}The mu_AP result
+, which is the highest expected value.  In practice, we ideally want the mu_AP result and MAP result to be approximately the same.  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7096317 
 \par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid7096317 \hich\af31506\dbch\af0\loch\f31506 a.\tab}}\pard \ltrpar\s17\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
 \widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls2\ilvl1\adjustright\rin0\lin1440\itap0\pararsid7096317\contextualspace {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7096317 Details beyond the scope of this tutorial: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4607868 
 When they are not the same, it usually means one of a few things: a) that more mcmc sampling must be done }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7096317 to get a better exploration of the response surface, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4607868 
 b) that the response surface is not well behaved }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7096317 and is hard to sample }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4607868 (this issue is described a bit in the next tutorial), c) that the }{\rtlch\fcs1 \af0 
-\ltrch\fcs0 \insrsid7096317 mcmc step length(s) are not a good match to the curvature of the response surface so it is not b
-eing sampled well, d) that the model is very sensitive to parameter choices, e) that the posterior probability is asymmetric (it may even be multi-modal).}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4607868 
+\ltrch\fcs0 \insrsid7096317 mcmc step length(s) are not a good ma
+tch to the curvature of the response surface so it is not being sampled well, d) that the model is very sensitive to parameter choices, e) that the posterior probability is asymmetric (it may even be multi-modal).}{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid4607868 
 \par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid13245668 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
 \rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1655367 For those curious about the model, this is a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5003270 n example with two states.  Each state has}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857  a}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid5003270  \'93base\'94 activation ener}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16666857 gy}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5003270 
@@ -766,8 +772,8 @@ This is the same as example 1a, except that now we use}{\rtlch\fcs1 \af0 \ltrch\
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid657468 This set of choices will ignore the mcmc settings, and will not include a mu_AP in the output (at this time).  
 \par It is anticipated that in the future the gridsearch will provide a mu_AP value.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16143665 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid2162960 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16143665\charrsid14831571 Example 1}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16143665 d: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16143665 This is like Example 1b, only it uses the transient
- kinetics feature that converts things to an integral form in an intermediate step. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6891876  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16143665\charrsid16143665 
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16143665\charrsid14831571 Example 1}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid16143665 d: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16143665 
+This is like Example 1b, only it uses the transient kinetics feature that converts things to an integral form in an intermediate step. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6891876  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16143665\charrsid16143665 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid2162960 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12922612 Example 2}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12933927 a}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12922612 :}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid1310745  }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid1310745 Example 2 is similar to Example 1.  The only major different is that example 2 shows that it is possible to perform a simulation using Cantera.  It is important to note that the simulation function is called }{\rtlch\fcs1 \af0 \ltrch\fcs0 
@@ -777,9 +783,8 @@ This is the same as example 1a, except that now we use}{\rtlch\fcs1 \af0 \ltrch\
 \ltrch\fcs0 \insrsid1310745  function.
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12012550 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12012550 Example 3a: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12012550\charrsid12012550 is a variation of Example 1 where }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12012550 the }{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\insrsid9917352 integral is used instead of the rate}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11272368  for mcmc}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12459525 .  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13570223 
-3a1 is just a quick MH run for testing purposes. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12459525 3a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3109765 2}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12459525  is MH and 3a3 is ESS.}{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\insrsid12012550 
+\insrsid9917352 integral is used instead of the rate}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11272368  for mcmc}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12459525 .  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13570223 3a1 is just a quick MH ru
+n for testing purposes. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12459525 3a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3109765 2}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12459525  is MH and 3a3 is ESS.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12012550 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11272368 Example 3}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid4074902 b}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11272368 : }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11272368\charrsid12012550 
 is a variation of Example 1 where }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11272368 the integral is used instead of the rate for optimization
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid4074902 Example 3c: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4074902\charrsid12012550 is a variation of Example 1 where }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4074902 
@@ -790,23 +795,22 @@ the indices that are noted are allowed to change.  This reducedParameterSpace fe
 \insrsid5922758\charrsid4074902 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid941537 
 \par Example 3c_SSR: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid941537 is a variation of Example 3c using sum of squared residuals (SSR) for conventional parameter estimation (CPE). That is, fitting be minimizing the sum of squared residuals.  As of June 13}{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \super\insrsid941537\charrsid941537 th}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid941537  2020,
-only a primitive SSR is implemented with no weighting supported.  However, it would be nice if magnitude and variance weighted SSR is included in the future through efforts of volunteers.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2162960\charrsid941537 
-
+\rtlch\fcs1 \af0 \ltrch\fcs0 \super\insrsid941537\charrsid941537 th}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid941537  2020,only a primitive SSR is implemented with no weighting supported.  However, it wo
+uld be nice if magnitude and variance weighted SSR is included in the future through efforts of volunteers.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2162960\charrsid941537 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid941537 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12661354 Example 3}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid2162960 d}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12661354 : }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12661354\charrsid12012550 
 is a variation of Example 1 where }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12661354 the integral is used instead of the rate for grid search optimization
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid11084368 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid5917578 Example 4: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid146943\charrsid146943 A}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5917578\charrsid11993403  Cantera Example}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid146943 
- with coverage dependence syntax, but not a realistic model.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid5917578 
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid5917578 Example 4: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid146943\charrsid146943 A}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5917578\charrsid11993403  Cantera Example}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid146943  w
+ith coverage dependence syntax, but not a realistic model.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid5917578 
 \par Example 5}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7499473 : }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8218151\charrsid8218151 A}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8982304\charrsid11993403  Cantera Example}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8218151 
  with a more realistic coverage dependence}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8204520  model.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid5917578 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid11561285 Example 6: }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid11561285\charrsid11803067 Cantera Example}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid11803067  with coverage dependent activation energy offsets.}{
 \rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2162960  The basic flow of this example is like this:
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid15957358 PEUQSE}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2162960  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527 imports }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527\charrsid2121527 
 integrated_cantera_simulation_wrapper_example6}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527  so it can call }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2162960  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2162960\charrsid2162960 
-integrated_cantera_simulation_wrapper_example6}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2162960  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527 which calls }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527\charrsid2121527 cantera
-_simulation_wrapper_example6}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2162960 
+integrated_cantera_simulation_wrapper_example6}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2162960  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527 which calls }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527\charrsid2121527 
+cantera_simulation_wrapper_example6}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2121527  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2162960 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid15210772 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid11933553 In this example, Ea2, A2, and gamma2 are not used.
 \par 
@@ -826,8 +830,8 @@ canteraKineticsParametersParser.populatePiecewiseCoverageDependence}{\rtlch\fcs1
 \insrsid6836846\charrsid6836846 _and_SimulatePFRorTPRwithCantera}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid6836846  does the actual simulations during the first iteration, and }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid6836846\charrsid6836846 
 modify_reactions_and_SimulatePFRorTPRwithCantera}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid6836846  does the actual simulations during later iterations}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2106192  (by calling }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
 \insrsid2106192\charrsid2106192 simulatePFRorTPRwithCantera}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid2106192  after modifying the reactions)}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid6836846 .}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid393755 
- At present (April 2020), even the modify case requires making a new cantera model each time because the function }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid13060301\charrsid13060301 modify_reaction}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid13060301  does
- not yet work for  surface reactions within cantera.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid12332759 
+ At present (April 2020), even the modify case requires making a new cantera model each time because the function }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid13060301\charrsid13060301 modify_reaction}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid13060301 
+ does not yet work for  surface reactions within cantera.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid12332759 
 \par It then calls }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid12332759\charrsid12332759 simulatePFRorTPRwithCantera}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid12332759 
 \par 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid6119657 #TODO: put all of the model files }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \insrsid11749639 in this directory so that we don\rquote t need to use \'93}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
@@ -868,16 +872,15 @@ Final results from doOptimizeNegLogP: [ 1.48560697e+01  9.99999994e+09  1.468087
 \ab\af0 \ltrch\fcs0 \b\insrsid16322148 : }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16322148 This is builtoff of  7b, but shows that we can input a full covariance matrix that is asymmetric: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16322148\charrsid16322148 
 UserInput.model['InputParametersPriorValuesUncertainties'] = np.array([[1,0.2], [0.3,1]])}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16322148 
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2162960 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16322148 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid8458191 Example 7d: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8458191 
-This is a custom log likelihood example. In this simple example, we take Example 7b and then double the variance of the responses.  We see that the posterior is widened. This is just a te
-st case. Doubling the variance would not require this feature.  However, if one wanted to change the likelihood to be asymmetric (for example setting it to be zero for a certain range of the response) one could do so using this function.}{\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid5136280 
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid8458191 Example 7d: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8458191 This is a custom log likelihood example. In this simple example, we take Example 7b and then double the variance of the respons
+es.  We see that the posterior is widened. This is just a test case. Doubling the variance would not require this feature.  However, if one wanted to change the likelihood to be asymmetric (for example setting it to be zero for a certain range of the resp
+onse) one could do so using this function.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5136280 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8458191 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12391059 Example 7e: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12391059 This 
-is built off of 7d: now we take the log likelihood and set it to a probability of 0 if the sum of the responses is greater than 6.  Note that a probability of 0 requires a log likelihood of negative infinity, and that we set the likelihood accordingly.}{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16452461   We
- see from the scatter plots and other plots that an asymmetric output results in the 2D posterior since having a high value for parameter 1 now requires a low value for parameter 2 and vice versa.  Making the inequality \'93>3\'94 rather than \'93>6\'94}{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12391059  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16452461 will make the posterior more narrow and  ridge-like.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12391059\charrsid12391059 
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12391059 Example 7e: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12391059 
+This is built off of 7d: now we take the log likelihood and set it to a probability of 0 if the sum of the responses is greater than 6.  Note that a probability of 0 requires a log likelihood of negati
+ve infinity, and that we set the likelihood accordingly.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16452461 
+  We see from the scatter plots and other plots that an asymmetric output results in the 2D posterior since having a high value for parameter 1 now requires a low value for parameter 2 and vice versa.  Making the inequality \'93>3\'94 rather than \'93>6
+\'94}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12391059  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16452461 will make the posterior more narrow and  ridge-like.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12391059\charrsid12391059 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12391059\charrsid8458191 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid10884226 Example 8: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10884226 In this example, a python function with an activation energy }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15678010 
 that has gamma depending on coverage and mcmc.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14318265 
@@ -891,8 +894,8 @@ reducedResponseSpace\'94 feature which allows the posterior to be based on only
 This example is for Design of Experiments}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15629469  (conducted manually, not recommended)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6970424 .}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13710893 
   The runfile iterates across several temperatures and shows that the posterior distribution changes with temperature.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6970424 
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2162960 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6970424 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid1771136\charrsid1771136 Example 12: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1771136\charrsid1771136 Catalytic membrane reactor example.  Example12withScaling2E3 is primarily used (although ma
-ny different scaling schemes work equally well).}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1771136 
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid1771136\charrsid1771136 Example 12: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1771136\charrsid1771136 Catalytic membrane reactor example.  Example12withScaling2E3 is primarily used (altho
+ugh many different scaling schemes work equally well).}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1771136 
 \par 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid14303575\charrsid14303575 Example13doeFunctionExample}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid14303575  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14303575 shows how to use the design of experiments}{\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid2162941  (doe)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14303575  feature.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7556069  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5132765 
@@ -909,15 +912,14 @@ ny different scaling schemes work equally well).}{\rtlch\fcs1 \af0 \ltrch\fcs0 \
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid15684665 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 The two files }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665\charrsid10292260 
 runfile_Example13_doe_function_meshgrid_1.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665  and }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665\charrsid10292260 runfile_Example13_doe_function_xyz_1.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 
  each show how to use the syntax for the scanning function which scans across different parameter modulations, and also }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15607315 (commented out) }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 
-how to do a manual retrieval of an info_gain plot for a single parameter modulation. (an addition is used for the pertur
-bation but a set of posterior means could be fed directly).  When KL_divergence info_gain is being used, these two files use only the sum. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665\charrsid9458816 
-UserInput.doe_settings['info_gains_matrices_multiple_parameters'] = 'sum'}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 
+how to do a manual retrieval of an info_gain plot for a single parameter modulation. (an addition is used for the perturbation but a set of posterior means could be fed directly).  When KL_divergence info_gain i
+s being used, these two files use only the sum. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665\charrsid9458816 UserInput.doe_settings['info_gains_matrices_multiple_parameters'] = 'sum'}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 
 \par 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665\charrsid9458816 runfile_Example13_doe_function_meshgrid_2}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665  and }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665\charrsid9458816 
-runfile_Example13_doe_function_xyz_2}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 
- are runfiles showing how to do a manual retrieval of a single perturbation (not modulating parameters, systematically, but still doing a conditions grid).  These two are for
- a single positive standard deviation perturbation, and the main point of these two runfiles is that }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665\charrsid9458816 UserInput.doe_settings['info_gains_matrices_multiple_parameters'] = '}{\rtlch\fcs1 \af0 
-\ltrch\fcs0 \insrsid15684665 each\rquote  \line such that there is an info_gain graph made for each parameter, not just the sum.
+runfile_Example13_doe_function_xyz_2}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665  are runfiles showing how to do a manual retrieval 
+of a single perturbation (not modulating parameters, systematically, but still doing a conditions grid).  These two are for a single positive standard deviation perturbation, and the main point of these two runfiles is that }{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid15684665\charrsid9458816 UserInput.doe_settings['info_gains_matrices_multiple_parameters'] = '}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 each\rquote  \line such that there is an info_gain graph made for each parameter, not just the sum.
+
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2162960 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid15607315 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15607315\charrsid999283 runfile_Example13_doe_function_meshgrid_3.py}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid15607315  and }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15607315\charrsid999283 runfile_Example13_doe_function_xyz_3.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15607315  use the scanner with the \lquote each\rquote 
@@ -931,8 +933,8 @@ runfile_Example13_doe_function_xyz_2}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684
 \insrsid9774597\charrsid9774597 runfile_Example13_doe_function_meshgrid_1.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4003093 :}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9774597 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9774597\charrsid9774597 runfile_Example13_doe_function_meshgrid_1_parallel_conditions_exploration.py
 \par runfile_Example13_doe_function_meshgrid_1_parallel_parameter_modulation.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4263079\charrsid9774597 
-\par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2162960 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9774597 They use mpi with -n 26 and -n 10, respecti
-vely, as shown if they are run with 1 processor (-n 1) or without mpi.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 
+\par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2162960 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9774597 
+They use mpi with -n 26 and -n 10, respectively, as shown if they are run with 1 processor (-n 1) or without mpi.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15684665 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14186805 For doe parallelization:
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3230454 One can }{\rtlch\fcs1 \ai\af0 \ltrch\fcs0 \i\insrsid3230454 only }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3230454 parallelize conditions exploration or parameter exploration }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid16152450 when doing design of experiments.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14186805  One }{\rtlch\fcs1 \ai\af0 \ltrch\fcs0 \i\insrsid14186805 cannot}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14186805  parallelize mcmc at the same time.  }{
@@ -941,17 +943,16 @@ vely, as shown if they are run with 1 processor (-n 1) or without mpi.}{\rtlch\f
 \af0 \ltrch\fcs0 \insrsid7019953 mpi to be on and }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5838503 one option to true at a time and try to run }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13199200 the python runfile as a regular runfile}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid5838503 ), and then to use the choice which is most close to the number of processors available.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5838503\charrsid3230454 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10292260 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7545592 Example 14: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7545592 
-This example uses the various states of CO adsorption on Fe3O4 and the redhead peak maximum method to estimate the DeltaH ads of States 1 through 3.  For 
-state 4, bounds on the residence time are used, and then the peak maximum is still calculated at the end based on the posterior.  Both model and experimental uncertainties are included.
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7545592 Example 14: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7545592 This example uses the various states of CO adsorption on Fe3O4 and the redhead peak maximum method to estimate
+ the DeltaH ads of States 1 through 3.  For state 4, bounds on the residence time are used, and then the peak maximum is still calculated at the end based on the posterior.  Both model and experimental uncertainties are included.
 \par 
-\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid3094343 Example 15}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3094343 : This example is based on Example 3 (two states), but clea
-ns up the model files and also adds in a parameter for the ratio between the two states.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7545592 
+\par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid3094343 Example 15}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3094343 : This example 
+is based on Example 3 (two states), but cleans up the model files and also adds in a parameter for the ratio between the two states.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7545592 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15418431 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid15418431\charrsid15418431 Models 1}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid15418431 6 through 22 correspond to the Ethanal desorption example from the paper \line }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
-\b\insrsid15957358 PEUQSE}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid15418431  Intro 1.  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15418431 They are organized as follows. Directories 16,17,18 are for Model A
-, Model B, Model C with experimental errors constant at 0.0025.  Directories 19,20,21 are for Model A, Model B, Model C with experimental errors constant at 0.0050.  Directory 22 is for model C with experimental errors constant at 0.00125.}{\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid15418431\charrsid15418431 
+\b\insrsid15957358 PEUQSE}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid15418431  Intro 1.  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15418431 
+They are organized as follows. Directories 16,17,18 are for Model A, Model B, Model C with experimental errors constant at 0.0025.  Directories 19,20,21 are for Mode
+l A, Model B, Model C with experimental errors constant at 0.0050.  Directory 22 is for model C with experimental errors constant at 0.00125.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15418431\charrsid15418431 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10881300 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid10881300 {\*\bkmkstart _Hlk39651645}Example 16}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid931714 a_BPE_grid}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid10881300 :}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid338454  }{
 \rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3876650 1,361,367 grid points.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid338454 This example }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10174498 takes }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8867026 on the order of}{
@@ -989,12 +990,13 @@ InputParameterPriorValues_upperBounds}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6762
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid338454 Example 16b: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7537644 Does a Nelder-Mead optimization on the logP from 16a.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13189456  Note that }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid338454\charrsid7537644 
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2162960 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7878561 
-\par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid7878561 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7878561 Example 17 directory is like Exa
-mple 16, only the coverage dependence (with gamma coefficients) is based upon total coverage rather than that species\rquote  coverage.
+\par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid7878561 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7878561 
+Example 17 directory is like Example 16, only the coverage dependence (with gamma coefficients) is based upon total coverage rather than that species\rquote  coverage.
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2162960 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7878561 
-\par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4591737\charrsid4591737 runfile_Example17a_BPE_singlePoint.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4591737  uses the feature for evaluating (and then plotting the simulation results) of a single p
-oint versus the observed data. This is}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3740216  useful when testing a function.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3219964  It\rquote s probably a good practice to include it in the runfile before an mcmc etc}{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4014564  to make sure things at least work for the initial point all the way to plotting.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4591737 
+\par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4591737\charrsid4591737 runfile_Example17a_BPE_singlePoint.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4591737 
+ uses the feature for evaluating (and then plotting the simulation results) of a single point versus the observed data. This is}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3740216  useful when testing a function.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3219964 
+ It\rquote s probably a good practice to include it in the runfile before an mcmc etc}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4014564  to make sure things at least work for the initial point all the way to plotting.}{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid4591737 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12873310 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12873310\charrsid12873310 Example }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12873310 1}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid8462065 9}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12873310  }{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid8462065 Like Example 16, with experimental uncertainty of 0.0050}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7087962 
@@ -1020,28 +1022,28 @@ The 21c directories are 2 dimensional mcmc sampling of slices of the posterior a
 \par }{\rtlch\fcs1 \ab\af37 \ltrch\fcs0 \b\insrsid7175132\charrsid7109676 Example 22: }{\rtlch\fcs1 \af37 \ltrch\fcs0 \insrsid7175132\charrsid7109676 Like Example 18}{\rtlch\fcs1 \af37 \ltrch\fcs0 \insrsid6258573\charrsid7109676  and 21}{\rtlch\fcs1 \af37 
 \ltrch\fcs0 \insrsid7175132\charrsid7109676 , with experimental uncertainty of 0.00125
 \par }\pard\plain \ltrpar\ql \li0\ri0\nowidctlpar\wrapdefault\faauto\rin0\lin0\itap0\pararsid1771136 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af37 \ltrch\fcs0 
-\b\dbch\af45\insrsid1771136\charrsid7109676 
-\par }\pard \ltrpar\ql \li0\ri0\nowidctlpar\wrapdefault\faauto\rin0\lin0\itap0\pararsid2493548 {\rtlch\fcs1 \ab\af37 \ltrch\fcs0 \b\dbch\af45\insrsid1771136\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 Example 23: }{\rtlch\fcs1 \af37 \ltrch\fcs0 
-\dbch\af45\insrsid1771136\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 Catalytic membr\hich\af31506\dbch\af45\loch\f31506 ane reactor example with all three parameters inferred for testing to methods to calculate information gain.}{\rtlch\fcs1 
-\af37 \ltrch\fcs0 \dbch\af45\insrsid539666\charrsid7109676 
-\par }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid2493548\charrsid7109676 
-\par }\pard \ltrpar\ql \li0\ri0\nowidctlpar\wrapdefault\faauto\rin0\lin0\itap0\pararsid14370553 {\rtlch\fcs1 \ab\af37 \ltrch\fcs0 \b\dbch\af45\insrsid14370553\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 Example 24: }{\rtlch\fcs1 \af37 \ltrch\fcs0 
-\dbch\af45\insrsid13521263\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 A simple example }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid12864229\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 using a First Order}{\rtlch\fcs1 \af37 
-\ltrch\fcs0 \dbch\af45\insrsid13521263\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506  }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid12864229\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 R}{\rtlch\fcs1 \af37 \ltrch\fcs0 
-\dbch\af45\insrsid13521263\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 edhead }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid12864229\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 peak maximum }{\rtlch\fcs1 \af37 \ltrch\fcs0 
-\dbch\af45\insrsid13521263\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 approximation.}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid14370553\charrsid7109676 
+\b\dbch\af44\insrsid1771136\charrsid7109676 
+\par }\pard \ltrpar\ql \li0\ri0\nowidctlpar\wrapdefault\faauto\rin0\lin0\itap0\pararsid2493548 {\rtlch\fcs1 \ab\af37 \ltrch\fcs0 \b\dbch\af44\insrsid1771136\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 Example 23: }{\rtlch\fcs1 \af37 \ltrch\fcs0 
+\dbch\af44\insrsid1771136\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 Catalytic membr\hich\af31506\dbch\af44\loch\f31506 ane reactor example with all three parameters inferred for testing to methods to calculate information gain.}{\rtlch\fcs1 
+\af37 \ltrch\fcs0 \dbch\af44\insrsid539666\charrsid7109676 
+\par }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid2493548\charrsid7109676 
+\par }\pard \ltrpar\ql \li0\ri0\nowidctlpar\wrapdefault\faauto\rin0\lin0\itap0\pararsid14370553 {\rtlch\fcs1 \ab\af37 \ltrch\fcs0 \b\dbch\af44\insrsid14370553\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 Example 24: }{\rtlch\fcs1 \af37 \ltrch\fcs0 
+\dbch\af44\insrsid13521263\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 A simple example }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid12864229\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 using a First Order}{\rtlch\fcs1 \af37 
+\ltrch\fcs0 \dbch\af44\insrsid13521263\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506  }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid12864229\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 R}{\rtlch\fcs1 \af37 \ltrch\fcs0 
+\dbch\af44\insrsid13521263\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 edhead }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid12864229\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 peak maximum }{\rtlch\fcs1 \af37 \ltrch\fcs0 
+\dbch\af44\insrsid13521263\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 approximation.}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid14370553\charrsid7109676 
 \par }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid6250917 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 
 \ab\af37 \ltrch\fcs0 \b\insrsid14370553\charrsid7109676 
 \par }\pard\plain \ltrpar\ql \li0\ri0\nowidctlpar\wrapdefault\faauto\rin0\lin0\itap0\pararsid14370553 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af37 \ltrch\fcs0 
-\b\dbch\af45\insrsid14370553\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 Example 25: }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid14370553\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 Uniform priors example}{\rtlch\fcs1 \af37 
-\ltrch\fcs0 \dbch\af45\insrsid5792686\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 . Took Example14_State_2 w\hich\af31506\dbch\af45\loch\f31506 
+\b\dbch\af44\insrsid14370553\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 Example 25: }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid14370553\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 Uniform priors example}{\rtlch\fcs1 \af37 
+\ltrch\fcs0 \dbch\af44\insrsid5792686\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 . Took Example14_State_2 w\hich\af31506\dbch\af44\loch\f31506 
 hich is in this directory as runfile_Example25_Example14_State2_Original_mcmc.py and then made runfile_Example25_Example14_State2_Uniform_Par1_mcmc.py as an example where the first parameter is set as having a uniform distribution}{\rtlch\fcs1 \af37 
-\ltrch\fcs0 \dbch\af45\insrsid10567217\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506  (from 11 to 19)}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid5792686\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 .  }{\rtlch\fcs1 \af37 \ltrch\fcs0 
-\dbch\af45\insrsid12478317\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 Th}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid9333173\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 is example was just chosen because it runs quickly.}{
-\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid10567217\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 
- With the bounds as they are presently set, the MAP is at one of the bounds. As in other contexts, users should be suspicious of any parameter estimation that goes to the bounds for that parameter. If one \hich\af31506\dbch\af45\loch\f31506 
-widens the parameter bounds to 0 and 100}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid4338887\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506 , the MAP is no longer at a bound.}{\rtlch\fcs1 \af37 \ltrch\fcs0 
-\dbch\af45\insrsid9661017\charrsid7109676 \hich\af31506\dbch\af45\loch\f31506   }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af45\insrsid14370553\charrsid7109676 
+\ltrch\fcs0 \dbch\af44\insrsid10567217\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506  (from 11 to 19)}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid5792686\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 .  }{\rtlch\fcs1 \af37 \ltrch\fcs0 
+\dbch\af44\insrsid12478317\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 Th}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid9333173\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 is ex\hich\af31506\dbch\af44\loch\f31506 
+ample was just chosen because it runs quickly.}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid10567217\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 
+ With the bounds as they are presently set, the MAP is at one of the bounds. As in other contexts, users should be suspicious of any parameter estimation that goes to the bounds for that parameter. If one widen\hich\af31506\dbch\af44\loch\f31506 
+s the parameter bounds to 0 and 100}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid4338887\charrsid7109676 \hich\af31506\dbch\af44\loch\f31506 , the MAP is no longer at a bound.}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid9661017\charrsid7109676 
+\hich\af31506\dbch\af44\loch\f31506   }{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af44\insrsid14370553\charrsid7109676 
 \par }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid6250917 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 
 \ltrch\fcs0 \b\insrsid14370553 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid4540874 Example 26: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4540874 Based on Example 0, but with parallel sampling.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12143652  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3692480 
@@ -1068,10 +1070,10 @@ widens the parameter bounds to 0 and 100}{\rtlch\fcs1 \af37 \ltrch\fcs0 \dbch\af
 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676\charrsid7109676 mpiexec -n  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3894357 10}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676\charrsid7109676   python runfile_Example_26c2_BPE_MH_}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid15934089 g}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676\charrsid7109676 rid_with_Parallel.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676\charrsid4540874 
-\par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid13987176 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676 This exam
-ple case runs in 1 minute, and on a regular desktop computer is actually slower than running the non-parallel version (}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676\charrsid7109676 runfile_Example_26c1_BPE_MH_}{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\insrsid15934089 g}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676\charrsid7109676 rid_no_Parallel.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676 ).  However, for longer simulations with large grids of slow simulations on many processor
-s, it will of course be faster to run them in parallel than in serial.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid82400 
+\par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid13987176 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676 This example case runs in
+ 1 minute, and on a regular desktop computer is actually slower than running the non-parallel version (}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676\charrsid7109676 runfile_Example_26c1_BPE_MH_}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15934089 g}{
+\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676\charrsid7109676 rid_no_Parallel.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7109676 ).  However, for longer simulations with large grids of slow simulations on many processors, it will of co
+urse be faster to run them in parallel than in serial.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid82400 
  There is an example for continuing the simulation after that with parallel processing (this continues each grid point separately from where it is located, so is genuine continuation).
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid82400\charrsid7109676 mpiexec -n  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid82400 10}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid82400\charrsid7109676   python }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid82400\charrsid82400 
 runfile_Example_26c3_BPE_MH_Grid_with_Parallel_continueSampling.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid82400 
@@ -1100,13 +1102,13 @@ See the two existing graph directories provided with the repository. }{\rtlch\fc
 }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid683832 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16594485 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 Fo}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2710254 r}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488  example 28, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2710254 t}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 
-h}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16594485 is problem }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 is better }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16594485 solved through }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 
-using an additional run for further sampling the found mode.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3742161   T}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2118400 he graphs that are in the directory of }{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\insrsid2118400\charrsid2118400 graphs_EJS}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3742161  had }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2118400 stuck walkers}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15036281  after a large sampling of 1,000,000 samples}{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2118400 . }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14377843 This }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 first MCMC run }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2118400 which has stuck walkers can}{\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid10510488  treated }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14377843 as an exploratory simulation where the outputs will retained further: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 a}{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\insrsid14377843 n additional }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 sampling }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12189724 can }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14377843 then }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12189724 be}{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488  initialized from the area of the }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4663496 main }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 mode}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6948938 
+h}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16594485 is problem }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 is better }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16594485 solved through }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 using an add
+itional run for further sampling the found mode.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3742161   T}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2118400 he graphs that are in the directory of }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2118400\charrsid2118400 
+graphs_EJS}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3742161  had }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2118400 stuck walkers}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15036281  after a large sampling of 1,000,000 samples}{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid2118400 . }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14377843 This }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 first MCMC run }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2118400 which has stuck walkers can}{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid10510488  treated }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14377843 as an exploratory simulation where the outputs will retained further: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14377843 n additional }
+{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 sampling }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12189724 can }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14377843 then }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12189724 be}{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid10510488  initialized from the area of the }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4663496 main }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10510488 mode}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6948938 
 , using a feature for specifying the walker starting points}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid16594485 . }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5463768 
 \par 
 \par In }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5463768\charrsid5463768 runfile_316_EJSresampling.py}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5463768  we run an EJS again, but this time start}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13464694  the}{\rtlch\fcs1 \af0 
@@ -1130,8 +1132,8 @@ Using Parallel Processing (including MPI){\*\bkmkend _Toc56022179}
 \ltrch\fcs0 \insrsid7092480 MCMC search}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10830751 : in this case, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7092480 separate walkers are conducted, burn in is removed and results are consolidated.
 \par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid7092480 \hich\af31506\dbch\af0\loch\f31506 b.\tab}
 For a multistart/gridsearch (which can be mcmc). One processor rank per initial point. Only best initial point is reported [all are retained]. By default, the best point is the one with the highest map_logP value.
-\par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid7092480 \hich\af31506\dbch\af0\loch\f31506 c.\tab}
-Currently, nested parallel processing is not supported (that is, one cannot do a multistart that is parallelized and then further parallelize each mcmc run within it).
+\par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid7092480 \hich\af31506\dbch\af0\loch\f31506 c.\tab}Currently
+, nested parallel processing is not supported (that is, one cannot do a multistart that is parallelized and then further parallelize each mcmc run within it).
 \par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid7092480 \hich\af31506\dbch\af0\loch\f31506 2)\tab}}\pard \ltrpar\s17\ql \fi-360\li720\ri0\sa160\sl259\slmult1
 \widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls6\adjustright\rin0\lin720\itap0\pararsid8805699\contextualspace {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7092480 Currently, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8805699 Parallel processing }{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid7092480 is only supported through MPI}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1313789  and the Example 27 way}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8805699 . To use MPI, you should first install MPI. 
@@ -1141,7 +1143,7 @@ Currently, nested parallel processing is not supported (that is, one cannot do a
 \widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls6\ilvl2\adjustright\rin0\lin2160\itap0\pararsid16153708\contextualspace {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1391864 If using windows, install MS MPI. You\rquote 
 ll need to install two files that can be downloaded }{\field{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1391864  HYPERLINK "https://www.microsoft.com/en-us/download/details.aspx?id=57467" }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1391864 {\*\datafield 
 00d0c9ea79f9bace118c8200aa004ba90b0200000003000000e0c9ea79f9bace118c8200aa004ba90b96000000680074007400700073003a002f002f007700770077002e006d006900630072006f0073006f00660074002e0063006f006d002f0065006e002d00750073002f0064006f0077006e006c006f00610064002f00
-640065007400610069006c0073002e0061007300700078003f00690064003d00350037003400360037000000795881f43b1d7f48af2c825dc485276300000000a5ab000300a40080005900340065000000006c330f0000000e0000ff006900f2005c88100000036c000000000000f0000000736922ff00ff007d6800}}
+640065007400610069006c0073002e0061007300700078003f00690064003d00350037003400360037000000795881f43b1d7f48af2c825dc485276300000000a5ab000300a40080005900340065000000006c330f0000000e0000ff006900f2005c88100000036c000000000000f0000000736922ff00ff007d68000000}}
 }{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid1391864\charrsid1391864 here}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1391864  as of Oct 2020}{\rtlch\fcs1 
 \af0 \ltrch\fcs0 \insrsid10498384  (install the sdk one first).}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1391864 
 \par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1391864\charrsid1391864 \hich\af0\dbch\af0\loch\f0 1.\tab}}\pard \ltrpar
@@ -1185,10 +1187,10 @@ It is good to try a multistart with doOptimizeSSR if the regular doOptimizeSSR d
 \af0 \ltrch\fcs0 \insrsid15170562  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid920351  with initial point distributions of uniform, astroidal, or }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15170562 gridsearch with searchType = }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid15170562\charrsid15158197 'getLogP'}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15170562  . This will give you an idea of how long it takes to acquire each datapoint.
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid920351 \hich\af31506\dbch\af0\loch\f31506 i.\tab}}\pard \ltrpar
-\s18\ql \fi-180\li2160\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl2\adjustright\rin0\lin2160\itap0\pararsid15170562 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid920351 For more than 3 parameters, uniform and astroidal should be used, and grid sh
-ould not even be considered.
-\par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid920351 \hich\af31506\dbch\af0\loch\f31506 ii.\tab}If using only 2 or 3 parameters, c}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15170562 
-onsider a custom grid with on the order of 10 radii per parameter. This will give you some idea of the distribution.
+\s18\ql \fi-180\li2160\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl2\adjustright\rin0\lin2160\itap0\pararsid15170562 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid920351 
+For more than 3 parameters, uniform and astroidal should be used, and grid should not even be considered.
+\par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid920351 \hich\af31506\dbch\af0\loch\f31506 ii.\tab}If using only 2 or 3 parameters, c}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15170562 onside
+r a custom grid with on the order of 10 radii per parameter. This will give you some idea of the distribution.
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid15170562 \hich\af31506\dbch\af0\loch\f31506 b.\tab}}\pard \ltrpar
 \s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid1331659 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15170562 Consider trying a single (nongrid) }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid15158197 doOptimizeLogP with different methods, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15158197\charrsid15158197 Nelder-Mead, BFGS, SLSQP}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15158197 .}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1331659 
@@ -1196,9 +1198,9 @@ onsider a custom grid with on the order of 10 radii per parameter. This will giv
 \s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid1131982 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1131982 Finally, Consider doing a gridsearch, or a multistart, with doOptimizeLogP.}{
 \rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14833849  This strategy is shown in example 00f5}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1131982 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid1131982 \hich\af31506\dbch\af0\loch\f31506 i.\tab}}\pard \ltrpar
-\s18\ql \fi-180\li2160\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl2\adjustright\rin0\lin2160\itap0\pararsid1131982 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1131982 For many science an
-d engineering problems, A multistart with doOptimzieNegLogP is likely a very good way to find the MAP and understand if there are multiple solutions. After it is found, you can do a multistart with getLogP to understand the posterior, or do some kind of m
-cmc starting from that point.
+\s18\ql \fi-180\li2160\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl2\adjustright\rin0\lin2160\itap0\pararsid1131982 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1131982 
+For many science and engineering problems, A multistart with doOptimzieNegLogP is likely a very good way to find the MAP and understand if
+ there are multiple solutions. After it is found, you can do a multistart with getLogP to understand the posterior, or do some kind of mcmc starting from that point.
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid8602385\charrsid15158197 \hich\af31506\dbch\af0\loch\f31506 d.\tab}}\pard \ltrpar
 \s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid8602385 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8602385\charrsid15158197 Tr}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8602385 
 y a single doEnsembleJumpSampling with mcmc_length = 1000 (times the number of parameter you have)
@@ -1224,8 +1226,8 @@ y a single doMetropolisHastings with mcmc_length = 1000 (times the number of par
 \s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid10621758 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid10621758 PEUQSE crashes for parameter sets where my simulation fails, what should I do?
 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid10621758\charrsid5509497 \hich\af31506\dbch\af0\loch\f31506 a.\tab}}\pard \ltrpar
-\s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid10621758 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10621758\charrsid5509497 P}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10621758 
-ut a try and except statement in your simulation wrapper.  Return a None object when your simulation fails. If your simulation wrapper returns a None object, PEUQSE will treat that parameter set as a zero probability point.}{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid10621758 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10621758\charrsid5509497 P}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10621758 ut a try and
+ except statement in your simulation wrapper.  Return a None object when your simulation fails. If your simulation wrapper returns a None object, PEUQSE will treat that parameter set as a zero probability point.}{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid10621758\charrsid5509497 
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid11354297 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1131982\charrsid15158197 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid13067814 \hich\af31506\dbch\af0\loch\f31506 4)\tab}}\pard \ltrpar
@@ -1235,9 +1237,10 @@ combined }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9516283 contour plots}{\rtl
 for my analysis?
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid13067814 \hich\af31506\dbch\af0\loch\f31506 a.\tab}}\pard \ltrpar
 \s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid13067814 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13067814 
-This probably means you are using many parameters and need to turn them on manually. They take a long time to render for many parameters (it can be more than 30 minutes), so they are turned off by default in such situations. To turn them back on, see the 
-setting}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid869771 s}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13067814  in UserInput called  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13067814\charrsid13067814 scatter_matrix_plots_settings['combined_plots']}{\rtlch\fcs1 \af0 
-\ltrch\fcs0 \insrsid869771  and }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid869771\charrsid869771 contour_plot_settings['combined_plots']}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13067814\charrsid13067814 
+This probably means you are using many parameters and need to turn them on manually. They take a long time to render for many parameters (it can be more than 30 minutes), so they are t
+urned off by default in such situations. To turn them back on, see the setting}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid869771 s}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13067814  in UserInput called  }{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid13067814\charrsid13067814 scatter_matrix_plots_settings['combined_plots']}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid869771  and }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid869771\charrsid869771 contour_plot_settings['combined_plots']}{\rtlch\fcs1 \af0 
+\ltrch\fcs0 \insrsid13067814\charrsid13067814 
 \par }\pard \ltrpar\s18\ql \li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin1440\itap0\pararsid13067814 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13067814 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid12983220 \hich\af31506\dbch\af0\loch\f31506 5)\tab}}\pard \ltrpar
 \s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid12983220 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12983220 Why are there points missing in the histograms and graphs from the sampling?
@@ -1262,16 +1265,17 @@ parameter_estimation_settings['mcmc_threshold_filter_samples']
  doEnsembleJumpSampling,}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13651419  doEnsembleSliceSampling and doMetropolisHastings?
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid13651419 \hich\af31506\dbch\af0\loch\f31506 a.\tab}}\pard \ltrpar
 \s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid13651419 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419 There is no truly general rule. It is advised to try short runs of }{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12933479 each}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419  (such as 10 minutes) and then to see the outputs of both. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12933479 In principle, the EJS method sh
-ould have more efficiency for high dimensional data that is continuous and multi-mode. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419 In principle, the ESS method should have more efficiency for high dimensional data}{\rtlch\fcs1 \af0 \ltrch\fcs0 
-\insrsid12933479  that is continuous and single mode}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419 . In principle, the MH method should work a bit better for pathological cases.  It is not possible to know for most realistic systems which one will be }{
-\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10627650 best}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419  ahead of time.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13651419\charrsid13388701 
+\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12933479 each}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419  (such as 10 minutes) and then to see the outputs of both. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12933479 
+In principle, the EJS method should have more efficiency for high dimensional data that is continuous and multi-mode. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419 In principle, the ESS method should have more efficiency for high dimensional data}{
+\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12933479  that is continuous and single mode}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419 
+. In principle, the MH method should work a bit better for pathological cases.  It is not possible to know for most realistic systems which one will be }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10627650 best}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419 
+ ahead of time.}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13651419\charrsid13388701 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid13388701 \hich\af31506\dbch\af0\loch\f31506 b.\tab}}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701 One thing to be aware of is that the }{\rtlch\fcs1 \ai\af0 
 \ltrch\fcs0 \i\insrsid13388701 time}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701  for sampling is more consistent with}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15358858  EJS and}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701  MH }{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid15358858 than}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701  ESS.  So the \'93time remaining\'94 with ESS or how long it will take is less predictable.  If you have some strict wall clock limits, you need to either use }{\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid9915174 EJS, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701 MH}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9915174 ,}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701 
- or use some very conservative estimate with ESS (such as using ESS estimated to take 20% of your real wall clock limit since it can easily take several times longer than might be estimated from initial }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8476802 
-trials}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701 ).  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13388701\charrsid6101187 
+\af0 \ltrch\fcs0 \insrsid9915174 EJS, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701 MH}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9915174 ,}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701  or use some very conservative estimate with ESS (such 
+as using ESS estimated to take 20% of your real wall clock limit since it can easily take several times longer than might be estimated from initial }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid8476802 trials}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701 ).  }{
+\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13388701\charrsid6101187 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid6101187\charrsid6101187 \hich\af31506\dbch\af0\loch\f31506 7)\tab}}\pard \ltrpar
 \s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid6101187 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid6101187\charrsid6101187 The initial distribution of samplings can be important,}{
 \rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6101187  to make sure one is not sampling too wide or too narrow of a region in the multidimensional response surface. Consider going from the default of 1.0 to 0.75.}{\rtlch\fcs1 \af0 \ltrch\fcs0 
@@ -1294,14 +1298,20 @@ trials}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13388701 ).  }{\rtlch\fcs1 \ab\af0
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6101187 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14305884 See also the powerpoint file }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14305884\charrsid14305884 ExamplesAndTutorialAndGettingStartedAppendix1}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6101187\charrsid6101187 
 
-\par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid13651419 \hich\af31506\dbch\af0\loch\f31506 8)\tab}}\pard \ltrpar
-\s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid6103039 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13651419 Saving an analysis ou}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12726409 t}{
-\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13651419 put to use later by }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12718273 dill}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13651419 :}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid6103039 
+\par }\pard \ltrpar\s18\ql \li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin720\itap0\pararsid9712574 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9712574 
+\par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid9712574 \hich\af31506\dbch\af0\loch\f31506 8)\tab}}\pard \ltrpar
+\s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid6103039 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid9712574 Accessing output results later. }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
+\b\insrsid13651419 Saving an analysis ou}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12726409 t}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13651419 put to use later by }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid12718273 dill}{\rtlch\fcs1 \ab\af0 
+\ltrch\fcs0 \b\insrsid13651419 :}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid6103039 
 \par }\pard \ltrpar\s18\ql \li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin720\itap0\pararsid6103039 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6103039 .save_PE_object(PE_object, \'93
 FileBeingSavedAs.dill\'94)
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12718273 Then, load it like this:
 \par PE_object = }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6103039 .load_PE_object(\'93FileBeingSavedAs.dill\'94)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13651419 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12001550 This is shown in example 00a}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid663104 0}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid12001550 
+\par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9712574 
+\par PEUQSE will also export some some useful quantities to pickle by default, such that one can use:
+\par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9712574\charrsid9712574 map_parameter_set, mu_AP_parameter_set, stdap_parameter_set, evidence, info_gain, post_burn_in_samples, post_burn_in_log_posteriors_un_normed_vec}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9712574 
+ =}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9712574\charrsid9712574  PEUQSE.unpickleAnObject(".\\pickles\\mcmc_post_burn_in_statistics.pkl")}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid9712574 
 \par }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid6103039 
 \par {\listtext\pard\plain\ltrpar \s17 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid13651419 \hich\af31506\dbch\af0\loch\f31506 9)\tab}}\pard\plain \ltrpar\s17\ql \fi-360\li720\ri0\sa160\sl259\slmult1
 \widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid13651419\contextualspace \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 
@@ -1321,15 +1331,15 @@ FileBeingSavedAs.dill\'94)
 \par (or using other methods from this list)
 \par }{\field\fldedit{\*\fldinst {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15683877  HYPERLINK "https://docs.scipy.org/doc/scipy/reference/optimize.html" }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid10839109 {\*\datafield 
 00d0c9ea79f9bace118c8200aa004ba90b0200000003000000e0c9ea79f9bace118c8200aa004ba90b8a000000680074007400700073003a002f002f0064006f00630073002e00730063006900700079002e006f00720067002f0064006f0063002f00730063006900700079002f007200650066006500720065006e006300
-65002f006f007000740069006d0069007a0065002e00680074006d006c000000795881f43b1d7f48af2c825dc485276300000000a5ab0003000000000000003a0000000000dc0035009c002e00303100007000004100003600000092000041ba3300000000006900006f0018000000ff0000006c002c00000000000000}}
-}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid15683877 https://docs.scipy.org/doc/scipy/reference/optimize.html}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 \ltrch\fcs0 
+65002f006f007000740069006d0069007a0065002e00680074006d006c000000795881f43b1d7f48af2c825dc485276300000000a5ab0003000000000000003a0000000000dc0035009c002e00303100007000004100003600000092000041ba3300000000006900006f0018000000ff0000006c002c000000000000000061}
+}}{\fldrslt {\rtlch\fcs1 \af0 \ltrch\fcs0 \cs21\ul\cf19\insrsid15683877 https://docs.scipy.org/doc/scipy/reference/optimize.html}}}\sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sectrsid13597278\sftnbj {\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid15683877 
 \par Example 3c does this.
 \par }\pard\plain \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid6250917 \rtlch\fcs1 \af0\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \ab\af0 
 \ltrch\fcs0 \b\insrsid15683877 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid15683877 \hich\af31506\dbch\af0\loch\f31506 10)\tab}}\pard \ltrpar
-\s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid13651419 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15683877 Use }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4945585 multi-start (astroidal
-, grid, uniform)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15683877  for pathological cases (ones which have many local minima).}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid15683877\charrsid5705294 
+\s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid13651419 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15683877 Use }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4945585 
+multi-start (astroidal, grid, uniform)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15683877  for pathological cases (ones which have many local minima).}{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid15683877\charrsid5705294 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid5705294\charrsid5705294 \hich\af31506\dbch\af0\loch\f31506 a.\tab}}\pard \ltrpar
 \s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid5705294 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5705294\charrsid5705294 
 NOTE: The below syntax will still work, but is deprecated. Gridsearches should }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5705294 now be }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5705294\charrsid5705294 conducted using the multi-start feature.
@@ -1344,8 +1354,8 @@ NOTE: The below syntax will still work, but is deprecated. Gridsearches should }
 \s18\ql \fi-180\li2160\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\ilvl2\adjustright\rin0\lin2160\itap0\pararsid5705294 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673 PE_object.doGridSearch(\lquote }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid1333673\charrsid1333673 doOptimizeSSR}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673 \rquote )}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid5705294 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid1333673 \hich\af31506\dbch\af0\loch\f31506 b.\tab}}\pard \ltrpar
-\s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\ilvl1\adjustright\rin0\lin1440\itap0\pararsid5705294 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673 
-The syntax for specifying such grids is shown in more detail for Examples 16-19 runfiles. Such as: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673\charrsid1333673     }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673 
+\s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\ilvl1\adjustright\rin0\lin1440\itap0\pararsid5705294 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673 The syntax for specifying such grids is shown in more detail for Examples 1
+6-19 runfiles. Such as: }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673\charrsid1333673     }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid1333673\charrsid1333673 \hich\af31506\dbch\af0\loch\f31506 i.\tab}}\pard \ltrpar
 \s18\ql \fi-180\li1980\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\ilvl2\adjustright\rin0\lin1980\itap0\pararsid11096928 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid1333673\charrsid1333673 
 PE_object.doGridSearch('doOptimizeNegLogP', gridSamplingAbsoluteIntervalSize=[ 0.10, 0.005, 0.50/3, 20, 20, 2, 2, 0.1, 0.1], gridSamplingNumOfIntervals=[0,0,1,1,1,1,1,0,0], passThroughArgs=\{"method":"Nelder-Mead", "maxiter":5000, "verbose":False\})}{
@@ -1354,10 +1364,9 @@ PE_object.doGridSearch('doOptimizeNegLogP', gridSamplingAbsoluteIntervalSize=[ 0
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid10511864 \hich\af31506\dbch\af0\loch\f31506 11)\tab}}\pard \ltrpar
 \s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid792178 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid10511864 Multiple responses: }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid15075605\charrsid15075605 If you have an}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605 
- array for your responses, like [1,2,3,4], this can result in less easy to interpret outputs.  You should split your responses up if they correspond to different things}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13593953 
-, so that the array becomes like [ [1], [2], [3], [4] ]}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605 . This is easy to do with  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605\charrsid15075605  UserInput.responses['responses_observed'] = }{\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605 .nestedObjectFunctions.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605\charrsid15075605  convertToNested}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605 (originalArray)
-
+ array for your responses, like [1,2,3,4], this can result in less easy to interpret outputs.  You should split your responses up if they correspond to different things}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13593953 , so that the array becom
+es like [ [1], [2], [3], [4] ]}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605 . This is easy to do with  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605\charrsid15075605  UserInput.responses['responses_observed'] = }{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid15957358 PEUQSE}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605 .nestedObjectFunctions.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605\charrsid15075605  convertToNested}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid15075605 (originalArray)
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid13593953 \hich\af31506\dbch\af0\loch\f31506 a.\tab}}\pard \ltrpar
 \s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid13593953 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13593953 You should do the same thing for your simulation outputs, }{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid3935112 in your simulation wrapper, }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid13593953 since the nesting has to match.}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3935112   }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14884622 
@@ -1372,10 +1381,10 @@ One of doing so is to do the following:}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid39
 , for timeseries,}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2890863\charrsid393687 , thinning should be used}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2890863  (not using the entire}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192  response}{\rtlch\fcs1 \af0 
 \ltrch\fcs0 \insrsid2890863  array of data)}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2890863\charrsid393687 .}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2890863   }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192 This can be done at the end of asimulation f unction}
 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2890863 . }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2890863\charrsid393687 The syntax in numpy for thinning looks like this: [start : stop : step]  where the start and stop are optional so we can omit them.}{\rtlch\fcs1 
-\af0 \ltrch\fcs0 \insrsid2890863  So for example, the user\rquote s simulation function could end with \'93return simulated_responses[::100]\'94 to reduce the number o
-f points by a factor of 100. [No example provided as of Aug 27, 2020, but a modified example 3c with higher time resolution, to show this, would be useful.]}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192    The source of this }{\rtlch\fcs1 \af0 
-\ltrch\fcs0 \insrsid7280192\charrsid393687 computational}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192\charrsid393687 intracta}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192 bility is }{\rtlch\fcs1 \af0 
-\ltrch\fcs0 \insrsid7280192\charrsid393687 due to needing to evaluate many probability distributions per sample. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid14370553\charrsid7806225 
+\af0 \ltrch\fcs0 \insrsid2890863  So for example, the user\rquote s simulation function could end with \'93return simulated_responses[::100]\'94
+ to reduce the number of points by a factor of 100. [No example provided as of Aug 27, 2020, but a modified example 3c with higher time resolution, to show this, would be useful.]}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192    The source of this }{
+\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192\charrsid393687 computational}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192  }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192\charrsid393687 intracta}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192 bility is }{
+\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192\charrsid393687 due to needing to evaluate many probability distributions per sample. }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7280192  }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid14370553\charrsid7806225 
 \par }\pard \ltrpar\s18\ql \li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin720\itap0\pararsid7806225 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid7806225\charrsid7806225 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid8671387 \hich\af31506\dbch\af0\loch\f31506 13)\tab}}\pard \ltrpar
 \s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid7806225 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid8671387 Runtime warnings}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid3689296 : }{\rtlch\fcs1 
@@ -1389,8 +1398,8 @@ f points by a factor of 100. [No example provided as of Aug 27, 2020, but a modi
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid7806225\charrsid7806225 \hich\af31506\dbch\af0\loch\f31506 b.\tab}}\pard \ltrpar
 \s18\ql \fi-360\li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\ilvl1\adjustright\rin0\lin1440\itap0\pararsid7806225 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7806225\charrsid7806225 1561: RuntimeWarning: invalid value encountered in multiply
 
-\par }\pard \ltrpar\s18\ql \li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin1440\itap0\pararsid7806225 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7806225\charrsid7806225   current_info
-_gain_KL = density0[1]*np.log(density0[1]/density0[0])}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4133112 \line }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7806225 
+\par }\pard \ltrpar\s18\ql \li1440\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin1440\itap0\pararsid7806225 {\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7806225\charrsid7806225 
+  current_info_gain_KL = density0[1]*np.log(density0[1]/density0[0])}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4133112 \line }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid7806225 
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \ab\af0\afs22 \ltrch\fcs0 \b\f31506\fs22\insrsid13177496\charrsid13177496 \hich\af31506\dbch\af0\loch\f31506 14)\tab}}\pard \ltrpar
 \s18\ql \fi-360\li720\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid4133112 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid13177496\charrsid13177496 Comparing different samplers: }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid4133112 How to compare the posterior between different samplers?
@@ -1399,8 +1408,8 @@ _gain_KL = density0[1]*np.log(density0[1]/density0[0])}{\rtlch\fcs1 \af0 \ltrch\
 \insrsid4133112\charrsid4133112 histogram_plot_settings['histograms_as_density']= False}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4133112  to make sure that the sampling is working well.
 \par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid4133112 \hich\af31506\dbch\af0\loch\f31506 b.\tab}When you are finally ready to publish a paper, it will be good to change to }{\rtlch\fcs1 \af0 \ltrch\fcs0 
 \insrsid4133112\charrsid4133112 histogram_plot_settings['histograms_as_density']= }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid4133112 True  so that all the posterior distributions are on a common scale.
-\par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid4133112 \hich\af31506\dbch\af0\loch\f31506 c.\tab}For many problems, ESS will produ
-ce the smoothest posterior distribution. For rough posteriors, MH might explore better in some cases.  Uniform and Random sampling tend to produce the sparsest sampling of the posterior distribution in most cases.
+\par {\listtext\pard\plain\ltrpar \s18 \rtlch\fcs1 \af0\afs22 \ltrch\fcs0 \f31506\fs22\insrsid4133112 \hich\af31506\dbch\af0\loch\f31506 c.\tab}For many problems, ESS }{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid14377513 and EJS }{\rtlch\fcs1 \af0 \ltrch\fcs0 
+\insrsid4133112 will produce the smoothest posterior distribution. For rough posteriors, MH might explore better in some cases.  Uniform and Random sampling tend to produce the sparsest sampling of the posterior distribution in most cases.
 \par }\pard \ltrpar\s18\ql \li0\ri0\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid6250917 {\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid4808518 
 \par 
 \par }{\rtlch\fcs1 \ab\af0 \ltrch\fcs0 \b\insrsid2493548 Model Selection / Model Discrimination / Model Comparison:}{\rtlch\fcs1 \af0 \ltrch\fcs0 \insrsid2493548  There is no example right now. Contact the creators.}{\rtlch\fcs1 \af0 \ltrch\fcs0 
@@ -1548,10 +1557,10 @@ fffffffffffffffffdffffff04000000feffffff05000000fefffffffeffffffffffffffffffffff
 ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
 ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
 ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
-ffffffffffffffffffffffffffffffff52006f006f007400200045006e00740072007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016000500ffffffffffffffff010000000c6ad98892f1d411a65f0040963251e50000000000000000000000005049
-70affbacd8010300000080020000000000004d0073006f004400610074006100530074006f0072006500000000000000000000000000000000000000000000000000000000000000000000000000000000001a000101ffffffffffffffff020000000000000000000000000000000000000000000000504970affbacd801
-504970affbacd801000000000000000000000000d00055005400d400d800470051004c0058004500ca00c100cc00df00cc00d7005400d3004200c2004c0041003d003d000000000000000000000000000000000032000101ffffffffffffffff030000000000000000000000000000000000000000000000504970affbac
-d801504970affbacd8010000000000000000000000004900740065006d0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000a000201ffffffff04000000ffffffff000000000000000000000000000000000000000000000000
+ffffffffffffffffffffffffffffffff52006f006f007400200045006e00740072007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016000500ffffffffffffffff010000000c6ad98892f1d411a65f0040963251e5000000000000000000000000a0d6
+526bbb34d9010300000080020000000000004d0073006f004400610074006100530074006f0072006500000000000000000000000000000000000000000000000000000000000000000000000000000000001a000101ffffffffffffffff020000000000000000000000000000000000000000000000a0d6526bbb34d901
+a0d6526bbb34d901000000000000000000000000d00055005400d400d800470051004c0058004500ca00c100cc00df00cc00d7005400d3004200c2004c0041003d003d000000000000000000000000000000000032000101ffffffffffffffff030000000000000000000000000000000000000000000000a0d6526bbb34
+d901a0d6526bbb34d9010000000000000000000000004900740065006d0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000a000201ffffffff04000000ffffffff000000000000000000000000000000000000000000000000
 00000000000000000000000000000000f100000000000000010000000200000003000000feffffff0500000006000000070000000800000009000000feffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
 ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
 ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
diff --git a/PEUQSE/InverseProblem.py b/PEUQSE/InverseProblem.py
index d017a006..d8e7ce88 100644
--- a/PEUQSE/InverseProblem.py
+++ b/PEUQSE/InverseProblem.py
@@ -1990,6 +1990,7 @@ def exportPostBurnInStatistics(self):
             np.savetxt(self.UserInput.directories['logs_and_csvs']+directory_name_suffix+file_name_prefix+'mcmc_burn_in_logP_and_parameter_samples'+file_name_suffix+'.csv',np.hstack((self.during_burn_in_log_posteriors_un_normed_vec, self.during_burn_in_samples)), delimiter=",")
         pickleAnObject(postBurnInStatistics,self.UserInput.directories['pickles']+directory_name_suffix+file_name_prefix+'mcmc_post_burn_in_statistics'+file_name_suffix)
         pickleAnObject(self.map_logP,self.UserInput.directories['pickles']+directory_name_suffix+file_name_prefix+'mcmc_map_logP'+file_name_suffix)
+        pickleAnObject(self.map_parameter_set,self.UserInput.directories['pickles']+directory_name_suffix+file_name_prefix+'mcmc_map_parameter_set'+file_name_suffix)
         if self.UserInput.parameter_estimation_settings['mcmc_continueSampling'] == True:
             pickleAnObject(self.UserInput.InputParameterInitialGuess,self.UserInput.directories['pickles']+directory_name_suffix+file_name_prefix+'mcmc_continued_initial_point_parameters'+file_name_suffix)
         else:
@@ -2097,19 +2098,25 @@ def exportResponses(self, choiceOrResponsesData='', filenameString = '', consoli
             else:
                 consolidated = False
         if consolidated == True:
-            headerString = 'ResponseAbscissa,' #initialize a string that will be added to.
-            for responseIndex in range(len(responsesData)): #Create a header for each column.
-                if responseIndex < len(responsesData) - 1: #we add a comma after the column heading if it is not the last response index.
-                    headerString = headerString + "Response" + str(responseIndex) + ","
-                else: #for last heading:
-                    headerString = headerString + "Response" + str(responseIndex)
-            responsesDataWithAbscissa = np.vstack((self.UserInput.responses_abscissa, responsesData))
-            np.savetxt(self.UserInput.directories['logs_and_csvs']+ "ExportedResponsesData__" + filenameString + choice + "__ResponsesConsolidated" + ".csv", responsesDataWithAbscissa.transpose(), delimiter=",", encoding =None,header=headerString, comments='')
+            if type(responsesData) == type(None):
+                print("No responsess data obtained, skipping exporting.")
+            else:    
+                headerString = 'ResponseAbscissa,' #initialize a string that will be added to.
+                for responseIndex in range(len(responsesData)): #Create a header for each column.
+                    if responseIndex < len(responsesData) - 1: #we add a comma after the column heading if it is not the last response index.
+                        headerString = headerString + "Response" + str(responseIndex) + ","
+                    else: #for last heading:
+                        headerString = headerString + "Response" + str(responseIndex)
+                responsesDataWithAbscissa = np.vstack((self.UserInput.responses_abscissa, responsesData))
+                np.savetxt(self.UserInput.directories['logs_and_csvs']+ "ExportedResponsesData__" + filenameString + choice + "__ResponsesConsolidated" + ".csv", responsesDataWithAbscissa.transpose(), delimiter=",", encoding =None,header=headerString, comments='')
         else:
             for responseIndex,responseData in enumerate(responsesData):
-                headerString = 'ResponseAbscissa,' + "Response" + str(responseIndex)
-                responseDataWithAbscissa = np.vstack((self.UserInput.responses_abscissa[responseIndex],responseData))
-                np.savetxt(self.UserInput.directories['logs_and_csvs']+ "ExportedResponsesData__" + filenameString + choice + "__Response" + str(responseIndex)  + ".csv", responseDataWithAbscissa.transpose(), delimiter=",", encoding =None, header=headerString, comments='')
+                if type(responseData) == type(None):
+                    print("No responsess data obtained for response", responseIndex, ", skipping exporting.")
+                else:
+                    headerString = 'ResponseAbscissa,' + "Response" + str(responseIndex)
+                    responseDataWithAbscissa = np.vstack((self.UserInput.responses_abscissa[responseIndex],responseData))
+                    np.savetxt(self.UserInput.directories['logs_and_csvs']+ "ExportedResponsesData__" + filenameString + choice + "__Response" + str(responseIndex)  + ".csv", responseDataWithAbscissa.transpose(), delimiter=",", encoding =None, header=headerString, comments='')
         
     def getConvergenceDiagnostics(self, discrete_chains_post_burn_in_samples=[], showFigure = None):
         """
@@ -2817,10 +2824,12 @@ def getSimulatedResponses(self, discreteParameterVector):
         simulationOutputProcessingFunction = self.UserInput.simulationOutputProcessingFunction #Do NOT use self.UserInput.model['simulationOutputProcessingFunction'] because that won't work with reduced parameter space requests.
         simulationOutput =simulationFunction(discreteParameterVector) 
         if type(simulationOutput)==type(None):
+            self.lastSimulatedResponses = None
             return None #This is intended for the case that the simulation fails. User can return "None" for the simulation output.
         try:#This warning will not always work if there are multiple responses. #TODO: make this a loop across the number of responses. For now, just making it a "try" and "except" statement.
             if np.array(simulationOutput).any()==float('nan'):
                 print("WARNING: Your simulation output returned a 'nan' for parameter values " +str(discreteParameterVector) + ". 'nan' values cannot be processed by the PEUQSE software and this set of Parameter Values is being assigned a probability of 0.")
+                self.lastSimulatedResponses = None
                 return None #This is intended for the case that the simulation fails in some way without returning "None". 
         except:
             pass
diff --git a/setup.py b/setup.py
index edf1db31..c7350c53 100644
--- a/setup.py
+++ b/setup.py
@@ -22,7 +22,7 @@
 AUTHOR = 'Aditya Savara'
 REQUIRES_PYTHON = '>=3.5.0'
 
-VERSION = '1.2.5'
+VERSION = '1.2.6'
 
 LICENSE = 'BSD-3-Clause'
 


Test patch:
diff --git a/Examples/Example13doeFunctionExample/test_1.py b/Examples/Example13doeFunctionExample/test_1.py
index cd445ed7..0e79b650 100644
--- a/Examples/Example13doeFunctionExample/test_1.py
+++ b/Examples/Example13doeFunctionExample/test_1.py
@@ -28,9 +28,9 @@
 
 
 """
-#This file is an example/template for when we ***don't have an analytical result*** but we know our function is working.
-#We know the function is working during template distribution because we are just using the test 12 example.
+#This file is an example/template for when we ***don't have an analytical result*** but we know our function is working. 
 In this template, we ***will not*** use the "set_expected_result" command. So we are commenting out the below lines, and will go directly to using the function to create an actual output.
+#The expected result was thus set the first time this file was run.
 """
 # # # #input for the unit that will be tested
 # # # input = 4
diff --git a/Examples/Example13doeFunctionExample/test_2.py b/Examples/Example13doeFunctionExample/test_2.py
index df907dc2..ef3071a2 100644
--- a/Examples/Example13doeFunctionExample/test_2.py
+++ b/Examples/Example13doeFunctionExample/test_2.py
@@ -28,9 +28,9 @@
 
 
 """
-#This file is an example/template for when we ***don't have an analytical result*** but we know our function is working.
-#We know the function is working during template distribution because we are just using the test 12 example.
+#This file is an example/template for when we ***don't have an analytical result*** but we know our function is working. 
 In this template, we ***will not*** use the "set_expected_result" command. So we are commenting out the below lines, and will go directly to using the function to create an actual output.
+#The expected result was thus set the first time this file was run.
 """
 # # # #input for the unit that will be tested
 # # # input = 4
diff --git a/Examples/Example13doeFunctionExample/test_3.py b/Examples/Example13doeFunctionExample/test_3.py
index 052e0e22..acc2a55d 100644
--- a/Examples/Example13doeFunctionExample/test_3.py
+++ b/Examples/Example13doeFunctionExample/test_3.py
@@ -28,9 +28,7 @@
 
 
 """
-#This file is an example/template for when we ***don't have an analytical result*** but we know our function is working.
-#We know the function is working during template distribution because we are just using the test 12 example.
-In this template, we ***will not*** use the "set_expected_result" command. So we are commenting out the below lines, and will go directly to using the function to create an actual output.
+In this template, we ***will *** use the "set_expected_result" command to compare to a control result.
 """
 import sys; sys.path.insert(0, '../../');  import PEUQSE as PEUQSE
 import PEUQSE
diff --git a/Examples/Example13doeFunctionExample/test_4.py b/Examples/Example13doeFunctionExample/test_4.py
index d6807891..a14aa370 100644
--- a/Examples/Example13doeFunctionExample/test_4.py
+++ b/Examples/Example13doeFunctionExample/test_4.py
@@ -28,9 +28,7 @@
 
 
 """
-#This file is an example/template for when we ***don't have an analytical result*** but we know our function is working.
-#We know the function is working during template distribution because we are just using the test 12 example.
-In this template, we ***will not*** use the "set_expected_result" command. So we are commenting out the below lines, and will go directly to using the function to create an actual output.
+In this template, we ***will *** use the "set_expected_result" command to compare to a control result.
 """
 import sys; sys.path.insert(0, '../../');  import PEUQSE as PEUQSE
 import PEUQSE