Repository: omnivector-solutions/jobbergate (language: python)

Issue:
Tucker/job 86  add auth0 token support to jobbergate cli
#### Update Summary
    This change allows a user to authenticate requests against the
    jobbergate-api using a token retrieved from the Armada frontend.

    The token is added by using the --token option.

    Also:
    * Updated docker-compose with network for bridged communication (to Auth0)
    * Moved lifecycle events in jobbergate-api to main app
    * Converted jobbergate-cli to use Pydantic for settings
    * Moved constants to a constants module
    * Removed unused config/*.json files
    * Converted broken urljoin in api wrapper to use yarl instead
    * Captured stack traces for errors in jobbergate-cli logs
    * Allowed CLI to be invoked without subcommand (for just binding token)
    * Updated unit tests
    * Updated dependencies

`Task`: https://app.clickup.com/t/18022949/JOB-86

---

#### Peer Review
Please follow the upstream omnivector documentation concerning
[peer-review guidelines](https://github.com/omnivector-solutions/Documentation/blob/main/Contributing/pr_review_standards.md#peer-review).



Discussion / hints:

Fix patch:
diff --git a/jobbergate-api/jobbergateapi2/apps/applications/models.py b/jobbergate-api/jobbergateapi2/apps/applications/models.py
index 10ece883..955f0878 100644
--- a/jobbergate-api/jobbergateapi2/apps/applications/models.py
+++ b/jobbergate-api/jobbergateapi2/apps/applications/models.py
@@ -13,6 +13,7 @@
     "applications",
     metadata,
     Column("id", Integer, primary_key=True),
+    Column("identifier", String, unique=True, index=True),
     Column("application_name", String, nullable=False, index=True),
     Column("application_description", String, default=""),
     Column("application_owner_id", String, nullable=False, index=True),
diff --git a/jobbergate-api/jobbergateapi2/apps/applications/routers.py b/jobbergate-api/jobbergateapi2/apps/applications/routers.py
index b3ae4cec..959a2ec2 100644
--- a/jobbergate-api/jobbergateapi2/apps/applications/routers.py
+++ b/jobbergate-api/jobbergateapi2/apps/applications/routers.py
@@ -3,15 +3,16 @@
 """
 
 from datetime import datetime
-from typing import Any, Dict, List, Optional
+from typing import Any, Dict, Optional
 
 from armasec import TokenPayload
 from fastapi import APIRouter, Depends, File, Form, HTTPException, Query, UploadFile, status
+from sqlalchemy import not_
 
 from jobbergateapi2.apps.applications.models import applications_table
 from jobbergateapi2.apps.applications.schemas import Application, ApplicationRequest
 from jobbergateapi2.compat import INTEGRITY_CHECK_EXCEPTIONS
-from jobbergateapi2.pagination import Pagination
+from jobbergateapi2.pagination import Pagination, Response, package_response
 from jobbergateapi2.s3_manager import S3Manager
 from jobbergateapi2.security import guard
 from jobbergateapi2.storage import database
@@ -81,10 +82,11 @@ async def application_delete(
 
 
 @router.get(
-    "/applications/", description="Endpoint to list applications", response_model=List[Application],
+    "/applications/", description="Endpoint to list applications", response_model=Response[Application],
 )
 async def applications_list(
-    p: Pagination = Depends(),
+    pagination: Pagination = Depends(),
+    user: Optional[bool] = Query(None),
     all: Optional[bool] = Query(None),
     token_payload: TokenPayload = Depends(guard.lockdown("jobbergate:applications:read")),
 ):
@@ -92,12 +94,11 @@ async def applications_list(
     List all applications
     """
     query = applications_table.select()
-    if not all:
+    if user:
         query = query.where(applications_table.c.application_owner_id == token_payload.sub)
-    query = query.limit(p.limit).offset(p.skip)
-    raw_applications = await database.fetch_all(query)
-    applications = [Application.parse_obj(x) for x in raw_applications]
-    return applications
+    if all is None:
+        query = query.where(not_(applications_table.c.identifier.is_(None)))
+    return await package_response(Application, query, pagination)
 
 
 @router.get(
diff --git a/jobbergate-api/jobbergateapi2/apps/applications/schemas.py b/jobbergate-api/jobbergateapi2/apps/applications/schemas.py
index 3e03f2d5..f8511358 100644
--- a/jobbergate-api/jobbergateapi2/apps/applications/schemas.py
+++ b/jobbergate-api/jobbergateapi2/apps/applications/schemas.py
@@ -12,6 +12,7 @@ class ApplicationRequest(BaseModel):
     Request model for the Application resource.
     """
 
+    identifier: str = Field(None, description="A label used for frequently accessed applications")
     application_name: str = Field(...)
     application_description: Optional[str] = Field("")
     application_owner_id: str = Field(None, description="The owner id of the application")
diff --git a/jobbergate-api/jobbergateapi2/apps/job_scripts/routers.py b/jobbergate-api/jobbergateapi2/apps/job_scripts/routers.py
index 133b8686..c16fcdca 100644
--- a/jobbergate-api/jobbergateapi2/apps/job_scripts/routers.py
+++ b/jobbergate-api/jobbergateapi2/apps/job_scripts/routers.py
@@ -18,7 +18,7 @@
 from jobbergateapi2.apps.job_scripts.models import job_scripts_table
 from jobbergateapi2.apps.job_scripts.schemas import JobScript, JobScriptRequest
 from jobbergateapi2.compat import INTEGRITY_CHECK_EXCEPTIONS
-from jobbergateapi2.pagination import Pagination
+from jobbergateapi2.pagination import Pagination, Response, package_response
 from jobbergateapi2.s3_manager import S3Manager
 from jobbergateapi2.security import guard
 from jobbergateapi2.storage import database
@@ -198,9 +198,9 @@ async def job_script_get(job_script_id: int = Query(...)):
     return job_script
 
 
-@router.get("/job-scripts/", description="Endpoint to list job_scripts", response_model=List[JobScript])
+@router.get("/job-scripts/", description="Endpoint to list job_scripts", response_model=Response[JobScript])
 async def job_script_list(
-    p: Pagination = Depends(),
+    pagination: Pagination = Depends(),
     all: Optional[bool] = Query(None),
     token_payload: TokenPayload = Depends(guard.lockdown("jobbergate:job-scripts:read")),
 ):
@@ -210,11 +210,7 @@ async def job_script_list(
     query = job_scripts_table.select()
     if not all:
         query = query.where(job_scripts_table.c.job_script_owner_id == token_payload.sub)
-    query = query.limit(p.limit).offset(p.skip)
-    raw_job_scripts = await database.fetch_all(query)
-    job_scripts = [JobScript.parse_obj(x) for x in raw_job_scripts]
-
-    return job_scripts
+    return await package_response(JobScript, query, pagination)
 
 
 @router.delete(
diff --git a/jobbergate-api/jobbergateapi2/apps/job_submissions/routers.py b/jobbergate-api/jobbergateapi2/apps/job_submissions/routers.py
index e126dcdb..4eadef64 100644
--- a/jobbergate-api/jobbergateapi2/apps/job_submissions/routers.py
+++ b/jobbergate-api/jobbergateapi2/apps/job_submissions/routers.py
@@ -2,7 +2,7 @@
 Router for the JobSubmission resource.
 """
 from datetime import datetime
-from typing import List, Optional
+from typing import Optional
 
 from armasec import TokenPayload
 from fastapi import APIRouter, Depends, Form, HTTPException, Query, status
@@ -11,7 +11,7 @@
 from jobbergateapi2.apps.job_submissions.models import job_submissions_table
 from jobbergateapi2.apps.job_submissions.schemas import JobSubmission, JobSubmissionRequest
 from jobbergateapi2.compat import INTEGRITY_CHECK_EXCEPTIONS
-from jobbergateapi2.pagination import Pagination
+from jobbergateapi2.pagination import Pagination, Response, package_response
 from jobbergateapi2.security import guard
 from jobbergateapi2.storage import database
 
@@ -71,10 +71,12 @@ async def job_submission_get(job_submission_id: int = Query(...)):
 
 
 @router.get(
-    "/job-submissions/", description="Endpoint to list job_submissions", response_model=List[JobSubmission]
+    "/job-submissions/",
+    description="Endpoint to list job_submissions",
+    response_model=Response[JobSubmission],
 )
 async def job_submission_list(
-    p: Pagination = Depends(),
+    pagination: Pagination = Depends(),
     all: Optional[bool] = Query(None),
     token_payload: TokenPayload = Depends(guard.lockdown("jobbergate:job-submissions:read")),
 ):
@@ -84,11 +86,7 @@ async def job_submission_list(
     query = job_submissions_table.select()
     if not all:
         query = query.where(job_submissions_table.c.job_submission_owner_id == token_payload.sub)
-    query = query.limit(p.limit).offset(p.skip)
-    raw_job_submissions = await database.fetch_all(query)
-    job_submissions = [JobSubmission.parse_obj(x) for x in raw_job_submissions]
-
-    return job_submissions
+    return await package_response(JobSubmission, query, pagination)
 
 
 @router.delete(
diff --git a/jobbergate-api/jobbergateapi2/main.py b/jobbergate-api/jobbergateapi2/main.py
index 250e46e4..105d31c1 100644
--- a/jobbergate-api/jobbergateapi2/main.py
+++ b/jobbergate-api/jobbergateapi2/main.py
@@ -36,6 +36,7 @@ async def health_check():
 app = FastAPI()
 app.mount("/jobbergate", subapp)
 
+
 @app.on_event("startup")
 async def init_database():
     """
diff --git a/jobbergate-api/jobbergateapi2/pagination.py b/jobbergate-api/jobbergateapi2/pagination.py
index 48bd67a3..b416642e 100644
--- a/jobbergate-api/jobbergateapi2/pagination.py
+++ b/jobbergate-api/jobbergateapi2/pagination.py
@@ -2,18 +2,89 @@
 Pagination feature for all endpoints.
 """
 
+from typing import Generic, List, Optional, TypeVar
 
-class Pagination:
+from pydantic import BaseModel, Field
+from pydantic.generics import GenericModel
+from sqlalchemy import func, select
+
+from jobbergateapi2.storage import database
+
+
+class Pagination(BaseModel):
     """
     Basic pagination class.
     """
 
-    def __init__(self, limit: int = 10, skip: int = 0):
+    page: Optional[int] = Field(
+        None,
+        ge=0,
+        description="""
+            The page offset for items.
+            The index for the first item is computed as index == page * per_page.
+            Must be greater than or equal to 0.
+        """,
+    )
+    per_page: int = Field(
+        10, gt=0, description="Number of items to include per page. Must be greater than 0",
+    )
+
+    def dict(self):
         """
-        Pagination constructor using default limit and skip offset.
+        Overrides default ``dict()`` behavior so that if ``page`` is None, all fields are omitted.
         """
-        self.limit = limit
-        self.skip = skip
+        return dict() if self.page is None else super().dict()
+
+
+class ResponseMetadata(BaseModel):
+    """
+    A metadata model that describes pagination info.
+    """
+
+    total: int
+    page: Optional[int]
+    per_page: Optional[int]
+
+
+DataT = TypeVar("DataT")
+
 
-    def __str__(self):
-        return f"limit: {self.limit}, skip: {self.skip}"
+class Response(GenericModel, Generic[DataT]):
+    """
+    An envelope for responses including the metadata for pagination.
+
+    This is a generic response envelope that can be used for any of list of pydantic models.
+    """
+
+    results: List[DataT]
+    metadata: ResponseMetadata
+
+
+async def package_response(model, query, pagination: Pagination) -> Response:
+    """
+    Packages the response in an envelope that includes the response and the metadata.
+
+    Structure of response is::
+
+        {
+            "results": [result0, result1, ...resultN],
+            "metadata": {
+                "total": N,
+                "page": i,
+                "per_page", n,
+            },
+        }
+
+    If pagination.page is None, no pagination is performed
+    """
+    # The explicit order_by removes any sorting added to the query for the total computation
+    # total = await database.fetch_val(query.with_only_columns([func.count()]).order_by(None))
+    count_query = select(func.count()).select_from(query.subquery())
+    total = await database.fetch_val(query=count_query)
+    if pagination.page is not None:
+        query = query.limit(pagination.per_page).offset(pagination.page * pagination.per_page)
+    raw_response = await database.fetch_all(query)
+    return Response(
+        results=[model.parse_obj(x) for x in raw_response],
+        metadata=ResponseMetadata(total=total, **pagination.dict()),
+    )
diff --git a/jobbergate-api/poetry.lock b/jobbergate-api/poetry.lock
index 7f5c5598..fb6e8b11 100644
--- a/jobbergate-api/poetry.lock
+++ b/jobbergate-api/poetry.lock
@@ -11,7 +11,7 @@ typing_extensions = ">=3.7.2"
 
 [[package]]
 name = "anyio"
-version = "3.3.4"
+version = "3.4.0"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 category = "main"
 optional = false
@@ -23,7 +23,7 @@ sniffio = ">=1.1"
 
 [package.extras]
 doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"]
-test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"]
+test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "contextlib2", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"]
 trio = ["trio (>=0.16)"]
 
 [[package]]
@@ -167,14 +167,14 @@ d = ["aiohttp (>=3.3.2)", "aiohttp-cors"]
 
 [[package]]
 name = "boto3"
-version = "1.20.7"
+version = "1.20.11"
 description = "The AWS SDK for Python"
 category = "main"
 optional = false
 python-versions = ">= 3.6"
 
 [package.dependencies]
-botocore = ">=1.23.7,<1.24.0"
+botocore = ">=1.23.11,<1.24.0"
 jmespath = ">=0.7.1,<1.0.0"
 s3transfer = ">=0.5.0,<0.6.0"
 
@@ -183,7 +183,7 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
 
 [[package]]
 name = "botocore"
-version = "1.23.7"
+version = "1.23.11"
 description = "Low-level, data-driven core of boto 3."
 category = "main"
 optional = false
@@ -294,7 +294,7 @@ toml = ["toml"]
 
 [[package]]
 name = "cryptography"
-version = "35.0.0"
+version = "36.0.0"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 category = "main"
 optional = false
@@ -305,7 +305,7 @@ cffi = ">=1.12"
 
 [package.extras]
 docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"]
-docstest = ["doc8", "pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"]
+docstest = ["pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"]
 pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"]
 sdist = ["setuptools_rust (>=0.11.4)"]
 ssh = ["bcrypt (>=3.1.5)"]
@@ -313,7 +313,7 @@ test = ["pytest (>=6.2.0)", "pytest-cov", "pytest-subtests", "pytest-xdist", "pr
 
 [[package]]
 name = "databases"
-version = "0.4.3"
+version = "0.5.3"
 description = "Async database support for Python."
 category = "main"
 optional = false
@@ -321,7 +321,7 @@ python-versions = ">=3.6"
 
 [package.dependencies]
 aiosqlite = {version = "*", optional = true, markers = "extra == \"sqlite\""}
-sqlalchemy = "<1.4"
+sqlalchemy = ">=1.4,<1.5"
 
 [package.extras]
 mysql = ["aiomysql"]
@@ -455,6 +455,17 @@ python-versions = ">=3.5"
 [package.dependencies]
 python-dateutil = ">=2.7"
 
+[[package]]
+name = "greenlet"
+version = "1.1.2"
+description = "Lightweight in-process concurrent programming"
+category = "main"
+optional = false
+python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
+
+[package.extras]
+docs = ["sphinx"]
+
 [[package]]
 name = "h11"
 version = "0.12.0"
@@ -499,14 +510,14 @@ http2 = ["h2 (>=3.0.0,<4.0.0)"]
 
 [[package]]
 name = "identify"
-version = "2.3.6"
+version = "2.4.0"
 description = "File identification library for Python"
 category = "dev"
 optional = false
 python-versions = ">=3.6.1"
 
 [package.extras]
-license = ["editdistance-s"]
+license = ["ukkonen"]
 
 [[package]]
 name = "idna"
@@ -711,14 +722,14 @@ python-versions = "*"
 
 [[package]]
 name = "packaging"
-version = "21.2"
+version = "21.3"
 description = "Core utilities for Python packages"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.dependencies]
-pyparsing = ">=2.0.2,<3"
+pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
 [[package]]
 name = "parso"
@@ -973,11 +984,14 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "pyparsing"
-version = "2.4.7"
+version = "3.0.6"
 description = "Python parsing module"
 category = "main"
 optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+python-versions = ">=3.6"
+
+[package.extras]
+diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pytest"
@@ -1256,23 +1270,35 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "sqlalchemy"
-version = "1.3.24"
+version = "1.4.27"
 description = "Database Abstraction Library"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+
+[package.dependencies]
+greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
 
 [package.extras]
+aiomysql = ["greenlet (!=0.4.17)", "aiomysql"]
+aiosqlite = ["typing_extensions (!=3.10.0.1)", "greenlet (!=0.4.17)", "aiosqlite"]
+asyncio = ["greenlet (!=0.4.17)"]
+asyncmy = ["greenlet (!=0.4.17)", "asyncmy (>=0.2.3)"]
+mariadb_connector = ["mariadb (>=1.0.1)"]
 mssql = ["pyodbc"]
 mssql_pymssql = ["pymssql"]
 mssql_pyodbc = ["pyodbc"]
-mysql = ["mysqlclient"]
-oracle = ["cx-oracle"]
-postgresql = ["psycopg2"]
-postgresql_pg8000 = ["pg8000 (<1.16.6)"]
+mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"]
+mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"]
+mysql_connector = ["mysql-connector-python"]
+oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"]
+postgresql = ["psycopg2 (>=2.7)"]
+postgresql_asyncpg = ["greenlet (!=0.4.17)", "asyncpg"]
+postgresql_pg8000 = ["pg8000 (>=1.16.6)"]
 postgresql_psycopg2binary = ["psycopg2-binary"]
 postgresql_psycopg2cffi = ["psycopg2cffi"]
 pymysql = ["pymysql (<1)", "pymysql"]
+sqlcipher = ["sqlcipher3-binary"]
 
 [[package]]
 name = "sqlalchemy-stubs"
@@ -1432,7 +1458,7 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.8"
-content-hash = "7fc756a358530421513964f5da4110f44c6c4e30d325d877a29190459fc5ec33"
+content-hash = "e228a70dcc1ca88b7006d6bb8900848b0af51e62ceeaaee1c4d592a3eaa1709e"
 
 [metadata.files]
 aiosqlite = [
@@ -1440,8 +1466,8 @@ aiosqlite = [
     {file = "aiosqlite-0.17.0.tar.gz", hash = "sha256:f0e6acc24bc4864149267ac82fb46dfb3be4455f99fe21df82609cc6e6baee51"},
 ]
 anyio = [
-    {file = "anyio-3.3.4-py3-none-any.whl", hash = "sha256:4fd09a25ab7fa01d34512b7249e366cd10358cdafc95022c7ff8c8f8a5026d66"},
-    {file = "anyio-3.3.4.tar.gz", hash = "sha256:67da67b5b21f96b9d3d65daa6ea99f5d5282cb09f50eb4456f8fb51dffefc3ff"},
+    {file = "anyio-3.4.0-py3-none-any.whl", hash = "sha256:2855a9423524abcdd652d942f8932fda1735210f77a6b392eafd9ff34d3fe020"},
+    {file = "anyio-3.4.0.tar.gz", hash = "sha256:24adc69309fb5779bc1e06158e143e0b6d2c56b302a3ac3de3083c705a6ed39d"},
 ]
 appdirs = [
     {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"},
@@ -1505,12 +1531,12 @@ black = [
     {file = "black-19.10b0.tar.gz", hash = "sha256:c2edb73a08e9e0e6f65a0e6af18b059b8b1cdd5bef997d7a0b181df93dc81539"},
 ]
 boto3 = [
-    {file = "boto3-1.20.7-py3-none-any.whl", hash = "sha256:d3750ebf56b25ec54f0bbb10c1fa73c973770fba28e9bc04ba13f59d4a025812"},
-    {file = "boto3-1.20.7.tar.gz", hash = "sha256:cd386635d01c3474c6a2c028af4b7d36d9a45d29bfc1f7766189daefe3bbf533"},
+    {file = "boto3-1.20.11-py3-none-any.whl", hash = "sha256:cd58563dd3f36d5909815752b12c80a2c510c051474f8296e28dbd3ef5634d65"},
+    {file = "boto3-1.20.11.tar.gz", hash = "sha256:035191ad6c7e8aed972e1374f4e0ecb38767c497fd6c961e4ae33898b62f78fb"},
 ]
 botocore = [
-    {file = "botocore-1.23.7-py3-none-any.whl", hash = "sha256:39f9880eee40e170f8098a7cabe6de8689faa2f0313a03972f7a7c0ccc8b0e84"},
-    {file = "botocore-1.23.7.tar.gz", hash = "sha256:50c3bd89849f257915f2d161e056ce55ff318712077565113c435547bfea4073"},
+    {file = "botocore-1.23.11-py3-none-any.whl", hash = "sha256:133fa0837762587fb4e5da3fb61ac0b45495cd9fd2d2be7679ba64899da1f3ba"},
+    {file = "botocore-1.23.11.tar.gz", hash = "sha256:497234f137810909289a600433cec5583ea8dc05a78b644653d76484138d78b9"},
 ]
 certifi = [
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+    {file = "SQLAlchemy-1.4.27-cp39-cp39-win_amd64.whl", hash = "sha256:8dbe5f639e6d035778ebf700be6d573f82a13662c3c2c3aa0f1dba303b942806"},
+    {file = "SQLAlchemy-1.4.27.tar.gz", hash = "sha256:d768359daeb3a86644f3854c6659e4496a3e6bba2b4651ecc87ce7ad415b320c"},
 ]
 sqlalchemy-stubs = [
     {file = "sqlalchemy-stubs-0.4.tar.gz", hash = "sha256:c665d6dd4482ef642f01027fa06c3d5e91befabb219dc71fc2a09e7d7695f7ae"},
diff --git a/jobbergate-api/pyproject.toml b/jobbergate-api/pyproject.toml
index 97fac469..1f18ab6e 100644
--- a/jobbergate-api/pyproject.toml
+++ b/jobbergate-api/pyproject.toml
@@ -16,7 +16,7 @@ passlib = "^1.7.2"
 python-multipart = "^0.0.5"
 python-dotenv = "^0.16.0"
 mangum = "^0.11.0"
-databases = {extras = ["sqlite"], version = "^0.4.3"}
+databases = {extras = ["sqlite"], version = "^0.5.3"}
 boto3 = "^1.17.51"
 Jinja2 = "^2.11.3"
 asyncpg = "^0.22.0"
diff --git a/jobbergate-cli/jobbergate_cli/jobbergate_api_wrapper.py b/jobbergate-cli/jobbergate_cli/jobbergate_api_wrapper.py
index 8297c0b4..cd779a34 100644
--- a/jobbergate-cli/jobbergate_cli/jobbergate_api_wrapper.py
+++ b/jobbergate-cli/jobbergate_cli/jobbergate_api_wrapper.py
@@ -89,7 +89,7 @@ def tardir(self, path, tar_name, tar_list):
                         archive.add(os.path.join(root, file), arcname=file)
         archive.close()
 
-    def jobbergate_request(self, method, endpoint, data=None, files=None):
+    def jobbergate_request(self, method, endpoint, data=None, files=None, params=None):
         """
         Submit HTTP requests.
 
@@ -98,12 +98,13 @@ def jobbergate_request(self, method, endpoint, data=None, files=None):
             endpoint  -- API End point: application, job-script, job-submission
             data      -- data to be submitted on POST/PUT requests
             files     -- file(s) to be sent with request where applicable
-
+            params    -- Query parameters for GET requests
         """
         if method == "GET":
             try:
                 response = client.get(
                     endpoint,
+                    params=params,
                     headers={"Authorization": "Bearer " + self.token},
                     verify=False,
                 )
@@ -415,18 +416,18 @@ def list_job_scripts(self, all):
                     if NOT specified then only the user's job scripts
                     will be returned
         """
-        response = self.jobbergate_request(method="GET", endpoint=self.api_endpoint / "job-scripts")
+        params = dict(all=True) if all else None
+        envelope = self.jobbergate_request(
+            method="GET",
+            endpoint=self.api_endpoint / "job-scripts",
+            params=params,
+        )
+        results = envelope["results"]
 
         try:
-            response = [{k: v for k, v in d.items() if k not in self.job_script_suppress} for d in response]
-        except:  # noqa: E722
-            return response
-
-        if all:
-            return response
-        else:
-            response = [d for d in response if d["job_script_owner"] == self.user_id]
-            return response
+            return [{k: v for k, v in d.items() if k not in self.job_script_suppress} for d in results]
+        except Exception:
+            return results
 
     def create_job_script(
         self,
@@ -760,20 +761,18 @@ def list_job_submissions(self, all):
                     if NOT specified then only the user's job submissions
                     will be returned
         """
-        response = self.jobbergate_request(method="GET", endpoint=self.api_endpoint / "job-submissions")
+        params = dict(all=True) if all else None
+        envelope = self.jobbergate_request(
+            method="GET",
+            endpoint=self.api_endpoint / "job-submissions",
+            params=params,
+        )
+        results = envelope["results"]
 
         try:
-            response = [
-                {k: v for k, v in d.items() if k not in self.job_submission_suppress} for d in response
-            ]
-        except:  # noqa: E722
-            return response
-
-        if all:
-            return response
-        else:
-            response = [d for d in response if d["job_submission_owner"] == self.user_id]
-            return response
+            return [{k: v for k, v in d.items() if k not in self.job_submission_suppress} for d in results]
+        except Exception:
+            return results
 
     def create_job_submission(self, job_script_id, render_only, job_submission_name=""):
         """
@@ -948,37 +947,33 @@ def list_applications(self, all, user):
                     supplied, then every application for the user will be shown,
                     even the ones without identifier
         """
-        response = self.jobbergate_request(method="GET", endpoint=self.api_endpoint / "applications")
-        try:
-            response = [{k: v for k, v in d.items() if k not in self.application_suppress} for d in response]
-        except:  # noqa: E722
-            return response
-
-        # Sort
-        response.sort(key=lambda app: app["id"], reverse=True)
-        for app in response:
-            app["application_description"] = _fit_line(app["application_description"])
+        params = dict()
+        if all:
+            params["all"] = True
+        if user:
+            params["user"] = True
+        envelope = self.jobbergate_request(
+            method="GET",
+            endpoint=self.api_endpoint / "applications",
+            params=params,
+        )
+        results = envelope["results"]
 
-        # List every application of the user
-        if all and user:
-            response = [d for d in response if d["application_owner"] == self.user_id]
-            return response
-        # List all the applications from every user, even the ones without an identifier
-        elif all:
-            return response
-        # List only the applications of the user that have identifier
-        elif user:
-            default_applications = [
-                application for application in response if application.get("application_identifier")
-            ]
-            user_applications = [d for d in default_applications if d["application_owner"] == self.user_id]
-            return user_applications
-        # If no flag is passed, list all the applications, but only the ones that have identifier
-        else:
-            default_applications = [
-                application for application in response if application.get("application_identifier")
-            ]
-            return default_applications
+        try:
+            return sorted(
+                [
+                    {
+                        k: (v if k != "application_description" else _fit_line(v))
+                        for (k, v) in d.items()
+                        if k not in self.application_suppress
+                    }
+                    for d in results
+                ],
+                key=lambda app: app["id"],
+                reverse=True,
+            )
+        except Exception:
+            return results
 
     def create_application(
         self,


Test patch:
diff --git a/jobbergate-api/jobbergateapi2/tests/apps/applications/test_routers.py b/jobbergate-api/jobbergateapi2/tests/apps/applications/test_routers.py
index cf40668c..5da1bf5a 100644
--- a/jobbergate-api/jobbergateapi2/tests/apps/applications/test_routers.py
+++ b/jobbergate-api/jobbergateapi2/tests/apps/applications/test_routers.py
@@ -290,7 +290,7 @@ async def test_get_application_by_id_bad_permission(client, application_data, in
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_get_application_all_from_user(client, application_data, inject_security_header):
+async def test_get_applications__no_params(client, application_data, inject_security_header):
     """
     Test GET /applications returns only applications owned by the user making the request.
 
@@ -299,9 +299,9 @@ async def test_get_application_all_from_user(client, application_data, inject_se
     only applications owned by the user making the request.
     """
     applications = [
-        Application(id=1, application_owner_id="owner1", **application_data),
-        Application(id=2, application_owner_id="owner1", **application_data),
-        Application(id=3, application_owner_id="owner999", **application_data),
+        Application(id=1, identifier="app1", application_owner_id="owner1", **application_data),
+        Application(id=2, identifier="app2", application_owner_id="owner1", **application_data),
+        Application(id=3, identifier="app3", application_owner_id="owner999", **application_data),
     ]
     await insert_objects(applications, applications_table)
     count = await database.fetch_all("SELECT COUNT(*) FROM applications")
@@ -312,14 +312,17 @@ async def test_get_application_all_from_user(client, application_data, inject_se
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert len(data) == 2
-    assert data[0]["id"] == 1
-    assert data[1]["id"] == 2
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1, 2, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=3, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_get_application_all_from_user_bad_permission(client, application_data, inject_security_header):
+async def test_get_application___bad_permission(client, application_data, inject_security_header):
     """
     Test that it is not possible to list applications without proper permission.
 
@@ -343,35 +346,53 @@ async def test_get_application_all_from_user_bad_permission(client, application_
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_get_application_all_from_user_empty(client, application_data, inject_security_header):
+async def test_get_applications__with_user_param(client, application_data, inject_security_header):
     """
-    Test applications list doesn't include applications owned by other users.
+    Test applications list doesn't include applications owned by other users when the `user`
+    parameter is passed.
 
     This test proves that the user making the request cannot see applications owned by other users.
     We show this by creating applications that are owned by another user id and assert that
     the user making the request to list applications doesn't see any of the other user's
-    applications in the response, len(resp.json()) == 0.
+    applications in the response
     """
     applications = [
-        Application(id=1, application_owner_id=999, **application_data),
-        Application(id=2, application_owner_id=999, **application_data),
-        Application(id=3, application_owner_id=999, **application_data),
+        Application(id=1, identifier="app1", application_owner_id="owner1", **application_data),
+        Application(id=2, identifier="app2", application_owner_id="owner2", **application_data),
+        Application(id=3, identifier="app3", application_owner_id="owner1", **application_data),
     ]
     await insert_objects(applications, applications_table)
     count = await database.fetch_all("SELECT COUNT(*) FROM applications")
     assert count[0][0] == 3
 
     inject_security_header("owner1", "jobbergate:applications:read")
-    response = await client.get("/jobbergate/applications/")
+
+    response = await client.get("/jobbergate/applications")
     assert response.status_code == status.HTTP_200_OK
-    assert len(response.json()) == 0
+
+    data = response.json()
+    results = data.get("results")
+    assert [d["id"] for d in results] == [1, 2, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=3, page=None, per_page=None,)
+
+    response = await client.get("/jobbergate/applications?user=true")
+    assert response.status_code == status.HTTP_200_OK
+
+    data = response.json()
+    results = data.get("results")
+    assert [d["id"] for d in results] == [1, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=2, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_get_all_applications(client, application_data, inject_security_header):
+async def test_get_applications__with_all_param(client, application_data, inject_security_header):
     """
-    Test that listing applications, when all=True, contains applications owned by other users.
+    Test that listing applications, when all=True, contains applications without identifiers.
 
     This test proves that the user making the request can see applications owned by other users.
     We show this by creating three applications, two that are owned by the user making the request, and one
@@ -379,28 +400,41 @@ async def test_get_all_applications(client, application_data, inject_security_he
     applications.
     """
     applications = [
-        Application(id=1, application_owner_id="owner1", **application_data),
-        Application(id=2, application_owner_id="owner1", **application_data),
-        Application(id=3, application_owner_id="owner999", **application_data),
+        Application(id=1, identifier="app1", application_owner_id="owner1", **application_data),
+        Application(id=2, identifier=None, application_owner_id="owner1", **application_data),
+        Application(id=3, identifier="app3", application_owner_id="owner1", **application_data),
     ]
     await insert_objects(applications, applications_table)
     count = await database.fetch_all("SELECT COUNT(*) FROM applications")
     assert count[0][0] == 3
 
     inject_security_header("owner1", "jobbergate:applications:read")
+
+    response = await client.get("/jobbergate/applications")
+    assert response.status_code == status.HTTP_200_OK
+
+    data = response.json()
+    results = data.get("results")
+    assert [d["id"] for d in results] == [1, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=2, page=None, per_page=None,)
+
     response = await client.get("/jobbergate/applications/?all=True")
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert len(data) == 3
-    assert data[0]["id"] == 1
-    assert data[1]["id"] == 2
-    assert data[2]["id"] == 3
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1, 2, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=3, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_get_all_applications_pagination(client, application_data, inject_security_header):
+async def test_get_applications__with_pagination(client, application_data, inject_security_header):
     """
     Test that listing applications works with pagination.
 
@@ -408,26 +442,49 @@ async def test_get_all_applications_pagination(client, application_data, inject_
     We show this by creating three applications and assert that the response is correctly paginated.
     """
     applications = [
-        Application(id=1, application_owner_id="owner1", **application_data),
-        Application(id=2, application_owner_id="owner1", **application_data),
-        Application(id=3, application_owner_id="owner1", **application_data),
+        Application(id=1, identifier="app1", application_owner_id="owner1", **application_data),
+        Application(id=2, identifier="app2", application_owner_id="owner1", **application_data),
+        Application(id=3, identifier="app3", application_owner_id="owner1", **application_data),
+        Application(id=4, identifier="app4", application_owner_id="owner1", **application_data),
+        Application(id=5, identifier="app5", application_owner_id="owner1", **application_data),
     ]
     await insert_objects(applications, applications_table)
     count = await database.fetch_all("SELECT COUNT(*) FROM applications")
-    assert count[0][0] == 3
+    assert count[0][0] == 5
 
     inject_security_header("owner1", "jobbergate:applications:read")
-    response = await client.get("/jobbergate/applications/?limit=1&skip=0")
+    response = await client.get("/jobbergate/applications/?page=0&per_page=1")
+    assert response.status_code == status.HTTP_200_OK
+
+    data = response.json()
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=0, per_page=1,)
+
+    response = await client.get("/jobbergate/applications/?page=1&per_page=2")
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert [d["id"] for d in data] == [1]
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [3, 4]
 
-    response = await client.get("/jobbergate/applications/?limit=2&skip=1")
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=1, per_page=2,)
+
+    response = await client.get("/jobbergate/applications/?page=2&per_page=2")
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert [d["id"] for d in data] == [2, 3]
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [5]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=2, per_page=2,)
 
 
 @pytest.mark.asyncio
diff --git a/jobbergate-api/jobbergateapi2/tests/apps/job_scripts/test_routers.py b/jobbergate-api/jobbergateapi2/tests/apps/job_scripts/test_routers.py
index 1b0dbd72..758829a8 100644
--- a/jobbergate-api/jobbergateapi2/tests/apps/job_scripts/test_routers.py
+++ b/jobbergate-api/jobbergateapi2/tests/apps/job_scripts/test_routers.py
@@ -361,7 +361,7 @@ async def test_get_job_script_by_id_bad_permission(
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_script_from_user(client, application_data, job_script_data, inject_security_header):
+async def test_get_job_script__no_params(client, application_data, job_script_data, inject_security_header):
     """
     Test GET /job-scripts/ returns only job_scripts owned by the user making the request.
 
@@ -388,14 +388,17 @@ async def test_list_job_script_from_user(client, application_data, job_script_da
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert len(data) == 2
-    assert data[0]["id"] == 1
-    assert data[1]["id"] == 3
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=2, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_script_bad_permission(
+async def test_get_job_scripts__bad_permission(
     client, application_data, job_script_data, inject_security_header,
 ):
     """
@@ -422,7 +425,7 @@ async def test_list_job_script_bad_permission(
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_script_from_user_empty(
+async def test_get_job_scripts__excludes_other_owners(
     client, application_data, job_script_data, inject_security_header,
 ):
     """
@@ -431,7 +434,7 @@ async def test_list_job_script_from_user_empty(
     This test proves that the user making the request cannot see job_scripts owned by other users.
     We show this by creating job_scripts that are owned by another user id and assert that
     the user making the request to /job-scripts/ doesn't see any of the other user's
-    job_scripts in the response, len(response.json()) == 0.
+    job_scripts in the response
     """
     application = [Application(id=1, application_owner_id="owner1", **application_data)]
     await insert_objects(application, applications_table)
@@ -451,12 +454,17 @@ async def test_list_job_script_from_user_empty(
     response = await client.get("/jobbergate/job-scripts/")
     assert response.status_code == status.HTTP_200_OK
 
-    assert len(response.json()) == 0
+    data = response.json()
+    results = data.get("results")
+    assert results == []
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=0, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_script_all(
+async def test_get_job_scripts__with_all_param(
     client, application_data, job_script_data, inject_security_header,
 ):
     """
@@ -486,15 +494,17 @@ async def test_list_job_script_all(
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert len(data) == 3
-    assert data[0]["id"] == 1
-    assert data[1]["id"] == 2
-    assert data[2]["id"] == 3
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1, 2, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=3, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_script_pagination(
+async def test_get_job_scripts__with_pagination(
     client, application_data, job_script_data, inject_security_header,
 ):
     """
@@ -511,24 +521,47 @@ async def test_list_job_script_pagination(
         JobScript(id=1, job_script_owner_id="owner1", **job_script_data),
         JobScript(id=2, job_script_owner_id="owner1", **job_script_data),
         JobScript(id=3, job_script_owner_id="owner1", **job_script_data),
+        JobScript(id=4, job_script_owner_id="owner1", **job_script_data),
+        JobScript(id=5, job_script_owner_id="owner1", **job_script_data),
     ]
     await insert_objects(job_scripts, job_scripts_table)
 
     count = await database.fetch_all("SELECT COUNT(*) FROM job_scripts")
-    assert count[0][0] == 3
+    assert count[0][0] == 5
 
     inject_security_header("owner1", "jobbergate:job-scripts:read")
-    response = await client.get("/jobbergate/job-scripts/?limit=1&skip=0")
+    response = await client.get("/jobbergate/job-scripts/?page=0&per_page=1")
+    assert response.status_code == status.HTTP_200_OK
+
+    data = response.json()
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=0, per_page=1,)
+
+    response = await client.get("/jobbergate/job-scripts/?page=1&per_page=2")
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert [d["id"] for d in data] == [1]
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [3, 4]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=1, per_page=2,)
 
-    response = await client.get("/jobbergate/job-scripts/?limit=2&skip=1")
+    response = await client.get("/jobbergate/job-scripts/?page=2&per_page=2")
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert [d["id"] for d in data] == [2, 3]
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [5]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=2, per_page=2,)
 
 
 @pytest.mark.freeze_time
diff --git a/jobbergate-api/jobbergateapi2/tests/apps/job_submissions/test_routers.py b/jobbergate-api/jobbergateapi2/tests/apps/job_submissions/test_routers.py
index 395eacbb..e86398ef 100644
--- a/jobbergate-api/jobbergateapi2/tests/apps/job_submissions/test_routers.py
+++ b/jobbergate-api/jobbergateapi2/tests/apps/job_submissions/test_routers.py
@@ -164,7 +164,7 @@ async def test_get_job_submission_by_id_invalid(client, inject_security_header):
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_submission_from_user(
+async def test_get_job_submissions__no_param(
     client, application_data, job_submission_data, job_script_data, inject_security_header,
 ):
     """
@@ -195,14 +195,17 @@ async def test_list_job_submission_from_user(
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert len(data) == 2
-    assert data[0]["id"] == 1
-    assert data[1]["id"] == 3
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=2, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_submission_bad_permission(
+async def test_get_job_submissions__bad_permission(
     client, application_data, job_submission_data, job_script_data, inject_security_header,
 ):
     """
@@ -234,7 +237,7 @@ async def test_list_job_submission_bad_permission(
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_submission_from_user_empty(
+async def test_get_job_submission__excludes_other_owners(
     client, application_data, job_submission_data, job_script_data, inject_security_header,
 ):
     """
@@ -265,12 +268,17 @@ async def test_list_job_submission_from_user_empty(
     response = await client.get("/jobbergate/job-submissions/")
     assert response.status_code == status.HTTP_200_OK
 
-    assert len(response.json()) == 0
+    data = response.json()
+    results = data.get("results")
+    assert results == []
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=0, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
 @database.transaction(force_rollback=True)
-async def test_list_job_submission_all(
+async def test_get_job_submissions__with_all_param(
     client, application_data, job_submission_data, job_script_data, inject_security_header,
 ):
     """
@@ -302,10 +310,12 @@ async def test_list_job_submission_all(
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert len(data) == 3
-    assert data[0]["id"] == 1
-    assert data[1]["id"] == 2
-    assert data[2]["id"] == 3
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1, 2, 3]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=3, page=None, per_page=None,)
 
 
 @pytest.mark.asyncio
@@ -329,24 +339,47 @@ async def test_list_job_submission_pagination(
         JobSubmission(id=1, job_submission_owner_id="owner1", **job_submission_data),
         JobSubmission(id=2, job_submission_owner_id="owner1", **job_submission_data),
         JobSubmission(id=3, job_submission_owner_id="owner1", **job_submission_data),
+        JobSubmission(id=4, job_submission_owner_id="owner1", **job_submission_data),
+        JobSubmission(id=5, job_submission_owner_id="owner1", **job_submission_data),
     ]
     await insert_objects(job_submissions, job_submissions_table)
 
     count = await database.fetch_all("SELECT COUNT(*) FROM job_submissions")
-    assert count[0][0] == 3
+    assert count[0][0] == 5
 
     inject_security_header("owner1", "jobbergate:job-submissions:read")
-    response = await client.get("/jobbergate/job-submissions/?limit=1&skip=0")
+    response = await client.get("/jobbergate/job-submissions/?page=0&per_page=1")
+    assert response.status_code == status.HTTP_200_OK
+
+    data = response.json()
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [1]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=0, per_page=1,)
+
+    response = await client.get("/jobbergate/job-submissions/?page=1&per_page=2")
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert [d["id"] for d in data] == [1]
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [3, 4]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=1, per_page=2,)
 
-    response = await client.get("/jobbergate/job-submissions/?limit=2&skip=1")
+    response = await client.get("/jobbergate/job-submissions/?page=2&per_page=2")
     assert response.status_code == status.HTTP_200_OK
 
     data = response.json()
-    assert [d["id"] for d in data] == [2, 3]
+    results = data.get("results")
+    assert results
+    assert [d["id"] for d in results] == [5]
+
+    metadata = data.get("metadata")
+    assert metadata == dict(total=5, page=2, per_page=2,)
 
 
 @pytest.mark.freeze_time
diff --git a/jobbergate-api/jobbergateapi2/tests/test_pagination.py b/jobbergate-api/jobbergateapi2/tests/test_pagination.py
index 66c49986..ccc946d6 100644
--- a/jobbergate-api/jobbergateapi2/tests/test_pagination.py
+++ b/jobbergate-api/jobbergateapi2/tests/test_pagination.py
@@ -1,33 +1,115 @@
 """
 Test the pagination.
 """
-from jobbergateapi2.pagination import Pagination
+import pytest
+from pydantic import ValidationError
+
+from jobbergateapi2.apps.applications.models import applications_table
+from jobbergateapi2.apps.applications.schemas import Application
+from jobbergateapi2.pagination import Pagination, package_response
+from jobbergateapi2.storage import database
+from jobbergateapi2.tests.apps.conftest import insert_objects
+
+
+def test_init_fails_on_invalid_parameters():
+    """
+    Tests that the parameters are valid or an exception will be raised.
+    """
+    with pytest.raises(ValidationError, match="ensure this value is greater than or equal to 0"):
+        Pagination(page=-1, per_page=1)
+
+    with pytest.raises(ValidationError, match="ensure this value is greater than 0"):
+        Pagination(page=1, per_page=0)
 
 
 def test_string_conversion():
     """
     Test the pagination as string.
     """
-    pagination = Pagination()
+    pagination = Pagination(page=13, per_page=21)
 
-    assert str(pagination) == f"limit: {pagination.limit}, skip: {pagination.skip}"
+    assert str(pagination) == "page=13 per_page=21"
 
 
-def test_pagination_with_default_values():
+def test_dict():
     """
-    Test the pagination default values.
+    Test the dict() method on a pagination instance.
     """
+    pagination = Pagination(page=13, per_page=21)
+    assert pagination.dict() == dict(page=13, per_page=21)
+
+    pagination = Pagination(page=None, per_page=999)
+    assert pagination.dict() == dict()
+
+
+@pytest.mark.asyncio
+@database.transaction(force_rollback=True)
+async def test_package_response__without_pagination():
+    """
+    Test the package_response method without pagination.
+    """
+    application_data = dict(
+        application_name="test_name",
+        application_file="the\nfile",
+        application_config="the configuration is here",
+    )
+    applications = [
+        Application(id=i, application_owner_id=f"owner{i}", **application_data) for i in range(1, 6)
+    ]
+    await insert_objects(applications, applications_table)
+
+    query = applications_table.select()
     pagination = Pagination()
+    response = await package_response(Application, query, pagination)
 
-    assert pagination.limit == 10
-    assert pagination.skip == 0
+    results = response.results
+    assert len(results) == 5
+    for i in range(5):
+        assert isinstance(results[i], Application)
+        assert results[i].id == i + 1
 
+    metadata = response.metadata
+    assert metadata
+    assert metadata.total == 5
+    assert metadata.page is None
+    assert metadata.per_page is None
 
-def test_pagination_with_custom_values():
+
+@pytest.mark.asyncio
+@pytest.mark.parametrize(
+    "page,per_page,total", [(0, 1, 1), (6, 2, 13), (2, 3, 10), (7, 2, 13)],
+)
+@database.transaction(force_rollback=True)
+async def test_package_response__with_pagination(page, per_page, total):
     """
-    Test the pagination with custom values.
+    Test the package_response method with pagination.
+
+    Parameters test pagination at upper bound and lower bound of total
     """
-    pagination = Pagination(limit=100, skip=1)
+    application_data = dict(
+        application_name="test_name",
+        application_file="the\nfile",
+        application_config="the configuration is here",
+    )
+    applications = [
+        Application(id=i, application_owner_id=f"owner{i}", **application_data) for i in range(1, total + 1)
+    ]
+    await insert_objects(applications, applications_table)
+
+    query = applications_table.select()
+    pagination = Pagination(page=page, per_page=per_page)
+    response = await package_response(Application, query, pagination)
+
+    results = response.results
+    # Clamps the expected count at upper bound
+    expected_count = max(0, min(total - page * per_page, per_page))
+    assert len(results) == expected_count
+    for i in range(expected_count):
+        assert isinstance(results[i], Application)
+        assert results[i].id == i + (page * per_page) + 1
 
-    assert pagination.limit == 100
-    assert pagination.skip == 1
+    metadata = response.metadata
+    assert metadata
+    assert metadata.total == total
+    assert metadata.page == page
+    assert metadata.per_page == per_page