Title: List of sequenced Deuterostomia genomes Content: This list of sequenced Deuterostomia genomes contains species for which complete genome sequences have been assembled, annotated and published. == Deuterostomia == === Hemichordates === * Saccoglossus kowalevskii, Enteropneusta (2015) * Ptychodera flava, Enteropneusta (2015) ===Echinoderms=== * Acanthaster planci, starfish (2014) * Apostichopus japonicus, sea cucumber (2017) * Strongylocentrotus purpuratus, a sea urchin and model deuterostome (2006) ===Tunicates=== * Ciona intestinalis, a tunicate (2002) * Ciona savignyi, a tunicate (2007) * Oikopleura dioica, a larvacean (2001). ===Cephalochordates=== * Branchiostoma floridae, a lancelet (2008) ===Cyclostomes=== * Petromyzon marinus, a lamprey (2009, 2013) ===Cartilaginous fish=== * Callorhinchus milii, an elephant shark (2007) * Rhincodon typus, Whale shark (2017) * Carcharodon carcharias, Great white shark ( 2018) * Chiloscyllium punctatum, Brownbanded bamboo shark (2018) * Scyliorhinus torazame, Cloudy catshark (2018) ===Bony fish=== * Order Anabantiformes ** Betta splendens, Siamese fighting fish (2018) * Order Beloniformes ** Oryzias latipes, medaka (2007) * Order Centrarchiformes ** Oplegnathus fasciatus, barred knifejaw (2019) * Order Characiformes ** Astyanax mexicanus, Mexican tetra (2014) * Order Cichliformes ** Oreochromis niloticus, Nile tilapia (2019) ** Metriaclima zeb, Lake Malawi cichlid (2019) * Order Clupeiformes ** Clupea harengus, Atlantic herring (2020) ** Coilia nasus, Japanese grenadier anchovy (2020) ** Sardina pilchardus, European sardine (2019) * Order Coelacanthiformes ** Latimeria chalumnae, West Indian Ocean coelacanth and oldest known living lineage of Sarcopterygii (2013Ensembl entry) * Order Cypriniformes ** Anabarilius grahami Regan, Kanglang fish (2018) ** Danio rerio, a zebrafish (2007) ** Heterandria formosa, Least Killifish (2019) ** Oxygymnocypris stewartii,(2019) ** Megalobrama amblycephala, blunt snout bream (2017) * Order Cyprinodontiformes ** Heterandria formosa, least killifish (2019) ** Xiphophorus maculatus, platyfish (2013) ** Nothobranchius furzeri, turquoise killifish (2015) * Order Esociformes ** Esox lucius, northern pike (2014) * Order Gadiformes ** Gadus morhua, Atlantic cod (2011Ensembl Pre entry) * Order Gasterosteiformes ** Gasterosteus aculeatus, three-spined stickleback (2006, 2012) * Order Gymnotiformes ** Electrophorus electricus, electric eel (2014) * Order Lepisosteiformes ** Lepisosteus oculatus, spotted gar * Order Osmeriformes ** Protosalanx hyalocranius, clearhead icefish (2017) * Order Perciformes ** Channa argus, northern snakehead (2017) ** Dissostichus mawsoni, Antarctic toothfish (2019) ** Eleginops maclovinus, Patagonian robalo (2019) ** Larimichthys crocea, large yellow croaker (2014) ** Lutjanus campechanus, Northern red snapper (2020) ** Parachaenichthys charcoti, Antarctic dragonfish (2017) ** Seriola dumerili, Greater amberjack (2017) ** Sillago sinica, chinese sillago (2018) ** Sparus aurata, gilt-head bream (2018) * Order Salmoniformes ** Salmo salar, Atlantic salmon (2016) ** Oncorhynchus mykiss, rainbow trout (2014) ** Oncorhynchus tshawytscha, Chinook salmon (2018) * Order Scorpaeniformes ** Sebastes schlegelii, Black rockfish (2018) * Order Siluriformes ** Ictalurus punctatus, channel catfish (2016) * Order Tetraodontiformes ** mola mola, ocean sunfish (2016) ** Takifugu rubripes, a puffer fish (International Fugu Genome Consortium 2002) ** Tetraodon nigroviridis, a puffer fish (2004) ===Amphibians=== * Ambystoma mexicanum, Axolotl (2018) * Xenopus tropicalis, western clawed frog (2010) * Nanorana parkeri, High Himalaya frog (2015) * Oophaga pumilio, Strawberry poison-dart frog (2018) * Rana [Lithobates] catesbeiana, North American bullfrog (2017) * Rhinella marina, Cane toad (2018) * Vibrissaphora ailaonica, Mustache toad (2019) * Leptobrachium leishanense, Leishan Mustache toad (2019) ===Reptiles=== * Order Crocodylia ** Alligator mississippiensis, American alligator (2012) ** Alligator sinensis, Chinese alligator (2013, 2014) ** Crocodylus porosus, salt water crocodile (2012) ** Gavialis gangeticus, Indian gharial (2012) * Order Squamata ** Anolis carolinensis JBL SC #1, green anole lizard (2011) ** Dopasia gracilis, Burmese glass lizard, (2015) ** Emydocephalus ijimae, Ijima's turtle-headed sea snake, (2019) ** Eublepharis macularius, Leopard gecko (2016) ** Hydrophis melanocephalus, slender-necked sea snake, (2019) ** Laticauda colubrina, yellow-lipped sea krait, (2019) ** Laticauda laticaudata, blue-linged sea krait, (2019) ** Ophiophagus hannah, king cobra (2013) ** Pantherophis guttatus, corn snake (2014) ** Pogona vitticeps, Australian dragon lizard (2015) ** Python molurus bivittatus, Burmese python (2013) ** Salvator Merinae, tegu lizard (2018) ** Shinisaurus crocodilurus, Chinese crocodile lizard, (2017) * Order Testudines (Chelonii) ** Chelonia mydas, green sea turtle (2013) ** Chrysemys picta bellii, western painted turtle (2013) ** Pelodiscus sinensis, soft-shelled turtle (2013) ** Platysternon megacephalum, Big-headed turtle (2019) ===Birds=== * Order Accipitriformes ** Haliaeetus albicilla, white-tailed eagle (2014) ** Haliaeetus leucocephalus, bald eagle (2014) ** Aegypius monachus, cinereous vulture (2015) ** Aquila chrysaetos, golden eagle (2018) * Order Anseriformes ** Anas platyrhynchos, mallard duck (or wild duck) (2013) * Order Apodiformes ** Chaetura pelagica, chimney swift (2014) * Order Bucerotiformes ** Buceros rhinoceros silvestris, rhinoceros hornbill (2014) * Order Caprimulgiformes ** Antrostomus carolinensis, chuck-will's-widow (2014) * Order Cariamiformes ** Cariama cristata, red-legged seriema (2014) * Order Cathartiformes ** Cathartes aura, turkey vulture (2014) * Order Charadriiformes ** Charadrius vociferus, killdeer (2014) ** Himantopus novaezelandiae, kakī/black stilt (2019) ** Himantopus himantopus, pied stilt (2019) ** Recurvirostra avosetta, pied avocet (2019) * Order Ciconiiformes ** Nipponia nippon, crested ibis (2014) * Order Coliiformes ** Colius striatus, speckled mousebird (2014) * Order Columbiformes ** Columba livia, pigeon (2014) * Order Coraciiformes ** Merops nubicus, carmine bee-eater (2014) * Order Cuculiformes ** Cuculus canorus, common cuckoo (2014) ** Tauraco erythrolophus, red-crested turaco (2014) * Order Eurypygiformes ** Eurypyga helias, sunbittern (2014) * Order Falconiformes ** Falco cherrug, saker falcon (2013) ** Falco peregrinus, peregrine falcon (2013) * Order Galliformes **Arborophila rufipectus, Sichuan Partridge (2019) **Gallus gallus, chicken (2004) **Meleagris gallopavo, domesticated turkey (2011) ** Numida meleagris, helmeted guinea fowl (2019) ** Pavo cristatus, Indian peafowl (2018) **Phasianus colchicus, Common Pheasant (2019) **Syrmaticus mikado, mikado pheasant (2018) **Tetrao tetrix, black grouse (2014) * Order Gaviiformes ** Gavia stellata, red-throated loon (2014) * Order Gruiformes ** Balearica regulorum gibbericeps, grey crowned-crane (2014) ** Chlamydotis macqueenii, MacQueen's bustard (2014) * Order Leptosomiformes ** Leptosomus discolor, cuckoo-roller (2014) * Order Mesitornithiformes ** Mesitornis unicolor, brown mesite (2014) * Order Opisthocomiformes ** Opisthocomus hoazin, hoatzin (2014) * Order Passeriformes ** Acanthisitta chloris, rifleman (2014) ** Corvus brachyrhynchos, American crow (2014) ** Corvus hawaiiensis, Hawaiian crow (2018) ** Eopsaltria australis, Eastern yellow robin (2019) ** Ficedula albicollis, collared flycatcher (2012) ** Ficedula hypoleuca, pied flycatcher (2012) ** Geospiza fortis, medium ground-finch (2014) ** Hirundo rustica, barn swallow (2018) ** Lonchura striata domestica, Society finch (2018) ** Manacus vitellinus, golden-collared manakin (2014) ** Lycocorax pyrrhopterus, Paradise-crow (2019) ** Manacus vitellinus, golden-collared manakin (2014) ** Paradisaea rubra, red bird-of-paradise (2019) ** Pteridophora alberti, king of saxony bird-of- paradise (2019) ** Ptiloris paradiseus, paradise riflebird (2019) ** Taeniopygia guttata, zebra finch (2010) * Order Pelecaniformes ** Egretta garzetta, little egret (2014) ** Pelecanus crispus, Dalmatian pelican (2014) * Order Phaethontiformes ** Phaethon lepturus, white-tailed tropicbird (2014) * Order Phoenicopteriformes ** Phoenicopterus ruber ruber, American flamingo (2014) * Order Piciformes ** Picoides pubescens, downy woodpecker (2014) * Order Podicipediformes ** Podiceps cristatus, great crested grebe (2014) * Order Procellariiformes ** Fulmarus glacialis, northern fulmar (2014) * Order Pterocliformes ** Pterocles gutturalis, yellow-throated sandgrouse (2014) * Order Psittaciformes ** Amazona leucocephala, Cuban amazon (2019) ** Amazona ventralis, Hispaniolan amanzon (2019) ** Amazona vittata, Puerto Rican parrot (2012) ** Ara macao, Scarlet macaw (2013) ** Cyanoramphus malherbi, kākāriki karaka (2020) ** Melopsittacus undulatus, budgerigar (2014) ** Nestor notabilis, kea (2014) * Order Struthioniformes ** Struthio camelus australis, common ostrich (2014) * Order Sphenisciformes ** Aptenodytes forsteri, emperor penguin (2014) **Aptenodytes patagonicus, king penguin (2019) **Eudyptes chrysocome, Western rockhopper penguin (2019) **Eudyptes chrysolophus chrysolophus, Macaroni penguin (2019) **Eudyptes chrysolophus schlegeli, Royal penguin (2019) **Eudyptes filholi, Eastern rockhopper penguin (2019) **Eudyptes moseleyi, Northern rockhopper penguin (2019) **Eudyptes pachyrhynchus, Fiordland-crested penguin (2019) **Eudyptes robustus, Snares- crested penguin (2019) **Eudyptes sclateri, Erect-crested penguin (2019) **Eudyptula minor albosignata, white-flippered penguin (2019) **Eudyptula minor minor, little blue penguin (2019) **Eudyptula novaehollandiae, fairy penguin (2019) **Megadyptes antipodes antipodes, yellow eyed penguin or hoiho (2019) **Pygoscelis adeliae, Adélie penguin (2014) **Pygoscelis antarctica, chinstrap penguin (2019) **Pygoscelis papua, gentoo penguin (2019) **Spheniscus demersus, African penguin (2019) **Spheniscus humboldti, Humboldt penguin (2019) **Spheniscus magellanicus, Magellanic penguin (2019) **Spheniscus mendiculus, Galápagos penguin (2019) * Order Strigiformes ** Tyto alba, barn owl (2014) ** Strix occidentalis caurina, northern spotted owl (2017) ** Strix varia, Barred owl (2017) * Order Suliformes ** Phalacrocorax auritus, double-crested cormorant (2017) ** Phalacrocorax brasilianus, Neotropic cormorant (2017) ** Phalacrocorax carbo, great cormorant (2014) ** Phalacrocorax harrisi, Galapagos cormorant (2017) ** Phalacrocorax pelagicus, pelagic cormorant (2017) * Order Tinamiformes ** Tinamus guttatus, white- throated tinamou (2014) * Order Trochiliformes ** Calypte anna, Anna's hummingbird (2014) * Order Trogoniformes ** Apaloderma vittatum, bar-tailed trogon (2014) ===Mammals=== * Subclass Prototheria, Order Monotremata, Family Ornithorhynchidae ** Ornithorhynchus anatinus, platypus (2007) * Subclass Theria (marsupials and placental mammals) ** Infraclass Metatheria (marsupials) *** Order Didelphimorphia, Family Didelphidae (opossums) **** Monodelphis domestica, gray short-tailed opossum (2007) *** Order Dasyuromorphia **** Family Dasyuridae ***** Sarcophilus harrisii, Tasmanian devil (Ensembl entry) **** Family Thylacinidae ***** Thylacinus cynocephalus, thylacine  *** Order Diprotodontia **** Family Macropodidae ***** Macropus eugenii, tammar wallaby (2011) **** Family Phascolarctidae ***** Phascolarctos cinereus, koala (2013 draft) *** ** Infraclass Eutheria (placental mammals) **# Order Erinaceomorpha, Family Erinaceidae **#* Erinaceus europaeus, European hedgehog **# Order Eulipotyphla, Family Solenodontidae **##Solenodon Parodoxus, Hispaniolan solenodon (2018) **#Order Chiroptera **#* Family Megadermatidae **#** Megaderma lyra, greater false vampire bat (2013) **#* Family Mormoopidae **#** Pteronotus parnellii, Parnell's mustached bat (2013) **#* Family Pteropodidae **#** Pteropus vampyrus, fruit bat (2012) **#** Eidolon helvum, Old World fruit bat (2013) **#* Family Rhinolophidae **#** Rhinolophus ferrumequinum, greater horseshoe bat (2013) **#* Family Vespertilionidae **#** Myotis lucifugus, little brown bat (2010Ensembl entry) **#* Family Phyllostomidae **#**Leptonycteris yerbabuenae, long nosed bat (2020) **#** Leptonycteris nivalis, greater long nosed bat (2020) **#** Musonycteris harrisoni, banana bat (2020) **#** Artibeus jamaicensis, Jamaican fruit bat (2020) **#** Macrotus waterhousii, Waterhouse's leaf-nosed bat (2020) **# Order Primates **#* Family Galagidae **#** Otolemur garnettii, small-eared galago, or bushbaby (Ensembl entry) **#* Family Cercopithecidae **#** Macaca mulatta, rhesus macaque (2007 & Chinese rhesus macaque Macaca mulatta lasiota in 2011) **#** Macaca fascicularis, Cynomolgus or crab-eating macaque (2011) **#** Rhinopithecus roxellana, golden snub-nosed monkey (2019) **#* Family Hominidae **#** Subfamily Ponginae **#*** Pongo pygmaeus/Pongo abelii, orangutan (Borneo/Sumatra) (2011) **#** Subfamily Homininae **#*** Gorilla gorilla, western gorilla (2012) **#*** Homo sapiens, modern human (draft 2001 91%-96% complete) **#*** Homo neanderthalensis, Neanderthal (draft 2010) **#*** Pan troglodytes, chimpanzee (2005) **#*** Pan paniscus, bonobo (2012) **#* Family Callitrichidae **#** Callithrix jacchus, marmoset (2010,Ensembl entry whole genome 2014) **# Order Carnivora **#* Family Felidae **#** Acinonyx jubatus, African cheetah (2015) **#** Felis silvestris catus, cat (2007) **#** Panthera leo, lion (2013) **#** Panthera pardus, Amur leopard (2016) **#** Panthera tigris altaica, Amur tiger (or Siberian tiger) (2013) **#** Panthera tigris tigris, Bengal tiger (2013 **#** Panthera uncia, snow leopard (2013) **#** Prionailurus bengalensis, leopard cat (2016) **#* Family Canidae **#** Canis lupus familiaris, dog (2005) **#** Canis lupus lupus, wolf (2017). **#** Lycaon pictus, african wild dog (2018) **#* Family Ursidae **#** Ailuropoda melanoleuca, giant panda (2010) **#** Ursus arctos ssp. horribilis, Grizzly bear (2018) **#** Ursus americanus, American black bear (2019) **#** Ursus maritimus, Polar bear (2014) **#* Family Odobenidae **#** Odobenus rosmarus, walrus (2015) **#* Family Mustelidae **#** Enhydra lutris kenyoni, sea otter (2017) **#** Mustela erminea, stoat (2018) **#** Mustela putorius furo, ferret (2014) **#** Pteronura brasiliensis, giant otter (2019) **# Order Cetacea **#* Family Delphinidae **#** Tursiops truncatus, bottlenosed dolphin (2012) **#** Balaenoptera acutorostrata, common minke whale (2014) **#** Balaenoptera physalus, fin whale (2014) **#** Neophocaena phocaenoides, finless porpoise (2014) **#** Orcinus orca, killer whale (2015) **#** Sousa Chinensis, Indo-Pacific humpback dolphin (2019) **#* Family Monodontidae **#** Delphinapterus, beluga whale (2017) **#* Family Physeteridae **#** Physeter macrocephalus, sperm whale (2019) **# Order Proboscidea, Family Elephantidae **#* Elephas maximus, Asian elephant (2015) **#* Loxodonta africana, African elephant (2009UCSC browser entry) **# Order Sirenia (sea cows) **#* Family Trichechidae **#** Trichechus manatus, West Indian manatee (2015) **# Order Perissodactyla (odd-toed ungulates), Family Equidae **#* Equus ferus caballus, horse (2009 2018) **# Order Artiodactyla (even-toed ungulates) **#* Family Antilocapridae **#** Antilocapra americana, Pronghorn (2019) **#* Family Suidae **#** Sus scrofa, pig (2012) **#* Family Bovidae **#** Ammotragus lervia, Barbary sheep (2019) **#** Antidorcas marsupialis, Springbox (2019) **#** Bison bonasus, European bison (2017) **#** Bos grunniens, yak 2012  **#** Bos primigenius indicus, zebu or Brahman cattle (2012) **#** Bos primigenius taurus, cow 2009  **#** Bubalus bubalis, river buffalo (2017) **#** Capra ibex, Goats (2019) **#** Cephalophus harveyi, Harvey's duiker (2019) **#** Connochaetes taurinus, blue wildebeest (2019) **#** Damaliscus lunatus, common tsessebe (2019) **#** Gazella thomsoni, Thomson's gazelle (2019) **#** Hippotragus niger, Sable Antelope (2019) **#** Kobus ellipsiprymnus, Waterbuck (2019) **#** Litocranius walleri, Gerenuk (2019) **#** Oreotragus oreotragus, Klipspringer (2019) **#** Oryx gazella, Gemsbok (2019) **#** Ourebia ourebi, Oribi (2019) **#** Ovis ammon, Argali (2019) **#** Ovis ammon polii, marco polo sheep (2017) **#** Nanger granti, Grant's gazelle (2019) **#** Neotragus moschatus, Suni (2019) **#** Neotragus pygmaeus, Royal antelope (2019) **#** Philantomba maxwellii, Maxwell's duiker (2019) **#** Procapra przewalskii, Przewalski's gazelle (2019) **#** Pseudois nayaur, Bharal (2019) **#** Raphicerus campestris, Steenbox (2019) **#** Redunca redunca, Bohor reedbuck (2019) **#** Syncerus caffer, African buffalo (2019) **#** Sylvicapra grimmia, common duiker (2019) **#** Tragelaphus, Spiral-horned bovine (2019) **#** Tragelaphus buxtoni, Mountain nyala (2019) **#** Tragelaphus strepsiceros, Greater kudu (2019) **#** Tragelaphus imberbis, Lesser kudu (2019) **#** Tragelaphus spekii, Sitatunga (2019) **#** Tragelaphus scriptus, Bushbuck (2019) **#** Taurotragus oryx, Common eland (2019) **#* Family Cervidae **#** Cervus albirostris, Tharold's deer (2019) **#** Elaphurus davidianus, Père David's deer (2018) **#** Muntiacus crinifrons, hairy-fronted muntjac (2019) **#** Muntiacus muntjak, Indian muntjac (2019) **#** Muntiacus reevesi, Reeves's muntjac (2019) **#** Rangifer Tarandus, Reindeer (2017) **#* Family Giraffidae **#** Giraffa camelopardalis, Giraffe (2019) **#** Giraffa camelopardalis tippelskirchi, Masai giraffe (2019) **#** Okapia johnstoni, Okapi (2019) **#* Family Moschidae **#** Moschus berezovskii, forest musk deer (2018) **#** Moschus chrysogaster, Alpine musk deer (2019) **#* Family Tragulidae **#** Tragulus javanicus, Java mouse-deer (2019) **# Order Rodentia **#* Family Caviidae **#** Hydrochoerus hydrochaeris, capybara (2018) **#* Family Cricetidae **#** Peromyscus leucopus, white-footed mouse (2019) **#* Family Muridae **#** Mastomys coucha, Southern multimammate mouse (2019) **#** Mus musculus Strain: C57BL/6J, mouse (2002) **#** Rattus norvegicus, rat (2004) **# Order Lagomorpha **#* Family Leporidae **#** Oryctolagus cuniculus, European rabbit (2010Ensembl entry)