SoroushVahidi/scidocs huggingface dataset:
PV-OWL — Pharmacovigilance surveillance through semantic web-based platform for continuous and integrated monitoring of drug-related adverse effects in open data sources and social media
(2017)

The recent EU regulation on Pharmacovigilance [Regulation (EU) 1235/2010, Directive 2010/84/EU] imposes both to Pharmaceutical companies and Public health agencies to maintain updated safety information of drugs, monitoring all available data sources. Here, we present our project aiming to develop a web platform for continuous monitoring of adverse effects of medicines (pharmacovigilance), by integrating information from public databases, scientific literature and social media. The project will start by scanning all available data sources concerning drug adverse events, both open (e.g., FAERS — FDA Adverse Event Reporting Systems, medical literature, social media, etc.) and proprietary data (e.g., discharge hospital records, drug prescription archives, electronic health records), that require agreement with respective data owners. Subsequent, pharmacovigilance experts will perform a semi-automatic mapping of codes identifying drugs and adverse events, to build the thesaurus of the web based platform. After these preliminary activities, signal generation and prioritization will be the core of the project. This task will result in risk confidence scores for each included data source and a comprehensive global score, indicating the possible association between a specific drug and an adverse event. The software framework MOMIS, an open source data integration system, will allow semi-automatic virtual integration of heterogeneous and distributed data sources. A web platform, based on MOMIS, able to merge many heterogeneous data sets concerning adverse events will be developed. The platform will be tested by external specialized subjects (clinical researchers, public or private employees in pharmacovigilance field). The project will provide a) an innovative way to link, for the first time in Italy, different databases to obtain novel safety indicators; b) a web platform for a fast and easy integration of all available data, useful to verify and validate hypothesis generated in signal detection. Finally, the development of the unified safety indicator (global risk score) will result in a compelling, easy-to-understand, visual format for a broad range of professional and not professional users like patients, regulatory authorities, clinicians, lawyers, human scientists.
Mundanely miraculous: the robot in healthcare
(2014)

As both hero and villain, robots have played prominent roles in media such as films and books. Now, robots are no longer hidden away from the public conscious in fictive worlds or real-life factories. Robots are becoming a real part of our everyday encounters in environments such as healthcare settings. In this paper, we describe a discourse analysis of 60 YouTube videos that showcase robots in healthcare activities. Our narrative weaves three discourses that construct visions of the healthcare robot: (1) the miraculous robot as the robot that enhances patient care; (2) the mundane robot as the innocuous robot that integrates into the workflow seamlessly; and (3) the preternatural robot as the robot that is miraculous but never mundane. We propose several contrary visions to this dominant narrative of healthcare robots as a framework for future fieldwork that, we argue, should investigate the institutions of robotics.
An efficient deep neural networks training framework for robust face recognition
(2017)

In recent years, the triplet loss-based deep neural networks (DNN) are widely used in the task of face recognition and achieve the state-of-the-art performance. However, the complexity of training the triplet loss-based DNN is significantly high due to the difficulty in generating high-quality training samples. In this paper, we propose a novel DNN training framework to accelerate the training process of the triplet loss-based DNN and meanwhile to improve the performance of face recognition. More specifically, the proposed framework contains two stages: 1) The DNN initialization. A deep architecture based on the softmax loss function is designed to initialize the DNN. 2) The adaptive fine-tuning. Based on the trained model, a set of high-quality triplet samples is generated and used to fine-tune the network, where an adaptive triplet loss function is introduced to improve the discriminative ability of DNN. Experimental results show that, the model obtained by the proposed DNN training framework achieves 97.3% accuracy on the LFW benchmark with low training complexity, which verifies the efficiency and effectiveness of the proposed framework.
Complexity in Phonological Treatment: Clinical Factors.
(2001)

The construct of complexity has been advanced recently as a potentially contributing variable in the efficacy of treatment for children with functional phonological disorders. Thus far, complexity has been defined in terms of linguistic and psycholinguistic structure, articulatory phonetic variables, and conventional clinical factors. The focus of this paper is on clinical complexity as it influences the selection of target sounds for treatment, with three clinical factors reviewed: consistency of the error, normative age of acquisition, and number of errors to be treated. The collective findings suggest that treatment of seemingly more complex targets results in greater phonological gains. These results are integrated with converging evidence from other populations and language and learning domains.
Fitting Tweedie ’ s Compound Poisson Model to Insurance Claims Data : Dispersion Modelling
(1994)

We reconsider the problem of producing fair and accurate tariffs based on aggregated insurance data giving numbers of claims and total costs for the claims. Jørgensen and de Souza (Scand. Actuarial J., 1994) assumed Poisson arrival of claims and gamma distributed costs for individual claims. Jørgensen and de Souza (1994) directly modelled the risk or expected cost of claims per insured unit, μ say. They observed that the dependence of the likelihood function on μ is as for a linear exponential family, so that modelling similar to that of generalized linear models is possible. In this paper we observe that, when modelling the cost of insurance claims, it is generally necessary to model the dispersion of the costs as well as their mean. In order to model the dispersion we use the framework of double generalized linear models. Modelling the dispersion increases the precision of the estimated tariffs. The use of double generalized linear models also allows us to handle the case where only the total cost of claims and not the number of claims has been recorded.
Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum
(2016)

Animals use the sense of vision to scan their environment, respond to threats, and locate food sources. The neural computations underlying the selection of a particular behavior, such as escape or approach, require flexibility to balance potential costs and benefits for survival. For example, avoiding novel visual objects reduces predation risk but negatively affects foraging success. Zebrafish larvae approach small, moving objects ("prey") and avoid large, looming objects ("predators"). We found that this binary classification of objects by size is strongly influenced by feeding state. Hunger shifts behavioral decisions from avoidance to approach and recruits additional prey-responsive neurons in the tectum, the main visual processing center. Both behavior and tectal function are modulated by signals from the hypothalamic-pituitary-interrenal axis and the serotonergic system. Our study has revealed a neuroendocrine mechanism that modulates the perception of food and the willingness to take risks in foraging decisions.
inAir: measuring and visualizing indoor air quality
(2009)

Good indoor air quality is a vital part of human health. Poor indoor air quality can contribute to the development of chronic respiratory diseases such as asthma, heart disease, and lung cancer. Complicating matters, poor air quality is extremely difficult for humans to detect through sight and smell alone and existing sensing equipment is designed to be used by and provide data for scientists rather than everyday citizens. We propose inAir, a tool for measuring, visualizing, and learning about indoor air quality. inAir provides historical and real-time visualizations of indoor air quality by measuring tiny hazardous airborne particles as small as 0.5 microns in size. Through user studies we demonstrate how inAir promotes greater awareness and motivates individual actions to improve indoor air quality.
Sub-sentencial Paraphrasing by Contextual Pivot Translation
(2009)

The ability to generate or to recognize paraphrases is key to the vast majority of NLP applications. As correctly exploiting context during translation has been shown to be successful, using context information for paraphrasing could also lead to improved performance. In this article, we adopt the pivot approach based on parallel multilingual corpora proposed by (Bannard and Callison-Burch, 2005), which finds short paraphrases by finding appropriate pivot phrases in one or several auxiliary languages and back-translating these pivot phrases into the original language. We show how context can be exploited both when attempting to find pivot phrases, and when looking for the most appropriate paraphrase in the original subsentential “envelope”. This framework allows the use of paraphrasing units ranging from words to large sub-sentential fragments for which context information from the sentence can be successfully exploited. We report experiments on a text revision task, and show that in these experiments our contextual sub-sentential paraphrasing system outperforms a strong baseline system.
Spatial Filtering for EEG-Based Regression Problems in Brain–Computer Interface (BCI)
(2018)

Electroencephalogram (EEG) signals are frequently used in brain–computer interfaces (BCIs), but they are easily contaminated by artifacts and noise, so preprocessing must be done before they are fed into a machine learning algorithm for classification or regression. Spatial filters have been widely used to increase the signal-to-noise ratio of EEG for BCI classification problems, but their applications in BCI regression problems have been very limited. This paper proposes two common spatial pattern (CSP) filters for EEG-based regression problems in BCI, which are extended from the CSP filter for classification, by using fuzzy sets. Experimental results on EEG-based response speed estimation from a large-scale study, which collected 143 sessions of sustained-attention psychomotor vigilance task data from 17 subjects during a 5-month period, demonstrate that the two proposed spatial filters can significantly increase the EEG signal quality. When used in LASSO and <inline-formula><tex-math notation="LaTeX">$k$</tex-math></inline-formula>-nearest neighbors regression for user response speed estimation, the spatial filters can reduce the root-mean-square estimation error by <inline-formula><tex-math notation="LaTeX">$10.02-19.77\%$</tex-math></inline-formula>, and at the same time increase the correlation to the true response speed by <inline-formula><tex-math notation="LaTeX">$19.39-86.47\%$</tex-math></inline-formula>.
Robust TiN HM process to overcome under etch issue for SAV scheme on 14nm node
(2015)

For advance node such as 14nm technology and beyond, back end of line interconnect has implemented self-aligned via (SAV) schemes for better via-metal short process window [1]. A TiN metal hard mask (MHM) is used for the trench pattern definition, after which via lithography and partial via (PV) etch is performed where the TiN was opened. The via etch condition has very good selectivity so that via is formed in a self-aligned fashion by TiN HM [2]. It is indeed to have significant benefit of via to metal short [3]. However, one of the trade off in SAV scheme is the via under etch that whether or not via can well land on an opened oxide area during PV etch. To define the contact area between via resist hole and opened HM oxide as an effective area for via to open successfully. “Fig. 1” shows the effective area change during process variation due to Via alignment, Via photo resist CD variation (Via ADICD) and post hard mask etch CD variation (AMICD). “Fig. 2” shows the mechanism of this under etch failure mode and typical TEM image from 64nm metal pitch test vehicle. In this work, we try to enlarge the process window by an aggressive AMICD targeting in combining with a higher density TiN material to maintain profile.
Multi-view gait recognition using 3D convolutional neural networks
(2016)

In this work we present a deep convolutional neural network using 3D convolutions for Gait Recognition in multiple views capturing spatio-temporal features. A special input format, consisting of the gray-scale image and optical flow enhance color invariance. The approach is evaluated on three different datasets, including variances in clothing, walking speeds and the view angle. In contrast to most state-of-the-art Gait Recognition systems the used neural network is able to generalize gait features across multiple large view angle changes. The results show a comparable to better performance in comparison with previous approaches, especially for large view differences.
The TUM Gait from Audio, Image and Depth (GAID) database: Multimodal recognition of subjects and traits
(2014)

Recognizing people by the way they walk – also known as gait recognition – has been studied extensively in the recent past. Recent gait recognition methods solely focus on data extracted from an RGB video stream. With this work, we provide a means for multimodal gait recognition, by introducing the freely available TUM Gait from Audio, Image and Depth (GAID) database. This database simultaneously contains RGB video, depth and audio. With 305 people in three variations, it is one of the largest to-date. To further investigate challenges of time variation, a subset of 32 people is recorded a second time. We define standardized experimental setups for both person identification and for the assessment of the soft biometrics age, gender, height, and shoe type. For all defined experiments, we present several baseline results on all available modalities. These effectively demonstrate multimodal fusion being beneficial to gait recognition.
Secrets of optical flow estimation and their principles
(2010)

The accuracy of optical flow estimation algorithms has been improving steadily as evidenced by results on the Middlebury optical flow benchmark. The typical formulation, however, has changed little since the work of Horn and Schunck. We attempt to uncover what has made recent advances possible through a thorough analysis of how the objective function, the optimization method, and modern implementation practices influence accuracy. We discover that “classical” flow formulations perform surprisingly well when combined with modern optimization and implementation techniques. Moreover, we find that while median filtering of intermediate flow fields during optimization is a key to recent performance gains, it leads to higher energy solutions. To understand the principles behind this phenomenon, we derive a new objective that formalizes the median filtering heuristic. This objective includes a nonlocal term that robustly integrates flow estimates over large spatial neighborhoods. By modifying this new term to include information about flow and image boundaries we develop a method that ranks at the top of the Middlebury benchmark.
Partial Multi-Modal Sparse Coding via Adaptive Similarity Structure Regularization
(2016)

Multi-modal sparse coding has played an important role in many multimedia applications, where data are usually with multiple modalities. Recently, various multi-modal sparse coding approaches have been proposed to learn sparse codes of multi-modal data, which assume that data appear in all modalities, or at least there is one modality containing all data. However, in real applications, it is often the case that some modalities of the data may suffer from missing information and thus result in partial multi-modality data. In this paper, we propose to solve the partial multi-modal sparse coding problem via multi-modal similarity structure regularization. Specifically, we propose a partial multi-modal sparse coding framework termed Adaptive Partial Multi-Modal Similarity Structure Regularization for Sparse Coding (AdaPM2SC), which preserves the similarity structure within the same modality and between different modalities. Experimental results conducted on two real-world datasets demonstrate that AdaPM2SC significantly outperforms the state-of-the-art methods under partial multi-modality scenario.
The relationship among young adult college students' depression, anxiety, stress, demographics, life satisfaction, and coping styles.
(2012)

Recent research indicates that young adult college students experience increased levels of depression, anxiety, and stress. It is less clear what strategies college health care providers might use to assist students in decreasing these mental health concerns. In this paper, we examine the relative importance of coping style, life satisfaction, and selected demographics in predicting undergraduates' depression, anxiety, and stress. A total of 508 full-time undergraduate students aged 18-24 years completed the study measures and a short demographics information questionnaire. Coping strategies and life satisfaction were assessed using the Brief COPE Inventory and an adapted version of the Brief Students' Multidimensional Life Satisfaction Scale. Depression, anxiety, and stress were measured using the Depression Anxiety and Stress Scale-21 (DASS-21). Multiple regression analyses were used to examine the relative influence of each of the independent variables on depression, anxiety, and stress. Maladaptive coping was the main predictor of depression, anxiety, and stress. Adaptive coping was not a significant predictor of any of the three outcome variables. Reducing maladaptive coping behaviors may have the most positive impact on reducing depression, anxiety, and stress in this population.
Spider: A Large-Scale Human-Labeled Dataset for Complex and Cross-Domain Semantic Parsing and Text-to-SQL Task
(2018)

We present Spider, a large-scale, complex and cross-domain semantic parsing and textto-SQL dataset annotated by 11 college students. It consists of 10,181 questions and 5,693 unique complex SQL queries on 200 databases with multiple tables, covering 138 different domains. We define a new complex and cross-domain semantic parsing and textto-SQL task where different complex SQL queries and databases appear in train and test sets. In this way, the task requires the model to generalize well to both new SQL queries and new database schemas. Spider is distinct from most of the previous semantic parsing tasks because they all use a single database and the exact same programs in the train set and the test set. We experiment with various state-of-the-art models and the best model achieves only 12.4% exact matching accuracy on a database split setting. This shows that Spider presents a strong challenge for future research. Our dataset and task are publicly available at https://yale-lily. github.io/spider.
Particle Swarm Optimization (PSO) for the constrained portfolio optimization problem
(2011)

0957-4174/$ see front matter 2011 Elsevier Ltd. A doi:10.1016/j.eswa.2011.02.075 ⇑ Corresponding author. Tel.: +4773597119. E-mail addresses: hanhong@stud.ntnu.no (H (Y. Wang), Kesheng.wang@ntnu.no (K. Wang), (Y. Chen). One of the most studied problems in the financial investment expert system is the intractability of portfolios. The non-linear constrained portfolio optimization problem with multi-objective functions cannot be efficiently solved using traditionally approaches. This paper presents a meta-heuristic approach to portfolio optimization problem using Particle Swarm Optimization (PSO) technique. The model is tested on various restricted and unrestricted risky investment portfolios and a comparative study with Genetic Algorithms is implemented. The PSO model demonstrates high computational efficiency in constructing optimal risky portfolios. Preliminary results show that the approach is very promising and achieves results comparable or superior with the state of the art solvers. 2011 Elsevier Ltd. All rights reserved.
Inside the Black Box: How to Explain Individual Predictions of a Machine Learning Model : How to automatically generate insights on predictive model outputs, and gain a better understanding on how the model predicts each individual data point.
(2018)

Machine learning models are becoming more and more powerful and accurate, but their good predictions usually come with a high complexity. Depending on the situation, such a lack of interpretability can be an important and blocking issue. This is especially the case when trust is needed on the user side in order to take a decision based on the model prediction. For instance, when an insurance company uses a machine learning algorithm in order to detect fraudsters: the company would trust the model to be based on meaningful variables before actually taking action and investigating on a particular individual. In this thesis, several explanation methods are described and compared on multiple datasets (text data, numerical), on classification and regression problems.
AI Methods in Algorithmic Composition: A Comprehensive Survey
(2013)

Algorithmic composition is the partial or total automation of the process of music composition by using computers. Since the 1950s, different computational techniques related to Artificial Intelligence have been used for algorithmic composition, including grammatical representations, probabilistic methods, neural networks, symbolic rule-based systems, constraint programming and evolutionary algorithms. This survey aims to be a comprehensive account of research on algorithmic composition, presenting a thorough view of the field for researchers in Artificial Intelligence.
Tactile information transmission by apparent movement phenomenon using shape-memory alloy device
(2006)

This paper introduces the development of a tactile device using a shape-memory alloy, and describes the information transmission by the higher psychological perception such as the phantom sensation and the apparent movement of the tactility. The authors paid attention to the characteristic of a shape-memory alloy formed into a thread, which changes its length according to its body temperature, and developed a vibration-generating actuator electrically driven by periodic signals generated by current control circuits, for the tactile information transmission. The size of the actuator is quite compact and the energy consumption is only 20mW. By coupling the actuators as a pair, an information transmission system was constructed for presenting the apparent movement of the tactility, to transmit quite novel sensation to a user. Based on the preliminary experiment, the parameters for the tactile information transmission were examined. Then the information transmission by the device was tested by 10 subjects, and evaluated by questionnaires. The apparent movement was especially well perceived by users as a sensation of a small object running on the skin surface or as being tapped by something, according to the well-determined signals given to the actuators. Several users reported that they perceived a novel rubbing sensation given by the AM, and we further experimented the presentation of the sensation in detail to be used as a sensory-aids tactile display for the handicapped and elderly people.