SoroushVahidi/scidocs huggingface dataset:
Anticipatory affect: neural correlates and consequences for choice.
(2008)

'Anticipatory affect' refers to emotional states that people experience while anticipating significant outcomes. Historically, technical limitations have made it difficult to determine whether anticipatory affect influences subsequent choice. Recent advances in the spatio-temporal resolution of functional magnetic resonance imaging, however, now allow researchers to visualize changes in neural activity seconds before choice occurs. We review evidence that activation in specific brain circuits changes during anticipation of monetary incentives, that this activation correlates with affective experience and that activity in these circuits may influence subsequent choice. Specifically, an activation likelihood estimate meta-analysis of cued response studies indicates that nucleus accumbens (NAcc) activation increases during gain anticipation relative to loss anticipation, while anterior insula activation increases during both loss and gain anticipation. Additionally, anticipatory NAcc activation correlates with self-reported positive arousal, whereas anterior insula activation correlates with both self-reported negative and positive arousal. Finally, NAcc activation precedes the purchase of desirable products and choice of high-risk gambles, whereas anterior insula activation precedes the rejection of overpriced products and choice of low-risk gambles. Together, these findings support a neurally plausible framework for understanding how anticipatory affect can influence choice.
Ernest: Efficient Performance Prediction for Large-Scale Advanced Analytics
(2016)

Recent workload trends indicate rapid growth in the deployment of machine learning, genomics and scientific workloads on cloud computing infrastructure. However, efficiently running these applications on shared infrastructure is challenging and we find that choosing the right hardware configuration can significantly improve performance and cost. The key to address the above challenge is having the ability to predict performance of applications under various resource configurations so that we can automatically choose the optimal configuration. Our insight is that a number of jobs have predictable structure in terms of computation and communication. Thus we can build performance models based on the behavior of the job on small samples of data and then predict its performance on larger datasets and cluster sizes. To minimize the time and resources spent in building a model, we use optimal experiment design, a statistical technique that allows us to collect as few training points as required. We have built Ernest, a performance prediction framework for large scale analytics and our evaluation on Amazon EC2 using several workloads shows that our prediction error is low while having a training overhead of less than 5% for long-running jobs.
Bootstrapping the Linked Data Web
(2011)

Most knowledge sources on the Data Web were extracted from structured or semi-structured data. Thus, they encompass solely a small fraction of the information available on the document-oriented Web. In this paper, we present BOA, an iterative bootstrapping strategy for extracting RDF from unstructured data. The idea behind BOA is to use the Data Web as background knowledge for the extraction of natural language patterns that represent predicates found on the Data Web. These patterns are used to extract instance knowledge from natural language text. This knowledge is nally fed back into the Data Web, therewith closing the loop. We evaluate our approach on two data sets using DBpedia as background knowledge. Our results show that we can extract several thousand new facts in one iteration with very high accuracy. Moreover, we provide the rst repository of natural language representations of predicates found on the Data Web.
Combined Spectral and Spatial Modeling of Corn Yield Based on Aerial Images and Crop Surface Models Acquired with an Unmanned Aircraft System
(2014)

Precision Farming (PF) management strategies are commonly based on estimations of within-field yield potential, often derived from remotely-sensed products, e.g., Vegetation Index (VI) maps. These well-established means, however, lack important information, like crop height. Combinations of VI-maps and detailed 3D Crop Surface Models (CSMs) enable advanced methods for crop yield prediction. This work utilizes an Unmanned Aircraft System (UAS) to capture standard RGB imagery datasets for corn grain yield prediction at three earlyto mid-season growth stages. The imagery is processed into simple VI-orthoimages for crop/non-crop classification and 3D CSMs for crop height determination at different spatial resolutions. Three linear regression models are tested on their prediction ability using site-specific (i) unclassified mean heights, (ii) crop-classified mean heights and (iii) a combination of crop-classified mean heights with according crop coverages. The models show determination coefficients R of up to 0.74, whereas model (iii) performs best with imagery captured at the end of stem elongation and intermediate spatial resolution (0.04 m·px−1). Following these results, combined spectral and spatial modeling, based on aerial images and CSMs, proves to be a suitable method for mid-season corn yield prediction. Remote Sens. 2014, 11 10336
You are what you eat? Vegetarianism, health and identity.
(2008)

This paper examines the views of 'health vegetarians' through a qualitative study of an online vegetarian message board. The researcher participated in discussions on the board, gathered responses to questions from 33 participants, and conducted follow-up e-mail interviews with 18 of these participants. Respondents were predominantly from the United States, Canada and the UK. Seventy per cent were female, and ages ranged from 14 to 53 years, with a median of 26 years. These data are interrogated within a theoretical framework that asks, 'what can a vegetarian body do?' and explores the physical, psychic, social and conceptual relations of participants. This provides insights into the identities of participants, and how diet and identity interact. It is concluded that vegetarianism is both a diet and a bodily practice with consequences for identity formation and stabilisation.
Digital Material Fabrication Using Mask-Image-Projection-based Stereolithography
(2012)

Purpose – The purpose of this paper is to present a mask-image-projection-based Stereolithography process that can combine two base materials with various concentrations and structures to produce a solid object with desired material characteristics. Stereolithography is an additive manufacturing process in which liquid photopolymer resin is cross-linked and converted to solid. The fabrication of digital material requires frequent resin changes during the building process. The process presented in this paper attempts to address the related challenges in achieving such fabrication capability. Design/methodology/approach – A two-channel system design is presented for the multi-material mask-imageprojection-based Stereolithography process. In such a design, a coated thick film and linear motions in two axes are used to reduce the separation force of a cured layer. The material cleaning approach to thoroughly remove resin residue on built surfaces is presented for the developed process. Based on a developed testbed, experimental studies were conducted to verify the effectiveness of the presented process on digital material fabrication. Findings – The proposed two-channel system can reduce the separation force of a cured layer by an order of magnitude in the bottom-up projection system. The developed two-stage cleaning approach can effectively remove resin residue on built surfaces. Several multi-material designs have been fabricated to highlight the capability of the developed multi-material mask-image-projection-based Stereolithography process. Research limitations/implications – A proof-of-concept testbed has been developed. Its building speed and accuracy can be further improved. Our tests were limited to the same type of liquid resins. In addition, the removal of trapped air is a challenge in the presented process. Originality/value – This paper presents a novel and a pioneering approach towards digital material fabrication based on the Stereolithography process. This research contributes to the additive manufacturing development by significantly expanding the selection of base materials in fabricating solid objects with desired material characteristics.
Calibrating Large-area Mask Projection Stereolithography for Its Accuracy and Resolution Improvements
(2009)

Solid freeform fabrication (SFF) processes based on mask image projection such as digital micro-mirror devices (DMD) have the potential to be fast and inexpensive. More and more research and commercial systems have been developed based on such digital devices. However, a digital light processing (DLP) projector based on DMD has limited resolution and certain image blurring. In order to use a DLP projector in the large-area mask projection stereolithography, it is critical to plan mask images in order to achieve high accuracy and resolution. Based on our previous work on optimized pixel blending, we present a calibration method for capturing the non-uniformity of a projection image by a low cost off-the-shelf DLP projector. Our method is based on two calibration systems, a geometric calibration system that can calibrate the position, shape, size, and orientation of a pixel and an energy calibration system that can calibrate the light intensity of a pixel. Based on both results, the light intensity at various grayscale levels can be approximated for each pixel. Developing a library of such approximation functions is critical for the optimized pixel blending to generate a better mask image plan. Experimental results verify our calibration results.
Projection micro-stereolithography using digital micro-mirror dynamic mask
(2005)

We present in this paper the development of a high-resolution projection micro-stereolithography (P SL) process by using the Digital Micromirror Device (DMDTM, Texas Instruments) as a dynamic mask. This unique technology provides a parallel fabrication of complex three-dimensional (3D) microstructures used for micro electro-mechanical systems (MEMS). Based on the understanding of underlying mechanisms, a process model has been developed with all critical parameters obtained from the experimental measurement. By coupling the experimental measurement and the process model, the photon-induced curing behavior of the resin has been quantitatively studied. The role o erty of the r n d ©
A Layerless Additive Manufacturing Process based on CNC Accumulation
(2010)

Most current additive manufacturing processes are layer-based, that is building a physical model layer-by-layer. By converting 3-dimensional geometry into 2-dimensional contours, the layer-based approach can dramatically simplify the process planning steps. However, there are also drawbacks associated with the layer-based approach such as inconsistent material properties between various directions. In a recent NSF workshop on additive manufacturing, it is suggested to investigate alternative non-layer based approaches. In this paper, we present an additive manufacturing process without planar layers. In the developed testbed, an additive tool based on a fiber optics cable and a UV-LED has been developed. By merging such tools inside a liquid resin tank, we demonstrate its capability of building various 2D and 3D structures. The technical challenges related to the development of such a process are discussed. Some potential applications including part repairing and building around inserts have also been demonstrated.
Single‐cell sequencing maps gene expression to mutational phylogenies in PDGF‐ and EGF‐driven gliomas
(2016)

Glioblastoma multiforme (GBM) is the most common and aggressive type of primary brain tumor. Epidermal growth factor (EGF) and platelet-derived growth factor (PDGF) receptors are frequently amplified and/or possess gain-of-function mutations in GBM However, clinical trials of tyrosine-kinase inhibitors have shown disappointing efficacy, in part due to intra-tumor heterogeneity. To assess the effect of clonal heterogeneity on gene expression, we derived an approach to map single-cell expression profiles to sequentially acquired mutations identified from exome sequencing. Using 288 single cells, we constructed high-resolution phylogenies of EGF-driven and PDGF-driven GBMs, modeling transcriptional kinetics during tumor evolution. Descending the phylogenetic tree of a PDGF-driven tumor corresponded to a progressive induction of an oligodendrocyte progenitor-like cell type, expressing pro-angiogenic factors. In contrast, phylogenetic analysis of an EGFR-amplified tumor showed an up-regulation of pro-invasive genes. An in-frame deletion in a specific dimerization domain of PDGF receptor correlates with an up-regulation of growth pathways in a proneural GBM and enhances proliferation when ectopically expressed in glioma cell lines. In-frame deletions in this domain are frequent in public GBM data.
A very-high output impedance current mirror for very-low voltage biomedical analog circuits
(2008)

In this paper, we present the design of a new very-high output impedance CMOS current mirror with enhanced output voltage compliance. The proposed current mirror uses MOS current dividers to sample the output current and a feedback action is used to force it to be equal to the input current; yielding very high impedance with a very large output voltage range. The proposed implementation yields an increase of the output impedance by a factor of about gmro compared with that of the super-Wilson current mirror, thus offering a potential solution to mitigate the effect of the low output impedance of ultra-deep submicron CMOS transistors used in sub 1-V current mirrors and current sources. A NMOS version of the proposed current mirror circuit was implemented using STMicroelectronics 1-V 90-nm CMOS process and simulated using Spectre to validate its performance. The output current is mirrored with a transfer error lower than 1% down to an output voltage as low as 80 mV for an input current of 5 muA, and 111 mV when the input current is increased to 50 muA.
Dune: Safe User-level Access to Privileged CPU Features
(2012)

Dune is a system that provides applications with direct but safe access to hardware features such as ring protection, page tables, and tagged TLBs, while preserving the existing OS interfaces for processes. Dune uses the virtualization hardware in modern processors to provide a process, rather than a machine abstraction. It consists of a small kernel module that initializes virtualization hardware and mediates interactions with the kernel, and a user-level library that helps applications manage privileged hardware features. We present the implementation of Dune for 64bit x86 Linux. We use Dune to implement three userlevel applications that can benefit from access to privileged hardware: a sandbox for untrusted code, a privilege separation facility, and a garbage collector. The use of Dune greatly simplifies the implementation of these applications and provides significant performance advantages.
Applications of approximation algorithms to cooperative games
(2001)

The Internet, which is intrinsically a common playground for a large number of players with varying degrees of collaborative and sel sh motives, naturally gives rise to numerous new game theoretic issues. Computational problems underlying solutions to these issues, achieving desirable economic criteria, often turn out to be NP-hard. It is therefore natural to apply notions from the area of approximation algorithms to these problems. The connection is made more meaningful by the fact that the two areas of game theory and approximation algorithms share common methodology { both heavily use machinery from the theory of linear programming. Various aspects of this connection have been explored recently by researchers [8, 10, 15, 20, 21, 26, 27, 29]. In this paper we will consider the problem of sharing the cost of a jointly utilized facility in a \fair" manner. Consider a service providing company whose set of possible customers, also called users, is U . For each set S U C(S) denotes the cost incurred by the company to serve the users in S. The function C is known as the cost function. For concreteness, assume that the company broadcasts news of common interest, such as nancial news, on the net. Each user, i, has a utility, u0i, for receiving the news. This utility u 0 i is known only to user i. User i enjoys a bene t of u0i xi if she gets the news at the price xi. If she does not get the news then her bene t is 0. Each user is assumed to be sel sh, and hence in order to maximize bene t, may misreport her utility as some other number, say ui. For the rest of the discussion, the utility of user i will mean the number ui. A cost sharing mechanism determines which users receive the broadcast and at what price. The mechanism is strategyproof if the dominant strategy of each user is to reveal the
Automatic generation of destination maps
(2010)

Destination maps are navigational aids designed to show anyone within a region how to reach a location (the destination). Hand-designed destination maps include only the most important roads in the region and are non-uniformly scaled to ensure that all of the important roads from the highways to the residential streets are visible. We present the first automated system for creating such destination maps based on the design principles used by mapmakers. Our system includes novel algorithms for selecting the important roads based on mental representations of road networks, and for laying out the roads based on a non-linear optimization procedure. The final layouts are labeled and rendered in a variety of styles ranging from informal to more formal map styles. The system has been used to generate over 57,000 destination maps by thousands of users. We report feedback from both a formal and informal user study, as well as provide quantitative measures of success.
Aspect Extraction with Automated Prior Knowledge Learning
(2014)

Aspect extraction is an important task in sentiment analysis. Topic modeling is a popular method for the task. However, unsupervised topic models often generate incoherent aspects. To address the issue, several knowledge-based models have been proposed to incorporate prior knowledge provided by the user to guide modeling. In this paper, we take a major step forward and show that in the big data era, without any user input, it is possible to learn prior knowledge automatically from a large amount of review data available on the Web. Such knowledge can then be used by a topic model to discover more coherent aspects. There are two key challenges: (1) learning quality knowledge from reviews of diverse domains, and (2) making the model fault-tolerant to handle possibly wrong knowledge. A novel approach is proposed to solve these problems. Experimental results using reviews from 36 domains show that the proposed approach achieves significant improvements over state-of-the-art baselines.
Application Protocols and Wireless Communication for IoT: A Simulation Case Study Proposal
(2018)

The current Internet of Things (IoT) solutions require support at different network layers, from higher level applications to lower level media-based support. This paper presents some of the main application requirements for IoT, characterizing architecture, Quality of Service (QoS) features, security mechanisms, discovery service resources and web integration options and the protocols that can be used to provide them (e.g. CoAP, XMPP, DDS, MQTT-SN, AMQP). As examples of lower-level requirements and protocols, several wireless network characteristics (e.g. ZigBee, Z-Wave, BLE, LoRaWAN, SigFox, IEEE 802.11af, NB-IoT) are presented. The variety of possible applications scenarios and the heterogeneity of enabling technologies combined with a large number of sensors and devices, suggests the need for simulation and modeling tactics to describe how the previous requirements can be met. As a potential solution, the creation of simulation models and the usage of the OMNET++ simulation tool to enable meaningful IoT simulation is discussed. The analysis of the behavior of IoT applications is proposed for two use cases: Wireless Sensor Networks (WSN) for home and industrial automation, and Low Power Wide Area (LPWA) networks for smart meters, smart buildings, and smart cities.
Integrating Surface and Abstract Features for Robust Cross-Domain Chinese Word Segmentation
(2012)

Current character-based approaches are not robust for cross domain Chin ese word segmentation. In this paper, we alleviate this problem by deriving a novel enhanced ch aracterbased generative model with a new abstract aggregate candidate-feature, which indicates if th given candidate prefers the corresponding position-tag of the longest dictionary matching wo rd. Since the distribution of the proposed feature is invariant across domains, our m del thus possesses better generalization ability. Open tests on CIPS-SIGHAN-2010 show that the enhance d gen rative model achieves robust cross-domain performance for various OOV cov erage rates and obtains the best performance on three out of four domains. The enhanced gen erative model is then further integrated with a discriminative model which also utilizes dictionary information . This integrated model is shown to be either superior or comparable to all other models repo rted in the literatur e on every domain of this task.
Neural Networks and Graph Algorithms with Next-Generation Processors
(2018)

The use of graphical processors for distributed computation revolutionized the field of high performance scientific computing. As the Moore's Law era of computing draws to a close, the development of non-Von Neumann systems: neuromorphic processing units, and quantum annealers; again are redefining new territory for computational methods. While these technologies are still in their nascent stages, we discuss their potential to advance computing in two domains: machine learning, and solving constraint satisfaction problems. Each of these processors utilize fundamentally different theoretical models of computation. This raises questions about how to best use them in the design and implementation of applications. While many processors are being developed with a specific domain target, the ubiquity of spin-glass models and neural networks provides an avenue for multi-functional applications. This provides hints at the future infrastructure needed to integrate many next-generation processing units into conventional high-performance computing systems.