SoroushVahidi/scidocs huggingface dataset:
Effects of coffee on ambulatory blood pressure in older men and women: A randomized controlled trial.
(1999)

This study assessed the effects of regular coffee drinking on 24-hour ambulatory blood pressure (ABP) in normotensive and hypertensive older men and women. Twenty-two normotensive and 26 hypertensive, nonsmoking men and women, with a mean age of 72.1 years (range, 54 to 89 years), took part in the study. After 2 weeks of a caffeine-free diet, subjects were randomized to continue with the caffeine-free diet and abstain from caffeine-containing drinks or drink instant coffee (5 cups per day, equivalent to 300 mg caffeine per day) in addition to the caffeine-free diet for a further 2 weeks. Change in systolic and diastolic blood pressures (SBP, DBP) determined by 24-hour ambulatory BP monitoring showed significant interactions between coffee drinking and hypertension status. In the hypertensive group, rise in mean 24-hour SBP was greater by 4.8 (SEM, 1.3) mm Hg (P=0.031) and increase in mean 24-hour DBP was higher by 3.0 (1.0) mm Hg (P=0.010) in coffee drinkers than in abstainers. There were no significant differences between abstainers and coffee drinkers in the normotensive group for 24-hour, daytime, or nighttime SBP or DBP. In older men and women with treated or untreated hypertension, ABP increased in coffee drinkers and decreased in abstainers. Restriction of coffee intake may be beneficial in older hypertensive individuals.
Efficient region search for object detection
(2011)

We propose a branch-and-cut strategy for efficient region-based object detection. Given an oversegmented image, our method determines the subset of spatially contiguous regions whose collective features will maximize a classifier's score. We formulate the objective as an instance of the prize-collecting Steiner tree problem, and show that for a family of additive classifiers this enables fast search for the optimal object region via a branch-and-cut algorithm. Unlike existing branch-and-bounddetection methods designed for bounding boxes, our approach allows scoring of irregular shapes — which is especially critical for objects that do not conform to a rectangular window. We provide results on three challenging object detection datasets, and demonstrate the advantage of rapidly seeking best-scoring regions rather than subwindow rectangles.
Reproducible Experiments for Comparing Apache Flink and Apache Spark on Public Clouds
(2016)

Big data processing is a hot topic in today’s computer science world. There is a significant demand for analysing big data to satisfy many requirements of many industries. Emergence of the Kappa architecture created a strong requirement for a highly capable and efficient data processing engine. Therefore data processing engines such as Apache Flink and Apache Spark emerged in open source world to fulfill that efficient and high performing data processing requirement. There are many available benchmarks to evaluate those two data processing engines. But complex deployment patterns and dependencies make those benchmarks very difficult to reproduce by our own. This project has two main goals. They are making few of community accepted benchmarks easily reproducible on cloud and validate the performance claimed by those studies. Keywords– Data Processing, Apache Flink, Apache Spark, Batch processing, Stream processing, Reproducible experiments, Cloud
>1.3-Tb/s VCSEL-Based On-Board Parallel-Optical Transceiver Module for High-Density Optical Interconnects
(2018)

This paper gives a detailed description of a >1.3-Tb/s VCSEL-based on-board parallel-optical transceiver module for high-density optical interconnects. The optical module integrates a 28-Gb/s × 24-channel transmitter and receiver into one package with a 1-in2 footprint, thereby yielding a data rate density as high as 1.34 Tb/s/in2. A unique module design is developed to utilize the whole top surface for thermal dissipation and the bottom surface for optical and electrical interfaces. The heat dissipation characteristics are studied in simulations and experiments. A test system of 24-channel optical loop-back link is built to evaluate the performance when operating all 24 channels by 28.05-Gb/s 231–1 PRBS bit streams simultaneously. With a total power consumption of 9.1 W, the optical module can be operated within the operating case temperature under a practical air cooling condition. When operating all 24 channels simultaneously, a total jitter margin at BER of 10–12 is larger than 0.4 U.I. at a monitor channel. The measured jitter margin is consistent regardless of any channel operation.
Random projection-based multiplicative data perturbation for privacy preserving distributed data mining
(2006)

This paper explores the possibility of using multiplicative random projection matrices for privacy preserving distributed data mining. It specifically considers the problem of computing statistical aggregates like the inner product matrix, correlation coefficient matrix, and Euclidean distance matrix from distributed privacy sensitive data possibly owned by multiple parties. This class of problems is directly related to many other data-mining problems such as clustering, principal component analysis, and classification. This paper makes primary contributions on two different grounds. First, it explores independent component analysis as a possible tool for breaching privacy in deterministic multiplicative perturbation-based models such as random orthogonal transformation and random rotation. Then, it proposes an approximate random projection-based technique to improve the level of privacy protection while still preserving certain statistical characteristics of the data. The paper presents extensive theoretical analysis and experimental results. Experiments demonstrate that the proposed technique is effective and can be successfully used for different types of privacy-preserving data mining applications.
Anusaaraka: Machine Translation in Stages
(2003)

Fully-automatic general-purpose high-quality machine translation systems (FGH-MT) are extremely difficult to build. In fact, there is no system in the world for any pair of languages which qualifies to be called FGH-MT. The reasons are not far to seek. Translation is a creative process which involves interpretation of the given text by the translator. Translation would also vary depending on the audience and the purpose for which it is meant. This would explain the difficulty of building a machine translation system. Since, the machine is not capable of interpreting a general text with sufficient accuracy automatically at present let alone re-expressing it for a given audience, it fails to perform as FGH-MT. FOOTNOTE{The major difficulty that the machine facesin interpreting a given text is the lack of general world knowledge or common sense knowledge.}
LEARNING USING A SIAMESE CONVOLUTIONAL NEURAL NETWORK
(2016)

In this paper we describe learning of a descriptor based on the Siamese Convolutional Neural Network (CNN) architecture and evaluate our results on a standard patch comparison dataset. The descriptor learning architecture is composed of an input module, a Siamese CNN descriptor module and a cost computation module that is based on the L2 Norm. The cost function we use pulls the descriptors of matching patches close to each other in feature space while pushing the descriptors for non-matching pairs away from each other. Compared to related work, we optimize the training parameters by combining a moving average strategy for gradients and Nesterov's Accelerated Gradient. Experiments show that our learned descriptor reaches a good performance and achieves stateof-art results in terms of the false positive rate at a 95% recall rate on standard benchmark datasets. * Corresponding author
Wearable/disposable sweat-based glucose monitoring device with multistage transdermal drug delivery module
(2017)

Electrochemical analysis of sweat using soft bioelectronics on human skin provides a new route for noninvasive glucose monitoring without painful blood collection. However, sweat-based glucose sensing still faces many challenges, such as difficulty in sweat collection, activity variation of glucose oxidase due to lactic acid secretion and ambient temperature changes, and delamination of the enzyme when exposed to mechanical friction and skin deformation. Precise point-of-care therapy in response to the measured glucose levels is still very challenging. We present a wearable/disposable sweat-based glucose monitoring device integrated with a feedback transdermal drug delivery module. Careful multilayer patch design and miniaturization of sensors increase the efficiency of the sweat collection and sensing process. Multimodal glucose sensing, as well as its real-time correction based on pH, temperature, and humidity measurements, maximizes the accuracy of the sensing. The minimal layout design of the same sensors also enables a strip-type disposable device. Drugs for the feedback transdermal therapy are loaded on two different temperature-responsive phase change nanoparticles. These nanoparticles are embedded in hyaluronic acid hydrogel microneedles, which are additionally coated with phase change materials. This enables multistage, spatially patterned, and precisely controlled drug release in response to the patient’s glucose level. The system provides a novel closed-loop solution for the noninvasive sweat-based management of diabetes mellitus.
Generalized neural-network representation of high-dimensional potential-energy surfaces.
(2007)

The accurate description of chemical processes often requires the use of computationally demanding methods like density-functional theory (DFT), making long simulations of large systems unfeasible. In this Letter we introduce a new kind of neural-network representation of DFT potential-energy surfaces, which provides the energy and forces as a function of all atomic positions in systems of arbitrary size and is several orders of magnitude faster than DFT. The high accuracy of the method is demonstrated for bulk silicon and compared with empirical potentials and DFT. The method is general and can be applied to all types of periodic and nonperiodic systems.
A universal SNP and small-indel variant caller using deep neural networks
(2018)

Despite rapid advances in sequencing technologies, accurately calling genetic variants present in an individual genome from billions of short, errorful sequence reads remains challenging. Here we show that a deep convolutional neural network can call genetic variation in aligned next-generation sequencing read data by learning statistical relationships between images of read pileups around putative variant and true genotype calls. The approach, called DeepVariant, outperforms existing state-of-the-art tools. The learned model generalizes across genome builds and mammalian species, allowing nonhuman sequencing projects to benefit from the wealth of human ground-truth data. We further show that DeepVariant can learn to call variants in a variety of sequencing technologies and experimental designs, including deep whole genomes from 10X Genomics and Ion Ampliseq exomes, highlighting the benefits of using more automated and generalizable techniques for variant calling.
Risk Management for Service-Oriented Systems
(2007)

Web service technology can be used for integrating heterogeneous and autonomous applications into cross-organizational systems. A key problem is to support a high quality of service-oriented systems despite vulnerabilities caused by the use of external web services. One important aspect that has received little attention so far is risk management for such systems. This paper discusses risks peculiar for servicebased systems, their impact and ways of mitigation. In the context of service-oriented design, risks can be reduced by selection of appropriate business partners, web service discovery, service composition and Quality of Service (QoS) management. Advisors. Vincenzo D’Andrea.
A Questionnaire Approach based on the Technology Acceptance Model for Mobile tracking on Patient progress Applications
(2013)

Healthcare professionals spend much of their time wandering between patients and offices, while the supportive technology stays stationary. Therefore, mobile applications has adapted for healthcare industry. In spite of the advancement and variety of available mobile based applications, there is an eminent need to investigate the current position of the acceptance of those mobile health applications that are tailored towards the tracking patients condition, share patients information and access. Consequently, in this study Technology Acceptance Model has designed to investigate the user acceptance of mobile technology application within healthcare industry. The purpose of this study is to design a quantitative approach based on the technology acceptance model questionnaire as its primary research methodology. It utilized a quantitative approach based a Technology Acceptance Model (TAM) to evaluate the system mobile tracking Model. The related constructs for evaluation are: Perceived of Usefulness, Perceived Ease of Use, User Satisfaction and Attribute of Usability. All these constructs are modified to suit the context of the study. Moreover, this study outlines the details of each construct and its relevance toward the research issue. The outcome of the study represents series of approaches that will apply for checking the suitability of a mobile tracking on patient progress application for health care industry and how well it achieves the aims and objectives of the design.
Propulsion Drive Models for Full Electric Marine Propulsion Systems
(2007)

Integrated full electric propulsion systems are being introduced across both civil and military marine sectors. Standard power systems analysis packages cover electrical and electromagnetic components, but have limited models of mechanical subsystems and their controllers. Hence electromechanical system interactions between the prime movers, power network and driven loads are poorly understood. This paper reviews available models of the propulsion drive system components: the power converter, motor, propeller and ship. Due to the wide range of time-constants in the system, reduced order models of the power converter are required. A new model using state-averaged models of the inverter and a hybrid model of the rectifier is developed to give an effective solution combining accuracy with speed of simulation and an appropriate interface to the electrical network model. Simulation results for a typical ship manoeuvre are presented.
Cooperative (rather than autonomous) vehicle-highway automation systems
(2009)

The recent DARPA-sponsored automated vehicle "Challenges" have generated strong interest in both the research community and the general public, raising consciousness about the possibilities for vehicle automation. Driverless vehicles make good subjects for the visually-oriented media, and they pose enough interesting research challenges to occupy generations of graduate students. However, automated vehicles also have the potential to help solve a variety of real-world problems. Engineers need to think carefully about which of those problems we are actually solving.A well-engineered system should be designed to satisfy specific needs, and those needs should be reflected in the definition of system requirements. Alternative technological approaches can then be evaluated and traded off based on their ability to meet the requirements. The article describes the rather different needs of the public road transportation system and the military transportation system, and then shows how those needs influence the requirements for automated vehicle systems. These requirements point toward significantly different technical approaches, but it is possible to find some limited areas of technical commonality.
Transcending transmedia: emerging story telling structures for the emerging convergence platforms
(2012)

Although the current paradigm for expanded participatory storytellling is the "transmedia" exploitation of the same storyworld on multiple platforms, it can be more productive to think of the digital medium as a single platform, combining all the functionalities we now associate with networked computers, game consoles, and conventionally delivered episodic television to enhance the traditional strengths and cultural functions of television. By looking at the how the four affordances of the digital medium the procedural, participatory, encyclopedic, and spatial apply to three core characteristics of television moving images, sustained storytelling, and individual viewing in the presence of a mass audience -- we can identify areas of emerging conventions and widening opportunity for design innovation
A generic visual perception domain randomisation framework for Gazebo
(2018)

The impressive results of applying deep neural networks in tasks such as object recognition, language translation, and solving digital games are largely attributed to the availability of massive amounts of high quality labelled data. However, despite numerous promising steps in incorporating these techniques in robotic tasks, the cost of gathering data with a real robot has halted the proliferation of deep learning in robotics. In this work, a plugin for the Gazebo simulator is presented, which allows rapid generation of synthetic data. By introducing variations in simulator-specific or irrelevant aspects of a task, one can train a model which exhibits some degree of robustness against those aspects, and ultimately narrow the reality gap between simulated and real-world data. To show a use-case of the developed software, we build a new dataset for detection and localisation of three object classes: box, cylinder and sphere. Our results in the object detection and localisation task demonstrate that with small datasets generated only in simulation, one can achieve comparable performance to that achieved when training on real-world images.
Fast single image fog removal using the adaptive Wiener filter
(2013)

We present in this paper a fast single image defogging method that uses a novel approach to refining the estimate of amount of fog in an image with the Locally Adaptive Wiener Filter. We provide a solution for estimating noise parameters for the filter when the observation and noise are correlated by decorrelating with a naively estimated defogged image. We demonstrate our method is 50 to 100 times faster than existing fast single image defogging methods and that our proposed method subjectively performs as well as the Spectral Matting smoothed Dark Channel Prior method.
Probability Risk Identification Based Intrusion Detection System for SCADA Systems
(2017)

As Supervisory Control and Data Acquisition (SCADA) systems control several critical infrastructures, they have connected to the internet. Consequently, SCADA systems face different sophisticated types of cyber adversaries. This paper suggests a Probability Risk Identification based Intrusion Detection System (PRI-IDS) technique based on analysing network traffic of Modbus TCP/IP for identifying replay attacks. It is acknowledged that Modbus TCP is usually vulnerable due to its unauthenticated and unencrypted nature. Our technique is evaluated using a simulation environment by configuring a testbed, which is a custom SCADA network that is cheap, accurate and scalable. The testbed is exploited when testing the IDS by sending individual packets from an attacker located on the same LAN as the Modbus master and slave. The experimental results demonstrated that the proposed technique can effectively and efficiently recognise replay attacks.
An Implementation of Intrusion Detection System Using Genetic Algorithm
(2012)

Nowadays it is very important to maintain a high level security to ensure safe and trusted communication of information between various organizations. But secured data communication over internet and any other network is always under threat of intrusions and misuses. So Intrusion Detection Systems have become a needful component in terms of computer and network security. There are various approaches being utilized in intrusion detections, but unfortunately any of the systems so far is not completely flawless. So, the quest of betterment continues. In this progression, here we present an Intrusion Detection System (IDS), by applying genetic algorithm (GA) to efficiently detect various types of network intrusions. Parameters and evolution processes for GA are discussed in details and implemented. This approach uses evolution theory to information evolution in order to filter the traffic data and thus reduce the complexity. To implement and measure the performance of our system we used the KDD99 benchmark dataset and obtained reasonable detection rate.
Model-Agnostic Interpretability of Machine Learning
(2016)

Understanding why machine learning models behave the way they do empowers both system designers and end-users in many ways: in model selection, feature engineering, in order to trust and act upon the predictions, and in more intuitive user interfaces. Thus, interpretability has become a vital concern in machine learning, and work in the area of interpretable models has found renewed interest. In some applications, such models are as accurate as non-interpretable ones, and thus are preferred for their transparency. Even when they are not accurate, they may still be preferred when interpretability is of paramount importance. However, restricting machine learning to interpretable models is often a severe limitation. In this paper we argue for explaining machine learning predictions using model-agnostic approaches. By treating the machine learning models as blackbox functions, these approaches provide crucial flexibility in the choice of models, explanations, and representations, improving debugging, comparison, and interfaces for a variety of users and models. We also outline the main challenges for such methods, and review a recently-introduced model-agnostic explanation approach (LIME) that addresses these challenges.
Safety Verification of Deep Neural Networks
(2017)

Deep neural networks have achieved impressive experimental results in image classification, but can surprisingly be unstable with respect to adversarial perturbations, that is, minimal changes to the input image that cause the network to misclassify it. With potential applications including perception modules and end-to-end controllers for self-driving cars, this raises concerns about their safety. We develop a novel automated verification framework for feed-forward multi-layer neural networks based on Satisfiability Modulo Theory (SMT). We focus on image manipulations, such as scratches or changes to camera angle or lighting conditions, and define safety for an image classification decision in terms of invariance of the classification with respect to manipulations of the original image within a region of images that are close to it. We enable exhaustive search of the region by employing discretisation, and propagate the analysis layer by layer. Our method works directly with the network code and, in contrast to existing methods, can guarantee that adversarial examples, if they exist, are found for the given region and family of manipulations. If found, adversarial examples can be shown to human testers and/or used to fine-tune the network. We implement the techniques using Z3 and evaluate them on state-of-the-art networks, including regularised and deep learning networks. We also compare against existing techniques to search for adversarial examples and estimate network robustness.