SoroushVahidi/scidocs huggingface dataset:
RPA Antagonizes Microhomology-Mediated Repair of DNA Double-Strand Breaks
(2014)

Microhomology-mediated end joining (MMEJ) is a Ku- and ligase IV–independent mechanism for the repair of DNA double-strand breaks that contributes to chromosome rearrangements. Here we used a chromosomal end-joining assay to determine the genetic requirements for MMEJ in Saccharomyces cerevisiae. We found that end resection influences the ability to expose microhomologies; however, it is not rate limiting for MMEJ in wild-type cells. The frequency of MMEJ increased by up to 350-fold in rfa1 hypomorphic mutants, suggesting that replication protein A (RPA) bound to the single-stranded DNA (ssDNA) overhangs formed by resection prevents spontaneous annealing between microhomologies. In vitro, the mutant RPA complexes were unable to fully extend ssDNA and were compromised in their ability to prevent spontaneous annealing. We propose that the helix-destabilizing activity of RPA channels ssDNA intermediates from mutagenic MMEJ to error-free homologous recombination, thus preserving genome integrity.
A New Distance-weighted k-nearest Neighbor Classifier
(2012)

In this paper, we develop a novel Distance-weighted k -nearest Neighbor rule (DWKNN), using the dual distance-weighted function. The proposed DWKNN is motivated by the sensitivity problem of the selection of the neighborhood size k that exists in k -nearest Neighbor rule (KNN), with the aim of improving classification performance. The experiment results on twelve real data sets demonstrate that our proposed classifier is robust to different choices of k to some degree, and yields good performance with a larger optimal k, compared to the other state-of-art KNN-based methods.
Active Learning in Multi-objective Evolutionary Algorithms for Sustainable Building Design
(2016)

Residential and commercial buildings are responsible for about 40% of primary energy consumption in the US. The design of a building has tremendous effect on its energy profile, and recently there has been an increased interest in developing optimization methods that support the design of high performance buildings. Previous approaches are either based on simulation optimization or on training an accurate predictive model to replace expensive energy simulations during the optimization. We propose a method, suitable for expensive multiobjective optimization in very large search spaces. In particular, we use a Gaussian Process (GP) model for the prediction and devise an active learning scheme in a multi-objective genetic algorithm to preferentially simulate only solutions that are very informative to the model's predictions for the current generation. We develop a comprehensive and publicly available benchmark for building design optimization. We show that the GP model is highly competitive as a surrogate for building energy simulations, in addition to being well-suited for the active learning setting. Our results show that our approach clearly outperforms surrogate-based optimization, and produces solutions close in hypervolume to simulation optimization, while using only a fraction of the simulations and time.
0 BLIS : A Framework for Rapid Instantiation of BLAS Functionality
(2013)

The BLAS Libray Instantiation Software (BLIS) is a new framework for the rapid instantiation of Basic Linear Algebra Subprograms (BLAS) functionality. The fundamental innovation is the insight that virtually all computation within level-2 (matrix-vector) and level-3 (matrix-matrix) BLAS operations can be expressed in terms of very simple kernels. While others had made similar insights, BLIS brings this set down to what we believe is the simplest set that still supports the high performance that the computational science community demands. Higher-level framework code is generalized and implemented in standard C so that it can be reused and/or re-parameterized for different operations (as well as different architectures) with little to no modification. Inserting high-performance kernels into the framework facilitates the immediate optimization of any and all BLAS-like operations which are cast in terms of these kernels, and thus the framework acts as a productivity multiplier. Users of BLAS-dependent applications are given a choice of using the BLIS native interface (which is a C interface that corrects a few known idiosyncracies of the BLAS interface), the traditional Fortran BLAS interface, or through any other higher level interface that chooses to build upon the BLIS interface. Preliminary experimental performance of level-2 and level-3 operations is observed to be competitive with two mature open source libraries (OpenBLAS and ATLAS) as well as an established commercial product (Intel MKL).
Smart homes automation using Z-wave protocol
(2016)

The rapid development of information technology and computer networks make them part of almost everything in our daily life and it became impossible to abandon their use. One of the main and important applications of technology in homes is home automation including controlling and automation of electronic and electrical machines remotely. Wireless Home Automation Networks (WHANs) are used in homes to connect the different devices together and to the Internet. In order to control home devices remotely, there are many popular protocols such as INSTEON, ZigBee, and Home Plug. In this paper, we focus on the relatively new protocol called Z-Wave protocol and we discuss it development and applications in smart homes. This wireless protocol has many advantages over the popular and widely used ZigBee protocol as it provides better reliability, low radio rebirth, easy usage, and easy Interoperability.
SPENCER: A Socially Aware Service Robot for Passenger Guidance and Help in Busy Airports
(2015)

We present an ample description of a socially compliant mobile robotic platform, which is developed in the EU-funded project SPENCER. The purpose of this robot is to assist, inform and guide passengers in large and busy airports. One particular aim is to bring travellers of connecting flights conveniently and efficiently from their arrival gate to the passport control. The uniqueness of the project stems from the strong demand of service robots for this application with a large potential impact for the aviation industry on one side, and on the other side from the scientific advancements in social robotics, brought forward and achieved in SPENCER. The main contributions of SPENCER are novel methods to perceive, learn, and model human social behavior and to use this knowledge to plan appropriate actions in realtime for mobile platforms. In this paper, we describe how the project advances the fields of detection and tracking of individuals and groups, recognition of human social relations and activities, normative human behavior learning, socially-aware task and motion planning, learning socially annotated maps, and conducting empirical experiments to assess socio-psychological effects of normative robot behaviors.
ViewDroid: towards obfuscation-resilient mobile application repackaging detection
(2014)

In recent years, as mobile smart device sales grow quickly, the development of mobile applications (apps) keeps accelerating, so does mobile app repackaging. Attackers can easily repackage an app under their own names or embed advertisements to earn pecuniary profits. They can also modify a popular app by inserting malicious payloads into the original app and leverage its popularity to accelerate malware propagation. In this paper, we propose ViewDroid, a user interface based approach to mobile app repackaging detection. Android apps are user interaction intensive and event dominated, and the interactions between users and apps are performed through user interface, or views. This observation inspires the design of our new birthmark for Android apps, namely, feature view graph, which captures users' navigation behavior across app views. Our experimental results demonstrate that this birthmark can characterize Android apps from a higher level abstraction, making it resilient to code obfuscation. ViewDroid can detect repackaged apps at a large scale, both effectively and efficiently. Our experiments also show that the false positive and false negative rates of ViewDroid are both very low.
Autoenucleation in a 84-year-old dementia patient
(2008)

Background Autoenucleation is a severe, rare form of self-mutilation. The majority of cases have been reported in the 15- to 60-year age group, usually in psychiatric patients with a history of depression or schizophrenia, sometimes caused by drug abuse. Case report We report a case of left-sided autoenucleation in an 84-year-old dementia patient suffering from reactive depression. Medical reports mentioned a suicide attempt 2 weeks prior to the incident, whereupon the patient was admitted to the locked ward of a psychiatric hospital. During one night of inpatient stay, the patient manually autoenucleated his left eye. Inspection of the enucleated organ revealed a completely intact globe with an attached optic nerve 5.5 cm in length. The orbit was filled with a massive haematoma. A contrast-enhanced computed tomography (CT) scan showed an orbital haematoma, absence of the left globe and optic nerve and a chiasmatic lesion, accompanied by an intracranial bleeding into the subarachnoid space. Primary wound closure was performed without complications. Visual acuity of the right eye could not be tested due to the patient's lack of cooperation. Conclusion To the best of our knowledge, this is the only reported case of an elderly patient with primary dementia who performed autoenucleation. Other aspects, such as patient history, suicide attempt, manual eye extraction and chiasma lesion are similar to cases reported earlier. The identification and evaluation of intracranial bleedings and chiasmatic lesions that can be associated with autoenucleation requires a contrast-enhanced CT, especially if a long optic nerve fragment is attached to the enucleated globe.
Selective Pooling Vector for Fine-Grained Recognition
(2015)

We propose a new framework for image recognition by selectively pooling local visual descriptors, and show its superior discriminative power on fine-grained image classification tasks. The representation is based on selecting the most confident local descriptors for nonlinear function learning using a linear approximation in an embedded higher dimensional space. The advantage of our Selective Pooling Vector over the previous state-of-the-art Super Vector and Fisher Vector representations, is that it ensures a more accurate learning function, which proves to be important for classifying details in fine-grained image recognition. Our experimental results corroborate this claim: with a simple linear SVM as the classifier, the selective pooling vector achieves significant performance gains on standard benchmark datasets for various fine-grained tasks such as the CMU Multi-PIE dataset for face recognition, the Caltech-UCSD Bird dataset and the Stanford Dogs dataset for fine-grained object categorization. On all datasets we outperform the state of the arts and boost the recognition rates to 96.4%, 48.9%, 52.0% respectively.
An Open Source Tracking Testbed and Evaluation Web Site
(2005)

We have implemented a GUI-based tracking testbed system in C and Intel OpenCV, running within the Microsoft Windows environment. The motivation for the testbed is to run and log tracking experiments in near real-time. The testbed allows a tracking experiment to be repeated from the same starting state using different tracking algorithms and parameter settings, thereby facilitating comparison of algorithms. We have also developed a tracking evaluation web site to encourage third-party self-evaluation of state-of-the-art tracking algorithms. The site hosts source code for the tracking testbed, a set of ground-truth datasets, and a method for on-line evaluation of uploaded tracking results.
A Survey of Securing Networks Using Software Defined Networking
(2015)

Software Defined Networking (SDN) is rapidly emerging as a new paradigm for managing and controlling the operation of networks ranging from the data center to the core, enterprise, and home. The logical centralization of network intelligence presents exciting challenges and opportunities to enhance security in such networks, including new ways to prevent, detect, and react to threats, as well as innovative security services and applications that are built upon SDN capabilities. In this paper, we undertake a comprehensive survey of recent works that apply SDN to security, and identify promising future directions that can be addressed by such research.
Enabling Personalized Search over Encrypted Outsourced Data with Efficiency Improvement
(2016)

In cloud computing, searchable encryption scheme over outsourced data is a hot research field. However, most existing works on encrypted search over outsourced cloud data follow the model of “one size fits all” and ignore personalized search intention. Moreover, most of them support only exact keyword search, which greatly affects data usability and user experience. So how to design a searchable encryption scheme that supports personalized search and improves user search experience remains a very challenging task. In this paper, for the first time, we study and solve the problem of personalized multi-keyword ranked search over encrypted data (PRSE) while preserving privacy in cloud computing. With the help of semantic ontology WordNet, we build a user interest model for individual user by analyzing the user's search history, and adopt a scoring mechanism to express user interest smartly. To address the limitations of the model of “one size fit all” and keyword exact search, we propose two PRSE schemes for different search intentions. Extensive experiments on real-world dataset validate our analysis and show that our proposed solution is very efficient and effective.
Small-footprint keyword spotting using deep neural networks
(2014)

Our application requires a keyword spotting system with a small memory footprint, low computational cost, and high precision. To meet these requirements, we propose a simple approach based on deep neural networks. A deep neural network is trained to directly predict the keyword(s) or subword units of the keyword(s) followed by a posterior handling method producing a final confidence score. Keyword recognition results achieve 45% relative improvement with respect to a competitive Hidden Markov Model-based system, while performance in the presence of babble noise shows 39% relative improvement.
Convolutional neural networks for small-footprint keyword spotting
(2015)

We explore using Convolutional Neural Networks (CNNs) for a small-footprint keyword spotting (KWS) task. CNNs are attractive for KWS since they have been shown to outperform DNNs with far fewer parameters. We consider two different applications in our work, one where we limit the number of multiplications of the KWS system, and another where we limit the number of parameters. We present new CNN architectures to address the constraints of each applications. We find that the CNN architectures offer between a 27-44% relative improvement in false reject rate compared to a DNN, while fitting into the constraints of each application.
UWB antenna for brain stroke and brain tumour detection
(2016)

UWB Pentagon antenna is designed to detect brain stroke and brain tumour. It is operating at a band from 3.3568– 12.604 GHz in free space and from 3.818 to 9.16 GHz on the normal head model. The antenna has dimensions of 44×30mm2. It is fabricated on FR4-substrate with relative permittivity 4.4 and thickness 1.5mm. The antenna is simulated on the CST Microwave Studio and measured using the network analyser. There is a good agreement between the measured and simulated results of the return loss of the antenna on human's head and head phantom.
An ultracapacitor integrated power conditioner for intermittency smoothing and improving power quality of distribution grid
(2015)

Summary form only given. Penetration of various types of distributed energy resources (DERs) like solar, wind and PHEVs onto the distribution grid is on the rise. There is a corresponding increase in power quality problems and intermittencies on the distribution grid. In order to reduce the intermittencies and improve the power quality of the distribution grid an Ultracapacitor (UCAP) integrated power conditioner is proposed in this paper. UCAP integration gives the power conditioner active power capability which is useful in tackling the grid intermittencies and in improving the voltage sag and swell compensation. UCAPs have low energy density, high power density and fast charge/discharge rates which are all ideal characteristics for meeting high power low energy events like grid intermittencies, sags/swells. In this paper UCAP is integrated into dc-link of the power conditioner through a bi-directional dc-dc converter which helps in providing a stiff dc-link voltage. The integration helps in providing active/reactive power support, intermittency smoothing and sag/swell compensation. Design and control of both the dc-ac inverters and the dc-dc converter are discussed. The simulation model of the overall system is developed and compared to the experimental hardware setup.
Improving bug localization using structured information retrieval
(2013)

Locating bugs is important, difficult, and expensive, particularly for large-scale systems. To address this, natural language information retrieval techniques are increasingly being used to suggest potential faulty source files given bug reports. While these techniques are very scalable, in practice their effectiveness remains low in accurately localizing bugs to a small number of files. Our key insight is that structured information retrieval based on code constructs, such as class and method names, enables more accurate bug localization. We present BLUiR, which embodies this insight, requires only the source code and bug reports, and takes advantage of bug similarity data if available. We build BLUiR on a proven, open source IR toolkit that anyone can use. Our work provides a thorough grounding of IR-based bug localization research in fundamental IR theoretical and empirical knowledge and practice. We evaluate BLUiR on four open source projects with approximately 3,400 bugs. Results show that BLUiR matches or outperforms a current state-of-the-art tool across applications considered, even when BLUiR does not use bug similarity data used by the other tool.
Context-assisted face clustering framework with human-in-the-loop
(2014)

Automatic face clustering, which aims to group faces referring to the same people together, is a key component for face tagging and image management. Standard face clustering approaches that are based on analyzing facial features can already achieve high-precision results. However, they often suffer from low recall due to the large variation of faces in pose, expression, illumination, occlusion, etc. To improve the clustering recall without reducing the high precision, we leverage the heterogeneous context information to iteratively merge the clusters referring to same entities. We first investigate the appropriate methods to utilize the context information at the cluster level, including using of “common scene”, people co-occurrence, human attributes, and clothing. We then propose a unified framework that employs bootstrapping to automatically learn adaptive rules to integrate this heterogeneous contextual information, along with facial features, together. Finally, we discuss a novel methodology for integrating human-in-the-loop feedback mechanisms that leverage human interaction to achieve the high-quality clustering results. Experimental results on two personal photo collections and one real-world surveillance dataset demonstrate the effectiveness of the proposed approach in improving recall while maintaining very high precision of face clustering.
Face Detection and Gesture Recognition for Human-Computer Interaction
(2001)

Reading is a hobby to open the knowledge windows. Besides, it can provide the inspiration and spirit to face this life. By this way, concomitant with the technology development, many companies serve the e-book or book in soft file. The system of this book of course will be much easier. No worry to forget bringing the face detection and gesture recognition for human computer interaction book. You can open the device and get the book by on-line.
Some Correlates of Electronic Health Information Management System Success in Nigerian Teaching Hospitals
(2015)

Nowadays, an electronic health information management system (EHIMS) is crucial for patient care in hospitals. This paper explores the aspects and elements that contribute to the success of EHIMS in Nigerian teaching hospitals. The study adopted a survey research design. The population of study comprised 442 health information management personnel in five teaching hospitals that had implemented EHIMS in Nigeria. A self-developed questionnaire was used as an instrument for data collection. The findings revealed that there is a positive, close relationship between all the identified factors and EHIMS's success: technical factors (r = 0.564, P < 0.05); social factors (r = 0.616, P < 0.05); organizational factors (r = 0.621, P < 0.05); financial factors (r = 0.705, P < 0.05); and political factors (r = 0.589, P < 0.05). We conclude that consideration of all the identified factors was highly significant for the success of EHIMS in Nigerian teaching hospitals.
Deep Discriminative Representation Learning with Attention Map for Scene Classification
(2019)

Learning powerful discriminative features for remote sensing image scene classification is a challenging computer vision problem. In the past, most classification approaches were based on handcrafted features. However, most recent approaches to remote sensing scene classification are based on Convolutional Neural Networks (CNNs). The de facto practice when learning these CNN models is only to use original RGB patches as input with training performed on large amounts of labeled data (ImageNet). In this paper, we show class activation map (CAM) encoded CNN models, codenamed DDRL-AM, trained using original RGB patches and attention map based class information provide complementary information to the standard RGB deep models. To the best of our knowledge, we are the first to investigate attention information encoded CNNs. Additionally, to enhance the discriminability, we further employ a recently developed object function called "center loss," which has proved to be very useful in face recognition. Finally, our framework provides attention guidance to the model in an end-to-end fashion. Extensive experiments on two benchmark datasets show that our approach matches or exceeds the performance of other methods.
Phrase-based Machine Translation is State-of-the-Art for Automatic Grammatical Error Correction
(2016)

In this work, we study parameter tuning towards the M2 metric, the standard metric for automatic grammar error correction (GEC) tasks. After implementing M2 as a scorer in the Moses tuning framework, we investigate interactions of dense and sparse features, different optimizers, and tuning strategies for the CoNLL-2014 shared task. We notice erratic behavior when optimizing sparse feature weights with M2 and offer partial solutions. To our surprise, we find that a bare-bones phrase-based SMT setup with task-specific parameter-tuning outperforms all previously published results for the CoNLL-2014 test set by a large margin (46.37% M2 over previously 40.56%, by a neural encoder-decoder model) while being trained on the same data. Our newly introduced dense and sparse features widen that gap, and we improve the state-ofthe-art to 49.49% M2.