SoroushVahidi/scidocs huggingface dataset:
Similarity-Based Approach for Positive and Unlabeled Learning
(2011)

Positive and unlabelled learning (PU learning) has been investigated to deal with the situation where only the positive examples and the unlabelled examples are available. Most of the previous works focus on identifying some negative examples from the unlabelled data, so that the supervised learning methods can be applied to build a classifier. However, for the remaining unlabelled data, which can not be explicitly identified as positive or negative (we call them ambiguous examples), they either exclude them from the training phase or simply enforce them to either class. Consequently, their performance may be constrained. This paper proposes a novel approach, called similarity-based PU learning (SPUL) method, by associating the ambiguous examples with two similarity weights, which indicate the similarity of an ambiguous example towards the positive class and the negative class, respectively. The local similarity-based and global similarity-based mechanisms are proposed to generate the similarity weights. The ambiguous examples and their similarity-weights are thereafter incorporated into an SVM-based learning phase to build a more accurate classifier. Extensive experiments on real-world datasets have shown that SPUL outperforms state-of-the-art PU learning methods.
Systematic Variation of Prosthetic Foot Spring Affects Center-of-Mass Mechanics and Metabolic Cost During Walking
(2011)

Lower-limb amputees expend more energy to walk than non-amputees and have an elevated risk of secondary disabilities. Insufficient push-off by the prosthetic foot may be a contributing factor. We aimed to systematically study the effect of prosthetic foot mechanics on gait, to gain insight into fundamental prosthetic design principles. We varied a single parameter in isolation, the energy-storing spring in a prototype prosthetic foot, the controlled energy storage and return (CESR) foot, and observed the effect on gait. Subjects walked on the CESR foot with three different springs. We performed parallel studies on amputees and on non-amputees wearing prosthetic simulators. In both groups, spring characteristics similarly affected ankle and body center-of-mass (COM) mechanics and metabolic cost. Softer springs led to greater energy storage, energy return, and prosthetic limb COM push-off work. But metabolic energy expenditure was lowest with a spring of intermediate stiffness, suggesting biomechanical disadvantages to the softest spring despite its greater push-off. Disadvantages of the softest spring may include excessive heel displacements and COM collision losses. We also observed some differences in joint kinetics between amputees and non-amputees walking on the prototype foot. During prosthetic push-off, amputees exhibited reduced energy transfer from the prosthesis to the COM along with increased hip work, perhaps due to greater energy dissipation at the knee. Nevertheless, the results indicate that spring compliance can contribute to push-off, but with biomechanical trade-offs that limit the degree to which greater push-off might improve walking economy.
Meta-Learning in Distributed Data Mining Systems: Issues and Approaches
(2000)

Data mining systems aim to discover patterns and extract useful information from facts recorded in databases. A widely adopted approach to this objective is to apply various machine learning algorithms to compute descriptive models of the available data. Here, we explore one of the main challenges in this research area, the development of techniques that scale up to large and possibly physically distributed databases. Meta-learning is a technique that seeks to compute higher-level classifiers (or classification models), called meta-classifiers, that integrate in some p rincipled fashion multiple classifiers computed separately over different databas es. This study, describes meta-learning and presents the JAM system (Java Ag ents for Meta-learning), an agent-based meta-learning system for large-scale data mining applications. Specifically, it identifies and addresses several impor tant desiderata for distributed data mining systems that stem from thei r additional complexity compared to centralized or host-based systems. Distributed systems may need to deal with heterogenous platforms, with multiple databases and (possibly) different schemas, with the design and imp lementation of scalable and effective protocols for communicating among the data sites, and the selective and efficient use of the information that is gat hered from other peer data sites. Other important problems, intrinsic wi thin ∗Supported in part by an IBM fellowship. data mining systems that must not be ignored, include, first, the abil ity to take advantage of newly acquired information that was not previously av ailable when models were computed and combine it with existing models, and second, the flexibility to incorporate new machine learning methods and d ta mining technologies. We explore these issues within the context of JAM and evaluate various proposed solutions through extensive empirical st udie .
Observations on periorbital and midface aging.
(2007)

BACKGROUND
Many of the anatomical changes of facial aging are still poorly understood. This study looked at the aging process in individuals linearly over time, focusing on aspects of periorbital aging and the upper midface.


METHODS
The author compared photographs of patients' friends and relatives taken 10 to 50 years before with closely matched recent follow-up pictures. The best-matching old and recent pictures were equally sized and superimposed in the computer. The images were then assembled into GIF animations, which automate the fading of one image into the other and back again indefinitely.


RESULTS
The following findings were new to the author: (1) the border of the pigmented lid skin and thicker cheek skin (the lid-cheek junction) is remarkably stable in position over time, becoming more visible by contrast, not by vertical descent as is commonly assumed. (2) Orbicularis wrinkles on the cheek and moles and other markers on the upper midface were also stable over decades. (3) With aging, there can be a distinct change in the shape of the upper eyelid. The young upper lid frequently has a medially biased peak. The upper lid peak becomes more central in the older lid. This article addresses these three issues. No evidence was seen here for descent of the globe in the orbit.


CONCLUSIONS
There seems to be very little ptosis (inferior descent) of the lid-cheek junction or of the upper midface. These findings suggest that vertical descent of skin, and by association, subcutaneous tissue, is not necessarily a major component of aging in those areas. In addition, the arc of the upper lid changes shape in a characteristic way in some patients. Other known changes of the periorbital area are visualized.
Performance of elasticsearch in cloud environment with nGram and non-nGram indexing
(2016)

The fact that technology have changed the lives of human beings cannot be denied. It has drastically reduced the effort needed to perform a particular task and has increased the productivity and efficiency. Computers especially have been playing a very important role in almost all fields in today's world. They are used to store large amount of data in almost all sectors, be it business and industrial sectors, personal lives or any other. The research areas of science and technology uses computers to solve complex and critical problems. Information is the most important requirement of each individual. In this era of quick-growing and huge data, it has become increasingly illogical to analyse it with the help of traditional techniques or relational databases. New big data instruments, architectures and designs have come into existence to give better support to the requirements of organizations/institutions in analysing large data. Specifically, Elasticsearch, a full-text java based search engine, designed keeping cloud environment in mind solves issues of scalability, search in real time, and efficiency that relational databases were not able to address. In this paper, we present our own experience with Elasticsearch an open source, Apache Lucene based, full-text search engine that provides near real-time search ability, as well as a RESTful API for the ease of user in the field of research.
Development of the radiographic union score for tibial fractures for the assessment of tibial fracture healing after intramedullary fixation.
(2010)

BACKGROUND
: The objective was to evaluate the newly developed Radiographic Union Score for Tibial fractures (RUST). Because there is no "gold standard," it was hypothesized that the RUST score would provide substantial improvements compared with previous scores presented in the literature.


METHODS
: Forty-five sets of X-rays of tibial shaft fractures treated with intramedullary fixation were selected. Seven orthopedic reviewers independently scored bony union using RUST. Radiographs were reassessed at 9 weeks. Intraclass correlation coefficients (ICC) with 95% confidence intervals (CI) measured agreement.


RESULTS
: Overall agreement was substantial (ICC, 0.86; 95% CI, 0.79-0.91). There was improved reliability among traumatologists compared with others (ICC = 0.86, 0.81, and 0.83, respectively). Overall intraobserver reliability was also substantial (ICC, 0.88; 95% CI, 0.80-0.96).


CONCLUSIONS
: The RUST score exhibits substantial improvements in reliability from previously published scores and produces equally reproducible results among a variety of orthopedic specialties and experience levels. Because no "gold standards" currently exist against which RUST can be compared, this study provides only the initial step in the score's full validation for use in a clinical context.
Comparison of Measurement-Based Call Admission Control Algorithms for Controlled-Load Service
(1997)

We compare the performance of four admission control algorithms—one parameter-based and three measurementbased—for controlled-load service. The parameter-based admission control ensures that the sum of reserved resources is bounded by capacity. The three measurementbased algorithms are based on measured bandwidth, acceptance region [9], and equivalent bandwidth [7]. We use simulationon several network scenarios to evaluate the link utilization and adherence to service commitment achieved by these four algorithms.
ProteusTM: Abstraction Meets Performance in Transactional Memory
(2016)

The Transactional Memory (TM) paradigm promises to greatly simplify the development of concurrent applications. This led, over the years, to the creation of a plethora of TM implementations delivering wide ranges of performance across workloads. Yet, no universal implementation fits each and every workload. In fact, the best TM in a given workload can reveal to be disastrous for another one. This forces developers to face the complex task of tuning TM implementations, which significantly hampers their wide adoption. In this paper, we address the challenge of automatically identifying the best TM implementation for a given workload. Our proposed system, ProteusTM, hides behind the TM interface a large library of implementations. Underneath, it leverages a novel multi-dimensional online optimization scheme, combining two popular learning techniques: Collaborative Filtering and Bayesian Optimization.
 We integrated ProteusTM in GCC and demonstrate its ability to switch between TMs and adapt several configuration parameters (e.g., number of threads). We extensively evaluated ProteusTM, obtaining average performance <3% from optimal, and gains up to 100x over static alternatives.
Upper limb exoskeleton control based on sliding mode control and feedback linearization
(2013)

Exoskeletons have potential to improve human quality of life by relieving loads on the human musculoskeletal system or by helping motor rehabilitation. Controllers that were initially developed for industrial applications are also applied to control an exoskeleton, despite of major differences in requirements. Nevertheless, which controller has better performance for this specific application remains an open question. This paper presents a comparison between sliding mode control and feedback linearization control. The implementation of the sliding mode controller assumes a complete measurement of the biological system's dynamics. On the other hand, the feedback linearization method does not need any information from the biological system. Our results indicate that a model combining biological control and dynamics could improve several characteristics of robotic exoskeleton, such as energy consumption.
Part 5: Machine Translation Evaluation Chapter 5.1 Introduction
(2010)

The evaluation of machine translation (MT) systems is a vital field of research, both for determining the effectiveness of existing MT systems and for optimizing the performance of MT systems. This part describes a range of different evaluation approaches used in the GALE community and introduces evaluation protocols and methodologies used in the program. We discuss the development and use of automatic, human, task-based and semi-automatic (human-in-the-loop) methods of evaluating machine translation, focusing on the use of a human-mediated translation error rate HTER as the evaluation standard used in GALE. We discuss the workflow associated with the use of this measure, including post editing, quality control, and scoring. We document the evaluation tasks, data, protocols, and results of recent GALE MT Evaluations. In addition, we present a range of different approaches for optimizing MT systems on the basis of different measures. We outline the requirements and specific problems when using different optimization approaches and describe how the characteristics of different MT metrics affect the optimization. Finally, we describe novel recent and ongoing work on the development of fully automatic MT evaluation metrics that can have the potential to substantially improve the effectiveness of evaluation and optimization of MT systems. Progress in the field of machine translation relies on assessing the quality of a new system through systematic evaluation, such that the new system can be shown to perform better than pre-existing systems. The difficulty arises in the definition of a better system. When assessing the quality of a translation, there is no single correct answer; rather, there may be any number of possible correct translations. In addition, when two translations are only partially correct but in different ways it is difficult to distinguish quality. Moreover, quality assessments may be dependent on the intended use for the translation, e.g., the tone of a translation may be crucial in some applications, but irrelevant in other applications. Traditionally, there are two paradigms of machine translation evaluation: (1) Glass Box evaluation, which measures the quality of a system based upon internal system properties, and (2) Black Box evaluation, which measures the quality of a system based solely upon its output, without respect to the internal mechanisms of the translation system. Glass Box evaluation focuses upon an examination of the system's linguistic
A Model-Based Method for Computer-Aided Medical Decision-Making
(1978)

While MYCIN and PIP were under development at Stanford and Tufts! M.I. T., a group of computer scientists at Rutgers University was developing a system to aid in the evaluation and treatment of patients with glaucoma. The group was led by Professor Casimir K ulikou1ski, a researcher with extensive background in mathematical and pattern-recognition approaches to computer-based medical decision making (Nordyke et al., 1971), working within the Rutgers Research Resource on Computers in Biomedicine headed by Professor Saul Amarel. Working collaboratively with Dr. Arin Safir, Professor of Ophthalmology, "who was then based at the Mt. Sinai School of Medicine in New York City, Kulikowski and Sholom Weiss (a graduate student at Rutgers who "went on to become a research scientist there) developed a method of computer-assisted medical decision making that was based on causal-associational network (CASNET) models of disease. Although the work was inspired by the glaucoma domain, the approach had general features that were later refined in the development of the EXPERT system-building tool (see Chapters 18 and 20). A CASNET model consists of three rnain components: observations of a patient, pathophysiological states, and disease classifications. As observations are recorded, they are associated with the appropriate intennediate states. These states, in turn, are typically causally related, thereby forming a network that summarizes the mechanisms of disease. It is these patterns of states in the network that are linked to individual disease classes. Strat-
Storage and Querying of E-Commerce Data
(2001)

New generation of e-commerce applications require data sch emas that are constantly evolving and sparsely populated. The co nventional horizontal row representation fails to meet these re quir ments. We represent objects in a vertical format storing an o bject as a set of tuples. Each tuple consists of an object identifier and attribute name-value pair. Schema evolution is now easy. Ho wever, writing queries against this format becomes cumberso me. We create a logical horizontal view of the vertical representa tion and transform queries on this view to the vertical table. We pres ent alternative implementations and performance results that s ow the effectiveness of the vertical representation for sparse da ta. We also identify additional facilities needed in database systems to support these applications well.
Jitter and Phase Noise in Ring Oscillators
(1999)

A companion analysis of clock jitter and phase noise of single-ended and differential ring oscillators is presented. The impulse sensitivity functions are used to derive expressions for the jitter and phase noise of ring oscillators. The effect of the number of stages, power dissipation, frequency of oscillation, and shortchannel effects on the jitter and phase noise of ring oscillators is analyzed. Jitter and phase noise due to substrate and supply noise is discussed, and the effect of symmetry on the upconversion of 1/f noise is demonstrated. Several new design insights are given for low jitter/phase-noise design. Good agreement between theory and measurements is observed.
Infinite Edge Partition Models for Overlapping Community Detection and Link Prediction
(2015)

A hierarchical gamma process infinite edge partition model is proposed to factorize the binary adjacency matrix of an unweighted undirected relational network under a Bernoulli-Poisson link. The model describes both homophily and stochastic equivalence, and is scalable to big sparse networks by focusing its computation on pairs of linked nodes. It can not only discover overlapping communities and inter-community interactions, but also predict missing edges. A simplified version omitting inter-community interactions is also provided and we reveal its interesting connections to existing models. The number of communities is automatically inferred in a nonparametric Bayesian manner, and efficient inference via Gibbs sampling is derived using novel data augmentation techniques. Experimental results on four real networks demonstrate the models’ scalability and state-of-the-art performance.
GCap: Graph-based Automatic Image Captioning
(2004)

Given an image, how do we automatically assign keywords to it? In this paper, we propose a novel, graph-based approach (GCap) which outperforms previously reported methods for automatic image captioning. Moreover, it is fast and scales well, with its training and testing time linear to the data set size. We report auto-captioning experiments on the "standard" Corel image database of 680 MBytes, where GCap outperforms recent, successful auto-captioning methods by up to 10 percentage points in captioning accuracy (50% relative improvement).
A cortical motor nucleus drives the basal ganglia-recipient thalamus in singing birds
(2012)

The pallido-recipient thalamus transmits information from the basal ganglia to the cortex and is critical for motor initiation and learning. Thalamic activity is strongly inhibited by pallidal inputs from the basal ganglia, but the role of nonpallidal inputs, such as excitatory inputs from cortex, remains unclear. We simultaneously recorded from presynaptic pallidal axon terminals and postsynaptic thalamocortical neurons in a basal ganglia–recipient thalamic nucleus that is necessary for vocal variability and learning in zebra finches. We found that song-locked rate modulations in the thalamus could not be explained by pallidal inputs alone and persisted following pallidal lesion. Instead, thalamic activity was likely driven by inputs from a motor cortical nucleus that is also necessary for singing. These findings suggest a role for cortical inputs to the pallido-recipient thalamus in driving premotor signals that are important for exploratory behavior and learning.
A Graph Traversal Based Approach to Answer Non-Aggregation Questions Over DBpedia
(2015)

We present a question answering system over DBpedia, filling the gap between user information needs expressed in natural language and a structured query interface expressed in SPARQL over the underlying knowledge base (KB). Given the KB, our goal is to comprehend a natural language query and provide corresponding accurate answers. Focusing on solving the non-aggregation questions, in this paper, we construct a subgraph of the knowledge base from the detected entities and propose a graph traversal method to solve both the semantic item mapping problem and the disambiguation problem in a joint way. Compared with existing work, we simplify the process of query intention understanding and pay more attention to the answer path ranking. We evaluate our method on a non-aggregation question dataset and further on a complete dataset. Experimental results show that our method achieves best performance compared with several state-of-the-art systems.
Optimal Cell Load and Throughput in Green Small Cell Networks With Generalized Cell Association
(2016)

This paper thoroughly explores the fundamental interactions between cell association, cell load, and throughput in a green (energy-efficient) small cell network in which all base stations form a homogeneous Poisson point process (PPP) of intensity λB and all users form another independent PPP of intensity λ∪. Cell voidness, usually disregarded due to rarity in cellular network modeling, is first theoretically analyzed under generalized (channel-aware) cell association (GCA). We show that the void cell probability cannot be neglected any more since it is bounded above by exp(-λ∪/λB) that is typically not small in a small cell network. The accurate expression of the void cell probability for GCA is characterized and it is used to derive the average cell and user throughputs. We learn that cell association and cell load λ∪/λB significantly affect these two throughputs. According to the average cell and user throughputs, the green cell and user throughputs are defined respectively to reflect whether the energy of a base station is efficiently used to transmit information or not. In order to achieve satisfactory throughput with certain level of greenness, cell load should be properly determined. We present the theoretical solutions of the optimal cell loads that maximize the green cell and user throughputs, respectively, and verify their correctness by simulation.