SoroushVahidi/scidocs huggingface dataset:
Profile hidden Markov models
(1998)

The recent literature on profile hidden Markov model (profile HMM) methods and software is reviewed. Profile HMMs turn a multiple sequence alignment into a position-specific scoring system suitable for searching databases for remotely homologous sequences. Profile HMM analyses complement standard pairwise comparison methods for large-scale sequence analysis. Several software implementations and two large libraries of profile HMMs of common protein domains are available. HMM methods performed comparably to threading methods in the CASP2 structure prediction exercise.
Scaling Agile Development in Mechatronic Organizations - A Comparative Case Study
(2017)

Agile software development principles enable companies to successfully and quickly deliver software by meeting their customers' expectations while focusing on high quality. Many companies working with pure software systems have adopted these principles, but implementing them in companies dealing with non-pure software products is challenging. We identified a set of goals and practices to support large-scale agile development in companies that develop software-intense mechatronic systems. We used an inductive approach based on empirical data collected during a longitudinal study with six companies in the Nordic region. The data collection took place over two years through focus group workshops, individual on-site interviews, and complementary surveys. The primary benefit of large-scale agile development is improved quality, enabled by practices that support regular or continuous integration between teams delivering software, hardware, and mechanics. In this regard, the most beneficial integration cycle for deliveries is every four weeks, while continuous integration on a daily basis would favor software teams, other disciplines does not seem to benefit from faster integration cycles. We identified 108 goals and development practices supporting agile principles among the companies, most of them concerned with integration, therefrom, 26 agile practices are unique to the mechatronics domain to support adopting agile beyond pure software development teams. 16 of these practices are considered as key enablers, confirmed by our control cases.
Induced pluripotent stem cell-based modeling of neurodegenerative diseases: a focus on autophagy
(2017)

The advent of cell reprogramming has enabled the generation of induced pluripotent stem cells (iPSCs) from patient skin fibroblasts or blood cells and their subsequent differentiation into tissue-specific cells, including neurons and glia. This approach can be used to recapitulate disease-specific phenotypes in classical cell culture paradigms and thus represents an invaluable asset for disease modeling and drug validation in the framework of personalized medicine. The autophagy pathway is a ubiquitous eukaryotic degradation and recycling system, which relies on lysosomal degradation of unwanted and potentially cytotoxic components. The relevance of autophagy in the pathogenesis of neurodegenerative diseases is underlined by the observation that disease-linked genetic variants of susceptibility factors frequently result in dysregulation of autophagic-lysosomal pathways. In particular, disrupted autophagy is implied in the accumulation of potentially neurotoxic products such as protein aggregates and their precursors and defective turnover of dysfunctional mitochondria. Here, we review the current state of iPSC-based assessment of autophagic dysfunction in the context of neurodegenerative disease modeling. The collected data show that iPSC technology is capable to reveal even subtle alterations in subcellular homeostatic processes, which form the molecular basis for disease manifestation.
Semantic Granularity in Ontology-Driven Geographic Information Systems
(2002)

The integration of information of different kinds, such as spatial and alphanumeric at different levels of detail, is a challenge. While a solution is not reached, it is widely recognized that the need to integrate information is so pressing that it does not matter if detail is lost, as long as integration is achieved. This paper shows the potential for information retrieval at different levels of granularity inside the framework of information systems based on ontologies. Ontologies are theories that use a specific vocabulary to describe entities, classes, properties and functions related to a certain view of the world. The use of an ontology, translated into an active information system component, leads to ontology-driven information systems and, in the specific case of GIS, leads to what we call ontology-driven geographic information systems.
Bidirectional Current-Fed Flyback-Push-Pull DC-DC Converter
(2011)

This paper proposes a new dc-dc static power converter, designated Bidirectional Current-Fed Flyback-Push-Pull DC-DC Converter. Circuit operation, analysis, simulation, design example and experimental results are included in the paper. What distinguishes the proposed converter from the previous circuits is the existence of input and output inductors, which provides a significant reduction of both the power source and the load side current ripple. The proposed converter is suitable for the renewable electric power systems, such as those having fuel cells as the DC-source power supply. It is also a good candidate for electric vehicle power systems, where bidirectional power flow related with battery charge and discharge is necessary.
Semantic Linking of Learning Object Repositories to DBpedia
(2012)

Large-sized repositories of learning objects (LOs) are difficult to create and also to maintain. In this paper we propose a way to reduce this drawback by improving the classification mechanisms of the LO repositories. Specifically, we present a solution to automate the LO classification of the Universia repository, a collection of more than 15 million of LOs represented according to the IEEE LOM standard. Although a small part of these LOs is correctly classified, most are unclassified and therefore searching and accessing information is difficult. Our solution makes use of the categories provided by DBpedia, a linked data repository, to automatically improve its classification through a graph-based filtering algorithm, which selects the most suitable categories for describing a LO. Once selected, these categories will classify the LO, linking its classification metadata with a set of DBpedia categories.
Digital color imaging
(1997)

This paper surveys current technology and research in the area of digital color imaging. In order to establish the background and lay down terminology, fundamental concepts of color perception and measurement are first presented using vector-space notation and terminology. Present-day color recording and reproduction systems are reviewed along with the common mathematical models used for representing these devices. Algorithms for processing color images for display and communication are surveyed, and a forecast of research trends is attempted. An extensive bibliography is provided.
Finding an emotional face in a crowd: emotional and perceptual stimulus factors influence visual search efficiency.
(2015)

In this article, we examine how emotional and perceptual stimulus factors influence visual search efficiency. In an initial task, we run a visual search task, using a large number of target/distractor emotion combinations. In two subsequent tasks, we then assess measures of perceptual (rated and computational distances) and emotional (rated valence, arousal and potency) stimulus properties. In a series of regression analyses, we then explore the degree to which target salience (the size of target/distractor dissimilarities) on these emotional and perceptual measures predict the outcome on search efficiency measures (response times and accuracy) from the visual search task. The results show that both emotional and perceptual stimulus salience contribute to visual search efficiency. The results show that among the emotional measures, salience on arousal measures was more influential than valence salience. The importance of the arousal factor may be a contributing factor to contradictory history of results within this field.
Deep Compression: Compressing Deep Neural Network with Pruning, Trained Quantization and Huffman Coding
(2016)

Neural networks are both computationally intensive and memory intensive, making them difficult to deploy on embedded systems with limited hardware resources. To address this limitation, we introduce “deep compression”, a three stage pipeline: pruning, trained quantization and Huffman coding, that work together to reduce the storage requirement of neural networks by 35× to 49× without affecting their accuracy. Our method first prunes the network by learning only the important connections. Next, we quantize the weights to enforce weight sharing, finally, we apply Huffman coding. After the first two steps we retrain the network to fine tune the remaining connections and the quantized centroids. Pruning, reduces the number of connections by 9× to 13×; Quantization then reduces the number of bits that represent each connection from 32 to 5. On the ImageNet dataset, our method reduced the storage required by AlexNet by 35×, from 240MB to 6.9MB, without loss of accuracy. Our method reduced the size of VGG-16 by 49× from 552MB to 11.3MB, again with no loss of accuracy. This allows fitting the model into on-chip SRAM cache rather than off-chip DRAM memory. Our compression method also facilitates the use of complex neural networks in mobile applications where application size and download bandwidth are constrained. Benchmarked on CPU, GPU and mobile GPU, compressed network has 3× to 4× layerwise speedup and 3× to 7× better energy efficiency.
Swarm intelligence and robotics
(2008)

Purpose – The aim of this paper is to provide a review of recent developments in the application of swarm intelligence to robotics. Design/methodology/approach – This paper initially considers swarm intelligence and then discusses its application to robotics through reference to a number of recent research programmes. Findings – Based on the principles of swarm intelligence, which is derived from the swarming behaviour of biological entities, swarm robotics research is widespread but still at an early stage. Much aims to gain an understanding of biological swarming and apply it to autonomous, mobile multi-robot systems. European activities are particularly strong and several large, collaborative projects are underway. Research in the USA has a military bias and much is funded by defence agencies. Originality/value – The paper provides an up-to-date insight into swarm robot research and development.
A Span-Extraction Dataset for Chinese Machine Reading Comprehension
(2018)

Machine Reading Comprehension (MRC) has become enormously popular recently and has attracted a lot of attention. However, the existing reading comprehension datasets are mostly in English. In this paper, we introduce a SpanExtraction dataset for Chinese Machine Reading Comprehension to add language diversities in this area. The dataset is composed by near 20,000 real questions annotated by human on Wikipedia paragraphs. We also annotated a challenge set which contains the questions that need comprehensive understanding and multi-sentence inference throughout the context. With the release of the dataset, we hosted the Second Evaluation Workshop on Chinese Machine Reading Comprehension (CMRC 2018). We hope the release of the dataset could further accelerate the machine reading comprehension research in Chinese language.1
VNF-FG design and VNF placement for 5G mobile networks
(2016)

Network function virtualization (NFV) is envisioned as one of the critical technologies in 5th-Generation (5G) mobile networks. This paper investigates the virtual network function forwarding graph (VNF-FG) design and virtual network function (VNF) placement for 5G mobile networks. We first propose a two-step method composed of flow designing and flow combining for generating VNF-FGs according to network service requests. For mapping VNFs in the generated VNF-FG to physical resources, we then modify the hybrid NFV environment with introducing more types of physical nodes and mapping modes for the sake of completeness and practicality, and formulate the VNF placement optimization problem for achieving lower bandwidth consumption and lower maximum link utilization simultaneously. To resolve this problem, four genetic algorithms are proposed on the basis of the frameworks of two existing algorithms (multiple objective genetic algorithm and improved non-dominated sorting genetic algorithm). Simulation results show that Greedy-NSGA-II achieves the best performance among our four algorithms. Compared with three non-genetic algorithms (random, backtracking mapping and service chains deployment with affiliation-aware), Greedy-NSGA-II reduces 97.04%, 87.76% and 88.42% of the average total bandwidth consumption, respectively, and achieves only 13.81%, 25.04% and 25.41% of the average maximum link utilization, respectively. Moreover, using our VNF-FG design method and Greedy-NSGA-II together can also reduce the total bandwidth consumption remarkably.
A Survey on Semi-Supervised Learning Techniques
(2014)

Semi-supervised learning is a learning standard which deals with the study of how computers and natural systems such as human beings acquire knowledge in the presence of both labeled and unlabeled data. Semi–supervised learning based methods are preferred when compared to the supervised and unsupervised learning because of the improved performance shown by the semi-supervised approaches in the presence of large volumes of data. Labels are very hard to attain while unlabeled data are surplus, therefore semi-supervised learning is a noble indication to shrink human labor and improve accuracy. There has been a large spectrum of ideas on semi-supervised learning. In this paper we bring out some of the key approaches for semi-supervised learning.
Explicit reference modeling methodology in parametric CAD system
(2014)

Today parametric associative CAD systems must help companies to create more efficient virtual development processes. While dealing with complex parts (e.g. the number of surfaces of the solid) no CAD modeling methodology is existing. Based on the analysis of industrial designers’ practices as well as student practices on CAD, we identified key factors that lead to better performance. Our objective in this article is to propose a practical method for complex parts modeling in parametric CAD system. An illustration of the performances and the results obtained by this method are presented comparing the traditional method with the proposed one while using an academic case and then an industrial case. 2013 Elsevier B.V. All rights reserved.
Memory-Size-Assisted Buffer Overflow Detection
(2014)

-Since the first buffer overflow problem occurred, many detection techniques have been presented. These techniques are effective in detecting most attacks, but some attacks still remain undetected. In order to be more effective, a memory-size-assisted buffer overflow detection(MBOD) is presented. The key feature of buffer overflow is that the size of the source memory is bigger than the size of the destination memory when memory copying operation occurs. By capturing memory copying operation and comparing memory size at run time, MBOD detects buffer overflow. MBOD collects the information of memory size in both dynamic way and static way. An implementation shows that the technique is feasible.
Discussions on control loop design in average current mode control [PWM DC/DC power convertors]
(2000)

Large control output ripple in ACMC (average current mode control) PWM DC/DC converters exposes challenges in accurate modeling and design. In this paper, superposition models are utilized to perform control design analysis for ACMC PWM DC/DC converters. The ACMC DC/DC PWM converter system is converted to a cascade control structure and a step-by-step control design algorithm is then proposed. The control design algorithms differ from existing, conventional algorithms because they carefully compensate for newly discovered feed forward influence in the model.
A Reinforcement Learning Approach to job-shop Scheduling
(1995)

We apply reinforce merit learning methods to learn domain-specific heuristics for job shop scheduling A repair-based scheduler starts with a critical-path schedule and incrementally repairs constraint violations with the goal of finding a short conflict-free schedule The tem poral difference algorithm is applied to tram a neural network to learn a heuristic evaluation function over s ta tes This evaluation function is used by a one-step lookahead search procedure to find good solutions to new scheduling problems We evaluate this approach on synthetic problems and on problems from a NASA space shuttle pay load processing task The evaluation function is trained on problems involving a small number of jobs and then tested on larger proble ms The TD sclied uler performs better than the best known existing algorithm for this task—Zwehen s iterative repair method based on simulated annealing The results suggest that reinforcement l<arn mg can provide a new method for constructing high-performance scheduling systems
The influence of urgency on decision time
(2000)

A fruitful quantitative approach to understanding how the brain makes decisions has been to look at the time needed to make a decision, and how it is affected by factors such as the supply of information, or an individual's expectations. This approach has led to a model of decision-making, consistent with recent neurophysiological data, that explains the observed variability of reaction times and correctly predicts the effects of altered expectations. Can it also predict what happens when the urgency of making the response changes? We asked subjects to make eye movements to low-visibility targets either as fast or as accurately as possible, and found that the model does indeed predict the timing of their responses: the degree of urgency seems to influence the criterion level at which a decision signal triggers a response.
Optimal design methodology for LLC resonant converter
(2006)

Although LLC resonant converter can achieve wide operation range with high efficiency, lack of design methodology makes it difficult to be implemented. In this paper, based on the theoretical analysis on the operation principles during normal condition and holdup time, the relationship between converter efficiency and operation range with different circuit parameters has be revealed. An optimal design methodology has been developed based on the revealed relationship. A 1MHz, 1kW LLC converter is designed to verify the proposed method.
LLC series resonant converter based LED lamp driver with ZVS
(2012)

This paper proposes an LLC resonant converter based LED (Light Emitting Diode) lamp driver with high power factor. The proposed circuit uses a boost converter for PFC (Power Factor Correction) which operates in continuous conduction mode (CCM) and a quasi half bridge resonant converter to drive the LED lamp load. The LLC converter is designed such that solid state switches of quasi half bridge are working under zero voltage switching (ZVS) to reduce switching losses. The analysis, design, modeling and simulation of 50 W LED driver are carried out using MATLAB/Simulink tool for universal AC mains. The power quality indices are calculated such as total harmonic distortion of AC mains current (THDi), power factor (PF) and crest factor (CF) to evaluate the performance of proposed LED lamp driver.
Single-stage Flyback converter for constant current output LED driver with power factor correction
(2009)

This paper presents a LED driver circuit based on single-stage Flyback converter with power factor correction. Voltage following control and Nonlinear carrier control are applied to constant current mode Flyback converter which is combined with constant current driver technique. By designing the outer loop to stabilize the output voltage and the inner loop to shape input current waveform, that makes the system achieve unity power factor. The circuit doesn't need an expensive multiplier as classical multiplier control. To verify the performance, the proposed circuit was confirmed by simulation and experiment. From the results, the proposed system shows high power factor with 0.96 and constant current output.
Approximate analysis of the resonant LCL DC-DC converter
(2004)

An approximate analysis of LCL converters operating above and below resonance is presented. The study, based on replacing the rectifier and load by an equivalent parallel resistance, applies the fundamental harmonics method and the assumption that the current through the diodes of the output rectifier has a sinusoidal waveform. Equations obtained for the conduction angle of these diodes (less than /spl pi/ in discontinuous and equal to /spl pi/ in continuous conduction modes) are used for developing the output-to-input voltage ratio as a function of three independent parameters. The theoretical and experimental results are in good agreement.
Online Tracker Optimization for Multi-Pedestrian Tracking Using a Moving Vehicle Camera
(2018)

Multi-pedestrian tracking (MPT) on the road is closely related to a reduction in the possibility of pedestrian–vehicle collisions when using advanced driver assistance systems. Therefore, this paper focuses on MPT on real roads using a moving camera. Although convolutional neural network (CNN)-based single object tracking methods have recently been proposed, the online learning of CNN for MPT is a significant burden in terms of real-time processing. However, because the features extracted from CNN are a good representation and achieve a high generalization capability, to reduce the learning time, a shallow pre-trained CNN was applied in the present study as a feature extractor instead of an object tracker As an online tracker, this study uses random ferns (RF) with pre-trained CNN output feature, which can make the problem computationally tractable and robustness. However, a large RF requires significant amount of memory and computational complexity, and is still a burden in terms of online learning in cases of multi-pedestrian tracking. Therefore, we introduce a teacher–student model compression algorithm for selecting a few optimal ferns for each tracker, thereby, reducing the online learning time. The online learning of a student-RF tracker has an advantage in that it can adaptively update the tracker to achieve robustness against various changes, such as in pose and illumination, and partial occlusions within a limited period of time. The proposed algorithm was successfully applied to benchmark video sequences captured from a moving camera that include multiple pedestrians in various poses. Specifically, the proposed algorithm yields a more accurate tracking performance than the other state-of-the-art methods.