SoroushVahidi/scidocs huggingface dataset:
The evolutionary significance of polyploidy
(2017)

Polyploidy, or the duplication of entire genomes, has been observed in prokaryotic and eukaryotic organisms, and in somatic and germ cells. The consequences of polyploidization are complex and variable, and they differ greatly between systems (clonal or non-clonal) and species, but the process has often been considered to be an evolutionary 'dead end'. Here, we review the accumulating evidence that correlates polyploidization with environmental change or stress, and that has led to an increased recognition of its short-term adaptive potential. In addition, we discuss how, once polyploidy has been established, the unique retention profile of duplicated genes following whole-genome duplication might explain key longer-term evolutionary transitions and a general increase in biological complexity.
Dietary energy density is associated with obesity and the metabolic syndrome in U.S. adults.
(2007)

OBJECTIVE
Rising obesity rates have been linked to the consumption of energy-dense diets. We examined whether dietary energy density was associated with obesity and related disorders including insulin resistance and the metabolic syndrome.


RESEARCH DESIGN AND METHODS
We conducted a cross-sectional study using nationally representative data of U.S. adults > or =20 years of age from the 1999-2002 National Health and Nutrition Examination Survey (n = 9,688). Dietary energy density was calculated based on foods only. We used a series of multivariate linear regression models to determine the independent association between dietary energy density, obesity measures (BMI [in kilograms per meters squared] and waist circumference [in centimeters]), glycemia, or insulinemia. We used multivariate Poisson regression models to determine the independent association between dietary energy density and the metabolic syndrome as defined by the National Cholesterol and Education Program (Adult Treatment Panel III).


RESULTS
Dietary energy density was independently and significantly associated with higher BMI in women (beta = 0.44 [95% CI 0.14-0.73]) and trended toward a significant association in men (beta = 0.37 [-0.007 to 0.74], P = 0.054). Dietary energy density was associated with higher waist circumference in women (beta = 1.11 [0.42-1.80]) and men (beta = 1.33 [0.46-2.19]). Dietary energy density was also independently associated with elevated fasting insulin (beta = 0.65 [0.18-1.12]) and the metabolic syndrome (prevalence ratio = 1.10 [95% CI 1.03-1.17]).


CONCLUSIONS
Dietary energy density is an independent predictor of obesity, elevated fasting insulin levels, and the metabolic syndrome in U.S. adults. Intervention studies to reduce dietary energy density are warranted.
Performance Evaluation and Optimization of Communication Infrastructure for the Next Generation Air Transportation System
(2015)

Automatic dependent surveillance-broadcast (ADS-B) is one of the fundamental surveillance technologies to improve the safety, capacity, and efficiency of the national airspace system. ADS-B shares its frequency band with current radar systems that use the same 1,090 MHz band. The coexistence of radar systems and ADS-B systems is a key issue to detect and resolve conflicts in the next generation air transportation system (NextGen). This paper focuses on the performance evaluation of ADS-B with existing radar systems and performance optimization of ADS-B systems to improve the safety and efficiency of conflict detection and resolution in NextGen. We have developed a simulation environment which models the complex interplay among the air traffic load, the radar systems, the ADS-B systems, and the wireless channel. A simple model is used to derive an analytical expression for a performance metric of ADS-B. This model is then used to design an adaptive ADS-B protocol for maximizing the information coverage while guaranteeing reliable and timely communication in air traffic surveillance networks. Simulation results show that the effect of ADS-B interference on the current radar system is negligible. The operational ability of ADS-B meets the performance requirements of conflict detection and resolution in air traffic control. However, upgrades are required in the current radar system for operation within an ADS-B environment since the current radars can significantly degrade the ADS-B performance. Numerical results indicate that the proposed adaptive protocol has the potential to improve the performance of conflict detection and resolution in air traffic control.
Cross-Validation and the Estimation of Conditional Probability Densities
(2004)

Many practical problems, especially some connected with forecasting, require nonparametric estimation of conditional densities from mixed data. For example, given an explanatory data vector X for a prospective customer, with components that could include the customer’s salary, occupation, age, sex, marital status, and address, a company might wish to estimate the density of the expenditure, Y , that could be made by that person, basing the inference on observations of (X,Y) for previous clients. Choosing appropriate smoothing parameters for this problem can be tricky, not in the least because plug-in rules take a particularly complex form in the case of mixed data. An obvious difficulty is that there exists no general formula for the optimal smoothing parameters. More insidiously, and more seriously, it can be difficult to determine which components of X are relevant to the problem of conditional inference. For example, if the jth component of X is independent of Y , then that component is irrelevant to estimating the density of Y given X, and ideally should be dropped before conducting inference. In this article we show that cross-validation overcomes these difficulties. It automatically determines which components are relevant and which are not, through assigning large smoothing parameters to the latter and consequently shrinking them toward the uniform distribution on the respective marginals. This effectively removes irrelevant components from contention, by suppressing their contribution to estimator variance; they already have very small bias, a consequence of their independence of Y . Cross-validation also yields important information about which components are relevant; the relevant components are precisely those that cross-validation has chosen to smooth in a traditional way, by assigning them smoothing parameters of conventional size. Indeed, cross-validation produces asymptotically optimal smoothing for relevant components, while eliminating irrelevant components by oversmoothing. In the problem of nonparametric estimation of a conditional density, cross-validation comes into its own as a method with no obvious peers.
How Much Attention Do You Need? A Granular Analysis of Neural Machine Translation Architectures
(2018)

ACL 2018 • Baseline: 6 layer Transformer, 512 hidden units • Data sets: IWSLT'16, WMT'17 • Metrics: BLEU (and METEOR in the paper) • 3 runs, reporting mean and standard deviation Encoder/Decoder Combinations • Architecture Definition Language • Allows easy experimentation of Neural Machine Translation (NMT) architecture variations • Detailed analysis of NMT architecture combinations • Multiple source attention layers and residual feedforward layer are key • Self-attention more important on the source side Introduction
Relationship of personality to performance motivation: a meta-analytic review.
(2002)

This article provides a meta-analysis of the relationship between the five-factor model of personality and 3 central theories of performance motivation (goal-setting, expectancy, and self-efficacy motivation). The quantitative review includes 150 correlations from 65 studies. Traits were organized according to the five-factor model of personality. Results indicated that Neuroticism (average validity = -.31) and Conscientiousness (average validity = .24) were the strongest and most consistent correlates of performance motivation across the 3 theoretical perspectives. Results further indicated that the validity of 3 of the Big Five traits--Neuroticism, Extraversion, and Conscientiousness--generalized across studies. As a set, the Big Five traits had an average multiple correlation of .49 with the motivational criteria, suggesting that the Big Five traits are an important source of performance motivation.
Personality and job performance: the Big Five revisited.
(2000)

Prior meta-analyses investigating the relation between the Big 5 personality dimensions and job performance have all contained a threat to construct validity, in that much of the data included within these analyses was not derived from actual Big 5 measures. In addition, these reviews did not address the relations between the Big 5 and contextual performance. Therefore, the present study sought to provide a meta-analytic estimate of the criterion-related validity of explicit Big 5 measures for predicting job performance and contextual performance. The results for job performance closely paralleled 2 of the previous meta-analyses, whereas analyses with contextual performance showed more complex relations among the Big 5 and performance. A more critical interpretation of the Big 5-performance relationship is presented, and suggestions for future research aimed at enhancing the validity of personality predictors are provided.
Common method biases in behavioral research: a critical review of the literature and recommended remedies.
(2003)

Interest in the problem of method biases has a long history in the behavioral sciences. Despite this, a comprehensive summary of the potential sources of method biases and how to control for them does not exist. Therefore, the purpose of this article is to examine the extent to which method biases influence behavioral research results, identify potential sources of method biases, discuss the cognitive processes through which method biases influence responses to measures, evaluate the many different procedural and statistical techniques that can be used to control method biases, and provide recommendations for how to select appropriate procedural and statistical remedies for different types of research settings.
The happy personality: a meta-analysis of 137 personality traits and subjective well-being.
(1998)

This meta-analysis used 9 literature search strategies to examine 137 distinct personality constructs as correlates of subjective well-being (SWB). Personality was found to be equally predictive of life satisfaction, happiness, and positive affect, but significantly less predictive of negative affect. The traits most closely associated with SWB were repressive-defensiveness, trust, emotional stability, locus of control-chance, desire for control, hardiness, positive affectivity, private collective self-esteem, and tension. When personality traits were grouped according to the Big Five factors, Neuroticism was the strongest predictor of life satisfaction, happiness, and negative affect. Positive affect was predicted equally well by Extraversion and Agreeableness. The relative importance of personality for predicting SWB, how personality might influence SWB, and limitations of the present review are discussed.
Approximate 32-bit floating-point unit design with 53% power-area product reduction
(2016)

The floating-point unit is one of the most common building block in any computing system and is used for a huge number of applications. By combining two state-of-the-art techniques of imprecise hardware, namely Gate-Level Pruning and Inexact Speculative Adder, and by introducing a novel Inexact Speculative Multiplier architecture, three different approximate FPUs and one reference IEEE-754 compliant FPU have been integrated in a 65 nm CMOS process within a low-power multi-core processor. Silicon measurements show up to 27% power, 36% area and 53 % power-area product savings compared to the IEEE-754 single-precision FPU. Accuracy loss has been evaluated with a high-dynamic-range image tone-mapping algorithm, resulting in small but non-visible errors with image PSNR value of 90 dB.
Meandered Variable Pitch angle Printed Quadrifilar Helix Antenna
(2009)

A new method of Meandered Variable Pitch angle Printed Quadrifilar Helix Antenna (MVPQHA) is described. This type of antenna helps in reducing the size of the Printed Quadrifilar Helix Antenna (PQHA) and makes the bandwidth of the antenna broader. The new type of antenna is compared with other existing types of Printed Quadrifilar helix antenna in terms of size, return loss and bandwidth.
Need Satisfaction , Motivation , and Well-Being in the Work Organizations of a Former Eastern Bloc Country : A Cross-Cultural Study of Self-Determination
(2001)

Past studies in U.S. work organizations have supported a model derived from self-determination theory in which autonomy-supportive work climates predict satisfaction of the intrinsic needs for competence, autonomy, and relatedness, which in turn predict task motivation and psychological adjustment on the job. To test this model cross-culturally, the authors studied employees of state-owned companies in Bulgaria, a country that has traditionally had a central-planning economy, a totalitarian political system, and collectivist values. A sample from a privately owned American corporation was used for comparison purposes. Results using structural equation modeling suggested that the model fit the data from each country, that the constructs were equivalent across countries, and that some paths of the structural model fit equivalently for the two countries but that county moderated the other paths.
WaveletNet: Logarithmic Scale Efficient Convolutional Neural Networks for Edge Devices
(2018)

We present a logarithmic-scale efficient convolutional neural network architecture for edge devices, named WaveletNet. Our model is based on the well-known depthwise convolution, and on two new layers, which we introduce in this work: a wavelet convolution and a depthwise fast wavelet transform. By breaking the symmetry in channel dimensions and applying a fast algorithm, WaveletNet shrinks the complexity of convolutional blocks by an O(logD/D) factor, where D is the number of channels. Experiments on CIFAR-10 and ImageNet classification show superior and comparable performances of WaveletNet compared to state-of-the-art models such as MobileNetV2.
Random Projection Based Representations for Learning Policies in Deterministic Atari Games
(2017)

Recent advances in sample efficient reinforcement learning algorithms in quasi-deterministic environments highlight the requirement for computationally inexpensive visual representations. Here we investigate non-parametric dimensionality reduction techniques based on random linear transformations and we provide empirical evidence on the importance of high-variance projections using sparse random matrices in the context of episodic controllers learning deterministic policies. We also propose a novel Maximum-Variance Random Projection and improve on the performance of the original Model-Free Episodic Control results with respect to both sample efficiency and final average score.
Unsupervised Meta-Learning for Reinforcement Learning
(2018)

Meta-learning is a powerful tool that builds on multi-task learning to learn how to quickly adapt a model to new tasks. In the context of reinforcement learning, meta-learning algorithms can acquire reinforcement learning procedures to solve new problems more efficiently by meta-learning prior tasks. The performance of meta-learning algorithms critically depends on the tasks available for meta-training: in the same way that supervised learning algorithms generalize best to test points drawn from the same distribution as the training points, meta-learning methods generalize best to tasks from the same distribution as the meta-training tasks. In effect, meta-reinforcement learning offloads the design burden from algorithm design to task design. If we can automate the process of task design as well, we can devise a meta-learning algorithm that is truly automated. In this work, we take a step in this direction, proposing a family of unsupervised meta-learning algorithms for reinforcement learning. We describe a general recipe for unsupervised meta-reinforcement learning, and describe an effective instantiation of this approach based on a recently proposed unsupervised exploration technique and model-agnostic meta-learning. We also discuss practical and conceptual considerations for developing unsupervised meta-learning methods. Our experimental results demonstrate that unsupervised meta-reinforcement learning effectively acquires accelerated reinforcement learning procedures without the need for manual task design, significantly exceeds the performance of learning from scratch, and even matches performance of meta-learning methods that use hand-specified task distributions.
A Survey on Visual Approaches for Analyzing Scientific Literature and Patents
(2017)

The increasingly large number of available writings describing technical and scientific progress, calls for advanced analytic tools for their efficient analysis. This is true for many application scenarios in science and industry and for different types of writings, comprising patents and scientific articles. Despite important differences between patents and scientific articles, both have a variety of common characteristics that lead to similar search and analysis tasks. However, the analysis and visualization of these documents is not a trivial task due to the complexity of the documents as well as the large number of possible relations between their multivariate attributes. In this survey, we review interactive analysis and visualization approaches of patents and scientific articles, ranging from exploration tools to sophisticated mining methods. In a bottom-up approach, we categorize them according to two aspects: (a) data type (text, citations, authors, metadata, and combinations thereof), and (b) task (finding and comparing single entities, seeking elementary relations, finding complex patterns, and in particular temporal patterns, and investigating connections between multiple behaviours). Finally, we identify challenges and research directions in this area that ask for future investigations.
Automatic number plate recognition system using modified stroke width transform
(2013)

Automatic number plate recognition(ANPR) techniques occupy a significant role in intelligent traffic management systems. Most of the existing ANPR systems do not perform well under conditions like high vehicle speed, varying illuminations, changing back ground etc. In this paper we propose an ANPR technique which efficiently solves the above issues using the stroke width transform. In our method, first we pre-process the image to remove blurring artifacts. Then the significant edges in the image are detected and a new image is formed by grouping the connecting rays. This is followed by morphological processing which detects the letters in the image. Then an appropriate Optical Character Recognizer (OCR) recovers the final result. Experimental results show that the proposed method work effectively under varying light conditions and even in the presence of shadows.
Colour image segmentation using the self-organizing map and adaptive resonance theory
(2005)

We propose a new competitive-learning neural network model for colour image segmentation. The model, which is based on the adaptive resonance theory (ART) of Carpenter and Grossberg and on the self-organizing map (SOM) of Kohonen, overcomes the limitations of (i) the stability–plasticity trade-offs in neural architectures that employ ART; and (ii) the lack of on-line learning property in the SOM. In order to explore the generation of a growing feature map using ART and to motivate the main contribution, we first present a preliminary experimental model, SOMART, based on Fuzzy ART. Then we propose the new model, SmART, that utilizes a novel lateral control of plasticity to resolve the stability–plasticity problem. SmART has been experimentally found to perform well in RGB colour space, and is believed to be more coherent than Fuzzy ART. q 2005 Elsevier Ltd. All rights reserved.
Deep Learning: A Generic Approach for Extreme Condition Traffic Forecasting
(2017)

Traffic forecasting is a vital part of intelligent transportation systems. It becomes particularly challenging due to short-term (e.g., accidents, constructions) and long-term (e.g., peak-hour, seasonal, weather) traffic patterns. While most of the previously proposed techniques focus on normal condition forecasting, a single framework for extreme condition traffic forecasting does not exist. To address this need, we propose to take a deep learning approach. We build a deep neural network based on long short term memory (LSTM) units. We apply Deep LSTM to forecast peak-hour traffic and manage to identify unique characteristics of the traffic data. We further improve the model for postaccident forecasting with Mixture Deep LSTM model. It jointly models the normal condition traffic and the pattern of accidents. We evaluate our model on a realworld large-scale traffic dataset in Los Angeles. When trained end-to-end with suitable regularization, our approach achieves 30%-50% improvement over baselines. We also demonstrate a novel technique to interpret the model with signal stimulation. We note interesting observations from the trained neural network.
Weighted cluster ensembles: Methods and analysis
(2009)

Cluster ensembles offer a solution to challenges inherent to clustering arising from its ill-posed nature. Cluster ensembles can provide robust and stable solutions by leveraging the consensus across multiple clustering results, while averaging out emergent spurious structures that arise due to the various biases to which each participating algorithm is tuned. In this article, we address the problem of combining multiple weighted clusters that belong to different subspaces of the input space. We leverage the diversity of the input clusterings in order to generate a consensus partition that is superior to the participating ones. Since we are dealing with weighted clusters, our consensus functions make use of the weight vectors associated with the clusters. We demonstrate the effectiveness of our techniques by running experiments with several real datasets, including high-dimensional text data. Furthermore, we investigate in depth the issue of diversity and accuracy for our ensemble methods. Our analysis and experimental results show that the proposed techniques are capable of producing a partition that is as good as or better than the best individual clustering.
Local Probabilistic Models for Link Prediction
(2007)

One of the core tasks in social network analysis is to predict the formation of links (i.e. various types of relationships) over time. Previous research has generally represented the social network in the form of a graph and has leveraged topological and semantic measures of similarity between two nodes to evaluate the probability of link formation. Here we introduce a novel local probabilistic graphical model method that can scale to large graphs to estimate the joint co-occurrence probability of two nodes. Such a probability measure captures information that is not captured by either topological measures or measures of semantic similarity, which are the dominant measures used for link prediction. We demonstrate the effectiveness of the co-occurrence probability feature by using it both in isolation and in combination with other topological and semantic features for predicting co-authorship collaborations on real datasets.