SoroushVahidi/scidocs huggingface dataset:
A near-threshold 7T SRAM cell with high write and read margins and low write time for sub-20 nm FinFET technologies
(2015)

In this paper, a 7T SRAM cell with differential write and single ended read operations working in the near-threshold region is proposed. The structure is based on modifying a recently proposed 5T cell which uses high and low VTH transistors to improve the read and write stability. To enhance the read static noise margin (RSNM) while keeping the high write margin and low write time, an extra access transistor is used and the threshold voltages of the SRAM transistors are appropriately set. In addition, to maintain the low leakage power of the cell and increase the Ion/Ioff ratio of its access transistors, a high VTH transistor is used in the pull down path of the cell. To assess the efficacy of the proposed cell, its characteristics are compared with those of 5T, 6T, 8T, and 9T SRAM cells. The characteristics are obtained from HSPICE simulations using 20 nm, 16 nm, 14 nm, 10 nm, and 7 nm FinFET technologies assuming a supply voltage of 500 mV. The results reveal high write and read margins, the highest Ion/Ioff ratio, a fast write, and ultra-low leakage power in the hold “0” state for the cell. Therefore, the suggested 7T cell may be considered as one of the better design choices for both high performance and low power applications. Also, the changes of cell parameters when the temperature rises from 40 1C to 100 1C are investigated. Finally, the write margin as well as the read and hold SNMs of the cell in the presence of the process variations are studied at two supply voltages of 400 mV and 500 mV. The study shows that the proposed cell meets the required cell sigma value (6σ) under all conditions. & 2015 Elsevier B.V. All rights reserved.
Integrating Grid-Based and Topological Maps for Mobile Robot Navigation
(1996)

Research on mobile robot navigation has produced two major paradigms for mapping indoor environments: grid-based and topological. While grid-based methods produce accurate metric maps, their complexity often prohibits efficient planning and problem solving in large-scale indoor environments. Topological maps, on the other hand, can be used much more efficiently, yet accurate and consistent topological maps are considerably difficult to learn in large-scale environments. This paper describes an approach that integrates both paradigms: grid-based and topological. Grid-based maps are learned using artificial neural networks and Bayesian integration. Topological maps are generated on top of the grid-based maps, by partitioning the latter into coherent regions. By combining both paradigms—grid-based and topological—, the approach presented here gains the best of both worlds: accuracy/consistency and efficiency. The paper gives results for autonomously operating a mobile robot equipped with sonar sensors in populated multi-room envi-
Seasonal Effect on Tree Species Classification in an Urban Environment Using Hyperspectral Data, LiDAR, and an Object-Oriented Approach
(2008)

The objective of the current study was to analyze the seasonal effect on differentiating tree species in an urban environment using multi-temporal hyperspectral data, Light Detection And Ranging (LiDAR) data, and a tree species database collected from the field. Two Airborne Imaging Spectrometer for Applications (AISA) hyperspectral images were collected, covering the Summer and Fall seasons. In order to make both datasets spatially and spectrally compatible, several preprocessing steps, including band reduction and a spatial degradation, were performed. An object-oriented classification was performed on both images using training data collected randomly from the tree species database. The seven dominant tree species (Gleditsia triacanthos, Acer saccharum, Tilia Americana, Quercus palustris, Pinus strobus and Picea glauca) were used in the classification. The results from this analysis did not show any major difference in overall accuracy between the two seasons. Overall accuracy was approximately 57% for the Summer dataset and 56% for the Fall dataset. However, the Fall dataset provided more consistent results for all tree species while the Summer dataset had a few higher individual class accuracies. Further, adding LiDAR into the classification improved the results by 19% for both fall and summer. This is mainly due to the removal of shadow effect and the addition of elevation data to separate low and high vegetation.
Gamification solutions for software acceptance: A comparative study of Requirements Engineering and Organizational Behavior techniques
(2017)

Gamification is a powerful paradigm and a set of best practices used to motivate people carrying out a variety of ICT-mediated tasks. Designing gamification solutions and applying them to a given ICT system is a complex and expensive process (in time, competences and money) as software engineers have to cope with heterogeneous stakeholder requirements on one hand, and Acceptance Requirements on the other, that together ensure effective user participation and a high level of system utilization. As such, gamification solutions require significant analysis and design as well as suitable supporting tools and techniques. In this work, we compare concepts, tools and techniques for gamification design drawn from Software Engineering and Human and Organizational Behaviors. We conduct a comparison by applying both techniques to the specific Meeting Scheduling exemplar used extensively in the Requirements Engineering literature.
Organic food: buying more safety or just peace of mind? A critical review of the literature.
(2006)

Consumer concern over the quality and safety of conventional food has intensified in recent years, and primarily drives the increasing demand for organically grown food, which is perceived as healthier and safer. Relevant scientific evidence, however, is scarce, while anecdotal reports abound. Although there is an urgent need for information related to health benefits and/or hazards of food products of both origins, generalized conclusions remain tentative in the absence of adequate comparative data. Organic fruits and vegetables can be expected to contain fewer agrochemical residues than conventionally grown alternatives; yet, the significance of this difference is questionable, inasmuch as actual levels of contamination in both types of food are generally well below acceptable limits. Also, some leafy, root, and tuber organic vegetables appear to have lower nitrate content compared with conventional ones, but whether or not dietary nitrate indeed constitutes a threat to human health is a matter of debate. On the other hand, no differences can be identified for environmental contaminants (e.g. cadmium and other heavy metals), which are likely to be present in food from both origins. With respect to other food hazards, such as endogenous plant toxins, biological pesticides and pathogenic microorganisms, available evidence is extremely limited preventing generalized statements. Also, results for mycotoxin contamination in cereal crops are variable and inconclusive; hence, no clear picture emerges. It is difficult, therefore, to weigh the risks, but what should be made clear is that 'organic' does not automatically equal 'safe.' Additional studies in this area of research are warranted. At our present state of knowledge, other factors rather than safety aspects seem to speak in favor of organic food.
Induction of pluripotent stem cells from fibroblast cultures
(2007)

Clinical application of embryonic stem (ES) cells faces difficulties regarding use of embryos, as well as tissue rejection after implantation. One way to circumvent these issues is to generate pluripotent stem cells directly from somatic cells. Somatic cells can be reprogrammed to an embryonic-like state by the injection of a nucleus into an enucleated oocyte or by fusion with ES cells. However, little is known about the mechanisms underlying these processes. We have recently shown that the combination of four transcription factors can generate ES-like pluripotent stem cells directly from mouse fibroblast cultures. The cells, named induced pluripotent stem (iPS) cells, can be differentiated into three germ layers and committed to chimeric mice. Here we describe detailed methods and tips for the generation of iPS cells.
Foundations of Augmented Cognition: Neuroergonomics and Operational Neuroscience
(2016)

This work evaluates the feasibility of a motor imagery-based optical brain-computer interface (BCI) for humanoid robot control. The functional near-infrared spectroscopy (fNIRS) based BCI-robot system developed in this study operates through a high-level control mechanism where user specifies a target action through the BCI and the robot performs the set of micro operations necessary to fulfill the identified goal. For the evaluation of the system, four motor imagery tasks (left hand, right hand, left foot, and right foot) were mapped to operational commands (turn left, turn right, walk forward, walk backward) that were sent to the robot in real time to direct the robot navigating a small room. An ecologically valid offline analysis with minimal preprocessing shows that seven subjects could achieve an average accuracy of 32.5 %. This was increased to 43.6 % just by including calibration data from the same day of the robot control using the same cap setup, indicating that day-of calibration following the initial training may be important for BCI control.
Understanding Availability
(2003)

This paper addresses a simple, yet fundamental question in the design of peer-to-peer systems: What does it mean when we say “availability” and how does this understanding impact the engineering of practical systems? We argue that existing measurements and models do not capture the complex timevarying nature of availability in today’s peer-to-peer environments. Further, we show that unforeseen methodological shortcomings have dramatically biased previous analyses of this phenomenon. As the basis of our study, we empirically characterize the availability of a large peer-to-peer system over a period of 7 days, analyze the dependence of the underlying availability distributions, measure host turnover in the system, and discuss how these results may affect the design of high-availability peer-to-peer services.
Photonic Crystal-Structures for THz Vacuum Electron Devices
(2015)

The technology of photonic crystals (PhCs) is investigated here to improve the performance of THz vacuum electron devices. Compared with conventional metallic waveguides, the PhC arrangement alleviates typical issues in THz vacuum electron tubes, i.e. difficult vacuum pumping process and assembling, and improves the input/output coupling. A slow-wave structure (SWS) based on a corrugated waveguide assisted by PhC lateral walls and the efficient design of a PhC coupler for sheet-beam interaction devices are demonstrated. Based on the proposed technology, a backward-wave oscillator (BWO) is designed in this paper. Cold parameters of the novel PhC SWS as well as 3-D particle-in-cell simulations of the overall BWO are investigated, obtaining more than 70-mW-peak output power at 0.650 THz for beam voltage of 11 kV and beam current of 6 mA.
Presenting system uncertainty in automotive UIs for supporting trust calibration in autonomous driving
(2013)

To investigate the impact of visualizing car uncertainty on drivers' trust during an automated driving scenario, a simulator study was conducted. A between-group design experiment with 59 Swedish drivers was carried out where a continuous representation of the uncertainty of the car's ability to autonomously drive during snow conditions was displayed to one of the groups, whereas omitted for the control group. The results show that, on average, the group of drivers who were provided with the uncertainty representation took control of the car faster when needed, while they were, at the same time, the ones who spent more time looking at other things than on the road ahead. Thus, drivers provided with the uncertainty information could, to a higher degree, perform tasks other than driving without compromising with driving safety. The analysis of trust shows that the participants who were provided with the uncertainty information trusted the automated system less than those who did not receive such information, which indicates a more proper trust calibration than in the control group.
Kernel-Based Learning of Hierarchical Multilabel Classification Models
(2006)

We present a kernel-based algorithm for hierarchical text c lassification where the documents are allowed to belong to more than one category at a time. The clas sification model is a variant of the Maximum Margin Markov Network framework, where the classifi cation hierarchy is represented as a Markov tree equipped with an exponential family defined o n the edges. We present an efficient optimization algorithm based on incremental conditi onal gradient ascent in single-example subspaces spanned by the marginal dual variables. The optim ization is facilitated with a dynamic programming based algorithm that computes best update dire ctions in the feasible set. Experiments show that the algorithm can feasibly optimize t raining sets of thousands of examples and classification hierarchies consisting of hundreds of nodes. Training of the full hierarchical model is as efficient as training independent SVM-light clas sifiers for each node. The algorithm’s predictive accuracy was found to be competitive with other r ecently introduced hierarchical multicategory or multilabel classification learning algorithms .
A novel ultra-wideband 80 GHz FMCW radar system for contactless monitoring of vital signs
(2015)

In this paper an ultra-wideband 80 GHz FMCW-radar system for contactless monitoring of respiration and heart rate is investigated and compared to a standard monitoring system with ECG and CO2 measurements as reference. The novel FMCW-radar enables the detection of the physiological displacement of the skin surface with submillimeter accuracy. This high accuracy is achieved with a large bandwidth of 10 GHz and the combination of intermediate frequency and phase evaluation. This concept is validated with a radar system simulation and experimental measurements are performed with different radar sensor positions and orientations.
Optimizing F-measure: A Tale of Two Approaches
(2012)

F-measures are popular performance metrics, particularly for tasks with imbalanced data sets. Algorithms for learning to maximize F-measures follow two approaches: the empirical utility maximization (EUM) approach learns a classifier having optimal performance on training data, while the decision-theoretic approach learns a probabilistic model and then predicts labels with maximum expected F-measure. In this paper, we investigate the theoretical justifications and connections for these two approaches, and we study the conditions under which one approach is preferable to the other using synthetic and real datasets. Given accurate models, our results suggest that the two approaches are asymptotically equivalent given large training and test sets. Nevertheless, empirically, the EUM approach appears to be more robust against model misspecification, and given a good model, the decision-theoretic approach appears to be better for handling rare classes and a common domain adaptation scenario.
Diffusion maps for high-dimensional single-cell analysis of differentiation data
(2015)

MOTIVATION
Single-cell technologies have recently gained popularity in cellular differentiation studies regarding their ability to resolve potential heterogeneities in cell populations. Analyzing such high-dimensional single-cell data has its own statistical and computational challenges. Popular multivariate approaches are based on data normalization, followed by dimension reduction and clustering to identify subgroups. However, in the case of cellular differentiation, we would not expect clear clusters to be present but instead expect the cells to follow continuous branching lineages.


RESULTS
Here, we propose the use of diffusion maps to deal with the problem of defining differentiation trajectories. We adapt this method to single-cell data by adequate choice of kernel width and inclusion of uncertainties or missing measurement values, which enables the establishment of a pseudotemporal ordering of single cells in a high-dimensional gene expression space. We expect this output to reflect cell differentiation trajectories, where the data originates from intrinsic diffusion-like dynamics. Starting from a pluripotent stage, cells move smoothly within the transcriptional landscape towards more differentiated states with some stochasticity along their path. We demonstrate the robustness of our method with respect to extrinsic noise (e.g. measurement noise) and sampling density heterogeneities on simulated toy data as well as two single-cell quantitative polymerase chain reaction datasets (i.e. mouse haematopoietic stem cells and mouse embryonic stem cells) and an RNA-Seq data of human pre-implantation embryos. We show that diffusion maps perform considerably better than Principal Component Analysis and are advantageous over other techniques for non-linear dimension reduction such as t-distributed Stochastic Neighbour Embedding for preserving the global structures and pseudotemporal ordering of cells.


AVAILABILITY AND IMPLEMENTATION
The Matlab implementation of diffusion maps for single-cell data is available at https://www.helmholtz-muenchen.de/icb/single-cell-diffusion-map.


CONTACT
fbuettner.phys@gmail.com, fabian.theis@helmholtz-muenchen.de


SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
Algorithms for the Assignment and Transiortation Troblems*
(1957)

In this paper we presen algorithms for the solution of the general assignment and transportation problems. In Section 1, a statement of the algorithm for the assignment problem appears, along with a proof for the correctness of the algorithm. The remarks which constitute the proof are incorporated parenthetically into the statement of the algorithm. Following this appears a discussion of certain theoretical aspects of the problem. In Section 2, the algorithm is generalized to one for the transportation problem. The algorithm of that section is stated as concisely as possible, with theoretical remarks omitted.
Segmentation of Dermoscopy Images Using Wavelet Networks
(2013)

This paper introduces a new approach for the segmentation of skin lesions in dermoscopic images based on wavelet network (WN). The WN presented here is a member of fixed-grid WNs that is formed with no need of training. In this WN, after formation of wavelet lattice, determining shift and scale parameters of wavelets with two screening stage and selecting effective wavelets, orthogonal least squares algorithm is used to calculate the network weights and to optimize the network structure. The existence of two stages of screening increases globality of the wavelet lattice and provides a better estimation of the function especially for larger scales. R, G, and B values of a dermoscopy image are considered as the network inputs and the network structure formation. Then, the image is segmented and the skin lesions exact boundary is determined accordingly. The segmentation algorithm were applied to 30 dermoscopic images and evaluated with 11 different metrics, using the segmentation result obtained by a skilled pathologist as the ground truth. Experimental results show that our method acts more effectively in comparison with some modern techniques that have been successfully used in many medical imaging problems.
Global cancer statistics.
(1999)

The global burden of cancer continues to increase largely because of the aging and growth of the world population alongside an increasing adoption of cancer-causing behaviors, particularly smoking, in economically developing countries. Based on the GLOBOCAN 2008 estimates, about 12.7 million cancer cases and 7.6 million cancer deaths are estimated to have occurred in 2008; of these, 56% of the cases and 64% of the deaths occurred in the economically developing world. Breast cancer is the most frequently diagnosed cancer and the leading cause of cancer death among females, accounting for 23% of the total cancer cases and 14% of the cancer deaths. Lung cancer is the leading cancer site in males, comprising 17% of the total new cancer cases and 23% of the total cancer deaths. Breast cancer is now also the leading cause of cancer death among females in economically developing countries, a shift from the previous decade during which the most common cause of cancer death was cervical cancer. Further, the mortality burden for lung cancer among females in developing countries is as high as the burden for cervical cancer, with each accounting for 11% of the total female cancer deaths. Although overall cancer incidence rates in the developing world are half those seen in the developed world in both sexes, the overall cancer mortality rates are generally similar. Cancer survival tends to be poorer in developing countries, most likely because of a combination of a late stage at diagnosis and limited access to timely and standard treatment. A substantial proportion of the worldwide burden of cancer could be prevented through the application of existing cancer control knowledge and by implementing programs for tobacco control, vaccination (for liver and cervical cancers), and early detection and treatment, as well as public health campaigns promoting physical activity and a healthier dietary intake. Clinicians, public health professionals, and policy makers can play an active role in accelerating the application of such interventions globally.
Border detection in dermoscopy images using statistical region merging.
(2008)

BACKGROUND
As a result of advances in skin imaging technology and the development of suitable image processing techniques, during the last decade, there has been a significant increase of interest in the computer-aided diagnosis of melanoma. Automated border detection is one of the most important steps in this procedure, because the accuracy of the subsequent steps crucially depends on it.


METHODS
In this article, we present a fast and unsupervised approach to border detection in dermoscopy images of pigmented skin lesions based on the statistical region merging algorithm.


RESULTS
The method is tested on a set of 90 dermoscopy images. The border detection error is quantified by a metric in which three sets of dermatologist-determined borders are used as the ground-truth. The proposed method is compared with four state-of-the-art automated methods (orientation-sensitive fuzzy c-means, dermatologist-like tumor extraction algorithm, meanshift clustering, and the modified JSEG method).


CONCLUSION
The results demonstrate that the method presented here achieves both fast and accurate border detection in dermoscopy images.
Lesion border detection in dermoscopy images
(2009)

BACKGROUND
Dermoscopy is one of the major imaging modalities used in the diagnosis of melanoma and other pigmented skin lesions. Due to the difficulty and subjectivity of human interpretation, computerized analysis of dermoscopy images has become an important research area. One of the most important steps in dermoscopy image analysis is the automated detection of lesion borders.


METHODS
In this article, we present a systematic overview of the recent border detection methods in the literature paying particular attention to computational issues and evaluation aspects.


CONCLUSION
Common problems with the existing approaches include the acquisition, size, and diagnostic distribution of the test image set, the evaluation of the results, and the inadequate description of the employed methods. Border determination by dermatologists appears to depend upon higher-level knowledge, therefore it is likely that the incorporation of domain knowledge in automated methods will enable them to perform better, especially in sets of images with a variety of diagnoses.