SoroushVahidi/scidocs huggingface dataset:
Collaborative matrix factorization mechanism for group recommendation in big data-based library systems
(2018)

Purpose –Academic groups are designed specifically for researchers. A group recommendation procedure is essential to support scholars’ research-based social activities. However, group recommendation methods are rarely applied in online libraries and they often suffer from scalability problem in big data context. The purpose of this paper is to facilitate academic group activities in big data-based library systems by recommending satisfying articles for academic groups. Design/methodology/approach – The authors propose a collaborative matrix factorization (CoMF) mechanism and implement paralleled CoMF under Hadoop framework. Its rationale is collaboratively decomposing researcher-article interaction matrix and group-article interaction matrix. Furthermore, three extended models of CoMF are proposed. Findings – Empirical studies on CiteULike data set demonstrate that CoMF and three variants outperform baseline algorithms in terms of accuracy and robustness. The scalability evaluation of paralleled CoMF shows its potential value in scholarly big data environment. Research limitations/implications – The proposed methods fill the gap of group-article recommendation in online libraries domain. The proposed methods have enriched the group recommendation methods by considering the interaction effects between groups and members. The proposed methods are the first attempt to implement group recommendation methods in big data contexts. Practical implications – The proposed methods can improve group activity effectiveness and information shareability in academic groups, which are beneficial to membership retention and enhance the service quality of online library systems. Furthermore, the proposed methods are applicable to big data contexts and make library system services more efficient. Social implications – The proposed methods have potential value to improve scientific collaboration and research innovation. Originality/value – The proposed CoMF method is a novel group recommendation method based on the collaboratively decomposition of researcher-article matrix and group-article matrix. The process indirectly reflects the interaction between groups and members, which accords with actual library environments and provides an interpretable recommendation result.
High-Resolution Frequency-Wavenumber Spectrum Analysis
(2005)

The output of an array bfoensors is considered to be a homogeneous random field. In this case there is a spectral representation for this field, similar to that for stationary random processes, which consists of a superposition of traveling waves. The frequencywavenumber power spectral density provides the mean-square value for the amplitudes of these waves and is of considerable importance in the analysis of propagating waves by means of an array of sensors. The conventional method of frequency-wavenumber power spectral density estimation uses a fixed wavenumber window and its resolution is determined esserrtially by& beam pattern of the array of sensors. A high-resolution method-of estimation is introduced which employs a wavenumber windoar whose shape changes and is a function of the wavenumber at which an estimate is obtained. It is shown that the wavenumber resolution of this method is considerably better than that of the conventional method. Application of these results is given to seismic data obtained from the large apenure seismic array located in eastern Montana. In addition, the application of the high-resolution method to other areas, such as radar, sonar, and radio astronomy, is indicated.
Handwritten Digit Recognition with a Back-Propagation Network
(1989)

We present an application of back-propagation networks to handwritten digit recognition. Minimal preprocessing of the data was required, but architecture of the network was highly constrained and specifically designed for the task. The input of the network consists of normalized images of isolated digits. The method has 1 % error rate and about a 9% reject rate on zipcode digits provided by the U.S. Postal Service.
An RIG-I-Like RNA Helicase Mediates Antiviral RNAi Downstream of Viral siRNA Biogenesis in Caenorhabditis elegans
(2009)

Dicer ribonucleases of plants and invertebrate animals including Caenorhabditis elegans recognize and process a viral RNA trigger into virus-derived small interfering RNAs (siRNAs) to guide specific viral immunity by Argonaute-dependent RNA interference (RNAi). C. elegans also encodes three Dicer-related helicase (drh) genes closely related to the RIG-I-like RNA helicase receptors which initiate broad-spectrum innate immunity against RNA viruses in mammals. Here we developed a transgenic C. elegans strain that expressed intense green fluorescence from a chromosomally integrated flock house virus replicon only after knockdown or knockout of a gene required for antiviral RNAi. Use of the reporter nematode strain in a feeding RNAi screen identified drh-1 as an essential component of the antiviral RNAi pathway. However, RNAi induced by either exogenous dsRNA or the viral replicon was enhanced in drh-2 mutant nematodes, whereas exogenous RNAi was essentially unaltered in drh-1 mutant nematodes, indicating that exogenous and antiviral RNAi pathways are genetically distinct. Genetic epistatic analysis shows that drh-1 acts downstream of virus sensing and viral siRNA biogenesis to mediate specific antiviral RNAi. Notably, we found that two members of the substantially expanded subfamily of Argonautes specific to C. elegans control parallel antiviral RNAi pathways. These findings demonstrate both conserved and unique strategies of C. elegans in antiviral defense.
A Case Study on Implementing False Data Injection Attacks Against Nonlinear State Estimation
(2016)

Smart grid aims to improve control and monitoring routines to ensure reliable and efficient supply of electricity. The rapid advancements in information and communication technologies of Supervisory Control And Data Acquisition (SCADA) networks, however, have resulted in complex cyber physical systems. This added complexity has broadened the attack surface of power-related applications, amplifying their susceptibility to cyber threats. A particular class of system integrity attacks against the smart grid is False Data Injection (FDI). In a successful FDI attack, an adversary compromises the readings of grid sensors in such a way that errors introduced into estimates of state variables remain undetected. This paper presents an end-to-end case study of how to instantiate real FDI attacks to the Alternating Current (AC) --nonlinear-- State Estimation (SE) process. The attack is realized through firmware modifications of the microprocessor-based remote terminal systems, falsifying the data transmitted to the SE routine, and proceeds regardless of perfect or imperfect knowledge of the current system state. The case study concludes with an investigation of an attack on the IEEE 14 bus system using load data from the New York Independent System Operator (NYISO).
A wall climbing robot for tank inspection. An autonomous prototype
(2010)

This paper describes a solution to a mobile climbing robot on magnetic wheels, designed for inspecting exterior oil tank surfaces made of metal sheets. A mechanical design has been developed which presents a practical solution without an umbilical cord. The inspection system has been developed based on client/server architecture. The robot runs a client application and a remote PC executes the server functions. They will both allow any necessary inspections to be performed simultaneously by more than one robot. A sensorial system and a data fusion strategy to estimate the absolute robot position is proposed to allow the robot to navigate autonomously. The graphical monitoring of the robot position in the remote PC (server application) provides the operator with the possibility of controlling the robot, even in situations in which the operator visibility of an area tank is very low or inexistent. Previous experiments have demonstrated the mechanical system's robustness. These experiments consist of robot trajectory measurements and the comparison to a motion kinematic model.
Discovering Parallel Text from the World Wide Web
(2004)

Parallel corpus is a rich linguistic resource for various multilingual text management tasks, including crosslingual text retrieval, multilingual computational linguistics and multilingual text mining. Constructing a parallel corpus requires effective alignment of parallel documents. In this paper, we develop a parallel page identification system for identifying and aligning parallel documents from the World Wide Web. The system crawls the Web to fetch potentially parallel multilingual Web documents using a Web spider. To determine the parallelism between potential document pairs, two modules are developed. First, a filename comparison module is used to check filename resemblance. Second, a content analysis module is used to measure the semantic similarity. The experiment conducted to a multilingual Web site shows the effectiveness of the system.
Racial Faces in-the-Wild: Reducing Racial Bias by Deep Unsupervised Domain Adaptation
(2018)

Despite of the progress achieved by deep learning in face recognition (FR), more and more people find that racial bias explicitly degrades the performance in realistic FR systems. Facing the fact that existing training and testing databases consist of almost Caucasian subjects, there are still no independent testing databases to evaluate racial bias and even no training databases and methods to reduce it. To facilitate the research towards conquering those unfair issues, this paper contributes a new dataset called Racial Faces in-the-Wild (RFW) database with two important uses, 1) racial bias testing: four testing subsets, namely Caucasian, Asian, Indian and African, are constructed, and each contains about 3000 individuals with 6000 image pairs for face verification, 2) racial bias reducing: one labeled training subset with Caucasians and three unlabeled training subsets with Asians, Indians and Africans are offered to encourage FR algorithms to transfer recognition knowledge from Caucasians to other races. For we all know, RFW is the first database for measuring racial bias in FR algorithms. After proving the existence of domain gap among different races and the existence of racial bias in FR algorithms, we further propose a deep information maximization adaptation network (IMAN) to bridge the domain gap, and comprehensive experiments show that the racial bias could be narrowed-down by our algorithm.
PUSH: A Pipelined Reconstruction I/Of or Erasure-Coded Storage Clusters
(2015)

A key design goal of erasure-coded storage clusters is to minimize reconstruction time, which in turn leads to high reliability by reducing vulnerability window size. PULL-Rep and PULL-Sur are two existing reconstruction schemes based on PULL-type transmission, where a rebuilding node initiates reconstruction by sending a set of read requests to surviving nodes to retrieve surviving blocks. To eliminate the transmission bottleneck of replacement nodes in PULL-Rep and mitigate the extra overhead caused by noncontiguous disk access in PULL-Sur, we incorporate PUSH-type transmissions to node reconstruction, where the reconstruction procedure is divided into multiple tasks accomplished by surviving nodes in a pipelining manner. We also propose two PUSH-based reconstruction schemes (i.e., PUSH-Rep and PUSH-Sur), which can not only exploit the I/O parallelism of PULL-Sur, but also maintain sequential I/O accesses inherited from PULL-Rep. We build four reconstruction-time models to study the reconstruction process and estimate the reconstruction time of the four schemes in large-scale storage clusters. We implement a proof-of-concept prototype where the four reconstruction schemes are deployed and quantitatively evaluated. Experimental results show that the PUSH-based reconstruction schemes outperform the PULL-based counterparts. In a real-world (9,6)RS-coded storage cluster, PUSH-Rep speeds up the reconstruction time by a factor of 5.76 compared with PULL-Rep; PUSH-Sur accelerates the reconstruction by a factor of 1.85 relative to PULL-Sur.
Writing a narrative biomedical review: considerations for authors, peer reviewers, and editors
(2011)

Review articles comprehensively covering a specific topic are crucial for successful research and academic projects. Most editors consider review articles for special and regular issues of journals. Writing a review requires deep knowledge and understanding of a field. The aim of this review is to analyze the main steps in writing a narrative biomedical review and to consider points that may increase the chances of success. We performed a comprehensive search through MEDLINE, EMBASE, Scopus, and Web of Science using the following keywords: review of the literature, narrative review, title, abstract, authorship, ethics, peer review, research methods, medical writing, scientific writing, and writing standards. Opinions expressed in the review are also based on personal experience as authors, peer reviewers, and editors.
Ranking-Based Automatic Seed Selection and Noise Reduction for Weakly Supervised Relation Extraction
(2018)

This paper addresses the tasks of automatic seed selection for bootstrapping relation extraction, and noise reduction for distantly supervised relation extraction. We first point out that these tasks are related. Then, inspired by ranking relation instances and patterns computed by the HITS algorithm, and selecting cluster centroids using the K-means, LSA, or NMF method, we propose methods for selecting the initial seeds from an existing resource, or reducing the level of noise in the distantly labeled data. Experiments show that our proposed methods achieve a better performance than the baseline systems in both tasks.
Biomedical question answering: A survey
(2010)

OBJECTIVES
In this survey, we reviewed the current state of the art in biomedical QA (Question Answering), within a broader framework of semantic knowledge-based QA approaches, and projected directions for the future research development in this critical area of intersection between Artificial Intelligence, Information Retrieval, and Biomedical Informatics.


MATERIALS AND METHODS
We devised a conceptual framework within which to categorize current QA approaches. In particular, we used "semantic knowledge-based QA" as a category under which to subsume QA techniques and approaches, both corpus-based and knowledge base (KB)-based, that utilize semantic knowledge-informed techniques in the QA process, and we further classified those approaches into three subcategories: (1) semantics-based, (2) inference-based, and (3) logic-based. Based on the framework, we first conducted a survey of open-domain or non-biomedical-domain QA approaches that belong to each of the three subcategories. We then conducted an in-depth review of biomedical QA, by first noting the characteristics of, and resources available for, biomedical QA and then reviewing medical QA approaches and biological QA approaches, in turn. The research articles reviewed in this paper were found and selected through online searches.


RESULTS
Our review suggested the following tasks ahead for the future research development in this area: (1) Construction of domain-specific typology and taxonomy of questions (biological QA), (2) Development of more sophisticated techniques for natural language (NL) question analysis and classification, (3) Development of effective methods for answer generation from potentially conflicting evidences, (4) More extensive and integrated utilization of semantic knowledge throughout the QA process, and (5) Incorporation of logic and reasoning mechanisms for answer inference.


CONCLUSION
Corresponding to the growth of biomedical information, there is a growing need for QA systems that can help users better utilize the ever-accumulating information. Continued research toward development of more sophisticated techniques for processing NL text, for utilizing semantic knowledge, and for incorporating logic and reasoning mechanisms, will lead to more useful QA systems.
Automatic license plate recognition using extracted features
(2016)

Automatic License Plate Recognition (ALPR) systems are employed for detection and recognition of license plate/number plate of vehicles. The performance of existing systems is well below the desired level. In this perspective, there is a definite need to propose a system to overcome the limitations of currently available systems. A new approach is being introduced in this paper for fast and efficient implementation of ALPR system. In this approach, the vertical edge detection algorithm is applied and removes unwanted edges by image normalization technique. The LP region is extracted by incorporating statistical and morphological image processing techniques. For character recognition, the template matching is employed for optical character recognition (OCR). The algorithm is tested on 500 real time images, which are acquired under different illumination conditions and from different scenes. Overall efficiency of the proposed method is 84.8% and the execution time is less than 0.5sec.
Analysis and design of a high-efficiency multistage Doherty power amplifier for wireless communications
(2005)

A comprehensive analysis of a multistage Doherty amplifier, which can be used to achieve higher efficiency at a lower output power level compared to the classical Doherty amplifier, is presented. Generalized design equations that explain the operation of a three-stage Doherty amplifier, which can be easily extended to an N-stage Doherty amplifier, are derived. In addition, the optimum device periphery, which minimizes AM-AM distortion for perfect Doherty amplifier operation, is analyzed. For the first time, a multistage Doherty power amplifier that meets wide-band code-division multiple-access (WCDMA) requirements is demonstrated. The designed power amplifier exhibits a power-added efficiency (PAE) of 42% at 6-dB output power backoff and 27% at 12-dB output power backoff. These PAEs are more than 2/spl times/ and 7/spl times/ better, respectively, than that of a single-stage linear power amplifier at the same output power backoff levels. The power amplifier is capable of delivering up to 33 dBm of output power, and has a maximum adjacent channel power leakage ratio of -35 and -47 dBc at 5- and 10-MHz offset, respectively. To the best of the authors' knowledge, these represent the best reported results of a Doherty amplifier for WCDMA application in the 1.95-GHz band to date.
Multicast Outage Probability and Transmission Capacity of Multihop Wireless Networks
(2011)

Multicast transmission, wherein the same packet must be delivered to multiple receivers, is an important aspect of sensor and tactical networks and has several distinctive traits as opposed to more commonly studied unicast networks. Specially, these include 1) identical packets must be delivered successfully to several nodes, 2) outage at any receiver requires the packet to be retransmitted at least to that receiver, and 3) the multicast rate is dominated by the receiver with the weakest link in order to minimize outage and retransmission. A first contribution of this paper is the development of a tractable multicast model and throughput metric that captures each of these key traits in a multicast wireless network. We utilize a Poisson cluster process (PCP) consisting of a distinct Poisson point process (PPP) for the transmitters and receivers, and then define the multicast transmission capacity (MTC) as the maximum achievable multicast rate per transmission attempt times the maximum intensity of multicast clusters under decoding delay and multicast outage constraints. A multicast cluster is a contiguous area over which a packet is multicasted, and to reduce outage it can be tessellated into v smaller regions of multicast. The second contribution of the paper is the analysis of several key aspects of this model, for which we develop the following main result. Assuming τ/v transmission attempts are allowed for each tessellated region in a multicast cluster, we show that the MTC is Θ(ρkxlog(k)vy) where ρ, x and y are functions of τ and v depending on the network size and intensity, and k is the average number of the intended receivers in a cluster. We derive {ρ, x, y} for a number of regimes of interest, and also show that an appropriate number of retransmissions can significantly enhance the MTC.
An Ultra Low Energy 12-bit Rate-Resolution Scalable SAR ADC for Wireless Sensor Nodes
(2007)

A resolution-rate scalable ADC for micro-sensor networks is described. Based on the successive approximation register (SAR) architecture, this ADC has two resolution modes: 12 bit and 8 bit, and its sampling rate is scalable, at a constant figure-of-merit, from 0-100 kS/s and 0-200 kS/s, respectively. At the highest performance point (i.e., 12 bit, 100 kS/s), the entire ADC (including digital, analog, and reference power) consumes 25 muW from a 1-V supply. The ADC's CMRR is enhanced by common-mode independent sampling and passive auto-zero reference generation. The efficiency of the comparator is improved by an analog offset calibrating latch, and the preamplifier settling time is relaxed by self-timing the bit-decisions. Prototyped in a 0.18-mum, 5M2P CMOS process, the ADC, at 12 bit, 100 kS/s, achieves a Nyquist SNDR of 65 dB (10.55 ENOB) and an SFDR of 71 dB. Its INL and DNL are 0.68 LSB and 0.66 LSB, respectively
Discovery of Collocation Patterns: from Visual Words to Visual Phrases
(2007)

A visual word lexicon can be constructed by clustering primitive visual features, and a visual object can be described by a set of visual words. Such a "bag-of-words" representation has led to many significant results in various vision tasks including object recognition and categorization. However, in practice, the clustering of primitive visual features tends to result in synonymous visual words that over-represent visual patterns, as well as polysemous visual words that bring large uncertainties and ambiguities in the representation. This paper aims at generating a higher-level lexicon, i.e. visual phrase lexicon, where a visual phrase is a meaningful spatially co-occurrent pattern of visual words. This higher-level lexicon is much less ambiguous than the lower-level one. The contributions of this paper include: (1) a fast and principled solution to the discovery of significant spatial co-occurrent patterns using frequent itemset mining; (2) a pattern summarization method that deals with the compositional uncertainties in visual phrases; and (3) a top-down refinement scheme of the visual word lexicon by feeding back discovered phrases to tune the similarity measure through metric learning.
Topic Detection and Tracking Pilot Study Final Report
(1998)

Topic Detection and Tracking (TDT) is a DARPA-sponsored initiative to investigate the state of the art in finding and following new events in a stream of broadcast news stories. The TDT problem consists of three major tasks: (1) segmenting a stream of data, especially recognized speech, into distinct stories; (2) identifying those news stories that are the first to discuss a new event occurring in the news; and (3) given a small number of sample news stories about an event, finding all following stories in the stream. The TDT Pilot Study ran from September 1996 through October 1997. The primary participants were DARPA, Carnegie Mellon University, Dragon Systems, and the University of Massachusetts at Amherst. This report summarizes the findings of the pilot study. The TDT work continues in a new project involving larger training and test corpora, more active participants, and a more broadly defined notion of “topic” than was used in the pilot study. The following individuals participated in the research reported.