SoroushVahidi/scidocs huggingface dataset:
Automatic Whole Brain MRI Segmentation of the Developing Neonatal Brain
(2014)

Magnetic resonance (MR) imaging is increasingly being used to assess brain growth and development in infants. Such studies are often based on quantitative analysis of anatomical segmentations of brain MR images. However, the large changes in brain shape and appearance associated with development, the lower signal to noise ratio and partial volume effects in the neonatal brain present challenges for automatic segmentation of neonatal MR imaging data. In this study, we propose a framework for accurate intensity-based segmentation of the developing neonatal brain, from the early preterm period to term-equivalent age, into 50 brain regions. We present a novel segmentation algorithm that models the intensities across the whole brain by introducing a structural hierarchy and anatomical constraints. The proposed method is compared to standard atlas-based techniques and improves label overlaps with respect to manual reference segmentations. We demonstrate that the proposed technique achieves highly accurate results and is very robust across a wide range of gestational ages, from 24 weeks gestational age to term-equivalent age.
A 35.7–64.2 GHz low power Miller Divider with Weak Inversion Mixer in 65 nm CMOS
(2016)

A 60 GHz wide locking range Miller divider is presented in this letter. To enhance the locking range of divider and save power consumption, we proposed a Miller divider based on weak inversion mixer. The proposed Miller divider is implemented in 65 nm CMOS and exhibits 57% locking range from 35.7 to 64.2 GHz at an input power of 0 dBm while consuming 1.6-mW dc power at 0.4 V supply. Compared to the previously reported CMOS millimeter wave frequency dividers, the proposed divider achieves the widest fractional bandwidth without any frequency tuning mechanism.
Identification of Refused Bequest Code Smells
(2013)

Accumulated technical debt can be alleviated by means of refactoring application aiming at architectural improvement. A prerequisite for wide scale refactoring application is the automated identification of the corresponding refactoring opportunities, or code smells. One of the major architectural problems that has received limited attention is the so called 'Refused Bequest' which refers to inappropriate use of inheritance in object-oriented systems. This code smell occurs when subclasses do not take advantage of the inherited behavior, implying that replacement by delegation should be used instead. In this paper we propose a technique for the identification of Refused Bequest code smells whose major novelty lies in the intentional introduction of errors in the inherited methods. The essence of inheritance is evaluated by exercising the system's functionality through the corresponding unit tests in order to reveal whether inherited methods are actually employed by clients. Based on the results of this approach and other structural information, an indication of the smell strength on a 'thermometer' is obtained. The proposed approach has been implemented as an Eclipse plug in.
Effectivecollaborative movie recommender system using asymmetric user similarity and matrix factorization
(2016)

Recommender systems are becoming ubiquitous these days to advise important products to users. Conventional collaborative filtering methods suffer from sparsity, scalability, and cold start problem. In this work, we have implemented a novel and improved method of recommending movies by combining the asymmetric method of calculating similarity with matrix factorization and Tyco (typicality-based collaborative filtering). The asymmetric method describes that similarity of user A with B is not the similar as the similarity of B with A. Matrix factorization shows items (movies) as well as users by vectors of factors derived from rating pattern of items (movies). In Tyco clusters of movies of the same genre are created, and typicality degree (a measure of how much a movie belongs to that genre) of each movie in that cluster was considered and subsequently of each user in a genre was calculated. The similarity between users was calculated by using their typicality in genres rather than co-rated items. We had combined these methods and employed Pearson correlation coefficient method to calculate similarity to optimize results when compared to cosine similarity, Linear Regression to make predictions that gave better results. In this research work stochastic gradient descent is also used for optimization and regularization to avoid the problem of over fitting. All these approaches together provide better prediction and handle problems of sparsity, cold start, and scalability well as compared to conventional methods. Experimental results confirm that our HYBRTyco gives improved results than Tyco regarding mean absolute error (MAE)and mean absolute percentage error (MAPE), especially on the sparse dataset.
An Analysis of Black-Box Web Application Security Scanners against Stored SQL Injection
(2011)

Web application security scanners are a compilation of various automated tools put together and used to detect security vulnerabilities in web applications. Recent research has shown that detecting stored SQL injection, one of the most critical web application vulnerabilities, is a major challenge for black-box scanners. In this paper, we evaluate three state of art black-box scanners that support detecting stored SQL injection vulnerabilities. We developed our custom test bed that challenges the scanners capability regarding stored SQL injections. The results show that existing vulnerabilities are not detected even when these automated scanners are taught to exploit the vulnerability. The weaknesses of black-box scanners identified reside in many areas: crawling, input values and attack code selection, user login, analysis of server replies, miss-categorization of findings, and the automated process functionality. Because of the poor detection rate, we discuss the different phases of black-box scanners' scanning cycle and propose a set of recommendations that could enhance the detection rate of stored SQL injection vulnerabilities.
Intrusion Detection System using Support Vector Machine and Decision Tree
(2010)

Support Vector Machines (SVM) are the classifiers which were originally designed for binary classification. The classification applications can solve multi-class problems. Decision-tree-based support vector machine which combines support vector machines and decision tree can be an effective way for solving multi-class problems. This method can decrease the training and testing time, increasing the efficiency of the system. The different ways to construct the binary trees divides the data set into two subsets from root to the leaf until every subset consists of only one class. The construction order of binary tree has great influence on the classification performance. In this paper we are studying an algorithm, Tree structured multiclass SVM, which has been used for classifying data. This paper proposes the decision tree based algorithm to construct multiclass intrusion detection system.
DESIGNING A LAYOUT USING THE MODIFIED TRIANGLE METHOD , AND GENETIC ALGORITHMS
(2013)

This paper describes the use of genetic algorithms (GA) for solving the facility layout problem (FLP) within manufacturing systems’ design. The paper considers a specific heuristic layout planning method, known as the modified triangle method. This method seeks for an optimal layout solution based on the degrees of flows between workstations. The search for an optimal solution is extremely time-consuming and not suitable for larger systems; therefore we have developed a system based on evolutionary computation. Our paper presents a system, based on GA, and the results obtained regarding several numerical cases from the literature. We propose the usage of this system by presenting numerous advantages over other methods of solving FLP for problem representation and evolutionary computation for solution search. (Received in September 2012, accepted in June 2013. This paper was with the authors 2 months for 2 revisions.)
Mapping Unseen Words to Task-Trained Embedding Spaces
(2016)

Education University of California, Berkeley (2008-2013) Ph.D. in Computer Science Thesis: Surface Web Semantics for Structured Natural Language Processing Advisor: Dan Klein. Committee members: Dan Klein, Marti Hearst, Line Mikkelsen, Nelson Morgan University of California, Berkeley (2012) Master of Science (M.S.) in Computer Science Thesis: An All-Fragments Grammar for Simple and Accurate Parsing Advisor: Dan Klein Indian Institute of Technology, Kanpur (2004-2008) Bachelor of Technology (B.Tech.) in Computer Science and Engineering GPA: 3.96/4.00 (Institute and Department Rank 2) Cornell University (Summer 2007) CS490 (Independent Research and Reading) GPA: 4.00/4.00 Advisors: Lillian Lee, Claire Cardie
Interpreting and Unifying Outlier Scores
(2011)

Outlier scores provided by different outlier models differ widely in their meaning, range, and contrast between different outlier models and, hence, are not easily comparable or interpretable. We propose a unification of outlier scores provided by various outlier models and a translation of the arbitrary “outlier factors” to values in the range [0, 1] interpretable as values describing the probability of a data object of being an outlier. As an application, we show that this unification facilitates enhanced ensembles for outlier detection.
DRAFT: COMMENTS WELCOME BUT PLEASE DO NOT QUOTE
(2007)

The Experimental Study of Adaptive User Interfaces Pat Langley (langley@isle.org) Institute for the Study of Learning and Expertise 2164 Staunton Court, Palo Alto, CA 94306 Michael Fehling (fehling@odc.stanford.edu) Organizational Dynamics Center, EES/OR Department Stanford University, Stanford, CA 94305 Abstract In this paper we examine some issues that arise in the experimental evaluation of adaptive user interfaces, which are computational decision aids that use machine learning to improve their interaction with users. We begin by reviewing the notion of an adaptive interface and presenting examples for a number of application areas. After this, we discuss plausible dependent measures of their behavior, including solution speed, solution quality, user satisfaction, and predictive accuracy. Next we turn to independent variables that are likely to in uence these measures, including the number of user interactions and characteristics of the system, the user, and the task at hand. In closing, we comment on the role that experimentation plays in the larger scienti c process.
Learning to reinforcement learn
(2016)

In recent years deep reinforcement learning (RL) systems have attained superhuman performance in a number of challenging task domains. However, a major limitation of such applications is their demand for massive amounts of training data. A critical present objective is thus to develop deep RL methods that can adapt rapidly to new tasks. In the present work we introduce a novel approach to this challenge, which we refer to as deep meta-reinforcement learning. Previous work has shown that recurrent networks can support meta-learning in a fully supervised context. We extend this approach to the RL setting. What emerges is a system that is trained using one RL algorithm, but whose recurrent dynamics implement a second, quite separate RL procedure. This second, learned RL algorithm can differ from the original one in arbitrary ways. Importantly, because it is learned, it is configured to exploit structure in the training domain. We unpack these points in a series of seven proof-of-concept experiments, each of which examines a key aspect of deep meta-RL. We consider prospects for extending and scaling up the approach, and also point out some potentially important implications for neuroscience.
BLINKS: ranked keyword searches on graphs
(2007)

Query processing over graph-structured data is enjoying a growing number of applications. A top-k keyword search query on a graph finds the top k answers according to some ranking criteria, where each answer is a substructure of the graph containing all query keywords. Current techniques for supporting such queries on general graphs suffer from several drawbacks, e.g., poor worst-case performance, not taking full advantage of indexes, and high memory requirements. To address these problems, we propose BLINKS, a bi-level indexing and query processing scheme for top-k keyword search on graphs. BLINKS follows a search strategy with provable performance bounds, while additionally exploiting a bi-level index for pruning and accelerating the search. To reduce the index space, BLINKS partitions a data graph into blocks: The bi-level index stores summary information at the block level to initiate and guide search among blocks, and more detailed information for each block to accelerate search within blocks. Our experiments show that BLINKS offers orders-of-magnitude performance improvement over existing approaches.
Modeling and control of a three-port DC-DC converter for PV-battery systems
(2015)

This paper presents modeling and decoupled control design for an isolated three-port DC-DC converter (TPC), which interfaces a photovoltaic (PV) panel, a rechargeable battery, and an isolated load. A small signal model is derived from the state-space equations of the TPC. Based on the model, two decoupled controllers are designed to control the power flows of the two sources and the load voltage independently. Experimental studies are performed to verify that the two controllers are capable of regulating the power flows of the PV panel and the battery while maintaining a constant output voltage for the TPC.
Brain of the African elephant (Loxodonta africana): neuroanatomy from magnetic resonance images.
(2005)

We acquired magnetic resonance images of the brain of an adult African elephant, Loxodonta africana, in the axial and parasagittal planes and produced anatomically labeled images. We quantified the volume of the whole brain (3,886.7 cm3) and of the neocortical and cerebellar gray and white matter. The white matter-to-gray matter ratio in the elephant neocortex and cerebellum is in keeping with that expected for a brain of this size. The ratio of neocortical gray matter volume to corpus callosum cross-sectional area is similar in the elephant and human brains (108 and 93.7, respectively), emphasizing the difference between terrestrial mammals and cetaceans, which have a very small corpus callosum relative to the volume of neocortical gray matter (ratio of 181-287 in our sample). Finally, the elephant has an unusually large and convoluted hippocampus compared to primates and especially to cetaceans. This may be related to the extremely long social and chemical memory of elephants.
Convolutional auto-encoder for image denoising of ultra-low-dose CT
(2017)

OBJECTIVES
The purpose of this study was to validate a patch-based image denoising method for ultra-low-dose CT images. Neural network with convolutional auto-encoder and pairs of standard-dose CT and ultra-low-dose CT image patches were used for image denoising. The performance of the proposed method was measured by using a chest phantom.


MATERIALS AND METHODS
Standard-dose and ultra-low-dose CT images of the chest phantom were acquired. The tube currents for standard-dose and ultra-low-dose CT were 300 and 10 mA, respectively. Ultra-low-dose CT images were denoised with our proposed method using neural network, large-scale nonlocal mean, and block-matching and 3D filtering. Five radiologists and three technologists assessed the denoised ultra-low-dose CT images visually and recorded their subjective impressions of streak artifacts, noise other than streak artifacts, visualization of pulmonary vessels, and overall image quality.


RESULTS
For the streak artifacts, noise other than streak artifacts, and visualization of pulmonary vessels, the results of our proposed method were statistically better than those of block-matching and 3D filtering (p-values < 0.05). On the other hand, the difference in the overall image quality between our proposed method and block-matching and 3D filtering was not statistically significant (p-value = 0.07272). The p-values obtained between our proposed method and large-scale nonlocal mean were all less than 0.05.


CONCLUSION
Neural network with convolutional auto-encoder could be trained using pairs of standard-dose and ultra-low-dose CT image patches. According to the visual assessment by radiologists and technologists, the performance of our proposed method was superior to that of large-scale nonlocal mean and block-matching and 3D filtering.
Collaborative GAN Sampling
(2019)

Generative adversarial networks (GANs) have shown great promise in generating complex data such as images. A standard practice in GANs is to discard the discriminator after training and use only the generator for sampling. However, this loses valuable information of real data distribution learned by the discriminator. In this work, we propose a collaborative sampling scheme between the generator and discriminator for improved data generation. Guided by the discriminator, our approach refines generated samples through gradient-based optimization, shifting the generator distribution closer to the real data distribution. Additionally, we present a practical discriminator shaping method that can further improve the sample refinement process. Orthogonal to existing GAN variants, our proposed method offers a new degree of freedom in GAN sampling. We demonstrate its efficacy through experiments on synthetic data and image generation tasks.
Neural correlates of mindfulness meditation-related anxiety relief.
(2014)

Anxiety is the cognitive state related to the inability to control emotional responses to perceived threats. Anxiety is inversely related to brain activity associated with the cognitive regulation of emotions. Mindfulness meditation has been found to regulate anxiety. However, the brain mechanisms involved in meditation-related anxiety relief are largely unknown. We employed pulsed arterial spin labeling MRI to compare the effects of distraction in the form of attending to the breath (ATB; before meditation training) to mindfulness meditation (after meditation training) on state anxiety across the same subjects. Fifteen healthy subjects, with no prior meditation experience, participated in 4 d of mindfulness meditation training. ATB did not reduce state anxiety, but state anxiety was significantly reduced in every session that subjects meditated. Meditation-related anxiety relief was associated with activation of the anterior cingulate cortex, ventromedial prefrontal cortex and anterior insula. Meditation-related activation in these regions exhibited a strong relationship to anxiety relief when compared to ATB. During meditation, those who exhibited greater default-related activity (i.e. posterior cingulate cortex) reported greater anxiety, possibly reflecting an inability to control self-referential thoughts. These findings provide evidence that mindfulness meditation attenuates anxiety through mechanisms involved in the regulation of self-referential thought processes.
Statistical mechanics of complex networks
(2001)

Complex networks describe a wide range of systems in nature and society. Frequently cited examples include the cell, a network of chemicals linked by chemical reactions, and the Internet, a network of routers and computers connected by physical links. While traditionally these systems have been modeled as random graphs, it is increasingly recognized that the topology and evolution of real networks are governed by robust organizing principles. This article reviews the recent advances in the field of complex networks, focusing on the statistical mechanics of network topology and dynamics. After reviewing the empirical data that motivated the recent interest in networks, the authors discuss the main models and analytical tools, covering random graphs, small-world and scale-free networks, the emerging theory of evolving networks, and the interplay between topology and the network’s robustness against failures and attacks.
Emergence of Scaling in Random Networks
(1999)

www.sciencemag.org (this information is current as of September 11, 2008 ): The following resources related to this article are available online at http://www.sciencemag.org/cgi/content/full/286/5439/509 version of this article at: including high-resolution figures, can be found in the online Updated information and services, found at: can be related to this article A list of selected additional articles on the Science Web sites http://www.sciencemag.org/cgi/content/full/286/5439/509#related-content http://www.sciencemag.org/cgi/content/full/286/5439/509#otherarticles , 3 of which can be accessed for free: cites 11 articles This article 2718 article(s) on the ISI Web of Science. cited by This article has been http://www.sciencemag.org/cgi/content/full/286/5439/509#otherarticles 95 articles hosted by HighWire Press; see: cited by This article has been http://www.sciencemag.org/cgi/collection/physics Physics : subject collections This article appears in the following http://www.sciencemag.org/about/permissions.dtl in whole or in part can be found at: this article permission to reproduce of this article or about obtaining reprints Information about obtaining
Human Behaviour and the Principle of Least Effort: an Introduction to Human Ecology
(1949)

Some people may be laughing when looking at you reading in your spare time. Some may be admired of you. And some may want be like you who have reading hobby. What about your own feel? Have you felt right? Reading is a need and a hobby at once. This condition is the on that will make you feel that you must read. If you know are looking for the book enPDFd human behavior and the principle of least effort an introduction to human ecology as the choice of reading, you can find here.
Evolutionary games and spatial chaos
(1992)

MUCH attention has been given to the Prisoners' Dilemma as a metaphor for the problems surrounding the evolution of coopera-tive behaviour1–6. This work has dealt with the relative merits of various strategies (such as tit-for-tat) when players who recognize each other meet repeatedly, and more recently with ensembles of strategies and with the effects of occasional errors. Here we neglect all strategical niceties or memories of past encounters, considering only two simple kinds of players: those who always cooperate and those who always defect. We explore the consequences of placing these players in a two-dimensional spatial array: in each round, every individual 'plays the game' with the immediate neighbours; after this, each site is occupied either by its original owner or by one of the neighbours, depending on who scores the highest total in that round; and so to the next round of the game. This simple, and purely deterministic, spatial version of the Prisoners' Dilemma, with no memories among players and no strategical elaboration, can generate chaotically changing spatial patterns, in which cooperators and defectors both persist indefinitely (in fluctuating proportions about predictable long-term averages). If the starting configurations are sufficiently symmetrical, these ever-changing sequences of spatial patterns—dynamic fractals—can be extraordinarily beautiful, and have interesting mathematical properties. There are potential implications for the dynamics of a wide variety of spatially extended systems in physics and biology.