[23] Kamal raj Kanakarajan, Bhuvana Kundumani, and Malaikannan Sankarasubbu. BioELECTRA: Pretrained Biomedical text Encoder using Discriminators. In Proceedings of the 20th Workshop on Biomedical Language Processing, pages 143-154, Online, June 2021. Association for Computational Linguistics. doi: 10.18653/v1/2021.bionlp-1.16. URL https://aclanthology.org/2021.bionlp-1.16.
[24] Yifan Peng, Qingyu Chen, and Zhiyong Lu. An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining, May 2020. URL http://arxiv.org/abs/2005.02799.arXiv:2005.02799 [cs].
[25] Leon Weber, Mario Sänger, Jannes Münchmeyer, Maryam Habibi, Ulf Leser, and Alan Akbik. HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition. Bioinformatics, 37(17):2792-2794, September 2021. ISSN 1367-4803. doi: 10.1093/bioinformatics/btab042. URL https://doi.org/10.1093/bioinformatics/btab042.
[26] Jason Alan Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Myungsun Kang, Ruisi Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen Bach, Stella Biderman, Mario Sanger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, Jose David Posada, John Michael Giorgi, Karthik Rangasai Sivaraman, Marc Pamies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Michio Broad, Yanis Labrak, Shlok S. Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, and Benjamin Beilharz. BigBio: A Framework for Data-Centric Biomedical Natural Language Processing. September 2022. URL https://openreview.net/forum?id=81QDn9zTQ1W.
[27] Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii, and Sophia Ananiadou. Open-domain Anatomical Entity Mention Detection. In Proceedings of the Workshop on Detecting Structure in Scholarly Discourse, pages 27-36, Jeju Island, Korea, July 2012. Association for Computational Linguistics. URL https://aclanthology.org/W12-4304.
[28] Sampo Pyysalo and Sophia Ananiadou. Anatomical entity mention recognition at literature scale. Bioinformatics (Oxford, England), 30(6):868-875, March 2014. ISSN 1367-4811. doi: 10.1093/bioinformatics/btt580.
[29] Sampo Pyysalo, Tomoko Ohta, and Sophia Ananiadou. Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013. In Proceedings of the BioNLP Shared Task 2013 Workshop, pages 58-66, Sofia, Bulgaria, August 2013. Association for Computational Linguistics. URL https://aclanthology.org/W13-2008.
[30] Mariana Neves, Alexander Damaschun, Andreas Kurtz, and Ulf Leser. Annotating and evaluating text for stem cell research. January 2012.
[31] Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, and Robert Stevens. bioNerDS: exploring bioinformatics' database and software use through literature mining. BMC Bioinformatics, 14(1):194, June 2013. ISSN 1471-2105. doi: 10.1186/1471-2105-14-194. URL https://doi.org/10.1186/1471-2105-14-194.
[32] Caifan Du, Johanna Cohoon, Patrice Lopez, and James Howison. Softcite dataset: A dataset of software mentions in biomedical and economic research publications. Journal of the Association for Information Science and Technology, 72(7):870-884, 2021. ISSN 2330-1643. doi: 10.1002/asi.24454. URL https://onlinelibrary.wiley.com/doi/abs/10.1002/asi.24454. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/asi.24454.
[33] David Schindler, Felix Bensmann, Stefan Dietze, and Frank Krüger. SoMeSci- A 5 Star Open Data Gold Standard Knowledge Graph of Software Mentions in Scientific Articles, August 2021. URL http://arxiv.org/abs/2108.09070. arXiv:2108.09070 [cs].
[34] Ana-Maria Istrate, Donghui Li, Dario Taraborelli, Michaela Torkar, Boris Veytsman, and Ivana Williams. A large dataset of software mentions in the biomedical literature, September 2022. URL http://arxiv.org/abs/2209.00693. arXiv:2209.00693 [cs, q-bio].