data	Noise level	Method	PearsonR	SpearmanR	Norm Fro N2	Norm inf N2
Tree	0.1	Diffusion Map	0.748 ± 0.125	0.733 ± 0.111	0.113 ± 0.012	0.161 ± 0.019
Tree	0.1	Heat-Geo	0.943 ± 0.037	0.94 ± 0.037	0.113 ± 0.012	0.161 ± 0.019
Tree	0.1	Heat-PHATE	0.872 ± 0.04	0.83 ± 0.061	0.113 ± 0.012	0.161 ± 0.019
Tree	0.1	PHATE	0.564 ± 0.039	0.469 ± 0.052	0.113 ± 0.011	0.161 ± 0.018
Tree	0.1	Rand-Geo	0.868 ± 0.017	0.85 ± 0.019	0.113 ± 0.012	0.161 ± 0.019
Tree	0.1	Shortest Path	0.937 ± 0.037	0.931 ± 0.041	0.113 ± 0.012	0.161 ± 0.019
Tree	0.1	TSNE	0.847 ± 0.034	0.824 ± 0.045	0.082 ± 0.012	0.123 ± 0.022
Tree	0.1	UMAP	0.692 ± 0.058	0.671 ± 0.047	0.107 ± 0.012	0.153 ± 0.019
Tree	0.1	Euclidean	0.809 ± 0.017	0.778 ± 0.024	0.113 ± 0.012	0.161 ± 0.019
Tree	0.5	Diffusion Map	0.656 ± 0.054	0.653 ± 0.057	0.113 ± 0.012	0.161 ± 0.019
Tree	0.5	Heat-Geo	0.806 ± 0.019	0.787 ± 0.009	0.113 ± 0.012	0.161 ± 0.019
Tree	0.5	Heat-PHATE	0.746 ± 0.024	0.744 ± 0.031	0.113 ± 0.012	0.161 ± 0.019
Tree	0.5	PHATE	0.766 ± 0.023	0.746 ± 0.03	0.113 ± 0.011	0.161 ± 0.018
Tree	0.5	Rand-Geo	0.721 ± 0.024	0.694 ± 0.024	0.113 ± 0.012	0.161 ± 0.019
Tree	0.5	Shortest Path	0.765 ± 0.01	0.738 ± 0.011	0.113 ± 0.012	0.161 ± 0.019
Tree	0.5	TSNE	0.795 ± 0.046	0.766 ± 0.055	0.083 ± 0.012	0.128 ± 0.018
Tree	0.5	UMAP	0.783 ± 0.06	0.757 ± 0.054	0.11 ± 0.011	0.157 ± 0.018
Tree	0.5	Euclidean	0.704 ± 0.02	0.672 ± 0.038	0.113 ± 0.012	0.161 ± 0.019
Tree	1.0	Diffusion Map	0.538 ± 0.05	0.471 ± 0.089	0.113 ± 0.012	0.161 ± 0.019
Tree	1.0	Heat-Geo	0.613 ± 0.025	0.58 ± 0.036	0.113 ± 0.012	0.161 ± 0.019
Tree	1.0	Heat-PHATE	0.614 ± 0.02	0.571 ± 0.044	0.113 ± 0.012	0.161 ± 0.019
Tree	1.0	PHATE	0.615 ± 0.017	0.572 ± 0.036	0.113 ± 0.011	0.161 ± 0.018
Tree	1.0	Rand-Geo	0.487 ± 0.064	0.465 ± 0.071	0.113 ± 0.012	0.161 ± 0.019
Tree	1.0	Shortest Path	0.542 ± 0.047	0.514 ± 0.06	0.113 ± 0.012	0.161 ± 0.019
Tree	1.0	TSNE	0.583 ± 0.042	0.553 ± 0.045	0.086 ± 0.011	0.135 ± 0.017
Tree	1.0	UMAP	0.595 ± 0.032	0.562 ± 0.036	0.111 ± 0.011	0.158 ± 0.019
Tree	1.0	Euclidean	0.502 ± 0.051	0.479 ± 0.064	0.113 ± 0.012	0.161 ± 0.019
Tree high	0.1	Diffusion Map	0.754 ± 0.049	0.741 ± 0.057	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.1	Heat-Geo	0.956 ± 0.014	0.957 ± 0.015	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.1	Heat-PHATE	0.831 ± 0.082	0.764 ± 0.115	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.1	PHATE	0.484 ± 0.036	0.4 ± 0.028	0.267 ± 0.02	0.369 ± 0.025
Tree high	0.1	Rand-Geo	0.817 ± 0.013	0.774 ± 0.022	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.1	Shortest Path	0.958 ± 0.014	0.956 ± 0.017	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.1	TSNE	0.89 ± 0.039	0.866 ± 0.043	0.233 ± 0.021	0.327 ± 0.026
Tree high	0.1	UMAP	0.8 ± 0.031	0.764 ± 0.034	0.259 ± 0.021	0.36 ± 0.028
Tree high	0.1	Euclidean	0.878 ± 0.042	0.859 ± 0.051	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.5	Diffusion Map	0.706 ± 0.124	0.705 ± 0.113	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.5	Heat-Geo	0.932 ± 0.022	0.928 ± 0.023	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.5	Heat-PHATE	0.923 ± 0.023	0.921 ± 0.022	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.5	PHATE	0.844 ± 0.048	0.79 ± 0.07	0.267 ± 0.02	0.369 ± 0.025
Tree high	0.5	Rand-Geo	0.875 ± 0.042	0.855 ± 0.048	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.5	Shortest Path	0.917 ± 0.025	0.91 ± 0.03	0.267 ± 0.021	0.369 ± 0.026
Tree high	0.5	TSNE	0.922 ± 0.035	0.91 ± 0.045	0.237 ± 0.021	0.334 ± 0.027
Tree high	0.5	UMAP	0.823 ± 0.054	0.803 ± 0.041	0.261 ± 0.021	0.361 ± 0.026
Tree high	0.5	Euclidean	0.819 ± 0.048	0.799 ± 0.053	0.267 ± 0.021	0.369 ± 0.026
Tree high	1.0	Diffusion Map	0.598 ± 0.117	0.613 ± 0.103	0.267 ± 0.021	0.369 ± 0.026
Tree high	1.0	Heat-Geo	0.794 ± 0.066	0.805 ± 0.049	0.267 ± 0.021	0.369 ± 0.026
Tree high	1.0	Heat-PHATE	0.826 ± 0.064	0.823 ± 0.067	0.267 ± 0.021	0.369 ± 0.026
Tree high	1.0	PHATE	0.827 ± 0.059	0.82 ± 0.062	0.267 ± 0.02	0.369 ± 0.025
Tree high	1.0	Rand-Geo	0.71 ± 0.043	0.686 ± 0.045	0.267 ± 0.021	0.369 ± 0.026
Tree high	1.0	Shortest Path	0.771 ± 0.064	0.753 ± 0.07	0.267 ± 0.021	0.369 ± 0.026
Tree high	1.0	TSNE	0.84 ± 0.066	0.821 ± 0.074	0.238 ± 0.02	0.335 ± 0.026
Tree high	1.0	UMAP	0.853 ± 0.051	0.839 ± 0.057	0.264 ± 0.021	0.365 ± 0.026
Tree high	1.0	Euclidean	0.683 ± 0.067	0.665 ± 0.07	0.267 ± 0.021	0.369 ± 0.026