Saravanan666/pypi-org huggingface dataset:
Package: vstat
v-statisticImplements the v-statistic, a measure that compares the estimation
accuracy of the ordinary least squares estimator against a random benchmark.See the paper here:http://www.ncbi.nlm.nih.gov/m/pubmed/23661222/which features
and implementation in R.I also wrote a Julia version, seehttps://github.com/dostodabsi/V.jl.install and runinstall with` [sudo] pip install vstat `import with` import vstat `and calculate v with` vstat.vstat(120, 4, .05) `or calculate necessary (total n, n per predictor) for a specific v with` vstat.sample_size(3, .05,v=.8)`
Package: vstcompile
Lib for quick formattingsetup.pyin projects. Moved fromvstutilsprojects for easyer integration.Quick startInstall package viapip install vstcompileCreaterequirements.txtandsetup.pyin your project:importosfromvstcompileimportload_requirements,make_setup,find_packages# allow setup.py to be run from any pathos.chdir(os.path.normpath(os.path.join(os.path.abspath(__file__),os.pardir)))ext_list=[...someextentionsimportpathswith`*.py,*.cor*.pyx`extentions...]make_setup(packages=find_packages(exclude=['tests']+ext_list),ext_modules_list=ext_list,include_package_data=True,install_requires=load_requirements('requirements.txt'))Runpython setup.py compileto compile and pack dist-package.Add requirement topyproject.tomland enjoy!RequirementsIf you want to use Sphinx in projects, you should install package with sphinx packages.If you want to use github release, install it with extrareleaseand use commandgithubrelease:pipinstallvstcompile[release]pythonsetup.pygithubreleaseLicenseVST Compile is licensed under the terms of the Apache License 2.0.
See the file “LICENSE” for more information.Copyright 2018-2023 VST Consulting
Package: vs.tdi
vs.tdi  - Tabbed document interface for Plone 4vs.tdi provides a supplementary views for folderish object (implementing
IATFolder).  The new view provides a tabbed interface for accessing content
inside the folder (supported content-types: Document, NewsItem, Event). The
standardtdi_viewretrieves all HTML to be rendered with one HTTP request.
Thetdi_ajax_viewperforms an ajax request upon each tab change.RequirementsPlone 4InstallationThe standard Plone installation procedure applies (addvs.tdito your
buildout configuration, re-run buildout and add install it within your Plone site).Licencevs.tdi is published under the GNU Public Licence V2 (GPL 2)AuthorsAndreas JungZOPYX Ltd.info@zopyx.comwww.zopyx.comVeit SchieleVeit Schiele communications GmbHkontakt@veit-schiele.dewww.veit-schiele.deChange historyChangelog0.3.2 (19.03.2012)disabled AJAX view for now0.3.1 (19.03.2012)AJAX switcher did not work properly0.3.0 (17.03.2012)switched to CSS tabs0.2.0 (16.03.2012)various bug fixesblacklist for portal_types not participating in the tab view
functionality (folders, collections)limiting extender to the current site onlyi18nalternative tab view fetching tab content through AJAX0.1.0 (14.03.2012)Initial release
Package: vstools
vs-toolsFunctions and utils related to VapourSynthThis module is a collection of functions, utils, types, type-utils, and more aimed at helping at having a common ground between VapourSynth packages, and simplify writing them.For support you can check out theJET Discord server.How to installInstallvstoolswith the following command:pipinstallvstoolsOr if you want the latest git version, install it with this command:pipinstallgit+https://github.com/Jaded-Encoding-Thaumaturgy/vs-tools.git
Package: vstruct2
vstruct2 ( Mark II )===================Vivisect Structure Definition/Parsing Library|Build Status|Installing==========.. code::python3.4 -m pip install vstruct2vstruct2 can now be installed via pip!Additionally, a repository of existing structure definitionsis available as a seperate package named fracture.Examples========Basic Parsing-------------Simple vstruct2 byte parsing:.. code:: pythonfrom vstruct2.types import *class Foo(VStruct):def __init__(self):VStruct.__init__(self)self.bar    = uint32()self.baz    = vbytes(20)foo = Foo()# read in byts from somewhere...foo.vsParse(byts)# access struct fields by nameif foo.bar == 30:print('bar == 30!')# assign fields by namefoo.bar = 90# emit modified bytes back outbyts = bytes(foo) # same as foo.vsEmit()Parser Callbacks----------------WriteBack Bytes/Files---------------------vstruct2 supports "writeback" functionality for both files and mutablebytearray types, allowing field assignments to change the underlying fileor bytearray immediately... code:: pythonclass Foo(VStruct):def __init__(self):VStruct.__init__(self)self.bar    = uint32()self.baz    = uint32()foo = Foo()# ba is a bytearrayfoo.vsParse(ba, writeback=True)# if bar is 30, set baz to 99if foo.bar == 30:foo.baz = 99# ba bytearray has now been modifiedEnum Types----------.. |Build Status| image:: https://travis-ci.org/vivisect/vstruct2.svg:target: https://travis-ci.org/vivisect/vstruct2
Package: vstutils
A platform for easy web application generation
(PWA/Progressive Web Application and SPA/Single Page Application).
It uses OpenAPI (Swagger 2.0) schema for GUI rendering based over the REST API
and also provides the ability to generate documentation for the API based on the schema.
By default GUI based on AdminLTE dashboard and Vue templates.Review a special section in the documentation for a QuickStart development -https://vstutils.vstconsulting.net/quickstart.html.Development StatusBrowser supportSupportedbrowserslist.Implemented ProjectsPolemarch (https://polemarch.org/)SkillsChecked (Nurse recruitment app).Deigmata (Marketplace platform).LicenseVSTUtils is licensed under the terms of the Apache License 2.0.
See the file “LICENSE” for more information.Copyright 2018-2024 VST Consulting
Package: vsui
Volume Segmantics User InterfaceA GUI for the'Volume Segmantics'segmentation toolkit.This package provides an interactive web interface and API for training the PyTorch Segmentation models provided by Volume Segmantics and using these trained models to subsequently segment larger 3D datasets.The toolkit allows users with pre-labelled volumetric data to specialise models with pre-trained encoders.RequirementsAlinuxmachine running CUDA enabled PyTorch.InstallationThe package must be populated with processes in the @/vsui/ap/processes directory as set out in the developer guide. The 'vsui' command can then be used to start the server. The web interface can be accessed by navigating tolocalhost:8000in a browser on the same machine.UsageOutput will be stored in the session working directory in folders with names corresponding to the task runs. The working directory can be set using the button on the right of the top navbar.SelectingNew Taskwill open a popover with the defined processes. Selecting a process will open the settings pane. From here the required inputs can be set and the task started.A blue outline on the task pane indicates the task process is active. A grey outline indicates the process is inactive. When the process completes feedback will appear at the top of the task pane corresponding to the exit code of the process.A history of the tasks run this session will accumulate in the left navigation pane.
Package: vsutillib
These are a collection of functions and classes that I use on
my applications to made easier to maintain I decided to release
it and install as a dependency of apps like mkvbatchmultiplex.DescriptionA range of functions and classes with a variety of uses for
example:functionsgetFileList- return the files on a directory inlistof pathlib.Path objectsfindFile- find a file in the system Pathreturn a pathlib.Path object if foundgetExecutable- find executable filein PATH and the normal installation paths for Windows
and macOS for linux is like findFileclassesRunCommand- execute command in subprocess and captureoutput optionally apply regular expression searches
and apply a supplied function to receive every line
read and process them as neededConfigurationSettings- maintain a set of ConfigurationSettingsin adictionaryand saved it in xml fileutilitiesmkvrun- CLI utility to executeMKVToolNixgeneratedcommand line.MKVBatchMultiplexis a GUI implementation
of this and the main reason this module goes public.apply2files- apply a command to all files in the directoryspecified in recursive by defaultand so on…InstallationpipinstallvsutillibThis install all sub packages.You can also install any individual packages.pipinstallvsutillib-filespipinstallvsutillib-logpipinstallvsutillib-macospipinstallvsutillib-mediapipinstallvsutillib-networkpipinstallvsutillib-processingpipinstallvsutillib-vsxmlMain development platform is Windows but limited testing show they
work on Lin Linux and macOS.  The only OS specific isvsutillib.macosbut it run on other operating systems it won’t raise exception
the results will mainly beNone.Dependencieslxml4.3.3 or greater on system
XmlDB simple xml databasepymediainfo4.0 or greaterPython3.5->3.7MediaInfotested with versions 17.10->18.12.
This is only for Linux a dependency of pymediainfo.UsageImport the the library in your program::from vsutillib import files
from vsutillib import log
from vsutillib import macos
from vsutillib import media
from vsutillib import network
from vsutillib import process
from vsutillib import xmlRoadmapDocument all classes and functions.
Package: vswmc-cli
VSWMC Command-Line InterfaceInstall with pip:pip install --upgrade vswmc-cliThis will install avswmccommand on your system. Thevswmccommand has a few global options:-u USERSSA Username-p PASSWORDSSA PasswordList available simulationsvswmc simulations listThis shows the parameters that a run requires.Start a runvswmc run [--param-file PARAM_FILE] [--param PARAM=VALUE ...] -- SIMULATIONThis command returns the ID of the new run via stdout. You can use this ID to fetch the log or fetch result files.OPTIONS--param-file PARAM_FILERead parameters from a file.--param PARAM=VALUE ...Set parameters.Each simulation supports different parameters. To know what parameters you need for a particular simulation, run:vswmc simulations describe SIMULATIONList runsvswmc ps [--simulation SIMULATION] [-a, --all]OPTIONS--simulation SIMULATIONFilter on simulation.-a, --allList all runs (default shows only ongoing)Copy a result file to diskvswmc cp SRC DSTDownloads a remote result file to local disk. The source should be specified in the formatRUN:FILE. TheDSTargument can be a local file or directory.Fetch the logs of a runvswmc logs RUNList the results of a runvswmc ls [-l] RUNOPTIONS-lPrint long listingSave all results of a runvswmc save RUNSaves all result files of a run. The results of each individual task in this run are compressed and saved into a zip archive named after the model for that task.Stop one or more runsvswmc stop RUN ...Remove one or more runsvswmc rm RUN ...Create a productvswmc products create [--metadata-file FILE] [--metadata PARAM=VALUE ...] [--attach FILE ...] -- PRODUCT_TYPEOPTIONS--param-file PARAM_FILERead parameters from a file.--param PARAM=VALUE ...Set parameters.--attach FILE ...Attach product filesEXAMPLEvswmc products create --metadata test=123 --attach ../testdata/solar_wind_boundary.dat -- MHD0.1-1Returns the ID of the created product.Start a run using a product as inputvswmc run --param corona=6273ce7678eeb43c60d2eb8f \
          --param grid=test_light \
          --param cmes=examples/resources/cme_list.dat \
          -- euhforia-heliosphere-standaloneThecoronaparameter expects a product identifier.
Package: vsync
vsyncA tool to sync data between dissimilar Vertica clustersInstallation Methodsusing pipusing docker (in development)Using pip1. PrerequisitesInstall unixodbc, unixodbc-dev:RHEL based systems:sudo yum install unixODBC unixODBC-develDebian based systems:sudo apt-get install unixodbc unixodbc-devInstall official Vertica client fromhereSetup odbc.ini file with 2 DSNs, for source DB and destination DBFor example:[vertica_src]
Driver = /opt/vertica/lib64/libverticaodbc.so
Servername = 172.18.0.2
Database = my_db
Port = 5433
UserName = my_user
Password = my_pass

[vertica_dest]
Driver = /opt/vertica/lib64/libverticaodbc.so
Servername = 172.18.0.3
Database = my_db
Port = 5433
UserName = my_user
Password = my_passNote:Source DSN requires read only privileges, e.g:USAGEon schemas andSELECTon tables.Destination DSN requires write privileges, e.g:CREATEon schemas,OWNERon tables, or theDBADMINrole.Optional: with dbadmin, enable CompressNetworkDataSELECT set_config_parameter('CompressNetworkData',1);Optional: In some installations you may need to setup Vertica export subnet on both source and destination DBs:Get the subent's IP you wish to export on fromnetwork_interfaces:SELECT distinct subnet FROM network_interfaces WHERE subnet NOT LIKE '127.0%';Create new subnet in Vertica:CREATE SUBNET export WITH '<SUBNET IP HERE>'Set this subnet as default for export:ALTER DATABASE docker EXPORT ON export2. Install:pip install vsync3. Optional: Add Bash Autocompleteputeval "$(_VSYNC_COMPLETE=source vsync)"in ~/.bashrc and re-login.UsageSynopsisvsync [options] <command> [parameters]Options-f, --force(boolean):Do not ask for override confirmation.--log-file(string):Path to log file.--debug[1|2|3]:Log level.Commandssync-table-schemaSync table's schema (DDL) from source DSN to destination DSNParameters-s, --source-dsn(string) [required]Source DSN-d, --dest-dsn(string) [required]Destination DSN-t, --table(string) [required]Table to sync--dest-table(string) [optional]Destination table, default as TABLE--sync-projections / --no-projections(boolean) [optional]Sync / don't sync projections. Default: truesync-tableSync table's data from source DSN to destination DSN.Creates the table if not exists.Parameters-s, --source-dsn(string) [required]Source DSN-d, --dest-dsn(string) [required]Destination DSN-t, --table(string) [required]Table to sync--dest-table(string) [optional]Destination table. Default: as --table--sync-projections / --no-projections(boolean) [optional]Sync / don't sync projections. Default: truesync-table-partsSync table's partitions from source DSN to destination DSN.Creates the partitions if not exists.Parameters-s, --source-dsn(string) [required]Source DSN-d, --dest-dsn(string) [required]Destination DSN-t, --table(string) [required]Table to sync--dest-table(string) [optional]Destination table, default as TABLE--sync-projections / --no-projections(boolean) [optional]Sync / don't sync projections. Default: true-p, --parts(string) [optional]Comma seperated list of partitions. Default: all partitions
Package: vt100logging
vt100loggingThe originalloggingpackage lacks basic coloring of the log output. This does not help when one tries to quickly check on the real time console feed.vt100loggingis a simple wrapper aroundlogging. UsingVT100 escapecodes it colors the log feed.Supported OSTested on MS Win11 and Ubuntu.Installationpip install -U vt100loggingHow to use itSimple use casefromvt100loggingimportvt100logging_init,D,I,W,Evt100logging_init('LOGGED-MODULE',is_verbose=True)D('example DEBUG message')I('example INFO message')W('example WARNING message')E('example ERROR message')Extract more information from exceptionfromvt100loggingimportEX...exceptExceptionase:EX(e)...Store log into file on the side:fromvt100loggingimportvt100logging_init,Ivt100logging_init('my-module',store_to_log_file=True)I("Logging both to console AND log file")ContributionIf something is wrong, you can raise issueshere.CopyrightCreated by Grzegorz Grzęda. Distributed under MIT license
Package: vt102
[vt102](http://github.com/samfoo/vt102) is an in memory vt1xx terminal
emulator. It supports all the most common terminal escape sequences, including
text attributes and color.It’s an in memory vt1XX-compatible terminal emulator. TheXXstands for a
series video terminals, developed by
[DEC](http://en.wikipedia.org/wiki/Digital_Equipment_Corporation) between 1970
and 1995. The first, and most famous one, was VT100 terminal, which is now a
de-facto standard for all virtual terminal emulators.
[vt102](http://github.com/samfoo/vt102) is one such emulator.Why would you want to use a terminal emulator?Screen scraping some terminal or curses app.Writing your own graphical terminal emulator.… seriously, that’s about it.Here’s a quick example:>>> from vt102 import screen, stream
>>> st = stream()
>>> sc = screen((10, 10))
>>> print(sc)
["          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          "]
>>> sc.attach(st)
>>> st.process("Text goes here")
>>> print(sc)
["Text goes ",
 "here      ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          "]
>>> st.process("\x1b[H\x1b[K")
>>> print(sc)
["          ",
 "here      ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          ",
 "          "]
Package: vt2geojson
python-vt2geojsonDump vector tiles to GeoJSON from remote URLs or local system files.Inspired fromhttps://github.com/mapbox/vt2geojson.Installationpip install vt2geojsonUsageUsing the CLI:vt2geojson --helpMaking a GeoDataframe from a PBF vector tile file:importgeopandasasgpdimportrequestsfromvt2geojson.toolsimportvt_bytes_to_geojsonMAPBOX_ACCESS_TOKEN="*****"x=150y=194z=9url=f"https://api.mapbox.com/v4/mapbox.mapbox-streets-v6/{z}/{x}/{y}.vector.pbf?access_token={MAPBOX_ACCESS_TOKEN}"r=requests.get(url)assertr.status_code==200,r.contentvt_content=r.contentfeatures=vt_bytes_to_geojson(vt_content,x,y,z)gdf=gpd.GeoDataFrame.from_features(features)Todos:Add more test usingvector-tile/test/fixtures/*.vector.pbfdata files.NotesThis library has only been tested againstPython 3.6.Feel free tosubmit your issues.
Package: vt2pbf
vt2pbfPython port ofJS vt-pbfto EncodeMapbox vector tilesto binary protobufs in python.
Right now available only version 2 of mapbox vector tiles specInstallvt2pbfis available onPyPi.Install using pip.pipinstallvt2pbfImportgeojson2vtfromvt2pbfimportvt2pbfUsageFirstly you need to make a vector tile. You can do it by your own or use some libraries to convert,
for example geojson into vector tiles using python port ofgeojson-vtlibrary -geojson2vtAfter you can easily encode your vector tile into pbf:# build an initial index of tilestile_index=geojson2vt(geojson,{})# request a particular tilevector_tile=tile_index.get_tile(z,x,y)# encode vector tile into pbfpbf=vt2pbf(vector_tile)print(pbf)# b'\x1a\xfb\x01\n\x0cgeojsonLayer\...'vt2pbftakes two additional arguments:layer_nameis a name of encoded layer,default='geojsonLayer',extendis definition of the extent of the tile,default=4096Additional usageYou also can encode  any custom information in pbf byMapbox vector tiles specfromvt2pbfimportTiletile=Tile(extend=extend)tile.add_layer(layer_name,features=features)# features in vector_tile format (close to vector_tile['features'])tile.add_layer(other_layer_name,features=features)pbf_string=tile.serialize_to_bytestring()print(pbf_string)# b'\x1a\xfb\x01\n\x0cgeojsonLayer\...'In addition you can parse encoded data from bytestring using:fromvt2pbfimportparse_from_stringpbf_string=b'\x1a\xfb\x01\n\x0cgeojsonLayer\...'tile=parse_from_string(pbf_string)print(tile.tile_pbf)# layers {#   name: "geojsonLayer"#   features {#     tags: 0#     ...Right now you cannot add some additional layers or info to parsed tile, but it will be available in futureAcknowledgementsAll the credit of tile encoding belongs to the collaborators ofJS vt-pbf.
Package: vtam
VTAM is a metabarcoding package with various commands to process high throughput sequencing (HTS) data of amplicons of one or several metabarcoding markers in FASTQ format and produce a table of amplicon sequence variants (ASVs) assigned to taxonomic groups.
If you use VTAM in scientific works,please cite the following article:González, A., Dubut, V., Corse, E., Mekdad, R., Dechatre, T. and  Meglécz, E..VTAM: A robust pipeline for processing metabarcoding data using internal controls.
bioRxiv:10.1101/2020.11.06.371187v1.Commands for a quick installation:condacreate--namevtampython=3.9-ycondaactivatevtamThen install dependenciespython3-mpipinstallcutadaptcondainstall-cbiocondablast-ycondainstall-cbiocondavsearch-ypython3-mpipinstallvtamCommands for a quick working example:vtamexamplecdexamplesnakemake--printshellcmds--resourcesdb=1--snakefilesnakefile.yml--cores4--configfileasper1/user_input/snakeconfig_mfzr.yml--untilasvtable_taxaThe table of amplicon sequence variants (ASV) is here:(vtam)user@host:~/vtam/example$head-n4asper1/run1_mfzr/asvtable_default_taxa.tsvrunmarkervariantsequence_lengthread_counttpos1_run1tnegtag_run114ben0114ben02clusteridclustersizechimera_borderlineltg_tax_idltg_tax_nameltg_rankidentityblast_dbphylumclassorderfamilygenusspeciessequencerun1MFZR25181478478000251False131567cellularorganismsnorank80coi_blast_db_20200420ACTATACCTTATCTTCGCAGTATTCTCAGGAATGCTAGGAACTGCTTTTAGTGTTCTTATTCGAATGGAACTAACATCTCCAGGTGTACAATACCTACAGGGAAACCACCAACTTTACAATGTAATCATTACAGCTCACGCATTCCTAATGATCTTTTTCATGGTTATGCCAGGACTTGTTrun1MFZR51181165000165511Falsecoi_blast_db_20200420ACTATATTTAATTTTTGCTGCAATTTCTGGTGTAGCAGGAACTACGCTTTCATTGTTTATTAGAGCTACATTAGCGACACCAAATTCTGGTGTTTTAGATTATAATTACCATTTGTATAATGTTATAGTTACGGGTCATGCTTTTTTGATGATCTTTTTTTTAGTAATGCCTGCTTTATTGrun1MFZR88175640640000881False1592914Caenispusillaspecies100coi_blast_db_20200420ArthropodaInsectaEphemeropteraCaenidaeCaenisCaenispusillaACTATATTTTATTTTTGGGGCTTGATCCGGAATGCTGGGCACCTCTCTAAGCCTTCTAATTCGTGCCGAGCTGGGGCACCCGGGTTCTTTAATTGGCGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTTATTATGATTTTTTTCATGGTTATGCCTATTATAATCThe database of intermediate data is here:(vtam)user@host:~/vtam/example$sqlite3asper1/db.sqlite'.tables'FilterChimeraSampleFilterChimeraBorderlineSampleInformationFilterCodonStopSortedReadFileFilterIndelTaxAssignFilterLFNVariantFilterLFNreferenceVariantReadCountFilterMinReplicateNumberwom_ExecutionFilterMinReplicateNumber2wom_FileInputOutputInformationFilterMinReplicateNumber3wom_OptionFilterPCRerrorwom_TableInputOutputInformationFilterRenkonenwom_TableModificationTimeMarkerwom_ToolWrapperReadCountAverageOverReplicateswom_TypeInputOrOutputRunTheVTAM documentationis hosted at ReadTheDocs.VTAM is maintained by Aitor González (aitor dot gonzalez at univ-amu dot fr) and Emese Meglécz (emese dot meglecz at univ-amu dot fr).
Package: vtarget
vTarget packageDescripciÃ³nEste es un paquete de Python correr los flujos generados con el mÃ³dulo de Dataprep de vTarget.InstalaciÃ³nPara instalar este paquete, puedes usarpip:pip install vtargetUsoPara usar este paquete, primero debes importarlo en tu script de Python:importvtargetLuego, puedes usar la funciÃ³nrun_flowpara correr un flujo generado por vTarget. Por ejemplo:nodos=vtarget.run_flow("Flow.json")print(nodos["v_output"]["Out"])ContribuirPuedes informar errores o sugerir mejoras a travÃ©s del siguienteformulario.LicenciaEste proyecto estÃ¡ licenciado bajo la licencia BSD. Consulta el archivoLICENSEpara obtener mÃ¡s informaciÃ³n.
Package: vtece4564-gamelib
gamelibThis project provides a Python library teams may use for
satisfying various aspects of the final project for ECE 4564.
It contains the following packages:gameauth-- authentication and authorization supportgamecomm-- client and server communication supportgamedb-- user and game database supportInstallationTo install this library, update your project'srequirements.txtto include
the name of the library.vtece4564-gamelibThen install the dependency either using your IDE orpipIn PyCharm, simply opening therequirements.txtwill notify you of anymissing dependencies and will offer you an opportunity to install, ORUsepip install -r requirements.txtwhile your project's virtual
environment is active in your shell.