Saravanan666/pypi-org huggingface dataset:
Package: vsbio
sbioCollection of simple Bioinformatic tools.fastq_qualityScript usage:fastq_quality.py -r1 *R1*.fastq.gz -r2 *R2*.fastq.gzfastq_quality.py -hModule usage:from sbio.fastq_quality import FASTQ_Qualityfq = FASTQ_Quality(read1, read2, sampling_number)fq.run()Files must be .gz zippedPaired reads must contain _R1 or _R2 in file nameAlong with the FASTQ file and sample name 5 FASTQ attributes are obtained:file_size --> FASTQ file size (human readable)
total_read_count --> Total read count within each FASTQ filesampling_size  --> Random analyzed read countlength_mean --> Average read lengthread_average --> Average read qualityreads_gt_q30 --> Read counts with an average quality greater than 30Note: when calculating percent of reads above Q30 use reads_gt_q30/sampling_sizeAfter ran object will contain nested dot notation for each read, fq.read1.fastq --> 'sample_S25_L001_R1.fastq.gz'
Package: vs.bootstrap.plonetheme
ContentsIntroductionInstallationUsing BuildoutUsing zipCustomizationBug trackerAuthorCopyrights and licensesContributorsChangelog1.0.6 (2013-05-11)1.0.5 (2013-03-11)1.0.4 (2013-03-03)1.0.3 (2013-02-27)1.0.2 (2013-02-25)1.0.1 (2013-02-21)1.0 (2013-01-15)IntroductionBootstrap theme for PloneInstallationUsing BuildoutAddvs.bootstrap.plonethemeto eggs section of your instance:[instance]
…
eggs =
    …
    vs.bootstrap.plonethemeUsing zipCreate a zip file:$ git clone git://github.com/veit/vs.bootstrap.plonetheme.git
$ cd vs.bootstrap.plonetheme
$ git archive --format=zip --prefix=bootstrap/ HEAD:src/vs/bootstrap/plonetheme/static/ > bootstrap.zipActivateDiazo theme supportin the Plone control panelAdd-ons.Import this zip file in theImport themetab of theTheme Settingsview:@@theming-controlpanel.Activate theme in theBasic settingstab:Select the themevs.bootstrap.plonethemeEnable themeSaveCustomizationYou can customize the generated bootstrap files using the Diazo Bootstrap
Framework.Bug trackerHave a bug? Please create an issue here on GitHub that conforms withnecolass guidelines:IssuesAuthorVeit SchielegithubTwitterCopyrights and licensesvs.bootstrap.plonethemeCopyright 2012 Veit SchieleLicensed under GPL version 2.DiazoCopyright Plone FoundationLicensed under a BSD-like License.BootstrapCopyright 2012 Twitter, Inc.Licensed under theApache License v2.0.Font AwesomeFont licensed under theSIL Open Font License.CSS, LESS, and SASS files licensed under theMIT License.Pictograms licensed under theCC BY 3.0 License.ContributorsVeit Schiele, AuthorChangelog1.0.6 (2013-05-11)Updated to zc.buildout 2
[Veit Schiele]1.0.5 (2013-03-11)More restrictive rule for contact form
[Veit Schiele]1.0.4 (2013-03-03)Added rules for analytics
[Veit Schiele]1.0.3 (2013-02-27)Fixed search field in navbar
[Veit Schiele]1.0.2 (2013-02-25)Added rules for plone glossary
[Veit Schiele]Added document actions
[Veit Schiele]Updated to bootstrap 2.3
[Veit Schiele]1.0.1 (2013-02-21)Added hero unit
[Veit Schiele]Switched to 9 span main column
[Veit Schiele]1.0 (2013-01-15)Initial implementation with theDiazorules andLESSof theDiazo Bootstrap Framework.
[Veit Schiele]
Package: vs.bootstrap.tinymce
ContentsIntroductionContributorsChangelog1.0.3 (2013-05-11)1.0.2 (2013-02-13)1.0.1 (2013-02-12)1.0 (2013-02-12)Introductionvs.bootstrap.tinymce is part of theDiazo Bootstrap frameworkto add the Bootstrap css classes
for TinyMCE in Plone.ContributorsVeit Schiele, AuthorChangelog1.0.3 (2013-05-11)Updated description
[Veit Schiele]Updated to zc.buildout 2
[Veit Schiele]1.0.2 (2013-02-13)Purged styles in tinymce
[Veit Schiele]1.0.1 (2013-02-12)Added files for distribution
[Veit Schiele]1.0 (2013-02-12)Added bootstrap styles
[Veit Schiele]
Package: vsbutton
The VSButton module is designed to create modern and stylish buttons that resemble those used in the Visual Studio main page. These buttons are not only visually appealing but also highly customizable. With this module, you can effortlessly integrate these buttons into your Tkinter-based graphical user interfaces (GUIs).Key Features:Customizable Appearance: You can create buttons with unique headings, descriptions, secondary descriptions, and icons. The module allows you to define the appearance of your buttons, including their color themes (light or dark), making them suitable for various styles and designs.Hover Effects: The buttons come with built-in hover effects. When the mouse cursor hovers over a button, you can specify custom actions, such as changing the button’s appearance or displaying additional information.Clickable Actions: These buttons support click events. You can define actions or functions to execute when the buttons are clicked, enabling seamless integration with your application’s functionality.
Package: vscan
Virus-Scanner 1.0Open source virus scanner built using python and various APIsInstall requirementspip install -r requirements.txt
//Or 
pip3 install -r requirements.txtInstalling PIP projectpip3 install vscanRun withvscanCreate config fileCreate a file called config.yaml and add the following informationMeta_Defender_API_key: <api_key>
Virus_Total_API_key: <api_key>Running the programpython3 vscanOR./vscanThis is the main program, main.py is not to be used directly by the user.TODOCheck if website exists when scanning URLsLook to make program pip installable
Package: vscapi
vapoursynth-capiVapourSynth C Api bindings in PythonYou can find support in theIEW Discord server.How to installInstallvscapiwith the following command:$pipinstallvscapiOr if you want the latest git version, install it with this command:$pipinstallgit+https://github.com/Setsugennoao/vapoursynth-capi.git
Package: vsc-base
vsc-baseDescriptionCommon tools used within our organization.
Originally created by the HPC team of Ghent University (https://ugent.be/hpc).Namespaces and toolslib/utilspython utilities to be used as librariesfancylogger: an extention of the default python logger designed to be easy to use and have a couple offancyfeatures.custom specifiers for mpi loggin (the mpirank) with autodetection of mpicustom specifier for always showing the calling function's namerotating file handlera default formatter.logging to an UDP server (logdaemon.py f.ex.)easily setting logleveldaemon.py: Daemon class written by Sander Marechal (http://www.jejik.com) to start a python script as a daemon.missing.py: Small functions and tools that are commonly used but not available in the Python (2.x) API.cache.py: File cache to store pickled data identified by a key accompanied by a timestamp.(moved tovsc-utils)generaloption.py: A general option parser for python. It will fetch options (in this order) from config files, from environment variables and from the command line and parse them in a way compatible with the default python optionparser. Thus allowing a very flexible way to configure your scripts. It also adds a few other useful extras.affinity.py: Linux cpu affinity.Based onsched.handbits/sched.h,see man pages forsched_getaffinityandsched_setaffinityalso provides acpusetclass to convert between human readable cpusets and the bit version Linux priorityBased on sys/resources.h and bits/resources.h see man pages forgetpriorityandsetpriorityasyncprocess.py: Module to allow Asynchronous subprocess use on Windows and Posix platformsBased on apython recipeby Josiah Carlsonadded STDOUT handle and recv_somedaemon.py:A generic daemon class by Sander Marechaldateandtime.py: A module with various convenience functions and classes to deal with date, time and timezone.nagios.py: This module provides functionality to cache and report results of script executions that can readily be interpreted by nagios/icinga.run.py: Python module to execute a command, can make use of asyncprocess, answer questions based on a dictionarysupports a whole lot of ways to input, process and output the command. (filehandles, PIPE, pty, stdout, logging...)mail.py: Wrapper around the standard Python mail library.Send a plain text messageSend an HTML message, with a plain text alternativebinA collection of python scripts, these are examples of how you could use fancylogger to log to a daemon, but should not be used directly.logdaemon.py: A daemon that listens on a port for udp packets and logs them to file, works toghether with fancylogger.startlogdaemon.py: Script that will start the logdaemon for  you and set environment variables for fancylogger.Acknowledgementsvsc-base was created with support ofGhent University,
theFlemish Supercomputer Centre (VSC),
theFlemish Research Foundation (FWO),
andthe Department of Economy, Science and Innovation (EWI).
Package: vscode-debugger-magic
Vscode-Debugger-MagicAttach a debugging session of visual studio code to the jupyter notebookInstallpip install vscode-debugger-magicUsageLoad the magic extension:%load_ext vscode_debugger_magicRun the magic in jupyter notebook%vscodedebuggerActivate the debugging session in Visual studio code in the Python attached mode:{"name":"Python: Attach","type":"python","request":"attach","port":5678,"host":"localhost"},Set breakpoints in vscodeInvoke functions to be debuggedOption:--timeoutor-tseconds: timeout to attach debugger%vscodedebugger -t 10
Package: vscodedebugvisualizer
This package adds python support to theDebug Visualizer.Installation InstructionsTheDebug Visualizeris required. To install the extension for python, your're required to install the package within your debug enviroment:pip install vscodedebugvisualizerpysupported TypesNumpy Array / PyTorch Tensors / Tensorflow TensorsAll Tensors are converted to numpy arrays and treated alike.If there multiple dimensions only the last 2 dimensons are visualized, the longer dimension ist treated as x axis. The X axe is downsampled to 1000 points and the y axe only shows the first 10 rows.DataframesDataframes are transformed to data tables.Add your own representation/data extractorAsuming you have a specific Type in your project you want to visualize. You can create a filedebugvisualizer.pyin your project root directory, that will be injected into the debug process.Asuming we want to visualize the classPerson:classPerson:def__init__(self,name,parents=None)->None:self.name=nameself.parents=[]ifparentsisNoneelseparentsdefaddParent(self,parent:"Person"):self.parents.append(parent)Indebugvisualizer.pyyou can access all available visualizer with thefrom vscodedebugvisualizer import globalVisualizationFactory. To support your Type you need to create an class that hascheckType(anytype) -> Booleanandvisualize(self, data) -> Nonedefined.checkTypeshould returnTrueif the given object is supported by the Visualizer.visualizereturns a json string that is supported by the visualizer client (see playground).Finally you need to add the visualizer to theglobalVisualizationFactorywithglobalVisualizationFactory.addVisualizer(YourVisualizer()).For the Person-Example:fromPersonimportPersonfrompandas.ioimportjsonfromvscodedebugvisualizerimportglobalVisualizationFactoryclassPersonVisualizer:defcheckType(self,t):""" checks if the given object `t` is an instance of Person """returnisinstance(t,Person)defvisualizePerson(self,person:Person,nodes=[],edges=[]):ifperson.namein[n["id"]forninnodes]:returnnodes,edgesnodes.append({"id":person.name,"label":person.name,})forpinperson.parents:nodes,edges=self.visualizePerson(p,nodes,edges)edges.append({"from":p.name,"to":person.name,})returnnodes,edgesdefvisualize(self,person:Person):jsonDict={"kind":{"graph":True},"nodes":[],"edges":[],}self.visualizePerson(person,jsonDict["nodes"],jsonDict["edges"])returnjson.dumps(jsonDict)globalVisualizationFactory.addVisualizer(PersonVisualizer())For more visualization examples check out thevisualizer playground
Package: vs-code-downloader
VS Code 国内镜像下载器概述由于一些原因，国内下载 vs code 速度较慢，其实，微软在国内是提供了一个 CDN 地址可以快速的下载 vs code 的，但是不知为何在下载时并没有根据 IP 来源返回这个 CDN 的地址。该工程通过可以通过从 vs code 官网取得下载地址后，将地址替换成 CDN 地址然后进行下载。使用方法# 依据当前系统下载最新稳定版本，保存到当前目录python3-mvs-code-downloader# 下载 win64 的 insider 版本，下载到 /data 目录python3-mvs-code-downloader-owin32-x64-binsider-d/data# 更多内容请查看帮助信息python3-mvs-code-downloader-h
Package: vscode-ext
AboutCreate vscode extensions and color themes with python.InstallationStable version:pip install vscode-extWhy use this?Why should you use this for building VScode extensions when you can use typescript? Here are some reasons:vscode-ext builds the package.json for you! No need to switch between your extension.py and package.json in order to add commands. It also handles adding Activity Bars, Keybinds and Views.vscode-ext provides a more pythonic way of creating the extension. Python also has some powerful modules that Javascript doesn't and you can include these with vscode-extvscode-ext extensions work perfectly with vsce and you can publish your extensions just like you would publish any other extension.Example Extensionimportvscodeext=vscode.Extension(name="testpy",display_name="Test Py",version="0.0.1")@ext.eventdefon_activate():returnf"The Extension '{ext.name}' has started"@ext.command()defhello_world():vscode.window.show_info_message(f'Hello World from{ext.name}')@ext.command(keybind="ALT+5")defask_question():res=vscode.window.show_info_message('How are you?','Great','Meh')ifres=="Great":vscode.window.show_info_message('Woah nice!!')elifres=="Meh":vscode.window.show_info_message('Sorry to hear that :(')vscode.build(ext)TutorialStep 1Create a python file inside a folder.Step 2Write the code for your extension. For this tutorial we have used theExample ExtensionStep 3Run the python file. It will build the files.Step 4Press F5. This will run the extension and open a new vscode window in development mode.Step 5Finally, test your command.Open the command palette with Ctrl+P in the development window.Type>Hello WorldIt should show a popup like this in the bottom right cornerColor Theme Exampleimportvscodetheme=vscode.ColorTheme(name='my-theme',display_name='My Theme',version='0.0.1')theme.set_colors(background='#12171F',foreground='#EFEFEF',accent_colors=['#399EF4','#DA6771','#4EB071','#FFF099'])vscode.build_theme(theme)Extensions built using vscode-extHere's a list of some extensions built using vscode-ext. If you'd like to include your extension here feel free to create a PR.YoutubeWikipediaInternet SearchVirtual AssistantDocumentationThe docs are coming soon! In the meantime you can look at theexamplesin order to learn how vscode-ext works and what it offers!
Package: vscodeformer
CodeFormerTowards Robust Blind Face Restoration with Codebook Lookup TransFormer, based onhttps://github.com/sczhou/CodeFormer.DependenciesNumPyOpenCV-PythonPyTorch1.13.1VapourSynthR55+Installationpip install -U vscodeformer
python -m vscodeformerUsagefromvscodeformerimportcodeformerret=codeformer(clip)See__init__.pyfor the description of the parameters.
Package: vscode-icons
vscode-iconsDjango app to provide vscode icons for web application.Please refer tooriginal authorfor more detail.InstallationFollowing command will help to install the package.pipinstallvscode-iconsSetupAdd the app tosetting.pyfile inINSTALLED_APPSsection.INSTALLED_APPS=[...'vscode_icons',]Usagefromvscode_icons.vscodeimportVSCodeIconsvsi=VSCodeIcons()# Getting file pathfile_name='image.png'file_icon_path=vsi.findFileIcon(file_name)print(f'File Icon:\t{file_icon_path}')# Getting directory pathdir_name='Documents'dir_icon_path=vsi.findDirectoryIcon(dir_name)print(f'Directory Icon:\t{dir_icon_path}')OutputFileIcon:vscode_icons/icons/file_type_image.svg
DirectoryIcon:vscode_icons/icons/default_folder.svgAuthorTahir RafiqueReleasesDateVersionSummary15-Jun-23v1.0.0Initial build
Package: vscode.py
AboutCreate vscode extensions with python.InstallationStable version:pip install vscode.pyWhy use vscode.py?Why should you use this for building VScode extensions when you can use typescript? Here are some reasons:vscode.py builds the package.json for you! No need to switch between your extension.py and package.json in order to add commands. It also handles adding Activity Bars, Keybinds and Views.vscode.py provides a pythonic way of creating the extension. Python has some powerful modules that Javascript doesn't and you can include these with vscode.pyvscode.py extensions work perfectly with vsce and you can publish your extensions just like you would publish any other extension.Example ExtensionimportvscodefromvscodeimportInfoMessageext=vscode.Extension(name="Test Extension")@ext.eventasyncdefon_activate():vscode.log(f"The Extension '{ext.name}' has started")@ext.command()asyncdefhello_world(ctx):returnawaitctx.show(InfoMessage(f"Hello World from{ext.name}"))ext.run()TutorialStep 1Create a python file inside a folder.Step 2Write the code for your extension. For this tutorial we have used theExample ExtensionStep 3Run the python file. It will build the required extension files.Step 4Press F5. This will run the extension and open a new vscode window in development mode.Step 5Finally, test your command.Open the command palette with Ctrl+P in the development window.Type>Hello WorldIt should show a popup like this in the bottom right cornerExtensions built using vscode.pyHere's a list of some extensions built using vscode.py. If you'd like to include your extension here feel free to create a PR.YoutubeWikipediaInternet SearchVirtual AssistantYoExtensionDocumentationThe docs are coming soon! In the meantime you can look at theexamplesin order to learn how vscode.py works and what it offers!
Package: vscode-pylettes
vscode-pylettesColor Palettes from VSCode most famous themes made available in RGB and HEX.UsageKnow available palettes>>>importpylettes>>>pylettes.palettes_list['CatpuccinoFrappe','CatpuccinoLatte','CatpuccinoMacchiato','CatpuccinoMocha','Dracula','Hypersubatomic','MonokaiClassic','MonokaiMachine','MonokaiOctagon','MonokaiPro','MonokaiRistretto','MonokaiSpectrum','OneDark','TokyoNight','TokyoNightLight','TokyoNightStorm']Select a Palette>>>importpylettes>>>pylettes.CatpuccinoFrappePaletteCatpuccinoFrappewithcolors['rosewater','flamingo','pink','mauve','red','maroon','peach','yellow','green','teal','sky','sapphire','blue','lavender','text','subtext1','subtext0','overlay2','overlay1','overlay0','surface2','surface1','surface0','base','mantle','crust']Select a Color from a Palette>>>importpylettes>>>frappe=pylettes.CatpuccinoFrappe>>>frappe.greenColorwithrgb(166,209,137),hex#A6D189 and hsl (95, 43, 67)>>>frappe.green.rgb(166,209,137)>>>frappe.green.hex'#A6D189'>>>frappe.green.hsl(95,43,67)Example of useBelow you can see all the supported themes. The images were created automatically usingManimCEwith the code inside palettes_examples/make_palettes_examples.pySupported ThemesCatpuccino ThemesDracula themesHypersubatomic themesLotus ThemesMonkai ThemesOne Dark ThemesTokyo Night Themes
Package: vsco-dl
vsco-dlvsco-dl allows you to scrape and download a VSCO user's images/videos and journals.InstallationTo install vsco-dl:$pipinstallvsco-dlTo update vsco-dl:$pipinstallvsco-dl--upgradeUsage# Download a user's images/videos$vsco-dl-i<username># Download a user's journals$vsco-dl-j<username># Using both at once is fine$vsco-dl-ij<username>Images are by default downloaded into./<username>. You can change this with the-ooption.
This option also affects journal downloads, which by default downloads into./<username>/journal/.You may specify a file as input. This file must contain one username per line. Blank lines are skipped.$ vsco-dl -i -f <filename>OptionsOptionDescription-i, --imagesScrape and download user's images/videos-j, --journalsScrape and download user's journals-f, --filenameSpecify filename containing multiple usernames to download-o, --outputSet output directory for user.%uwill be replaced by the username-w, --workersSet max download workers (default is 5)-h, --helpPrint helpLicenseThis project is licensed under the GNU GPLv3 License - seeLICENSEfor details
Package: vs-colabi
vs-colabiGetting starteda library allow to use vs code tunnel in google colabInstallationpipinstallvs-colabiExamplefromvscolabiimportconfigureconfigure()# configure(clear = True, mount = False  , tab = False ) :#   clear : True to clear the colab output#   mount : True to mount google drive#   tab   : True to open vscode in new tabSteps  :a button will be display it --> click .this button once is clicked will show pop frame , paste the code inside input , (code is copy the code to clipboard automaitcly ).after contunue the steps in the pop up , it will display a buttons with text open vscode
Package: vs.contentnavigation
vs.contentnavigationvs.contentnavigation adds a collapsable folder navigation
viewlet to arbitrary folderish objects.Installationaddvs.contentnavigationto theeggssection of your
buildout or as dependency to your own Plone policy packagere-run buildoutaddvs.contentnavigationto Plone through site setupUsageFolderish objects (providing IATFolder) will have a new metadataContent navigationcheckbox.Requirementstested with Plone 4.0 - 4.3Licencevs.contentnavigationis published under the GNU Public Licence V 2 (GPL 2)Repositoryhttps://github.com/veit/vs.contentnavigationAuthorsAndreas JungZOPYX Limitedinfo@zopyx.comwww.zopyx.comVeit SchieleVeit Schiele Communications GmbHkontakt@veit-schiele.dewww.veit-schiele.deContributorsThomas GrafChangelog0.2.3 (2014-01-12)added Plone 4.0 support0.2.0 (2014-01-08)requires Plone 4.1 or highermergedhttps://github.com/veit/vs.contentnavigation/pull/1[ajung]speedup navtree  generationcheck if product installed done by browserlayerroot node can be displayed (configuration done by registry entry)0.1.0 (2012-08-08)first public release
Package: vs.contentpopup
vs.contentpopupvs.contentpopupprovides the following functionality to Plone 4.X:simple popup/overlay support for content imagestables with class “Table as popup/overlay” are hidden by default and replaced
with the table caption. Clicking on the table caption will render table
contents inside a standard Plone overlay.RequirementsPlone 4.XInstallationThe standard Plone installation procedure applies (addvs.contentpupto your
buildout configuration, re-run buildout and add install it within your Plone site).Licencevs.contentpopup published under the GNU Public Licence V2 (GPL 2)AuthorsAndreas JungZOPYX Ltd.info@zopyx.comwww.zopyx.comVeit SchieleVeit Schiele communications GmbHkontakt@veit-schiele.dewww.veit-schiele.deChange historyChangelog0.2.4 (17/04/2012)image popup did only work for the first imagecompatibility fix for Plone 4.0 and 4.20.2.3 (04/04/2012)TinyMCE i18n adjusted0.2.0 (03/04/2012)unicode encoding fixes in table popup code0.1.0 (02/04/2012)Initial release
Package: vsc-tools-lib-gjbex
vsc-tools-libLibrary of tools to parse output of PBS torque and Adaptive Moab tools,
and represent the relevant data.Functionality for PBS torquevsc.pbs.job: representation of a PBS jobvsc.pbs.qstat: parser for output of theqstat -fcommandvsc.pbs.node: representation of a PBS nodevsc.pbs.job_analysis: convenience class for PBS log analysisvsc.pbs.job_event: representation of job events in PBS log filesvsc.pbs.log: PBS torque log file parservsc.pbs.pbsnodes: parser for the output of thepbsnodescommandvsc.pbs.script_parser: parser for PBS script filesvsc.pbs.option_parser: parser for PBS options, used byvsc.pbs.script_parservsc.pbs.utils: auxiliary functions (site specific)vsc.pbs.check: semantic checks of a PBS job specificationFunctionality for Adaptive Moabvsc.moab.job: representation of a PBS job's statusvsc.moab.showq: parser for the output of theshowqcommandvsc.moab.checkjob: parser for a small part of the output of thecheckjobcommandFunctionality for Adaptive MAMvsc.mam.account: representation of a MAM accountvsc.mam.gbalance: parser for the output of thegbalancecommandUtilitiesvsc.eventlogger: base class that acts as a logger for errors and
warnings,vsc.pbs.script_parserandvsc.pbs.option_parserextend
itvsc.utils: functions for time and size conversionvsc.plotly: functions to annotate plotly graphsDependenciesPython 3.5+validate_emailfuzzywuzzyReverse dependencieshttps://github.com/gjbex/qlinthttps://github.com/gjbex/vsc-cluster-dbhttps://github.com/gjbex/vsc-monitoring
Package: vsc-utils
vsc-utilsDescriptionCommon tools used within our organization.
These tools live in the vsc.utils namespace, toghether with the tools from
vsc-base.They have been split of from vsc-base because the tools here need aditional dependencies
to work correctly whereas the tools in vsc-base do not.Originally created by the HPC team of Ghent University (https://ugent.be/hpc).