Package: vaquero
What is Vaquero?TL;DRIt’s a library for iterative and interactive data wrangling at
laptop-scale. If you spend a lot of time in aJupyter
notebook, trying to clean dirty, raw data, it’s
probably useful.It would be nice if it were possible to write data cleaning code
correctly. But, the people who pay you to do data analysis don’t do data
analysis and don’t understand how dangerous dirty data are, so you
rarely get the luxury of feeling secure with what you extract. Vaquero
tries to find a balance between “business” demands and good hygiene.
Borrowing from Larry Wall, it tries “to make the easy things easy, and
the hard things possible.” In this context, “hard things” refers to
those wonderfully fun situations where, you write some code that you
know will break in the future but you have no time to fix it; then,
three months later, it breaks and you have no idea what your code does.See also:On Disappearing
CodeAn ExampleIt’s easier to get a sense of “why” by looking at a notebook.Notebook for the common usage
patternNotebook for inline
pipelinesExpecting ExceptionsVaqueroexpectsexceptions, making them pretty unexceptional. But,
Python’s exception handling is cheap, so that’s fine (i.e. EAFP –
Easier to ask for forgiveness than permission). Plus, with dirty data,
you know it will probably fail for some records. During development,
rather than halting each time, vaquero continues on its merry way, up to
some failure limit. For each failure, the library logs the exception,
including the name of the fileandthe arguments which resulted in a
failure.After you have processed all the documents, you can then inspect the
errors. This helps you scan for error patterns, rather than programming
by the coincidence of the first error raised. Moreover, since you the
offending function and its arguments, it is easy to update the new
function, ensuring it passes with the prior bad example. Vaquero reloads
the pipeline for you. (Or, at least tries to, because reloading is
tricky.)Modules as PipelinesNamespaces are one honking great idea – let’s do more of those!Programmers use namespaces everywhere to organize their code. Yet, when
writing data cleaning code, everything ends up in a big file with lots
of poorly-named functions. Think:from hellishlib import *. The
perfectionist in me says, “this is awful, and I should write it
properly, as a full library with lots of unit tests!” But, for
“perfectionists with deadlines,” that’s not possible.Furthermore, the single-file-of-functions pattern emerges not only
because of time constraints; it’s a reflection of the problem! ELT code
isinherentlytightly-coupled. Code that extracts this variable
probably depends on that one which in turn also depends on some other
one. This leads to a tree of transformations, encapsulated by function
calls.Recognizing this,vaquerodoesn’t try to move you away from
collecting all your ELT code in a single file. It’s going to happen
anyway. Instead, it makes it safer with some conventions.A module represents a single encapsulated pipeline. It should process
a well-defined document.The function definition order is meaningful. Functions at the top of
the file execute before those above them. Again, it’s a pipeline.As per pythonic convention, functions prefixed with_are
private. Here, that means, the pipeline constructor ignores it when
compiling the pipeline. This gives you nice helper functions.You’re probably not going to use unit tests – you don’t have time.
But, since it’s a module, pepper it with assertions. And, using the_-prefix, you can actually write namespaced tests (e.g._my_test()), and immediately call them in the module. (I actually
write a lot of my code withunittestin the pipeline module and
it gets called right before the module fully imports.) Then, when you
break something, you can’t even start pipeline processing. It fails
fast. (You can deviate from this pattern – but, in general, don’t.)InstallationpipinstallvaqueroTipsThef(src, dst)PatternFor most of my pipelines, I tend to write functions that look like,deff(src_d,dst_d):dst_d['age']=int(src_d['AGE1'])Coming from functional languages, I’d prefer immutable objects. But, in
Python, that tends to be painfully slow. This pattern represents a
compromise that usually works well. On the one side (dst_d) you have
already processed elements; on the other, the raw data.Hidden field patternAssume you are processing a pipeline with a dict destination
document. Use ‘_key_name’ fields for intermediary results in a
document. You can delete them at the end of the pipeline (easily, viavaquero.transformations.remove_private_keys), but in the interim,
you’ll see these fields on failure.DisclaimerI have this big monstrous library called vaquero on my computer. It’s a
collection of lots of functions I’ve written over (entirely too) many
data munging projects. I use it often, and keep telling myself “once I
find the time, I’ll release it!” And, that never happens. It’s too big
to clean up in a way that makes me comfortable. Instead, I’ll be
releasing little bits of code in a ad-hoc, just-in-time fashion. When I
absolutely need some feature of the big library going forward, I’ll
extract it and put it here.That makes me wildly uncomfortable, but…I’m starving for time.In any case, library-user beware. Things will break.