Package: reportsrender
Generate reproducible reports from Rmarkdown or jupyter notebooksReportsrender allows to create reproducible, consistently looking HTML reports from
both jupyter notebooks and Rmarkdown files. It makes use ofpapermillandRmarkdownto execute notebooks and usesPandocto convert them to HTML.Features:two execution engines: papermill and Rmarkdown.support any format supported byjupytext.create self-contained HTML that can be shared easily.hide inputs and/or outputs of cells.parametrized reportsSee thedocumentationfor more details!Getting startedExecute an rmarkdown document to HTML using the Rmarkdown enginereportsrender --engine=rmd my_notebook.Rmd report.htmlExecute a parametrized jupyter notebook with papermillreportsrender --engine=papermill jupyter_notebook.ipynb report.html --params="data_file=table.tsv"Usage from command linereportsrender

Execute and render a jupyter/Rmarkdown notebook.
The `index` subcommand generates an index html
or markdown file that links to html documents.

Usage:
  reportsrender <notebook> <out_file> [--cpus=<cpus>] [--params=<params>] [--engine=<engine>]
  reportsrender index [--index=<index_file>] [--title=<title>] [--] <html_files>...
  reportsrender --help

Arguments and options:
  <notebook>            Input notebook to be executed. Can be any format supported by jupytext.
  <out_file>            Output HTML file.
  -h --help             Show this screen.
  --cpus=<cpus>         Number of CPUs to use for Numba/Numpy/OpenBLAS/MKL [default: 1]
  --params=<params>     space-separated list of key-value pairs that will be passed
                        to papermill/Rmarkdown.
                        E.g. "input_file=dir/foo.txt output_file=dir2/bar.html"
  --engine=<engine>     Engine to execute the notebook. [default: auto]

Arguments and options of the `index` subcommand:
  <html_files>          List of HTML files that will be included in the index. The tool
                        will generate relative links from the index file to these files.
  --index=<index_file>  Path to the index file that will be generated. Will be
                        overwritten if exists. Will auto-detect markdown (.md) and
                        HTML (.html) format based on the extension. [default: index.html]
  --title=<title>       Headline of the index. [default: Index]

Possible engines are:
  auto                  Use `rmd` engine for `*.Rmd` files, papermill otherwise.
  rmd                   Use `rmarkdown` to execute the notebook. Supports R and
                        python (through reticulate)
  papermill             Use `papermill` to execute the notebook. Works for every
                        kernel available in the jupyter installation.InstallationConda (recommended):As this reportsrender dependes on both R and Python packages, I recommend
to install it throughconda.
The following command will install reportsrender and all its dependencies in the
current conda environment:conda install -c conda-forge grst::reportsrenderIf you prefer not to use conda, you can follow the approach below:Manual installation:Get dependencies:PythonpandocFor the Rmarkdown render engine additionally
(there is no need to install them if you are not going
to use the Rmarkdown rendeirng engine):R and the following packages:rmarkdown
reticulatethen,Install from  pip:pip install reportsrenderor,Install from github:pip install flit
flit installfrom github:grst/reportsrender