Package: python-kmos
a vigorous attempt to make lattice kinetic Monte Carlo modelling more accessible.Copyright (C) 2009-13 Max J. Hoffmann <mjhoffmann@gmail.com>This program is free software; you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free Software
Foundation; either version 3 of the License, or (at your option) any later
version.This program is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.You should have received a copy of the GNU General Public License along with
this program; if not, seehttp://www.gnu.org/licenses/.DOCUMENTATIONPlease refer tohttps://www.th4.ch.tum.de/index.php?id=1321http://mhoffman.github.io/kmos/http://kmos.readthedocs.org/or links therein for tutorials, user guide, reference, and troubleshooting hints.THANKSThis project draws on several other great Python modules, which are in turn
each free software and I would like to thank each of these projects for
making their code freely avalaible, namely:PythonASENumpyf2pykiwi, gazpacholxml and in particularElementTreeFILES├── COPYING                                      # Copy of GPLv3├── INSTALL.rst                                  # installation instructions├── README.rst                                   # This document├── TODO.rst                                     # Ideas for improvement and new features├── requirements.txt                             # Dependencies which can be installed via pip├── setup.py                                     # setuptools using setup script├── index.html                                   # landing website├── kmos/                                        # the core kmos python modules│   ├── cli.py                                   # the command line interface│   ├── config.py                                # configuration of some project wide paths│   ├── fortran_src/                             # static Fortran 90 source files│   │   ├── assert.ppc                           # assertion macro│   │   ├── base.f90                             # the default kMC solver│   │   ├── base_lat_int.f90                     # slightly modified kMC solver for lat_int backend│   │   ├── kind_values.f90                      # definition of project wide kind values│   │   └── main.f90                             # source template for standalone Fortran 90 clients│   ├── gui/                                     # kmos.gui module│   │   ├── forms.py                             # view definitions (MVC) of editor GUI│   │   └── __init__.py                          # controller definitions (MVC) of editor GUI│   ├── __init__.py                              # root import module│   ├── io.py                                    # conversion between format: contains main Code Generator│   ├── kmc_editor.glade                         # Glade XML definiton for form interfaces│   ├── kmc_project_v0.1.dtd                     # Document Type Definition file of kMC project v0.1│   ├── kmc_project_v0.2.dtd                     # Document Type Definition file of kMC project v0.2│   ├── run.py                                   # High-level API for compiled models│   ├── species.py                               # Convenient interface for some reaction intermediates│   ├── types.py                                 # The basic classes for building kMC models│   ├── units.py                                 # Definition of conversion factor (CODATA 2010)│   ├── utils/                                   # Utility function that didn’t fit elsewhere│   │   ├── __init__.py│   │   ├── ordered_dict.py│   │   ├── progressbar.py│   │   └── terminal.py│   └── view.py                                  # The runtime GUI for compiled models├── doc/                                         # user guide, documentation, and reference│   └── source/                                  # documentation source file for compilation with Sphinx├── examples/                                    # demoing non-standard features and useful idioms│   ├── AB_model.py                              # small demo file│   ├── benchmark_compilers_and_backends.sh      # demo file│   ├── crowded.xml                              # demo file│   ├── dreiD.xml                                # demo file for 3d model│   ├── dummy.xml                                # mininal model│   ├── model_Pt111_surface.py                   # demo file for non-rectangular lattice│   ├── multidentate.py                          # basic example for multidentate adsorption│   ├── render_bigcell.py                        # demo containing many sites│   ├── render_co_oxidation_ruo2.py              # demoing th CO Oxidation at RuO2(110) model│   ├── render_diffusion_model.py                # idioms for describing lateral interaction│   ├── render_einsD.py                          # simple 1-dimensional model│   ├── render_multispecies.py                   # render many species│   ├── render_pairwise_interaction.py           # idioms for describing lateral interaction│   ├── render_Pt_111.py                         # another non-rectangular lattice│   ├── render_sand_model.py                     # a neat diffusion model for non-trivial boundary conditions│   ├── run_in_multi_process.py                  # an example for parallelization over processes│   ├── run.py                                   # a high-level run script using the ModelRunner metaclass│   ├── ruptured_Pd.xml                          # a fcc(100) like surface with some sites missing│   └── small.xml                                # demo file├── tests/                                       # Unit tests and test data└── tools                                        # Entry points for command line interface├── kmos├── kmos.bat├── kmos-build-standalone└── kmos-install-dependencies-ubuntu