Package: py-ecg-detectors
A collection of 8 ECG heartbeat detection algorithms implemented in Python.
In addition the modulehrvprovides tools to analyse heartrate variability.AuthorsLuis Howell,luisbhowell@gmail.comBernd Porr,bernd.porr@glasgow.ac.ukCitation / DOIDOI: 10.5281/zenodo.3353396https://doi.org/10.5281/zenodo.3353396Installationvia PIP:pip install py-ecg-detectors [--user]from source:python3 setup.py install [--user]Use the option–userif you don’t have system-wise write permission.ECG Detector Class UsageBefore the detectors can be used the class must first be initalised with the sampling rate of the ECG recording:fromecgdetectorsimportDetectorsdetectors=Detectors(fs)Seeusage_example.pyfor an example of how to use the detectors and
the documentation here:https://berndporr.github.io/py-ecg-detectors/HamiltonImplementation of P.S. Hamilton, “Open Source ECG Analysis Software Documentation”, E.P.Limited, 2002. Usage:r_peaks = detectors.hamilton_detector(unfiltered_ecg)ChristovImplementation of Ivaylo I. Christov, “Real time electrocardiogram QRS detection using combined adaptive threshold”, BioMedical Engineering OnLine 2004, vol. 3:28, 2004. Usage:r_peaks = detectors.christov_detector(unfiltered_ecg)Engelse and ZeelenbergImplementation of W. Engelse and C. Zeelenberg, “A single scan algorithm for QRS detection and feature extraction”, IEEE Comp. in Cardiology, vol. 6, pp. 37-42, 1979 with modifications A. Lourenco, H. Silva, P. Leite, R. Lourenco and A. Fred, “Real Time Electrocardiogram Segmentation for Finger Based ECG Biometrics”, BIOSIGNALS 2012, pp. 49-54, 2012. Usage:r_peaks = detectors.engzee_detector(unfiltered_ecg)Pan and TompkinsImplementation of Jiapu Pan and Willis J. Tompkins. “A Real-Time QRS Detection Algorithm”. In: IEEE Transactions on Biomedical Engineering BME-32.3 (1985), pp. 230–236. Usage:r_peaks = detectors.pan_tompkins_detector(unfiltered_ecg)Stationary Wavelet TransformImplementation based on Vignesh Kalidas and Lakshman Tamil. “Real-time QRS detector using Stationary Wavelet Transform for Automated ECG Analysis”. In: 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE). Uses the Pan and Tompkins thresolding method. Usage:r_peaks = detectors.swt_detector(unfiltered_ecg)Two Moving AverageImplementation of Elgendi, Mohamed & Jonkman, Mirjam & De Boer, Friso. (2010). “Frequency Bands Effects on QRS Detection” The 3rd International Conference on Bio-inspired Systems and Signal Processing (BIOSIGNALS2010). 428-431.
Usage:r_peaks = detectors.two_average_detector(unfiltered_ecg)Matched FilterFIR matched filter using template of QRS complex. Uses the Pan and Tompkins thresolding method.
The ECG template is a text file where the samples are in a single column. See
the templates folder on github for examples. Usage:r_peaks = detectors.matched_filter_detector(unfiltered_ecg,template_file)WQRSUses the wqrs detector by Zong, GB Moody, D Jiang. Usage:r_peaks = detectors.wqrs_detector(unfiltered_ecg)Heartrate variability analysisThe modulehrvprovides a large collection of heartrate
variability measures which are methods of the classHRV:HR(self, rr_samples)
   Calculate heart-rates from R peak samples.

NN20(self, rr_samples)
   Calculate NN20, the number of pairs of successive
   NNs that differ by more than 20 ms.

NN50(self, rr_samples)
   Calculate NN50, the number of pairs of successive
   NNs that differ by more than 50 ms.

RMSSD(self, rr_samples, normalise=False)
   Calculate RMSSD (root mean square of successive differences).

SDANN(self, rr_samples, average_period=5.0, normalise=False)
   Calculate SDANN, the standard deviation of the average
   RR intervals calculated over short periods.

SDNN(self, rr_samples, normalise=False)
   Calculate SDNN, the standard deviation of NN intervals.

SDSD(self, rr_samples)
   Calculate SDSD (standard deviation of successive differences),
   the standard deviation of the successive differences between adjacent NNs.

fAnalysis(self, rr_samples)
   Frequency analysis to calc self.lf, self.hf,
   returns the LF/HF-ratio.

pNN20(self, rr_samples)
   Calculate pNN20, the proportion of NN20 divided by total number of NNs.

pNN50(self, rr_samples)
   Calculate pNN50, the proportion of NN50 divided by total number of NNs.For parameters and additional info use the python help function:import hrv
help(hrv)The examplehrv_time_domain_analysis.pycalculates the heartrate
variability in the timedomain.Realtime / Causal processingMost ECG R-peak detectors won’t detect the actual R-peak so the name
“R-peak detector” is a misnomer. However in practise this won’t play
any role as only the temporal differences between R-peaks play a role.
Most detectors work with a threshold which moves the detection forward in time
and use causal filters which delay the detection. Only a
few detectors do actually a maximum detection but even they will be
most likely introducing delays as the ECG will be always filtered by causal
filters. In other words most
detectors cause a delay between the R peak and its detection. That delay
should of course be constant so that the resulting HR and HRV is correct.