Package: igel
A delightful machine learning tool that allows you to train/fit, test and use modelswithout writing codeNoteI’m also working on a GUI desktop app for igel based on people’s requests. You can find it underIgel-UI.Free software: MIT licenseDocumentation:https://igel.readthedocs.io.Table of ContentsIntroductionFeaturesInstallationModelsQuick StartUsageConfiguration StepTrainingEvaluationPredictionExperimentUse igel from python (instead of terminal)Serve the modelUse igel from python (instead of terminal)OverviewRead Data OptionsE2E ExampleAdvanced UsageExamplesAuto ML ExamplesImageClassificationTextClassificationGUIRunning with DockerLinksHelp/GetHelpContributionsLicenseIntroductionThe goal of the project is to provide machine learning foreveryone, both technical and non-technical
users.I needed a tool sometimes, which I can use to fast create a machine learning prototype. Whether to build
some proof of concept, create a fast draft model to prove a point or use auto ML. I find myself often stuck at writing
boilerplate code and thinking too much where to start. Therefore, I decided to create this tool.igel is built on top of other ML frameworks. It provides a simple way to use machine learning without writing
asingle line of code. Igel ishighly customizable, but only if you want to. Igel does not force you to
customize anything. Besides default values, igel can use auto-ml features to figure out a model that can work great with your data.All you need is ayaml(orjson) file, where you need to describe what you are trying to do. That’s it!Igel supports regression, classification and clustering.
Igel’s supports auto-ml features like ImageClassification and TextClassificationIgel supports most used dataset types in the data science field. For instance, your input dataset can be
a csv, txt, excel sheet, json or even html file that you want to fetch. If you are using auto-ml features, then you can even
feed raw data to igel and it will figure out how to deal with it. More on this later in the examples.FeaturesSupports most dataset types (csv, txt, excel, json, html) even just raw data stored in foldersSupports all state of the art machine learning models (even preview models)Supports different data preprocessing methodsProvides flexibility and data control while writing configurationsSupports cross validationSupports both hyperparameter search (version >= 0.2.8)Supports yaml and json formatUsage from GUISupports different sklearn metrics for regression, classification and clusteringSupports multi-output/multi-target regression and classificationSupports multi-processing for parallel model constructionSupport forauto machine learningInstallationThe easiest way is to install igel usingpip$pipinstall-UigelModelsIgel’s supported models:+--------------------+----------------------------+-------------------------+
|      regression    |        classification      |        clustering       |
+--------------------+----------------------------+-------------------------+
|   LinearRegression |         LogisticRegression |                  KMeans |
|              Lasso |                      Ridge |     AffinityPropagation |
|          LassoLars |               DecisionTree |                   Birch |
| BayesianRegression |                  ExtraTree | AgglomerativeClustering |
|    HuberRegression |               RandomForest |    FeatureAgglomeration |
|              Ridge |                 ExtraTrees |                  DBSCAN |
|  PoissonRegression |                        SVM |         MiniBatchKMeans |
|      ARDRegression |                  LinearSVM |    SpectralBiclustering |
|  TweedieRegression |                      NuSVM |    SpectralCoclustering |
| TheilSenRegression |            NearestNeighbor |      SpectralClustering |
|    GammaRegression |              NeuralNetwork |               MeanShift |
|   RANSACRegression | PassiveAgressiveClassifier |                  OPTICS |
|       DecisionTree |                 Perceptron |                KMedoids |
|          ExtraTree |               BernoulliRBM |                    ---- |
|       RandomForest |           BoltzmannMachine |                    ---- |
|         ExtraTrees |       CalibratedClassifier |                    ---- |
|                SVM |                   Adaboost |                    ---- |
|          LinearSVM |                    Bagging |                    ---- |
|              NuSVM |           GradientBoosting |                    ---- |
|    NearestNeighbor |        BernoulliNaiveBayes |                    ---- |
|      NeuralNetwork |      CategoricalNaiveBayes |                    ---- |
|         ElasticNet |       ComplementNaiveBayes |                    ---- |
|       BernoulliRBM |         GaussianNaiveBayes |                    ---- |
|   BoltzmannMachine |      MultinomialNaiveBayes |                    ---- |
|           Adaboost |                       ---- |                    ---- |
|            Bagging |                       ---- |                    ---- |
|   GradientBoosting |                       ---- |                    ---- |
+--------------------+----------------------------+-------------------------+For auto ML:ImageClassifierTextClassifierImageRegressorTextRegressorStructeredDataClassifierStructeredDataRegressorAutoModelQuick StartThe help command is very useful to check supported commands and corresponding args/options$igel--helpYou can also run help on sub-commands, for example:$igelfit--helpIgel is highly customizable. If you know what you want and want to configure your model manually,
then check the next sections, which will guide you on how to write a yaml or a json config file.
After that, you just have to tell igel, what to do and where to find your data and config file.
Here is an example:$igelfit--data_path'path_to_your_csv_dataset.csv'--yaml_path'path_to_your_yaml_file.yaml'However, you can also use the auto-ml features and let igel do everything for you.
A great example for this would be image classification. Let’s imagine you already have a dataset
of raw images stored in a folder calledimagesAll you have to do is run:$igelauto-train--data_path'path_to_your_images_folder'--taskImageClassificationThat’s it! Igel will read the images from the directory,
process the dataset (converting to matrices, rescale, split, etc…) and start training/optimizing
a model that works good on your data. As you can see it’s pretty easy, you just have to provide the path
to your data and the task you want to perform.NoteThis feature is computationally expensive as igel would try many
different models and compare their performance in order to find the ‘best’ one.UsageYou can run the help command to get instructions. You can also run help on sub-commands!$igel--helpConfiguration StepFirst step is to provide a yaml file (you can also use json if you want)You can do this manually by creating a .yaml file (called igel.yaml by convention but you can name if whatever you want)
and editing it yourself.
However, if you are lazy (and you probably are, like me :D), you can use the igel init command to get started fast,
which will create a basic config file for you on the fly."""
igel init --help


Example:
If I want to use neural networks to classify whether someone is sick or not using the indian-diabetes dataset,
then I would use this command to initialize a yaml file n.b. you may need to rename outcome column in .csv to sick:$igelinit-type"classification"-model"NeuralNetwork"-target"sick""""$igelinitAfter running the command, an igel.yaml file will be created for you in the current working directory. You can
check it out and modify it if you want to, otherwise you can also create everything from scratch.Demo:# model definitionmodel:# in the type field, you can write the type of problem you want to solve. Whether regression, classification or clustering# Then, provide the algorithm you want to use on the data. Here I'm using the random forest algorithmtype:classificationalgorithm:RandomForest# make sure you write the name of the algorithm in pascal casearguments:n_estimators:100# here, I set the number of estimators (or trees) to 100max_depth:30# set the max_depth of the tree# target you want to predict# Here, as an example, I'm using the famous indians-diabetes dataset, where I want to predict whether someone have diabetes or not.# Depending on your data, you need to provide the target(s) you want to predict heretarget:-sickIn the example above, I’m using random forest to classify whether someone have
diabetes or not depending on some features in the dataset
I used the famous indian diabetes in this exampleindian-diabetes dataset)Notice that I passedn_estimatorsandmax_depthas additional arguments to the model.
If you don’t provide arguments then the default will be used.
You don’t have to memorize the arguments for each model. You can always runigel modelsin your terminal, which will
get you to interactive mode, where you will be prompted to enter the model you want to use and type of the problem
you want to solve. Igel will then show you information about the model and a link that you can follow to see
a list of available arguments and how to use these.TrainingThe expected way to use igel is from terminal (igel CLI):Run this command in terminal to fit/train a model, where you provide thepath to your datasetand thepath to the yaml file$igelfit--data_path'path_to_your_csv_dataset.csv'--yaml_path'path_to_your_yaml_file.yaml'#orshorter$igelfit-dp'path_to_your_csv_dataset.csv'-yml'path_to_your_yaml_file.yaml'"""
That's it. Your "trained" model can be now found in the model_results folder(automatically created for you in your current working directory).
Furthermore, a description can be found in the description.json file inside the model_results folder.
"""Demo:EvaluationYou can then evaluate the trained/pre-fitted model:$igelevaluate-dp'path_to_your_evaluation_dataset.csv'"""
This will automatically generate an evaluation.json file in the current directory, where all evaluation results are stored
"""Demo:PredictionFinally, you can use the trained/pre-fitted model to make predictions if you are happy with the evaluation results:$igelpredict-dp'path_to_your_test_dataset.csv'"""
This will generate a predictions.csv file in your current directory, where all predictions are stored in a csv file
"""Demo:ExperimentYou can combine the train, evaluate and predict phases using one single command called experiment:$igelexperiment-DP"path_to_train_data path_to_eval_data path_to_test_data"-yml"path_to_yaml_file""""
This will run fit using train_data, evaluate using eval_data and further generate predictions using the test_data
"""Demo:Use igel from python (instead of terminal)Alternatively, you can also write code if you want to:fromigelimportIgelIgel(cmd="fit",data_path="path_to_your_dataset",yaml_path="path_to_your_yaml_file")"""
check the examples folder for more
"""Serve the modelThe next step is to use your model in production. Igel helps you with this task too by providing the serve command.
Running the serve command will tell igel to serve your model. Precisely, igel will automatically build
a REST server and serve your model on a specific host and port, which you can configure by passing these as
cli options.The easiest way is to run:$igelserve--model_results_dir"path_to_model_results_directory"Notice that igel needs the–model_results_diror shortly -res_dir cli option in order to load the model and start the server.
By default, igel will serve your model onlocalhost:8000, however, you can easily override this by providing a host
and a port cli options.$igelserve--model_results_dir"path_to_model_results_directory"--host"127.0.0.1"--port8000Igel usesFastAPIfor creating the REST server, which is a modern high performance
framework
anduvicornto run it under the hood.Use igel from python (instead of terminal)Alternatively, you can also write code if you want to:fromigelimportIgelIgel(cmd="fit",data_path="path_to_your_dataset",yaml_path="path_to_your_yaml_file")"""
check the examples folder for more
"""OverviewThe main goal of igel is to provide you with a way to train/fit, evaluate and use models without writing code.
Instead, all you need is to provide/describe what you want to do in a simple yaml file.Basically, you provide description or rather configurations in the yaml file as key value pairs.
Here is an overview of all supported configurations (for now):# dataset operationsdataset:type:csv# [str] -> type of your datasetread_data_options:# options you want to supply for reading your data (See the detailed overview about this in the next section)sep:# [str] -> Delimiter to use.delimiter:# [str] -> Alias for sep.header:# [int, list of int] -> Row number(s) to use as the column names, and the start of the data.names:# [list] -> List of column names to useindex_col:# [int, str, list of int, list of str, False] -> Column(s) to use as the row labels of the DataFrame,usecols:# [list, callable] -> Return a subset of the columnssqueeze:# [bool] -> If the parsed data only contains one column then return a Series.prefix:# [str] -> Prefix to add to column numbers when no header, e.g. ‘X’ for X0, X1, …mangle_dupe_cols:# [bool] -> Duplicate columns will be specified as ‘X’, ‘X.1’, …’X.N’, rather than ‘X’…’X’. Passing in False will cause data to be overwritten if there are duplicate names in the columns.dtype:# [Type name, dict maping column name to type] -> Data type for data or columnsengine:# [str] -> Parser engine to use. The C engine is faster while the python engine is currently more feature-complete.converters:# [dict] -> Dict of functions for converting values in certain columns. Keys can either be integers or column labels.true_values:# [list] -> Values to consider as True.false_values:# [list] -> Values to consider as False.skipinitialspace:# [bool] -> Skip spaces after delimiter.skiprows:# [list-like] -> Line numbers to skip (0-indexed) or number of lines to skip (int) at the start of the file.skipfooter:# [int] -> Number of lines at bottom of file to skipnrows:# [int] -> Number of rows of file to read. Useful for reading pieces of large files.na_values:# [scalar, str, list, dict] ->  Additional strings to recognize as NA/NaN.keep_default_na:# [bool] ->  Whether or not to include the default NaN values when parsing the data.na_filter:# [bool] -> Detect missing value markers (empty strings and the value of na_values). In data without any NAs, passing na_filter=False can improve the performance of reading a large file.verbose:# [bool] -> Indicate number of NA values placed in non-numeric columns.skip_blank_lines:# [bool] -> If True, skip over blank lines rather than interpreting as NaN values.parse_dates:# [bool, list of int, list of str, list of lists, dict] ->  try parsing the datesinfer_datetime_format:# [bool] -> If True and parse_dates is enabled, pandas will attempt to infer the format of the datetime strings in the columns, and if it can be inferred, switch to a faster method of parsing them.keep_date_col:# [bool] -> If True and parse_dates specifies combining multiple columns then keep the original columns.dayfirst:# [bool] -> DD/MM format dates, international and European format.cache_dates:# [bool] -> If True, use a cache of unique, converted dates to apply the datetime conversion.thousands:# [str] -> the thousands operatordecimal:# [str] -> Character to recognize as decimal point (e.g. use ‘,’ for European data).lineterminator:# [str] -> Character to break file into lines.escapechar:# [str] ->  One-character string used to escape other characters.comment:# [str] -> Indicates remainder of line should not be parsed. If found at the beginning of a line, the line will be ignored altogether. This parameter must be a single character.encoding:# [str] -> Encoding to use for UTF when reading/writing (ex. ‘utf-8’).dialect:# [str, csv.Dialect] -> If provided, this parameter will override values (default or not) for the following parameters: delimiter, doublequote, escapechar, skipinitialspace, quotechar, and quotingdelim_whitespace:# [bool] -> Specifies whether or not whitespace (e.g. ' ' or '    ') will be used as the seplow_memory:# [bool] -> Internally process the file in chunks, resulting in lower memory use while parsing, but possibly mixed type inference.memory_map:# [bool] -> If a filepath is provided for filepath_or_buffer, map the file object directly onto memory and access the data directly from there. Using this option can improve performance because there is no longer any I/O overhead.random_numbers:# random numbers options in case you wanted to generate the same random numbers on each rungenerate_reproducible:# [bool] -> set this to true to generate reproducible resultsseed:# [int] -> the seed number is optional. A seed will be set up for you if you didn't provide anysplit:# split optionstest_size:0.2#[float] -> 0.2 means 20% for the test data, so 80% are automatically for trainingshuffle:true# [bool] -> whether to shuffle the data before/while splittingstratify:None# [list, None] -> If not None, data is split in a stratified fashion, using this as the class labels.preprocess:# preprocessing optionsmissing_values:mean# [str] -> other possible values: [drop, median, most_frequent, constant] check the docs for moreencoding:type:oneHotEncoding# [str] -> other possible values: [labelEncoding]scale:# scaling optionsmethod:standard# [str] -> standardization will scale values to have a 0 mean and 1 standard deviation  | you can also try minmaxtarget:inputs# [str] -> scale inputs. | other possible values: [outputs, all] # if you choose all then all values in the dataset will be scaled# model definitionmodel:type:classification# [str] -> type of the problem you want to solve. | possible values: [regression, classification, clustering]algorithm:NeuralNetwork# [str (notice the pascal case)] -> which algorithm you want to use. | type igel algorithms in the Terminal to know morearguments:# model arguments: you can check the available arguments for each model by running igel help in your terminaluse_cv_estimator:false# [bool] -> if this is true, the CV class of the specific model will be used if it is supportedcross_validate:cv:# [int] -> number of kfold (default 5)n_jobs:# [signed int] -> The number of CPUs to use to do the computation (default None)verbose:# [int] -> The verbosity level. (default 0)hyperparameter_search:method:grid_search# method you want to use: grid_search and random_search are supportedparameter_grid:# put your parameters grid here that you want to use, an example is provided belowparam1:[val1,val2]param2:[val1,val2]arguments:# additional arguments you want to provide for the hyperparameter searchcv:5# number of foldsrefit:true# whether to refit the model after the searchreturn_train_score:false# whether to return the train scoreverbose:0# verbosity level# target you want to predicttarget:# list of strings: basically put here the column(s), you want to predict that exist in your csv dataset-put the target you want to predict here-you can assign many target if you are making a multioutput predictionRead Data OptionsNoteigel uses pandas under the hood to read & parse the data. Hence, you can
find this data optional parameters also in the pandas official documentation.A detailed overview of the configurations you can provide in the yaml (or json) file is given below.
Notice that you will certainly not need all the configuration values for the dataset. They are optional.
Generally, igel will figure out how to read your dataset.However, you can help it by providing extra fields using this read_data_options section.
For example, one of the helpful values in my opinion is the “sep”, which defines how your columns
in the csv dataset are separated. Generally, csv datasets are separated by commas, which is also the default value
here. However, it may be separated by a semicolon in your case.Hence, you can provide this in the read_data_options. Just add thesep: ";"under read_data_options.Supported Read Data OptionsParameterTypeExplanationsepstr, default ‘,’Delimiter to use. If sep is None, the C engine cannot automatically detect the separator, but the Python parsing engine can, meaning the latter will be used and automatically detect the separator by Python’s builtin sniffer tool, csv.Sniffer. In addition, separators longer than 1 character and different from ‘s+’ will be interpreted as regular expressions and will also force the use of the Python parsing engine. Note that regex delimiters are prone to ignoring quoted data. Regex example: ‘rt’.delimiterdefault NoneAlias for sep.headerint, list of int, default ‘infer’Row number(s) to use as the column names, and the start of the data. Default behavior is to infer the column names: if no names are passed the behavior is identical to header=0 and column names are inferred from the first line of the file, if column names are passed explicitly then the behavior is identical to header=None. Explicitly pass header=0 to be able to replace existing names. The header can be a list of integers that specify row locations for a multi-index on the columns e.g. [0,1,3]. Intervening rows that are not specified will be skipped (e.g. 2 in this example is skipped). Note that this parameter ignores commented lines and empty lines if skip_blank_lines=True, so header=0 denotes the first line of data rather than the first line of the file.namesarray-like, optionalList of column names to use. If the file contains a header row, then you should explicitly pass header=0 to override the column names. Duplicates in this list are not allowed.index_colint, str, sequence of int / str, or False, default NoneColumn(s) to use as the row labels of the DataFrame, either given as string name or column index. If a sequence of int / str is given, a MultiIndex is used. Note: index_col=False can be used to force pandas to not use the first column as the index, e.g. when you have a malformed file with delimiters at the end of each line.usecolslist-like or callable, optionalReturn a subset of the columns. If list-like, all elements must either be positional (i.e. integer indices into the document columns) or strings that correspond to column names provided either by the user in names or inferred from the document header row(s). For example, a valid list-like usecols parameter would be [0, 1, 2] or [‘foo’, ‘bar’, ‘baz’]. Element order is ignored, so usecols=[0, 1] is the same as [1, 0]. To instantiate a DataFrame from data with element order preserved use pd.read_csv(data, usecols=[‘foo’, ‘bar’])[[‘foo’, ‘bar’]] for columns in [‘foo’, ‘bar’] order or pd.read_csv(data, usecols=[‘foo’, ‘bar’])[[‘bar’, ‘foo’]] for [‘bar’, ‘foo’] order. If callable, the callable function will be evaluated against the column names, returning names where the callable function evaluates to True. An example of a valid callable argument would be lambda x: x.upper() in [‘AAA’, ‘BBB’, ‘DDD’]. Using this parameter results in much faster parsing time and lower memory usage.squeezebool, default FalseIf the parsed data only contains one column then return a Series.prefixstr, optionalPrefix to add to column numbers when no header, e.g. ‘X’ for X0, X1, …mangle_dupe_colsbool, default TrueDuplicate columns will be specified as ‘X’, ‘X.1’, …’X.N’, rather than ‘X’…’X’. Passing in False will cause data to be overwritten if there are duplicate names in the columns.dtype{‘c’, ‘python’}, optionalParser engine to use. The C engine is faster while the python engine is currently more feature-complete.convertersdict, optionalDict of functions for converting values in certain columns. Keys can either be integers or column labels.true_valueslist, optionalValues to consider as True.false_valueslist, optionalValues to consider as False.skipinitialspacebool, default FalseSkip spaces after delimiter.skiprowslist-like, int or callable, optionalLine numbers to skip (0-indexed) or number of lines to skip (int) at the start of the file. If callable, the callable function will be evaluated against the row indices, returning True if the row should be skipped and False otherwise. An example of a valid callable argument would be lambda x: x in [0, 2].skipfooterint, default 0Number of lines at bottom of file to skip (Unsupported with engine=’c’).nrowsint, optionalNumber of rows of file to read. Useful for reading pieces of large files.na_valuesscalar, str, list-like, or dict, optionalAdditional strings to recognize as NA/NaN. If dict passed, specific per-column NA values. By default the following values are interpreted as NaN: ‘’, ‘#N/A’, ‘#N/A N/A’, ‘#NA’, ‘-1.#IND’, ‘-1.#QNAN’, ‘-NaN’, ‘-nan’, ‘1.#IND’, ‘1.#QNAN’, ‘<NA>’, ‘N/A’, ‘NA’, ‘NULL’, ‘NaN’, ‘n/a’, ‘nan’, ‘null’.keep_default_nabool, default TrueWhether or not to include the default NaN values when parsing the data. Depending on whether na_values is passed in, the behavior is as follows: If keep_default_na is True, and na_values are specified, na_values is appended to the default NaN values used for parsing. If keep_default_na is True, and na_values are not specified, only the default NaN values are used for parsing. If keep_default_na is False, and na_values are specified, only the NaN values specified na_values are used for parsing. If keep_default_na is False, and na_values are not specified, no strings will be parsed as NaN. Note that if na_filter is passed in as False, the keep_default_na and na_values parameters will be ignored.na_filterbool, default TrueDetect missing value markers (empty strings and the value of na_values). In data without any NAs, passing na_filter=False can improve the performance of reading a large file.verbosebool, default FalseIndicate number of NA values placed in non-numeric columns.skip_blank_linesbool, default TrueIf True, skip over blank lines rather than interpreting as NaN values.parse_datesbool or list of int or names or list of lists or dict, default FalseThe behavior is as follows: boolean. If True -> try parsing the index. list of int or names. e.g. If [1, 2, 3] -> try parsing columns 1, 2, 3 each as a separate date column. list of lists. e.g. If [[1, 3]] -> combine columns 1 and 3 and parse as a single date column. dict, e.g. {‘foo’ : [1, 3]} -> parse columns 1, 3 as date and call result ‘foo’ If a column or index cannot be represented as an array of datetimes, say because of an unparseable value or a mixture of timezones, the column or index will be returned unaltered as an object data type.infer_datetime_formatbool, default FalseIf True and parse_dates is enabled, pandas will attempt to infer the format of the datetime strings in the columns, and if it can be inferred, switch to a faster method of parsing them. In some cases this can increase the parsing speed by 5-10x.keep_date_colbool, default FalseIf True and parse_dates specifies combining multiple columns then keep the original columns.date_parserfunction, optionalFunction to use for converting a sequence of string columns to an array of datetime instances. The default uses dateutil.parser.parser to do the conversion. Pandas will try to call date_parser in three different ways, advancing to the next if an exception occurs: 1) Pass one or more arrays (as defined by parse_dates) as arguments; 2) concatenate (row-wise) the string values from the columns defined by parse_dates into a single array and pass that; and 3) call date_parser once for each row using one or more strings (corresponding to the columns defined by parse_dates) as arguments.dayfirstbool, default FalseDD/MM format dates, international and European format.cache_datesbool, default TrueIf True, use a cache of unique, converted dates to apply the datetime conversion. May produce significant speed-up when parsing duplicate date strings, especially ones with timezone offsets.thousandsstr, optionalThousands separator.decimalstr, default ‘.’Character to recognize as decimal point (e.g. use ‘,’ for European data).lineterminatorstr (length 1), optionalCharacter to break file into lines. Only valid with C parser.escapecharstr (length 1), optionalOne-character string used to escape other characters.commentstr, optionalIndicates remainder of line should not be parsed. If found at the beginning of a line, the line will be ignored altogether.encodingstr, optionalEncoding to use for UTF when reading/writing (ex. ‘utf-8’).dialectstr or csv.Dialect, optionalIf provided, this parameter will override values (default or not) for the following parameters: delimiter, doublequote, escapechar, skipinitialspace, quotechar, and quotinglow_memorybool, default TrueInternally process the file in chunks, resulting in lower memory use while parsing, but possibly mixed type inference. To ensure no mixed types either set False, or specify the type with the dtype parameter. Note that the entire file is read into a single DataFrame regardless,memory_mapbool, default Falsemap the file object directly onto memory and access the data directly from there. Using this option can improve performance because there is no longer any I/O overhead.E2E ExampleA complete end to end solution is provided in this section to prove the capabilities ofigel.
As explained previously, you need to create a yaml configuration file. Here is an end to end example for
predicting whether someone have diabetes or not using thedecision treealgorithm. The dataset can be found in the examples folder.Fit/Train a model:model:type:classificationalgorithm:DecisionTreetarget:-sick$igelfit-dppath_to_the_dataset-ymlpath_to_the_yaml_fileThat’s it, igel will now fit the model for you and save it in a model_results folder in your current directory.Evaluate the model:Evaluate the pre-fitted model. Igel will load the pre-fitted model from the model_results directory and evaluate it for you.
You just need to run the evaluate command and provide the path to your evaluation data.$igelevaluate-dppath_to_the_evaluation_datasetThat’s it! Igel will evaluate the model and store statistics/results in anevaluation.jsonfile inside the model_results folderPredict:Use the pre-fitted model to predict on new data. This is done automatically by igel, you just need to provide the
path to your data that you want to use prediction on.$igelpredict-dppath_to_the_new_datasetThat’s it! Igel will use the pre-fitted model to make predictions and save it in apredictions.csvfile inside the model_results folderAdvanced UsageYou can also carry out some preprocessing methods or other operations by providing them in the yaml file.
Here is an example, where the data is split to 80% for training and 20% for validation/testing.
Also, the data are shuffled while splitting.Furthermore, the data are preprocessed by replacing missing values with the mean ( you can also use median, mode etc..).
checkthis linkfor more information# dataset operationsdataset:split:test_size:0.2shuffle:Truestratify:defaultpreprocess:# preprocessing optionsmissing_values:mean# other possible values: [drop, median, most_frequent, constant] check the docs for moreencoding:type:oneHotEncoding# other possible values: [labelEncoding]scale:# scaling optionsmethod:standard# standardization will scale values to have a 0 mean and 1 standard deviation  | you can also try minmaxtarget:inputs# scale inputs. | other possible values: [outputs, all] # if you choose all then all values in the dataset will be scaled# model definitionmodel:type:classificationalgorithm:RandomForestarguments:# notice that this is the available args for the random forest model. check different available args for all supported models by running igel helpn_estimators:100max_depth:20# target you want to predicttarget:-sickThen, you can fit the model by running the igel command as shown in the other examples$igelfit-dppath_to_the_dataset-ymlpath_to_the_yaml_fileFor evaluation$igelevaluate-dppath_to_the_evaluation_datasetFor production$igelpredict-dppath_to_the_new_datasetExamplesIn the examples folder in the repository, you will find a data folder,where the famous indian-diabetes, iris dataset
and the linnerud (from sklearn) datasets are stored.
Furthermore, there are end to end examples inside each folder, where there are scripts and yaml files that
will help you get started.The indian-diabetes-example folder contains two examples to help you get started:The first example is using aneural network, where the configurations are stored in the neural-network.yaml fileThe second example is using arandom forest, where the configurations are stored in the random-forest.yaml fileThe iris-example folder contains alogistic regressionexample, where some preprocessing (one hot encoding)
is conducted on the target column to show you more the capabilities of igel.Furthermore, the multioutput-example contains amultioutput regressionexample.
Finally, the cv-example contains an example using the Ridge classifier using cross validation.You can also find a cross validation and a hyperparameter search examples in the folder.I suggest you play around with the examples and igel cli. However,
you can also directly execute the fit.py, evaluate.py and predict.py if you want to.Auto ML ExamplesImageClassificationFirst, create or modify a dataset of images that are categorized into sub-folders based on the image label/class
For example, if you are have dogs and cats images, then you will need 2 sub-folders:folder 0, which contains cats images (here the label 0 indicates a cat)folder 1, which contains dogs images (here the label 1 indicates a dog)Assuming these two sub-folder are contained in one parent folder called images, just feed data to igel:$igelauto-train-dp./images--taskImageClassificationIgel will handle everything from pre-processing the data to optimizing hyperparameters. At the end,
the best model will be stored in the current working dir.TextClassificationFirst, create or modify a text dataset that are categorized into sub-folders based on the text label/class
For example, if you are have a text dataset of positive and negative feedbacks, then you will need 2 sub-folders:folder 0, which contains negative feedbacks (here the label 0 indicates a negative one)folder 1, which contains positive feedbacks (here the label 1 indicates a positive one)Assuming these two sub-folder are contained in one parent folder called texts, just feed data to igel:$igelauto-train-dp./texts--taskTextClassificationIgel will handle everything from pre-processing the data to optimizing hyperparameters. At the end,
the best model will be stored in the current working dir.GUIYou can also run the igel UI if you are not familiar with the terminal. Just install igel on your machine
as mentioned above. Then run this single command in your terminal$igelguiThis will open up the gui, which is very simple to use. Check examples of how the gui looks like and how to use it
here:https://github.com/nidhaloff/igel-uiRunning with DockerUse the official image (recommended):You can pull the image first from docker hub$dockerpullnidhaloff/igelThen use it:$dockerrun-it--rm-v$(pwd):/datanidhaloff/igelfit-yml'your_file.yaml'-dp'your_dataset.csv'Alternatively, you can create your own image locally if you want:You can run igel inside of docker by first building the image:$dockerbuild-tigel.And then running it and attaching your current directory (does not need to be the igel directory) as /data (the workdir) inside of the container:$dockerrun-it--rm-v$(pwd):/dataigelfit-yml'your_file.yaml'-dp'your_dataset.csv'LinksArticle:https://medium.com/@nidhalbacc/machine-learning-without-writing-code-984b238dd890Help/GetHelpIf you are facing any problems, please feel free to open an issue.
Additionally, you can make contact with the author for further information/questions.Do you like igel?
You can always help the development of this project by:Following on github and/or twitterStar the github repoWatch the github repo for new releasesTweet about the packageHelp others with issues on githubCreate issues and pull requestsSponsor the projectContributionsYou think this project is useful and you want to bring new ideas, new features, bug fixes, extend the docs?Contributions are always welcome.
Make sure you readthe guidelinesfirstLicenseMIT licenseCopyright (c) 2020-present, Nidhal Baccouri