Package: grnndata
grnndataAwesome gene regulatory network enhanced anndata created by @jkobject & remi trimbourgrnndata works similarly to anndata. The goal was to use the .varm of anndata to store the GRN data associated with a dataset and have a formal way to work with GRNs.grnndata is a subclass of anndata.AnnData, it enforces only that a .varm exists for the anndatagrnndata also contains multiple helper functions to work with GRNs in scRNAseqInstall it from PyPIpipinstallgrnndataUsagegrnndata works similarly to anndataHow do I do if I generate a GRN per cell type?In this context, we recommend creating a grnndata per cell type. This will allow you to store the GRN data in the .varm of the grnndata and have a formal way to work with GRNs.How do I do if I generate a GRN per cell?In this context, we recommend trying to merge them across a similar group of cells in some way and storing uncertainty or variance in the GRN and then creating a grnndata across this group of cellsDevelopmentRead theCONTRIBUTING.mdfile.GNU GENERAL PUBLIC LICENSE
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