Package: galaxy-web-apps
OverviewTheGalaxyweb apps (Galaxy, Reports, Tool Shed).Code:https://github.com/galaxyproject/galaxyHistory23.2.1 (2024-02-21)Bug fixesRename to_dict to populate in FormDefintion to fix bug by@jdavcsin#16553Fix: serializetool_shed_urlsdirectly from the API by@davelopezin#16561chore: fix typos by@afuettererin#16851Restore ToolsApi and create new api route for new panel structure by@ahmedhamidawanin#16872Ruff and flake8 fixes by@nsoranzoin#16884Make payload optional again for create tag API by@nsoranzoin#17144Fix Display Application link generation by@mvdbeekin#17227Display application fixes and tests by@mvdbeekin#17233Respectupstream_gzipsetting  when streaming dataset collection archive by@mvdbeekin#17400Fix history bulk operations menu conditions by@davelopezin#17433Only check access permissions in/api/{history_dataset_collection_id}/contents/{dataset_collection_id}by@mvdbeekin#17459Set metadata states on dataset association, not dataset by@mvdbeekin#17474Provide working routes.url_for every ASGI request by@mvdbeekin#17497EnhancementsTool Shed 2.0 by@jmchiltonin#15639Limit number of celery task executions per second per user by@claudiofrin#16232Delete non-terminal jobs and subworkflow invocations when cancelling invocation by@mvdbeekin#16252Towards SQLAlchemy 2.0 (upgrades to SA Core usage) by@jdavcsin#16264Notifications admin panel by@itisAliRHin#16278Migrate cloud API to Fast API by@heisner-tillmanin#16296Drop (admin only) userskeys controller by@dannonin#16318Migrate a part of the users API to Fast API by@heisner-tillmanin#16341Add Invenio RDM repository integration by@davelopezin#16381Refactor FilesDialog + Remote Files API schema improvements by@davelopezin#16420SQLAlchemy 2.0 upgrades to ORM usage in /lib by@jdavcsin#16434Update Python dependencies by@galaxybotin#16436Published Workflow Sharing Page Overhaul by@ElectronicBlueberryin#16510Tweak tool memory use and optimize shared memory when using preload by@mvdbeekin#16536Update Python dependencies by@galaxybotin#16577Workflow Comments 💬 by@ElectronicBlueberryin#16612Galaxy Markdown - add workflow image and license to Galaxy markdown. by@jmchiltonin#16672Implement instance URLs in Galaxy markdown. by@jmchiltonin#16675Enhance task monitor composable by@davelopezin#16695SQLAlchemy 2.0 upgrades (part 2) by@jdavcsin#16724Migratecollection elementsstore to Pinia by@davelopezin#16725Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by@ahmedhamidawanin#16739Don’t copy collection elements intest_dataset_collection_hide_originalsby@nsoranzoin#16747Drop legacy server-side search by@jdavcsin#16755Migrate a part of the jobs API to Fast API by@heisner-tillmanin#16778Replace file_name property with get_file_name function by@SergeyYakubovin#16783Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by@sveinuguin#16795Galaxy help forum integration by@ElectronicBlueberryin#16798SQLAlchemy 2.0 upgrades (part 4) by@jdavcsin#16852Vueify Visualizations Grid by@guerlerin#16892Changeapi/tool_paneltoapi/tool_panels/…by@ahmedhamidawanin#16928Remove “Create Workflow” form and allow workflow creation in editor by@ahmedhamidawanin#16938Update API tool_panels route conditions by@dannonin#16991Fix invocation report to target correct workflow version. by@jmchiltonin#17008Upgrade job manager’s index_query method to SA2.0 by@jdavcsin#17020Require name for workflows on save, set default to Unnamed Workflow by@ahmedhamidawanin#17038Migrate groups API to fastAPI by@arash77in#17051Migrate ItemTags API to FastAPI by@arash77in#17064Other changesMerge 23.1 into dev by@mvdbeekin#16534Fix succces typo by@mvdbeekin#1748123.1.4 (2024-01-04)Bug fixesProperly clear session on OIDC logout by@guerlerin#1712023.1.3 (2023-12-01)Bug fixesAdd missing optional description field, fixes ephemeris data library example by@mvdbeekin#1711623.1.2 (2023-11-29)Bug fixesProvide error message instead of internal server error by@mvdbeekin#16905Fix input dates in notifications: consider timezone offset by@davelopezin#17088EnhancementsAdd HEAD route to job_files endpoint by@mvdbeekin#1707223.1.1 (2023-10-23)Bug fixesCreate ToolSuccess route and refactor component by@ahmedhamidawanin#15484fix premature return in user API by@martensonin#15781Ensure session is request-scoped for legacy endpoints by@jdavcsin#16207allow anon access for api/datasets/get_content_as_text by@martensonin#16226Fix form builder value handling by@guerlerin#16304Fix tags ownership by@davelopezin#16339Fix histories count by@davelopezin#16400Make datatype edit default value a string instead of list of strings by@mvdbeekin#16591Backport tool mem fixes by@mvdbeekin#16601Optimize getting current user session by@mvdbeekin#16604Drop RecursiveMiddleware by@mvdbeekin#16605List extra files only for terminal datasets by@mvdbeekin#16705Copy the collection contents by default when copying a collection by@mvdbeekin#16717Fix up local tool version handling by@mvdbeekin#16836Fix delete collection + elements by@davelopezin#16879EnhancementsEmpower Users to Select Storage Destination by@jmchiltonin#14073Add Storage Dashboard visualizations for histories by@davelopezin#14820External Login Flow: Redirect users if account already exists by@ahmedhamidawanin#15019Various Tool Shed Cleanup by@jmchiltonin#15247Add Storage Management API by@davelopezin#15295OIDC tokens by@SergeyYakubovin#15300Add support for visualizing HDF5 datasets. by@jarrah42in#15394Towards SQLAlchemy 2.0: drop session autocommit setting by@jdavcsin#15421Update Python dependencies by@galaxybotin#15435Unify url handling with filesources by@nuwangin#15497Explore tool remote test data by@davelopezin#15510Update Python dependencies by@galaxybotin#15564Drop workflow exports to myexperiment.org by@dannonin#15576Add Galaxy Notification System by@davelopezin#15663Mention OpenAPI docs in Galaxy API Documentation by@bernt-matthiasin#15713Fix/Enhance recalculate disk usage API endpoint by@davelopezin#15739Update Python dependencies by@galaxybotin#15890Add History Archival feature by@davelopezin#16003Code cleanups from ruff and pyupgrade by@nsoranzoin#16035Dataset chunking tests (and small fixes) by@jmchiltonin#16069Paginate History Store by@ahmedhamidawanin#16084Allow HEAD request for requesting metadata files by@martensonin#16113Add option to see invocations related to a history by@martensonin#16136Improve histories and datasets immutability checks by@davelopezin#16143Migrate display applications API to Fast API by@heisner-tillmanin#16156adjust grid sharing indicators by@martensonin#16163Remove various fallback behaviors by@mvdbeekin#16199bring grids for (published) pages on par with workflows by@martensonin#16209Small test decorator improvements. by@jmchiltonin#16220Don’t error on missing parameters or unused parameters in UI controllers by@mvdbeekin#16246Update Python dependencies by@galaxybotin#16267Fix Storage Dashboard missing archived histories by@davelopezin#16473Add missing archived filter in saved histories by@davelopezin#16475Drop expunge_all() call in WebTransactionRequest by@mvdbeekin#16606Other changesFollow up on object store selection PR. by@jmchiltonin#15654Tweaks to new object store and quota APIs by@jmchiltonin#15709Fix Enums in API docs by@davelopezin#15740Quota source labelling bug fixes and improvements  by@jmchiltonin#15795merge release_23.0 into dev by@martensonin#15830merge release_23.0 into dev by@martensonin#15854Merge 23.0 into dev by@nsoranzoin#15902Fix recalculate_quota throug kombu message by@mvdbeekin#1629923.0.6 (2023-10-23)Bug fixesFix incorrect ASGI request host by@davelopezin#16574Allow the legacy DELETE dataset endpoint to accept any string for the history_id by@assuntad23in#1659323.0.5 (2023-07-29)Bug fixesFix active step display in workflow editor side panel by@mvdbeekin#1636423.0.4 (2023-06-30)Bug fixesFix folder access for anonymous user by@mvdbeekin#1633023.0.3 (2023-06-26)Bug fixesFix converting Enum value to str for Python 3.11 by@nsoranzoin#16284EnhancementsWhen importing tool data bundles, use the first loc file for the matching table by@natefooin#1624723.0.2 (2023-06-13)No recorded changes since last release23.0.1 (2023-06-08)Bug fixesDisplay DCE in job parameter component, allow rerunning with DCE input by@mvdbeekin#15744Various fixes to path prefix handling by@mvdbeekin#16033Fix dataype_change not updating HDCA update_time by@mvdbeekin#16099Ignore invalid query params in display_by_username_and_slug by@mvdbeekin#1611720.5.0 (2020-07-04)First release from the 20.05 branch of Galaxy.