Package: farseernmr
Attention Attention AttentionWe are currently rewriting Farseer-NMR towardsversion 2.Version 1is still functional and working, though not much supported apart from minor bugs. You can download the latest stable version, v1.3.5, on thereleases tab, or visit the complete version 1 code and its documentation inversion 1 branch) on GitHub.Our original publication is available atJBioMolNMR), cite us if you use Farseer-NMR for your research, regardless of which version you use.Please note that themaster branch) currently hosts the development of version 2, which is UNFINISHED software; again, please, refer toversion 1for a stable and functional release.Farseer-NMR runs purely on volunteer work without any official assigned funds. All help is welcomed,engage with us)!Attention Attention AttentionA Python written, multi-platform and fully community-driven suite to analyse datasets ofpeaklist filesextracted from multivariable series of Biomolecular Nuclear Magnetic Resonance (NMR) experiments.With Farseer-NMR, you have:Automatic analysis of large and multivariable NMRpeaklist filesdatasetsPeaklist parsing and treatmentIdentification of _missing_ and _unassigned_ residuesAutomatic calculation of NMR parametersComprehensive organization of the outputLarge suite of publication-ready plotting templatesFull traceability viaMarkdown) formatted log file.Download, Install and UpdateDownload here the latest version of Farseer-NMR..To install Farseer-NMR simply run the installation script:python install_farseernmr.pyReadheresome additional detail on how to setup your Farseer-NMR installation - it’s very easy!DocumentationThe complete Farseer-NMR documentation is available on ourWiki page.Participate in the Farseer-NMR developmentTo contribute to the development of Farseer-NMRvisit our GitHub project). If you are a user, share your experience in the issues tab (reporting bugs, suggestions or discussions); if you are a developer read ourCONTRIBUTING) guidelines.Social MediaPost on ourmailing list) for questions, discussion and help!Follow us on Twitter@farseer_nmr)Find us onResearch Gate), where our seminars PDFs are available!CitingThanks for using Farseer-NMR!If you are using Farseer-NMR, or any of its components, to analyze your NMR peaklist data,please cite our original article:Teixeira, J.M.C., Skinner, S.P., Arbesú, M., Breeze, A.L., Pons, M.J Biomol NMR(2018) 71:1, 1-9. DOI10.1007/s10858-018-0182-5)Publications citing Farseer-NMRMiguel Arbesú, MiquelPons. Integrating disorder in globular multidomain proteins: Fuzzy sensors and the role of SH3 domains. Archives of Biochemistry and Biophysics 2019, 677, 108161https://doi.org/10.1016/j.abb.2019.108161.Luca Mureddu, Geerten W. Vuister. Simple high‐resolution NMR spectroscopy as a tool in molecular biology. The FEBS Journal 2019, 286, issue 11, p2035https://doi.org/10.1111/febs.14771.Teixeira, J.M.C.; Fuentes, H.; Bielskutė, S.; Gairi, M.; Żerko, S.; Koźmiński, W.; Pons, M. The Two Isoforms of Lyn Display Different Intramolecular Fuzzy Complexes with the SH3 Domain. Molecules 2018, 23, 2731.https://doi.org/10.3390/molecules23112731)Arbesú, M.; Iruela, G.; Fuentes, H.; Teixeira, J.M.C.; Pons, M. Intramolecular fuzzy interactions involving intrinsically disordered domains. Front. Mol. Biosci. 2018, 5, 39.DOI 10.3389/fmolb.2018.00039)Arbesú, M. et al. (2017) The Unique Domain Forms a Fuzzy Intramolecular Complex in Src Family Kinases. Structure 25, 630–640.e4.10.1016/j.str.2017.02.011)Marimon, O. et. al. (2016). An oxygen-sensitive toxin–antitoxin system. Nature Communications, 7, 13634.https://doi.org/10.1038/ncomms13634)Bijlmakers, M.-J., et.al. (2015) A C2HC zinc finger is essential for the RING-E2 interaction of the ubiquitin ligase RNF125. Scientific Reports, 6, 29232.https://doi.org/10.1038/srep29232)Farseer-NMR on Google Citations)
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.. start-acknowledgeAcknowledgmentsThe Farseer-NMR Project wants to acknowledge to following people for their contributions to the project:Susana Barrera-Vilarmau ([ORCID 0000-0003-4868-6593](https://orcid.org/0000-0003-4868-6593)): beta-tester, data provider, plot suggestions.Jamie Ferrar, [Artistic Systems](https://twitter.com/artisticsystems): for providing the UI branding.[João P.G.L.M. Rodrigues](https://github.com/JoaoRodrigues): for all the years of coding discussions and mentorship, and in particular for the help in setting the Farseer-NMR organization profile on GitHub.Héctor Fuentes: intensive beta-tester, specially for the Windows version.To all the users and participants of the Farseer-NMR workshops, thanks for your feedback, opinions, testing, interest and patience. Your contribution is definitively making Farseer-NMR growing bigger and robust! Special thanks to:[Micael Silva (Nova University of Lisbon)](https://www.researchgate.net/profile/Micael_Silva)[Wouter Elings (Leiden University)](https://www.universiteitleiden.nl/en/staffmembers/wouter-elings#tab-1)LicenseThe entire Farseer-NMR project is distributed with no liability and is licensed under theGPL-3.0.<a href=”https://www.gnu.org/licenses/gpl-3.0.en.html”><img src=”https://upload.wikimedia.org/wikipedia/commons/thumb/9/93/GPLv3_Logo.svg/1200px-GPLv3_Logo.svg.png” width=”75” height=”37”></a>VersioningThis project follows strictlySemantic Versioning 2.0for version control.Changelogv2under developmentadded configuration files for CI and deploymentconfigured tox.iniconfigured Travis-CI multiplaform, multi Python CI #316v1For list of v1 releases visitproject releases.Latest v1 release hosted inversion1branch.v0pre-publication no JBioNMR, changes not tracked in detail.