Package: eke.study
This product,eke.study, provides display and RDF ingest of participating
studies and medical protocols that are being executed, will be executed, or
have been executed by the Early Detection Research Network (EDRN).  Studies
and protocols are the major research efforts (and therefore funded entities)
that EDRN researchers pursue, and therefore are a vital component of the EDRN
Knowledge Environment (EKE).  EDRN uses the EKE to make it easy to discover,
share, search for, and retrieve all of EDRN’s collective knowledge, including
cancers and other diseases, biomarkers, specimens, participants, staff, and-as
in the case of this product-studies and protocols.Although intended for the EDRN public portal, it can be installed in anyPlonecompatible site.This software is developed by theEDRN Informatics CenteratJPL,
operated by the California Institute of Technology, forNCI.Note for Developers: Tests for this package do not work correctly under the
RoadRunner.  Use the standard instance test runner instead.  (It’s not the
fault of the RoadRunner; it has to do with co-dependency of this project with
eke.biomarker).InstallationUseBuildoutwith the plone.recipe.zope2instance recipe.Addeke.studyto the list of eggs to install, e.g.:[buildout]
...
eggs =
    ...
    eke.studyRe-run buildout, e.g. with:% ./bin/buildoutYou can skip the ZCML slug if you are going to explicitly include the package
from another package’s configure.zcml file.ChangelogA retrospective of the various releases this component has had, what’s been
changed, what’s been fixed, and so forth, follows.  For issue IDs mentioned
below, see the issue tracker athttps://oodt.jpl.nasa.gov/jira/browse/CA1.1.18 — Plone 4.3.9 UpgradeCA-15921.1.17 — Let’s Get Involved!CA-1492 - Need to include involved investigators in Investigator and Protocol pages1.1.16 — You’re Not That VainCA-1492 - Involved investigator sites not appearing on protocolsCA-1497 - Duplicates appearing in involved investigator sitesCA-1498 - Add anchors for biomarkers and science dataCA-1450 - eke.study ingest should honorhttp://edrn.nci.nih.gov/rdf/schema.rdf#projectFlag1.1.15 — Werk WerkCA-1436 - Collaborative Group Workspaces - Separate Projects and ProtocolsCA-1437 - Portal upgrade clears “project” flag1.1.14 — Bad DataCA-1430 - Portal cannot ingest protocol #01.1.13 — Bug FixesCA-1300CA-1292CA-13021.1.12 — I Had Some Chicken; Pass Me the FLOSSFirst official release as free/libre/open source software.1.1.11 — Let’s TalkCA-1229 - Discussion re-enabled after upgrade1.1.10 — Non-EDRN Protocols and Non-EDRN ProtocolsCA-1122 - Indicate if Protocol is not an EDRN ProtocolCA-1148 - Remove description from Protocols it’s duplicated in the abstract1.1.9 — Closing Security HolesMade compatible with Plone 4.3.1.1.8 — More UpgradesMade compatible with Plone 4.2.41.1.7 — Unicode, AgainCA-1005 - Non-US-ASCII characters in protocol title causes catalog rebuild
to fail.1.1.6 — UpgradesMade compatible with Plone 4.1.5 and eea.facetednavigation 4.5.  Also,
addressed the following issues:CA-965 - Log the upgrade processCA-978 - eke.study can’t handle RDF with duplicate protocol titles1.1.5 — Test SupportThis release includes:Depending on just Plone the framework instead of Plone the application.Working around null dataset names and investigator names.1.1.4 — Permanently adds 15 resilience to a shoulder slot itemThis release makes functional tests even more resilient.1.1.3 — Adds 40 Resilience RatingThis release makes functional tests more resilient.1.1.2 — Yay Team!This release expands on team projects, adding an index for projects, badging
of projects, and a vocabulary to enumerate them.  Also, during RDF ingest, it
connects protocols to collaborative groups.1.1.1 — Upgrade CleanupThis release updates the GenericSetup profile to 4, provides upgrade steps to
that profile, and makes the testing and development harness depend on “trunk”
level of other eggs instead of on released versions of those eggs.  Also, it
removes in incompatible profile dependency.1.1.0 — Plone 4This release makes eke.study compatible with Plone 4.1.0.2 — A Mixed BagThis release fixes a couple of issues:CA-583 - Add PDFs to ProtocolsCA-620 - Locks appear on biomarkers listed under a protocol incorrectly
(implementation)1.0.1 — Protocol IDsThis release addresses just one tiny little issue:CA-659 - Add protocol ID to protocol viewYou can find the issue tracker athttps://oodt.jpl.nasa.gov/jira/browse/CA1.0.0 — Prime TimeThis release addresses a number of issues
that make this component (and some of its
selected counterparts) “prime time” for
the operational NCI portal.This release addresses the following issues:CA-528 Automatic periodic ingest of RDFYou can find the issue tracker athttps://oodt.jpl.nasa.gov/jira/browse/CA0.0.3 — Filler TextThis release addresses the following issues:CA-586 - Show alternative text (if abstract text is empty) on protocol list
pageCA-604 - Add PI to Protocol ListYou can find the issue tracker athttps://oodt.jpl.nasa.gov/jira/browse/CA0.0.2 — To Be Named At Release TimeThis release addresses the following issues:https://oodt.jpl.nasa.gov/jira/browse/CA-551- Add lock icon to biomarkers
and science data that are “secure” to protocol pageshttps://oodt.jpl.nasa.gov/jira/browse/CA-523- Create search indexes; in
particular, searches are enabled for abbreviated protocol name, biomarker
names, PI names, collaborative group text, dataset names (courtesy of
updates toeke.ecas), and involved investigator sites.0.0.1 — HTML FormattingThe following issue is the sole issue addressed in this release:http://oodt.jpl.nasa.gov/jira/browse/CA-472- Protocols and other items seem
to still have encoded ASCII characters in the titlesRelease 0.0.0Beta release. This release is destined to become theFCS.