Package: csb
CSB is a python library and application framework, which can be used
to solve problems in the field of structural bioinformatics. If
you are a bioinformatician, software engineer or a researcher working
in this field, chances are you may find something useful here. Our
package consists of a few major components:Core class library - object-oriented, granular, with an emphasis
on design and clean interfaces.Application framework - console applications (“protocols”),
which consume objects from the core library in order to build
something executable (and hopefully useful).Test framework - ensures that the libraryactuallyworks.InstallationCSB is being developed on Linux with Python 2.7 and 3.6. However, compatibility
is a design goal and the package works on any platform, on any modern Python
interpreter since version 2.6 (that includes python 3 support out of
the box). If you find any issues on a platform/interpreter different from
our development environment, please let us know.CSB and all of its dependencies can be installed with pip:$ pip install csbSeehttp://csb-toolbox.github.io/Installationfor more details.Running CSB ApplicationsCSB is bundled with a number of executable console csb.apps. Each app
provides a standard command line interface. To run any app, try:$ csb-app --helpwherecsb-appis the name of the application, such ascsb-hhfrag.
For more details on our app framework, including guidelines for writing new
applications, please refer to the API documentation, package “csb.apps”.DocumentationThe project’s web site atGitHubcontains
online documentation and samples. Visit us at:http://csb-toolbox.github.ioDetailed API documentation can be found in the “docs/api” directory in the
distribution package (docs/api/index.html). This documentaiton is also hosted
on our web site:https://csb-toolbox.github.io/api-docs/Many packages contain introductory module level documentation and samples/tutorials.
These are also available in the HTML docs, but a quick way to access them is by using
the built-in python help system. For example, for a general introduction
see the module documentation of the root package:$ python -c "import csb; help(csb)"If you are interested in a specific package, such as cs.bio.sequence,
try:$ python -c "import csb.bio.sequence; help(csb.bio.sequence)"ContactCSB is developed by Michael Habeck’s Computational Structural Biologyresearch group.For complete source code, contributions, support or bug reports please visit
us on GitHub:http://github.com/csb-toolbox/LicenseCSB is open source and distributed under OSI-approved MIT license.Copyright (c) 2012 Michael Habeck

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