SantiagoSanchezF/mgnify_study_descriptions huggingface dataset:
Polyethylene film was incubated in situ marine condition

The present study determines the microbes involved in biofilm formation on polyethylene plastic which was pre-incubated for 6 months in marine conditions and to know the plastic degrading microbial communities, their function, and their role in quorum sensing.

Biome: root:Engineered:Lab enrichment:Defined media
Shotgun metagenomic approch to identify the bacterial, archaeaa,virus, fungi and eukaryotes in Northern Indian Ocean

Shotgun metagenomic approch to identify the bacterial, archaeal,virus, fungi and eukaryotes in Northern Indian Ocean. The surface and chlorophyll max depth water samples were collected during the monsoon in the Arabian Sea. The water samples were filtered in 0.2 micron filter sterivex and the DNA was extracted using qiagen blood and tissue dna extraction kit. The metagenome sequence were carried out in Illumina HiSeq platform.

Biome: root:Environmental:Aquatic:Marine:Oceanic
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365135 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365135, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
metagenomics of Laguna Verde micribialites

metagenomics of Laguna Verde micribialites

Biome: root:Environmental:Aquatic:Non-marine Saline and Alkaline:Saline
Ocean Sampling Day (OSD) 2014: AUTHORITY-RAW amplicon and metagenome sequencing study from the June solstice in the year 2014

Sequencing of amplicon and metagenome samples from the main OSD event, representing joint effort of marine sampling stations around the world. The OSD campaign aims to analyze marine microbial community compositions and embedded functional traits on a single day, the solstice on 2014-06-21.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365148 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365148, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365146 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365146, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365145 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365145, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365144 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365144, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365143 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365143, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365142 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365142, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365141 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365141, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365140 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365140, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365139 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365139, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365138 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365138, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365137 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365137, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365136 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365136, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365134 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365134, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 metagenome

Identifying viral communities during a global deep-ocean expedition

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA365133 data set (Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA365133, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Deep ocean microbial communities from the Global Malaspina Expedition - Deep seawater metaT blank metatranscriptome

Metatranscriptomic analysis of samples from a global deep-ocean expediton

Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA405604 data set (Deep ocean microbial communities from the Global Malaspina Expedition - Deep seawater metaT blank metatranscriptome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA405604, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0103 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0103 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330076.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0104 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0104 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330127.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0203 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0203 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329987.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0204 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0204 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330139.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0145 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0145 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330017.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0261 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of PRJNA330153 data set (Marine microbial communities from the Deep Atlantic Ocean - MP0261 metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA330153, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0144 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0144 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330135.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0262 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0262 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330005.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0326 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0326 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330089.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0327 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0327 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330161.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0371 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0371 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330083.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0372 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0372 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330007.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0440 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0440 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330154.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0441 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0441 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330097.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0626 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0626 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329990.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0627 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0627 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330150.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0759 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0759 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330079.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0740 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0740 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330094.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0758 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0758 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330019.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0555 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0555 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330095.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0739 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0739 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330002.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP0556 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP0556 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330027.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP0901 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP0901 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330006.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP0900 metagenome


Biome: N/A