SantiagoSanchezF/mgnify_study_descriptions huggingface dataset:
Bird Egg Shells from Spain

Study of bird egg shells from Spain

Biome: root:Host-associated:Birds
Longitudinal analysis of microbial interaction between humans and the indoor environment

The Home Microbiome Project was a seed funding initiative to generate exploratory data on the dynamic microbial relationships between people and their homes. The proposal aimed to tackle two core hypotheses: 1-The dominant microbiota associated with human skin is rapidly transferred to surfaces in a home, masking microbiota signatures left from previous interactions with the surface, 2-The composition and relative abundance of members of the dominant microbial community associated with human skin are maintained following transfer to a surface. To test these hypotheses the project aimed to generate 16S rRNA data from hand, foot and gut samples of 18 individuals in seven representative groups. In addition, we proposed to collect surface samples from two internal door knobs, a kitchen counter, the bedroom and bathroom floors and a light switch from each surveyed home, every-other day for two weeks prior to moving in and four weeks following the move into a new home (Table 1). The Home Microbiome Study collected a total of 1,609 microbial samples from seven houses, 18 people, three dogs, and one cat. The people comprised 3 children under 10 years old, and 15 adults over 20 years old. The children comprised 2 males and 1 female in separate houses. The adults comprised 7 females and 8 males. Metadata regarding basic demographics of the individuals and temp, humidity and dew point for each room being analyzed.

Biome: root:Mixed
EMG produced TPA metagenomics assembly of the Thermophilic AOM enrichment (sediment metagenome) data set.

The sediment metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA286178.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Sediment.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Baltic marine sediment metagenome (marine sediment metagenome) data set.

The marine sediment metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA308531.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Sediment.

Biome: root:Environmental:Aquatic:Marine:Sediment
EMG produced TPA metagenomics assembly of the Chandeleur Islands 2015 Metagenome (sediment metagenome) data set.

The sediment metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA390775.  This project includes samples from the following biomes: Environmental, Aquatic, Estuary, Sediment.

Biome: root:Environmental:Aquatic:Estuary:Sediment
EMG produced TPA metagenomics assembly of the Anammox enrichment reactor metagenome () data set.

The  Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA383778.  This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.

Biome: root:Engineered:Wastewater:Activated Sludge
EMG produced TPA metagenomics assembly of the Biogas fermentation microbial communities from Germany - Plant 4 DNA2 metagenome (biogas fermenter metagenome) data set.

The biogas fermenter metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA311383.  This project includes samples from the following biomes: Engineered, Biogas plant, Wet fermentation.

Biome: root:Engineered:Biogas plant:Wet fermentation
EMG produced TPA metagenomics assembly of the Biogas fermentation microbial communities from Germany - Plant 2 DNA2 metagenome (biogas fermenter metagenome) data set.

The biogas fermenter metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA311379.  This project includes samples from the following biomes: Engineered, Biogas plant.

Biome: root:Engineered:Biogas plant
EMG produced TPA metagenomics assembly of the Initial activated sewage sludge GCZ12 Metagenome (activated sludge metagenome) data set.

The activated sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA268585.  This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.

Biome: root:Engineered:Wastewater:Activated Sludge
EMG produced TPA metagenomics assembly of the Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 14_58_20_212_A1 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA406035.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340519.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the Stanley AS Metagenome (activated sludge metagenome) data set.

The activated sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA273520.  This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.

Biome: root:Engineered:Wastewater:Activated Sludge
EMG produced TPA metagenomics assembly of the Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 60B metagenome (compost metagenome) data set.

The compost metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA366478.  This project includes samples from the following biomes: Engineered, Solid waste, Composting.

Biome: root:Engineered:Solid waste:Composting
EMG produced TPA metagenomics assembly of the Evaluation of Enriched Background Microflora of Raw Milk Cheese Spiked with E. coli O157:H7 and E. coli O103 using Next-Generation Sequencing Technology (E.coli O157 and E.coli O121 spiked in cheddar cheese) data set.

The E.coli O157 and E.coli O121 spiked in cheddar cheese Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA430402.  This project includes samples from the following biomes: Engineered, Food production, Dairy products.

Biome: root:Engineered:Food production:Dairy products
EMG produced TPA metagenomics assembly of the Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365247.  This project includes samples from the following biomes: Environmental, Aquatic, Estuary.

Biome: root:Environmental:Aquatic:Estuary
EMG produced TPA metagenomics assembly of the Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA367282.  This project includes samples from the following biomes: Environmental, Aquatic, Estuary.

Biome: root:Environmental:Aquatic:Estuary
EMG produced TPA metagenomics assembly of the Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA367275.  This project includes samples from the following biomes: Environmental, Aquatic, Estuary.

Biome: root:Environmental:Aquatic:Estuary
EMG produced TPA metagenomics assembly of the Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365283.  This project includes samples from the following biomes: Environmental, Aquatic, Estuary.

Biome: root:Environmental:Aquatic:Estuary
EMG produced TPA metagenomics assembly of the Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365282.  This project includes samples from the following biomes: Environmental, Aquatic, Estuary.

Biome: root:Environmental:Aquatic:Estuary
EMG produced TPA metagenomics assembly of the Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid metagenome (marine sediment metagenome) data set.

The marine sediment metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA336774.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal, Sediment.

Biome: root:Environmental:Aquatic:Marine:Coastal:Sediment
EMG produced TPA metagenomics assembly of the Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330319.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Oceanic oxygen minimum zone microbial communities that regulate carbon cycling - Sample ETNP201406SV203 (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA323948.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Oceanic.

Biome: root:Environmental:Aquatic:Marine:Oceanic
EMG produced TPA metagenomics assembly of the Pelagic Microbial community sample from North Sea - COGITO 998_met_04 Metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA266676.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365936.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_0mM metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441889.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_4mM metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441895.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_16mM metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441892.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_4mM metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441890.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365935.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-4-D metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365934.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365236.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365232.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365233.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Metagenome of the microbiota of Chestnut honey from a  bio-diversified environment (Metagenome of the microbiota of Chestnut honey from a bio-diversified environment) data set.

The Metagenome of the microbiota of Chestnut honey from a bio-diversified environment Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA358537.  This project includes samples from the following biomes: Engineered, Food production.

Biome: root:Engineered:Food production
EMG produced TPA metagenomics assembly of the Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG metagenome (activated sludge metagenome) data set.

The activated sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340769.  This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.

Biome: root:Engineered:Wastewater:Activated Sludge
EMG produced TPA metagenomics assembly of the Agave microbial communities from Guanajuato, Mexico -  At.P.e (plant metagenome) data set.

The plant metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340603.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Final activated sewage sludge GCZ13 Metagenome (activated sludge metagenome) data set.

The activated sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA268638.  This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.

Biome: root:Engineered:Wastewater:Activated Sludge
EMG produced TPA metagenomics assembly of the Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A C13 SIP DNA metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340514.  This project includes samples from the following biomes: Engineered, Biogas plant.

Biome: root:Engineered:Biogas plant
EMG produced TPA metagenomics assembly of the compost enrichment single cell ciliate 20uM1 metagenome N11 metagenome (compost metagenome) data set.

The compost metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA366625.  This project includes samples from the following biomes: Engineered, Solid waste, Composting, Bioreactor.

Biome: root:Engineered:Solid waste:Composting:Bioreactor
EMG produced TPA metagenomics assembly of the Estuarine microbial communities from the Columbia River estuary - metaG 1556B-3 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365251.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Intertidal zone, Estuary.

Biome: root:Environmental:Aquatic:Marine:Intertidal zone:Estuary
EMG produced TPA metagenomics assembly of the Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA367288.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Intertidal zone, Estuary.

Biome: root:Environmental:Aquatic:Marine:Intertidal zone:Estuary
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #1 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441402.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP1 #2 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441400.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWP TP1 #2 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441397.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - fosmids plate 3 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330365.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the A plaque on both your houses: Exploring the history of urbanisation and infectious diseases through the study of archaeological dental tartar.

The A plaque on both your houses: Exploring the history of urbanisation and infectious diseases through the study of archaeological dental tartar Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJEB12831.  This project includes samples from the following biomes: Host-associated, Human, Digestive system, Oral.

Biome: root:Host-associated:Human:Digestive system:Oral
EMG produced TPA metagenomics assembly of the compost enrichment single cell ciliate 20uM1 metagenome O22 metagenome (compost metagenome) data set.

The compost metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA366627.  This project includes samples from the following biomes: Engineered, Solid waste, Composting.

Biome: root:Engineered:Solid waste:Composting
Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.

We analyzed microbes in the sediments of a boreal nitrate-rich Lake Paajarvi using shotgun metagenomics.

Biome: root:Environmental:Aquatic:Freshwater:Sediment
EMG produced TPA metagenomics assembly of the Metagenomic data simulated to represent a complex microbial community (SimulatedMG) data set.

The SimulatedMG Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJEB27585.  This project includes samples from the following biomes: Host-associated, Human, Digestive system.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the Metagenomic analysis of the Binga Hot Springs in Zimbabwe for Microbial Diversity and Hydrolytic Enzymes (Binga Hot Springs) data set.

The Binga Hot Springs Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJEB7848.  This project includes samples from the following biomes: Environmental, Aquatic, Thermal springs.

Biome: root:Environmental:Aquatic:Thermal springs
EMG produced TPA metagenomics assembly of the PHOTOHETEROPHY IN A MESOSCALE ANTICYCLONIC EDDY IN THE EASTERN MEDITERRANEAN SEA (Mesoscale_eddy) data set.

The Mesoscale_eddy Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJEB6559.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Oceanic, Photic zone.

Biome: root:Environmental:Aquatic:Marine:Oceanic:Photic zone