SantiagoSanchezF/mgnify_study_descriptions huggingface dataset:
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - Knorr_S7_td_250_ad_252m_LV_B metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365636.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Oceanic.

Biome: root:Environmental:Aquatic:Marine:Oceanic
EMG produced TPA metagenomics assembly of the Pelagic Microbial community sample from North Sea - COGITO 998_met_09 Metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA266687.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340511.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG metagenome (activated sludge metagenome) data set.

The activated sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340748.  This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.

Biome: root:Engineered:Wastewater:Activated Sludge
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_16mM metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441897.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_32mM metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441898.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_8mM metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441896.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_8mM metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441891.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365937.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365933.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365932.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Bioreactor
EMG produced TPA metagenomics assembly of the Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37A metagenome (compost metagenome) data set.

The compost metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA366677.  This project includes samples from the following biomes: Engineered, Solid waste, Composting.

Biome: root:Engineered:Solid waste:Composting
EMG produced TPA metagenomics assembly of the Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Washington, USA - P5_4mM MetaG metagenome (mixed culture metagenome) data set.

The mixed culture metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA406750.  This project includes samples from the following biomes: Environmental, Aquatic, Lentic, Brackish.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_189 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365238.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_91 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365237.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365235.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365234.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365231.  This project includes samples from the following biomes: Host-associated, Plants.

Biome: root:Host-associated:Plants
EMG produced TPA metagenomics assembly of the Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaG metagenome (activated sludge metagenome) data set.

The activated sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340495.  This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.

Biome: root:Engineered:Wastewater:Activated Sludge
EMG produced TPA metagenomics assembly of the Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG metagenome (activated sludge metagenome) data set.

The activated sludge metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA340787.  This project includes samples from the following biomes: Engineered, Wastewater, Activated Sludge.

Biome: root:Engineered:Wastewater:Activated Sludge
EMG produced TPA metagenomics assembly of the compost enrichment single cell ciliate 20uM2 metagenome O9 metagenome (compost metagenome) data set.

The compost metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA366631.  This project includes samples from the following biomes: Engineered, Solid waste, Composting.

Biome: root:Engineered:Solid waste:Composting
EMG produced TPA metagenomics assembly of the compost enrichment single cell ciliate 20uM2 metagenome J15 metagenome (compost metagenome) data set.

The compost metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA366629.  This project includes samples from the following biomes: Engineered, Solid waste, Composting.

Biome: root:Engineered:Solid waste:Composting
EMG produced TPA metagenomics assembly of the compost enrichment single cell ciliate 20uM2 metagenome J5 metagenome (compost metagenome) data set.

The compost metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA366628.  This project includes samples from the following biomes: Engineered, Solid waste, Composting.

Biome: root:Engineered:Solid waste:Composting
EMG produced TPA metagenomics assembly of the Artificial metagenome assembled from nine heterogeneous microorganisms (synthetic metagenome) data set.

The synthetic metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA218588.  This project includes samples from the following biomes: Engineered, Lab Synthesis, Genetic cross.

Biome: root:Engineered:Lab Synthesis:Genetic cross
EMG produced TPA metagenomics assembly of the Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 2_5_20_6_A2 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA405533.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Biogas plant:Wet fermentation
EMG produced TPA metagenomics assembly of the Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 1_4_20_6_A1 metaG metagenome (bioreactor metagenome) data set.

The bioreactor metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA405532.  This project includes samples from the following biomes: Engineered, Bioreactor.

Biome: root:Engineered:Biogas plant:Wet fermentation
EMG produced TPA metagenomics assembly of the Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365006.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Estuarine microbial communities from the Columbia River estuary - metaG S.751 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA365291.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Intertidal zone, Estuary.

Biome: root:Environmental:Aquatic:Marine:Intertidal zone:Estuary
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #2 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441403.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Coastal
EMG produced TPA metagenomics assembly of the Severe gut microbiota dysbiosis is associated with poor growth in patients with short bowel syndrome (human gut metagenome) data set.

The human gut metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA311208.  This project includes samples from the following biomes: Host-associated, Human, Digestive system, Large intestine, Fecal.

Biome: root:Host-associated:Human:Digestive system:Large intestine:Fecal
EMG produced TPA metagenomics assembly of the Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 85_MetaG metagenome (sediment metagenome) data set.

The sediment metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA442911.  This project includes samples from the following biomes: Environmental, Aquatic, Thermal springs, Sediment.

Biome: root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline
EMG produced TPA metagenomics assembly of the Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 70_MetaG metagenome (sediment metagenome) data set.

The sediment metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA442910.  This project includes samples from the following biomes: Environmental, Aquatic, Thermal springs, Sediment.

Biome: root:Environmental:Aquatic:Thermal springs:Near-boiling (>90C):Alkaline
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #3 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441404.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP0 #1 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441398.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWA TP1 #2 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441394.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - Fosmid plate 11 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329910.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - fosmids plate 1 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330363.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Lentic:Brackish
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP1 #3 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441401.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Coastal seawater microbial communities from Marineland, Florida, United States - SWA TP2 #1 metagenome (seawater metagenome) data set.

The seawater metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA441396.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Synechococcus and Synechococcus-associated heterotrophic bacteria genome sequencing (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA445564.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm metagenome (sediment metagenome) data set.

The sediment metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA406718.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Sediment.

Biome: root:Environmental:Aquatic:Marine:Oil-contaminated sediment
EMG produced TPA metagenomics assembly of the Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA375608.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Coastal.

Biome: root:Environmental:Aquatic:Marine:Brackish
EMG produced TPA metagenomics assembly of the sediment metagenome Metagenome (sediment metagenome) data set.

The sediment metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA341273.  This project includes samples from the following biomes: Environmental, Aquatic, Marine,Oceanic, Sediment.

Biome: root:Environmental:Aquatic:Marine:Oceanic:Sediment
EMG produced TPA metagenomics assembly of the xiaobaijiao Raw sequence reads (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA298307.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Gulf Coast Oil Spill Metagenomic Project (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA53921.  This project includes samples from the following biomes: Environmental, Aquatic, Marine, Oceanic, Oil-contaminated.

Biome: root:Environmental:Aquatic:Marine:Oceanic:Oil-contaminated
EMG produced TPA metagenomics assembly of the Metagenomic profiles of samples from aquaculture systems (Metagenomic analysis of antibiotic resistance genes in conventional and recirculating aquaculture systems) data set.

The Metagenomic analysis of antibiotic resistance genes in conventional and recirculating aquaculture systems Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJEB22134.  This project includes samples from the following biomes: Environmental, Aquatic, Aquaculture.

Biome: root:Environmental:Aquatic:Aquaculture
EMG produced TPA metagenomics assembly of the Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA375604.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - Fosmid plate 10 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329909.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - Fosmid plate 9 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329906.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - fosmids plate 6 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330368.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads (human gut metagenome) data set.

The human gut metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA324129.  This project includes samples from the following biomes: Host-associated, Human, Digestive system, Large intestine, Fecal.

Biome: root:Host-associated:Human:Digestive system:Large intestine:Fecal