SantiagoSanchezF/mgnify_study_descriptions huggingface dataset:
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP0900 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330081.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP0959 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP0959 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330093.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP0960 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP0960 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330128.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP1140 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP1140 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329993.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP1141 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP1141 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329989.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP1091 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP1091 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330091.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP1092 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP1092 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330020.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from South of Eden, South Pacific Ocean - MP1434 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from South of Eden, South Pacific Ocean - MP1434 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329988.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP1201 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP1201 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330138.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP1241 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP1241 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330140.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP1374 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP1374 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330113.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Indian Ocean - MP1202 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Indian Ocean - MP1202 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330001.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1482 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1482 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330008.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1483 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1483 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329986.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1493 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1493 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330073.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1649 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1649 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330018.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1648 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1648 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330080.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1896 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1896 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330119.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1494 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1494 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330145.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP2052 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP2052 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330106.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1788 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1788 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330126.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP1787 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP1787 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330136.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP2016 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP2016 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330009.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP2053 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP2053 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330152.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP2158 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP2158 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330112.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP2159 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP2159 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330085.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP2252 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP2252 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330131.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from East of Antigua and Barbuda, Atlantic Ocean - MP2497 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from East of Antigua and Barbuda, Atlantic Ocean - MP2497 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330160.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP2633 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP2633 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330088.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Pacific Ocean - MP2253 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Pacific Ocean - MP2253 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329991.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP2914 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP2914 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330129.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP2969 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP2969 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330149.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP2913 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP2913 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330096.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP2634 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP2634 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA329999.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Marine microbial communities from the Deep Atlantic Ocean - MP2968 metagenome


Biome: N/A
EMG produced TPA metagenomics assembly of the Marine microbial communities from the Deep Atlantic Ocean - MP2968 metagenome (marine metagenome) data set.

The marine metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA330077.  This project includes samples from the following biomes: Environmental, Aquatic, Marine.

Biome: root:Environmental:Aquatic:Marine
Rhizosphere soil Cuminum cyminum Raw sequence reads

Microbial diversity analysis of rhizosphere soil samples of healthy and infected Cumin (Cuminum cyminum L.) varieties from Gujarat, India

Biome: root:Host-associated:Plants:Rhizosphere
Rhizosphere soil Barleria prionitis Raw sequence reads

Host plant rhizo-microbiome interactions: seasonal variation and microbial community structure analysis associated with Barleria prionitis

Biome: root:Host-associated:Plants:Rhizosphere
AquaDiva: Metagenomics assemblies of 32 groundwater samples

Metagenomics assemblies of 32 groundwater samples from study: PRJEB36505. These data is part of the Collaborative Research Centre AquaDiva (www.aquadiva.uni-jena.de). Assemblies performed using metaSPAdes v3.13.0.

Biome: root:Environmental:Aquatic:Freshwater:Groundwater
Dec 08 reference metagenome

Checking reference metagenome

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of the Shotgun Sequencing of Tara Oceans DNA samples corresponding to size fractions for  prokaryotes. (APY) data set

The APY Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB1787. This project includes samples from the following biomes : Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of PRJNA693457 data set (Multi-omics of the nitrate-reducing iron(II)-oxidizing culture BP).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA693457, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Freshwater:Pond:Sediment.

Biome: root:Environmental:Aquatic:Freshwater:Pond:Sediment
EMG produced TPA metagenomics assembly of PRJEB4419 data set (Shotgun Sequencing of Tara Oceans DNA samples corresponding to size fractions for small DNA viruses.).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB4419, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine:Oceanic,root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of PRJNA682552 data set (Multi-omics of the nitrate-reducing iron(II)-oxidizing culture KS).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA682552, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Freshwater:Sediment.

Biome: root:Environmental:Aquatic:Freshwater:Sediment
Ea16/NOD microbiota

Ea16/NOD microbiota

Biome: root:Host-associated:Mammals:Digestive system:Foregut
EMG produced TPA metagenomics assembly of PRJNA247822 data set (Ecological Genomics of a Seasonally Anoxic Fjord; Saanich Inlet).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA247822, and was assembled with SPAdes v3.14.1, metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine:Intertidal zone:Estuary.

Biome: root:Environmental:Aquatic:Marine:Intertidal zone:Estuary
EMG produced TPA metagenomics assembly of PRJEB9742 data set (Shotgun Sequencing of Tara Oceans Polar Circle DNA samples corresponding to size fractions for  small DNA viruses.).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB9742, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.

Biome: root:Environmental:Aquatic:Marine
EMG produced TPA metagenomics assembly of PRJNA649049 data set (Comparisons of microbial diversity over time in two different pH conditions in a geoduck hatchery.).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA649049, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine:Marginal Sea.

Biome: root:Environmental:Aquatic:Marine:Marginal Sea
Comparisons of microbial diversity over time in two different pH conditions in a geoduck hatchery.

For years, hatcheries in Washington (USA) and elsewhere have experienced unexplained mass mortality events in which entire cohorts of larvae do not survive through setting (transition from mobile larval to sessile juvenile phase). Investigations into known diseases, genetics, and water quality, among other factors, yield no direct correlations to these mortality events. Therefore, it has been proposed that more subtle shifts in the microbiome and/or water quality may be causing larval mortality. A full characterization of the resident microbial community (microbiome) in a hatchery could provide insight into the baseline microbiome and deviations from the baseline that may contribute to mortality events.

Biome: root:Environmental:Aquatic:Marine:Marginal Sea
Microbiota of field-caught Anopheles atroparvus

The microbiome profile of a local population of Anopheles atroparvus from the Ebro Delta, a former malaria transmission area of Spain, is characterized using high-throughput sequencing of the bacterial 16S ribosomal gene V3-V4 regions.

Biome: root:Host-associated:Insecta
EMG produced TPA metagenomics assembly of PRJNA237344 data set (Amazon Continuum Metagenomes).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA237344, and was assembled with SPAdes v3.11.1, SPAdes v3.12.0. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine:Oceanic.

Biome: root:Environmental:Aquatic:Marine:Oceanic