Mitochondrial Apoptosis and FAK Signaling Disruption by a Novel Histone Deacetylase Inhibitor, HTPB, in Antitumor and Antimetastatic Mouse Models

Compound targeting histone deacetylase (HDAC) represents a new era in molecular cancer therapeutics. However, effective HDAC inhibitors for the treatment of solid tumors remain to be developed.Here, we propose a novel HDAC inhibitor, N-Hydroxy-4-(4-phenylbutyryl-amino) benzamide (HTPB), as a potential chemotherapeutic drug for solid tumors. The HDAC inhibition of HTPB was confirmed using HDAC activity assay. The antiproliferative and anti-migratory mechanisms of HTPB were investigated by cell proliferation, flow cytometry, DNA ladder, caspase activity, Rho activity, F-actin polymerization, and gelatin-zymography for matrix metalloproteinases (MMPs). Mice with tumor xenograft and experimental metastasis model were used to evaluate effects on tumor growth and metastasis. Our results indicated that HTPB was a pan-HDAC inhibitor in suppressing cell viability specifically of lung cancer cells but not of the normal lung cells. Upon HTPB treatment, cell cycle arrest was induced and subsequently led to mitochondria-mediated apoptosis. HTPB disrupted F-actin dynamics via downregulating RhoA activity. Moreover, HTPB inhibited activity of MMP2 and MMP9, reduced integrin-β1/focal adhesion complex formation and decreased pericellular poly-fibronectin assemblies. Finally, intraperitoneal injection or oral administration of HTPB efficiently inhibited A549 xenograft tumor growth in vivo without side effects. HTPB delayed lung metastasis of 4T1 mouse breast cancer cells. Acetylation of histone and non-histone proteins, induction of apoptotic-related proteins and de-phosphorylation of focal adhesion kinase were confirmed in treated mice.These results suggested that intrinsic apoptotic pathway may involve in anti-tumor growth effects of HTPB in lung cancer cells. HTPB significantly suppresses tumor metastasis partly through inhibition of integrin-β1/FAK/MMP/RhoA/F-actin pathways. We have provided convincing preclinical evidence that HTPB is a potent HDAC targeted inhibitor and is thus a promising candidate for lung cancer chemotherapy.

section_content: The development of molecular-targeted therapies represents a new era in cancer treatment [1]. Molecular-targeted drugs specifically against cancer cells without affecting normal cells are being developed [2] [3] [4]. Many of the molecular-targeted drugs are inhibitors of proteins involved in signaling transduction, such as growth factors, growth factor receptors or kinases [2, 5]. 

Recent findings of overexpression and/or increased activity of histone deacetylases (HDACs) in cancer cells and low basal level in normal cells make HDACs potential therapeutic targets for cancer treatment [6] [7] [8]. HDACs catalyze the removal of acetyl-groups from lysine residues in the N-terminal tails of histones, leading to chromatin condensation and transcriptional repression. In addition to histones, HDACs have many other substrates involved in the regulation of cellular function, such as p53, p21, HSP90, tubulin, and of various transcription factors [9]. It has been demonstrated that inhibition of HDACs reverses aberrant epigenetic status and exhibits potent antitumor activities by inducing cell cycle arrest, differentiation and/or apoptosis in diverse cancer cells [10, 11]. 

To date, more than 15 HDAC inhibitors have been tested in clinical trials in several hematological malignancies and solid tumors [12]. These HDAC inhibitors include the short chain fatty acids such as phenylbutyrate, butyrate, and valproic acid; the benzamides such as MS-275 and CI-994 [13, 14] ; the hydroxamic acids such as Trichostatin A (TSA), LAQ-824, and pyroxamide; the cyclic peptides such as FK-228. Specifically, the U. S. Food and Drug Administration has approved two HDAC inhibitors, vorinostat (SAHA, suberoylanilide hydroxamic acid, ZolinzaH) and romidepsin (FK228, depsipeptide, IstodaxH), for the treatment of cutaneous manifestations of cutaneous T-cell lymphoma [15]. However, some adverse events occurred in patients treated with vorinostat or other HDAC inhibitors, which may have resulted from the high dose of inhibitors used during the treatment for solid tumors in clinical trials [8, 16]. 

The structures of HDAC inhibitors such as TSA and SAHA could be divided into three motifs: a zinc-chelating motif (hydroxamate), a linker consisting an aliphatic chain, and a polar cap group. We have previously developed an HDAC inhibitor, N-Hydroxy-4-(4-phenylbutyryl-amino)benzamide (HTPB), which has been optimized for HDAC inhibition by structure-based analyses [17]. In the present study, the antitumor and antimetastatic activities of HTPB and the underlying mechanisms were studied in lung cancer cell and animal models. The goal was to develop an HDAC inhibitor with low IC 50 to treat solid tumor without significant side effects in preclinical models.
section_name: Introduction

section_name: Results

section_content: The structure of HTPB and SAHA are shown in Fig. 1A (upper panel). The cytotoxicity of HTPB was assessed in the IMR90 normal lung cell line and two human lung cancer cell lines including A549 and H1299. SAHA was included as a positive control HDAC inhibitor. HTPB induced significant cytotoxicity in A549 and H1299 lung cancer cell lines with extrapolated IC 50 value of 1. 59 mM for A549 and 2. 19 mM for H1299 (1. 2-2. 1 times more potency than SAHA; IC 50 : A549 = 1. 89 mM, H1299 = 4. 59 mM), without showing apparent cytotoxicity towards IMR90 normal lung cell line (Fig. 1A, lower panel). 

To examine the target specificity of HTPB, in vitro HDAC inhibition assay was performed with class I, II, and IV HDACs. As shown in Fig. 1B, the deacetylase activities of different HDAC isotypes including class I (HDAC1 and HDAC8), class II (HDAC4 and HDAC6), and class IV (HDAC11) were significantly inhibited by HTPB. The biomarkers of HDAC inhibition are acetylation of histone and non-histone proteins [11, 18]. Exposure to HTPB induced acetylation of histone H3, histone H4, p53 and tubulin in a time-and dose-dependent manner (Fig. 1C & 1D), while it did not affect the HDAC1 and HDAC6 protein levels (Fig. 1E ). Notably, HTPB was more potent than SAHA for induction of tubulin acetylation (Fig. 1D ). Despite the p53 status, HTPB induced the expression of p21 Cip1 protein in A549 (p53 wild-type) and H1299 (p53 null) cells (Fig. 1E ), suggesting that activation of p21 Cip1 involved changes in promoter-associated proteins, including HDACs, not via p53-dependent transcriptional activation. These results suggested that HTPB is a pan-HDAC inhibitor and induces acetylation of histone and non-histone proteins.
section_name: HTPB is a pan-HDAC inhibitor and exhibits cancer cellspecific cytotoxicity by promoting acetylation of various proteins

section_content: To investigate the underlying mechanism of cell growth repression by HTPB, the effects of HTPB on cell cycle progression in A549 and H1299 cells were assessed by flow cytometry. Treatment with 5 mM HTPB caused cell accumulation at G2/M phase and apoptosis (sub-G1) in both cells and an additional G1 arrest in H1299 cells at 48 hours treatment (Fig. 2A ), indicating that HTPB exerted a cell cycle deregulation effect. 

To further elucidate the HTPB-induced apoptosis, we performed a DNA ladder analysis and found that ladders appeared in A549 and H1299 cells after HTPB treatments (Fig. 2B ). Moreover, treatment with 5 mM HTPB caused a timedependent increase in pro-apoptotic protein, Bad and Bak, while it decreased the anti-apoptotic protein Bcl-2 and Bcl-XL (Fig. 2C ). HTPB treatment significantly stimulated caspase-3 and caspase-9 (an indicator of the intrinsic mitochondrial pathway) activities after 24 hours treatment whereas the activity of caspase-8 (an indicator of the extrinsic membrane receptor pathway) remained unaffected in both cells lines tested (Fig. 2D ). The cleavage of pro-caspase-9 and -3 was also seen after HTPB treatment (Fig. S1 ). These results suggested that intrinsic apoptotic pathway may play a role in HTPB-induced cytotoxicity in lung cancer cells. 

HTPB at non-cytotoxic doses suppresses migration ability in lung cancer cell lines via inhibiting activity of integrin-b1/FAK/MMP/RhoA/F-actin motility control To investigate whether HTPB inhibited cell migration in A549 and H1299 lung cancer cell lines, trans-well migration assay and wound-healing assay were performed at non-cytotoxic doses. As shown in Fig. 3A and 3B, the percentage and distance of migrated cells were significantly reduced after HTPB treatment. These results suggested that HTPB significantly inhibited lung cancer cell migration at non-cytotoxic doses. To delineate the mechanism of HTPB-induced migration inhibition, enzyme activities of matrix metalloproteinases MMP-2 and MMP-9 were examined by substrate-specific gelatin-zymography assay. The data indicated that MMP-2 and MMP-9 enzyme activities were significantly decreased in A549 and H1299 cells treated with HTPB for 48 hours (Fig. 3C ). In addition, HTPB markedly decreased RhoA activity in lung cancer cells (Fig. 3C ). To determine whether focal adhesion complex played a role in HTPB-inhibited cancer cell migration, we examined the activities of focal adhesion kinase (FAK) and integrin-b1 after HTPB treatment. As shown in Fig. 3D, the levels of integrin-b1 and phospho-FAK were significantly reduced in a dosedependent manner in 48 hours after HTPB treatment. In addition, Factin dynamics as detected by confocal immunofluorescence microscopy illustrated that the polymerization of F-actin was dramatically inhibited after HTPB treatment in H1299 and A549 cells (Fig. 3E ). These results suggested that HTPB decreased migratory activities of lung cancer cells partly through inhibiting the activities of MMPs and RhoA protein and disrupting focal adhesion complex and F-actin cytoskeleton arrangement.
section_name: HTPB induces cell cycle arrest and mitochondrialmediated apoptosis

section_content: To further evaluate the antitumor activity of HTPB, Balb/c nude mice bearing A549 lung tumor xenograft were injected intraperitoneally or orally with 25-100 mg/kg of HTPB, 3 days/week for three weeks. As shown in Fig. 4A and Fig. S2A, intraperitoneal treatment with 25 and 50 mg/kg HTPB significantly inhibited tumor growth by 80% and 94%, compared with DMSO control, while 50 mg/kg SAHA inhibited tumor growth only by 65% (left panel). Oral administration with 50 and 100 mg/kg HTPB significantly inhibited tumor growth by 39% and 79% (right panel) respectively. In addition, significantly less tumor weight was observed in mice treated by HTPB intraperitoneally (Fig. 4B, left panel) or orally (right panel) than in control mice. Note that the antitumor growth effect of HTPB was 2-4 times more potent than SAHA as assessed by tumor weight (Fig. 4B, left panel). Treatment with HTPB did not adversely affect body weight (Fig. 4C and Fig. S2B ) and caused no detectable toxicity as examined by hematological biochemistry examinations (Fig. 4D ).
section_name: HTPB inhibits lung tumor xenograft growth in vivo without significant side effects

section_content: To explore the anti-metastasis activity of HTPB, highly metastatic 4T1-luc breast cancer cells were treated with 1. 92 mM HTPB for 48 hours. Such a treatment did not change cell viability (Fig. 5A and Fig. S3A ) or cell cycle distribution (Fig. S3B ) of 4T1-luc breast cancer cells but it decreased transwell migration capacities to 50% compared to the un-treated control (Fig. S3C ). Interestingly, pericellular poly-fibronectin assemblies were decreased in 4T1-luc cells after HTPB treatment (Fig. 5B ). The treated cells were then injected intravenously via tail vein into Balb/c mice and photographed by IVIS-50 imaging system at day-1, 4, 7, and 13 to observe in vivo cancer cell metastasis after
section_name: HTPB significantly inhibits cancer cell metastasis in vivo

section_content: To confirm that HTPB suppressed tumor growth and tumor metastasis via targeting the HDACs, inducing apoptosis and inhibiting FAK in vivo, mice bearing established A549 tumors were treated with a single dose of HTPB at 50 mg/kg. After treatment, tumors were dissected and cell lysates were subjected to Western blot or immunohistochemistry analysis. Acetylation of histone H3, histone H4 and p53 were profoundly increased after 2 hours treatment in tumor xenograft collected. The protein levels of anti-apoptotic Bcl-XL started to decrease after 2 hours treatment (Fig. 6A ), while the level of cleaved caspase-3 protein was increased in tumor xenograft collected on day 25 (Fig. 6B, upper panel). Activated phosopho-FAK and phosopho-AKT were also decreased in HTPB-treated tumor xenograft (Fig. 6B, middle and lower panels). These results demonstrated that HTPB could induce apoptosis and down-regulate migration regulators, FAK and AKT, in vivo. In addition, increase of HDAC inhibition biomarkers such as acetylation of histone H3, histone H4 and p53 was evident in tumors of treated mice.
section_name: HTPB induces protein acetylation, apoptosis and FAK inhibition in vivo

section_content: Since HDACs are promising targets for cancer therapy, a number of HDAC inhibitors are in clinical trials as single agent and/or in combination with other anticancer drugs [10]. However, none have yet been demonstrated to be effective as treatment for solid tumors. Here, we provide compelling evidence from cell and animal studies that HTPB, a phenylbutyrate-based compound, is a potential HDAC inhibitor for lung cancer treatment. HTPB targeted numerous members within three classes of HDACs in vitro and efficiently stimulated protein acetylation in cell and animal models (Fig. 1 and 6 ). HTPB repressed cell viability and induced apoptosis in lung cancer cell lines (Fig. 1 and 2 ). In addition, HTPB reduced cell migration at non-cytotoxic dose via inhibition of Rho/ F-actin and integrin-b1/FAK/MMP pathways (Fig. 3 ). The xenograft experiments further confirmed that HTPB induced cell apoptosis and thereby inhibited tumor growth in vivo without adversely affecting body weight and hematological parameters (Fig. 4 and 6 ). In addition, HTPB significantly inhibited lung metastasis in vivo through inhibition of pericellular poly-fibronectin assemblies at non-cytotoxic concentrations (Fig. 5 and 6 ). Collectively, these results suggested that HTPB is a promising candidate HDAC inhibitor for lung cancer treatment. 

We provide the first evidence that HTPB significantly inhibited tumor growth by both intraperitoneal and oral administrations in animal model (Fig. 4 ). The anti-tumor growth effect could be optimized if a better solvent was used during oral administration. Upon HTPB treatment, G2/M arrest were induced and subsequently led to mitochondria-mediated apoptosis (Fig. 2 ). The G1 arrest observed in H1299 cells could be due to the induced expression of p21 Cip1 after HTPB treatment (Fig. 1E ). p21 Cip1 is a cyclin-dependent kinase inhibitor and has been shown to mediate G1 cell cycle arrest [19]. Our results (Fig. 2 and 6 ) showed that treatment of HTPB resulted in a time-dependent reduction in the levels of the anti-apoptotic proteins Bcl-2 and Bcl-XL. Concomitantly, the level of pro-apoptotic proteins Bad and Bak was increased. The Bcl-2 family of proteins constitutes a critical mediator in the mitochondrial pathway of apoptosis [20]. Furthermore, the progression of apoptosis involves the activation of a cascade of proteases called caspases. Theoretically, the extrinsic pathway is related to the activation of caspase-8 and the intrinsic pathway is associated with activation of caspase-9. Both pathways converge to a common pathway involving the activation of caspase-3 [20, 21]. As shown in our data, HTPB apparently stimulated caspases-3, caspase-9 and to a lesser extent caspase-8 activities. Importantly, induced caspase-3 and reduced Bcl-XL were confirmed in HTPB-treated tumor xenograft (Fig. 6 ). It is noteworthy that we also found that HTPB caused induction of the acetylated-p53 protein, which are highly expressed and correlated with apoptosis induction [22]. Together, these results suggested that HTPB induced the execution of apoptosis partly through the activation of the intrinsic mitochondrial pathway. Experiments using specific caspase inhibitors to test whether intrinsic apoptosis accounted for HTPB-induced cell death are worthy of further examinations. 

We have also showed for the first time that HTPB significantly delayed lung metastases in animal model (Fig. 5 ). Our cellular data indicated that HTPB inhibited cancer cell migration through inhibiting activity of matrix metalloproteinases, RhoA, integrin-b1 and focal adhesion complex (Fig. 3 ) and disrupting Factin arrangement (Fig. 3 ). Activated integrins control downstream signaling pathway through non-receptor tyrosine kinase FAK [23, 24] which correlates with cancer metastasis [25]. Integrin-b1 has been genomically identified and shown to clinically promote cancer metastasis [26]. In addition, the Rho/ Rac/CDC42 GTPase proteins, which are downstream effectors of FAK, control cell motility through WASP and ARP2/3 complex signaling pathway to regulate the extension and branching of actin filament and cell protrusion [27]. We confirmed that HTPB treatment decreased integrin-b1, p-FAK(Y397) and decreased the activities of RhoA and matrix metalloproteases, MMP-2 and MMP-9. Importantly, reduced p-FAK(Y397) and its downstream effector p-AKT were confirmed in HTPB-treated tumor xenograft (Fig. 6 ). Note that integrin-b1 downstream signaling players RhoA is known to regulate the actin stress fiber-coordinated fibronectin matrix assembly [28], which is associated with cancer colonization and metastasis in the lungs [29]. Our study also confirmed the inhibition of pericellular poly-fibronectin assembly by HTPB treatment (Fig. 5 ). The question remained is whether the anti-motility effect of HTPB is due to HDAC inhibition. Our previous study on another HDAC inhibitor, OSU-HDAC-44 showed that OSU-HDAC-44 decreased the activity of RhoA via induction of srGAP1 and contributed to dysregulation of F-actin dynamics [30]. The srGAP1 gene, which encodes a GTPase activating protein known to regulate axon guidance [31], was confirmed to be in the open chromatin structure and increased in expression level in our previous study [30]. HTPB may inhibit cancer cell motility partly through reactivation of srGAP1 via promoting histone acetylation of srGAP1 promoter and further attenuation of downstream Rho/ FAK/MMP signaling pathway. Note that TSA has been shown to up-regulate RECK via transcriptional activation to inhibit MMP activity in human lung cancer cells [32]. Whether other Rho family of GTPases, such as Rac and Cdc42 and other metastasis-related proteins such as RECK, WASP and ARP2/3 complex are involved in HTPB-induced migration inhibition is worth further investigation. 

In conclusion, our findings show that HTPB is a novel pan-HDAC inhibitor that exhibits antitumor and antimetastatic activities in lung cancer cells but not in normal lung cells in cell and xenograft models, which involves not only histone acetylationdependent activation of gene transcription, but also activation of intrinsic apoptotic pathways and down-regulation of integrin-b1/ FAK/MMP/RhoA/F-actin motility control pathway. Note that HTPB induced stronger cytotoxicity in lung cancer cells and had greater inhibitory effect on tumor growth in lung tumor xenografts than SAHA. In addition, HTPB inhibited the invasion of lung cancer cells at a lower dose than SAHA did [33]. A better efficacy in vivo of HTPB over SAHA may be due to longer retention time of HTPB than SAHA in animal. Pharmacokinetics and pharmacodynamics studies for both SAHA and HTPB are under the investigations. Furthermore, HTPB showed significant inhibition of in vitro HDAC activity compared to MS275 (Fig. S5 ), a class I HDAC inhibitor with preference for HDAC1. In comparison with our previous HDAC inhibitor, OSU-HDAC-44, the synthesis of HTPB is easier (only 2 steps, but 3 steps for HDAC-44) and with higher yield. Methyl groups at a-position of HDAC-44 were removed to form the HTPB in order to minimize the bulkiness and steric hindrance of amide linkage. The IC50 values of HTPB in various lung cancer cells were close to OSU-HDAC-44 [30]. In addition, HTPB significantly inhibited lung metastasis in vivo at non-cytotoxic concentrations. These anti-metastasis data in vitro and in vivo were not shown for OSU-HDAC-44. It is worthy to investigate whether there is selective chromatin change in a fraction of gene loci by genome-wide chromatin immunoprecipitation-on-chip assay. Collectively, our data provide compelling evidence that HTPB is an HDAC inhibitor and could be tested for lung cancer treatment and combination chemotherapy.
section_name: Discussion

section_name: Materials and Methods

section_content: All animals were obtained from the National Laboratory Animal Center (Republic of China, Taiwan) with the approval of Institutional Animal Care and Use Committee (IACUC), National Cheng Kung University (IACUC Approval No. 99131) and were maintained in pathogen free conditions. The study approval by the review board institution and ethics committee was confirmed by National Cheng Kung University.
section_name: Ethics Statement

section_content: Human normal lung cell line IMR90 and human lung cancer cell lines, A549 and H1299, were obtained from the American Type Culture Collection (ATCC, Manassas, VA). Luciferase expressing murine breast cancer cell line, 4T1-Luc, was obtained from Dr. M. L. Kuo (Institute of Toxicology, National Taiwan University, Taipei, Taiwan). All cell lines were cultured in Dulbecco's Modified Eagle's Medium (GIBCO, Grand Island, NY) containing 10% fetal bovine serum (FBS) (BIOCHROM AG, Leonorenstr, Berlin, Germany) and 1% penicillin-streptomycin (GIBCO), and incubated at 37uC in 5% CO 2 atmosphere.
section_name: Cell lines and culture conditions

section_content: Synthesis of N-hydroxy-4-(4-phenylbutanamido)-benzamide 2 (HTPB) was successfully accomplished in two steps as shown in Fig. S6. 4-(4-phenylbutanamido) benzoic acid 1 was prepared by treatment of 4-phenylbutanoic acid with oxalyl chloride followed by 4-amino benzoic acid. Standard peptide coupling reaction between the resulting acid 1 and hydroxyl amine hydrochloride, using PyBop as a coupling reagent and Et 3 N provided the hydroxamte 2 (HTPB) as evidenced by 1 H, 13 CNMR and highresolution mass spectroscopy.
section_name: Preparation of HTPB

section_content: To a stirred solution of 4-phenylbutanoic acid (328 mg, 2 mmol, 1 equiv) in anhydrous CH 2 Cl 2 (5 ml) was added oxalyl chloride (504 mg, 336 ml, 4 mmol, 2 equiv) at 0uC under N 2. The resulting mixture was warmed to ambient temperature. After having been stirred for 4 hours, the reaction mixture was concentrated in vacuo. The crude residue was co-evaporated with anhydrous CH 2 Cl 2 (265 ml) and dried in vacuo. The resulting acid chloride residue was dissolved in anhydrous CH 2 Cl 2 (5 ml) and 4amino benzoic acid (329 mg, 2. 4 mmol, 1. 2 equiv) was added at 0uC followed by Et 3 N (417 ml, 303 mg, 3 mmol, 1. 5 equiv) under N 2. After having been stirred for 10 hours at ambient temperature, the reaction mixture was quenched with water (10 ml) and then extracted with CH 2 Cl 2 (2610 ml). The combined organic layers were dried (MgSO 4 ), filtered and concentrated under reduced pressure. The crude residue was purified by column chromatography (EtOAc/hexanes, 9/1) on silica gel to afford 498 mg of 4-(4-phenylbutanamido)benzoic acid 1 as a white solid:
section_name: 4-(4-phenylbutanamido)benzoic acid (1)

section_content: To a stirred solution of acid 1 (283 mg, 1 mmol, 1 equiv) in DMF (1 mL) was added triethyl amine (121 mg, 167 mL, 1. 2 mmol, 1. 2 equiv) followed by PyBOP (624 mg, 1. 2 mmol, 1. 2 equiv) at 0uC. The Resulting reaction mixture was warmed at ambient temperature. After having been stirred for 4 hours at ambient temperature, the reaction mixture was cooled to 0uC and hydroxylamine hydrochloride (138 mg, 2 mmol, 2 equiv) was added followed by triethyl amine (151 mg, 209 ml, 1. 5 mmol, 1. 5 equiv) and the resulting mixture was stirred at ambient temperature for overnight. The reaction mixture was then quenched with water (5 ml) and extracted with EtOAc (365 ml). The combined organic layers were washed with brine (10 ml), dried (MgSO 4 ), filtered and concentrated under reduced pressure. The crude residue was purified by column chromatography (EtOAc/hexanes, 9/1) on silica gel to afford 259 mg of Nhydroxy-4-(4-phenylbutanamido)benzamide 2 as a white solid: 1
section_name: N-hydroxy-4-(4-phenyl-butyrylamino)-benzamide (2)

section_content: Cells were seeded at 5610 4 cells/well in 12-well plates and treated with various concentrations of HTPB or SAHA for 48 hours, followed by 0. 5 mg/ml of 3-(4. 5-dimethylthiazol-2-ly)-2,5-diphenyl tetrazolium bromide (MTT, Sigma-Aldrich, St. Louis, MO) for 30 minutes at 37uC in a 5% CO 2 humidified incubator to determine their cytotoxic effects. Cell cytotoxicity was expressed as percentage loss of cell viability compared with control (DMSO), and 50% of inhibition concentration (IC 50 ) of death cell lines was calculated.
section_name: Cell cytotoxicity/MTT assay

section_content: Cell cycle distribution was determined by flow cytometry. Cells were treated with 5 mM HTPB for 24 or 48 hours, and then fixed with 70% ethanol for at least 2 hours at 220uC. Fixed cells were stained with a solution containing 20 mg/ml propidium iodide, 200 mg/ml RNase A, and 0. 1% Triton X-100 for 20 minutes in the dark. Cell cycle distribution was performed using FACScan flow cytometry (BD Biosciences, Mountain View, CA) and calculated with ModFIT LT 2. 0 version software (BD Biosciences).
section_name: Cell cycle analysis

section_content: Fixed cells were centrifuged, resuspended in 100 ml of DNA extraction buffer (0. 2 M Na 2 HPO 4, 0. 1 M citrate acid, and 0. 5% triton X-100, pH 7. 8), and then incubated for 1 hour at 37uC. After centrifugation, the supernatant was collected and incubated with 5 ml RNase A (100 mg/ml) for 1 hour at 37uC, and followed by digestion with 5 ml proteinase K (20 mg/ml) for 1 hour at 37uC. After electrophoresis, the gels were stained and imaged.
section_name: Determination of the apoptotic DNA ladder

section_content: Caspase activity was measured with the caspase luminescent assay kit (Promega, Madison, WI) according to the manufacturer's instructions. Cells seeded in a 96-well plates were treated with 5 mM HTPB for 12 or 24 hours, followed by incubation with various synthetic caspase substrates (Ac-DEVD-pNA, Ac-LETD-pNA, and Ac-LEHD-pNA) to measure the activity of caspases-3, -8, and -9, respectively. After incubation for an hour, luminescence was detected using a SpectraMaxH M5 microplate reader (Molecular Devices, Sunnyvale, CA).
section_name: Caspase activity assay

section_content: The cells were lysed on ice. Lysates were centrifuged at 13,000 r. p. m. for 15 min at 4uC, SDS gel loading buffer was added and samples containing equal amounts of protein (50 mg) were separated on a 10% SDS-PAGE then electro-blotted onto a Immobilon-P membrane (Millipore Co., Bedford, MA) in transfer buffer. Immunoblotting was performed for various proteins, using the antibodies with conditions described in the Table S1.
section_name: Western blot analysis

section_content: Immunoprecipitation of different HDAC isotypes from nuclear extract were performed using specific anti-HDAC-1, -4, -6, -8, and -11 antibodies as described in the Table S1. The HDAC activity assay was performed using a HDAC fluorescent activity assay kit (BIOMOL Inc, Plymouth Meeting, PA) according to the manufacturer's instructions. Specific HDAC isotypes were added to the diluted HTPB (1 or 2 mM), and then the substrate was added. Samples were incubated for 10 min at 25uC then the reaction was stopped by adding developer. After incubation for 10 min, luminescence was recorded with a SpectraMaxH M5 microplate reader (Molecular Devices, Sunnyvale, CA).
section_name: HDAC inhibition Assay

section_content: Cells (,2610 5 ) suspended in serum-free DMEM medium were pretreated with DMSO control or HTPB, and placed in the upper chamber of culture-insert. DMEM medium containing 10% FBS was added to the lower chamber as chemoattractants and the cells were incubated at 37uC for 12 hours. The cells attached on the reverse side of the membrane were stained with crystal violet and cells in 5,10 randomly selected fields were counted under inverted microscope (Nikon TS100, Nikko, Japan). Three independent experiments were performed.
section_name: Trans-well migration assay

section_content: Cancer cells were treated with different concentration of HTPB or DMSO for 48 hours. A cell-free gap of 400 mm was created after removing the Culture-Insert (Ibidi, Martinsried, Germany). The cells that had migrated into the wound area were calculated as 400 mm -(5-12 hours area6400 mm)/0 hour area. Three independent experiments were photographed and quantified under a microscope.
section_name: Wound healing assay

section_content: The RhoA activation assay was performed using active Rho pull-down and detection Kit (Pierce, Rockford, IL). A glutathione S-transferase (GST) fusion protein containing the Rho binding domain (RBD) from Rhotekin was used. One mg protein lysates were incubated with 400 mg of purified GST-Rhotekin-RBD immobilized on agarose-glutathione beads for 1 hour at 4uC with constant agitation. The beads were washed three times with 16 Lysis/Wash buffer and bound proteins were eluted and subjected to Western blot analysis using RhoA antibody as described in the Table S1.
section_name: RhoA activation assay

section_content: Conditioned medium were collected from cells treated with DMSO or HTPB for 48 hours, and analyzed by gelatin zymography in 0. 1% gelatin-8% acrylamide gels. After electrophoresis, gels were washed with 2. 5% Triton X-100 to remove SDS and renature the MMP-2 and MMP-9 in the gel. Then the gels were incubated in the developing buffer overnight to induce gelatin lysis by renatured MMP-2 and MMP-9. The gel was then stained with 0. 5% Coomassie blue G for 1 hour. The proteolytic activities were identified as clear bands.
section_name: Gelatin-zymography assay

section_content: To stain for DNA and F-actin, the fixed cells were stained with DAPI and Phalloidin as described in the Table S1, respectively, for 1 hour and then the images were recorded by an OLYMPUS FV1000 confocal microscope (Olympus America Inc., Melville, NY).
section_name: Immunofluorescence staining and confocal microscopic analysis

section_content: Athymic nu/nu mice (Balb/c), 4-5 weeks of age, were obtained from the National Laboratory Animal Center (Republic of China, Taiwan) with the approval of Institutional Animal Care and Use Committee (IACUC), National Cheng Kung University (IACUC Approval No. 99131) and were maintained in pathogen free conditions. Mice were implanted subcutaneously with 5610 6 A549 cells in 0. 1 ml Hanks' balanced salt solution (HBSS) in one flank per mouse. When tumors had attained a mass of,50 mm 3, the mice were treated intraperitoneally or orally with HTPB (25 mg/kg, 50 mg/kg or 100 mg/kg), SAHA (50 mg/kg), DMSO or oral solvent (0. 5% methylcellulose and 0. 1% Tween 80 in ddH 2 0) on days 1, 3, and 5 for three weeks. The tumor size was measured according to the formula: (Length6Width 2 )/2. Prior to sacrifice, the animals were anesthetized and blood samples were collected by intracardiac puncture for the hematological biochemistry tests. Tumor samples and mice organ tissues were resected, fixed and embedded in paraffin for histologic examination. To examine the biological effects of HDAC inhibition in tumors, mice bearing established (about 100 mm 3 ) A549 tumors were treated intraperitoneally with a single dose of HTPB at 50 mg/kg. After treatment for indicated time, tumors were harvested and subjected to Western blot or immunohistochemistry analyses.
section_name: Animal model-in vivo anti-tumor growth assay

section_content: The Balb/c mice were obtained and approved by Institutional Animal Care as described above. Highly metastatic 4T1-luc mouse breast adenocarcinoma cells were pre-treated with 1. 92 mM HTPB or DMSO for 48 hours. Cells were then trypsinized and recovered for 2 hours at 37uC in media containing 20% FBS with HTPB or DMSO. Cells (1610 5 cells/200 ml) were subsequently resuspended in serum-free DMEM medium and intravenously injected via tail vein into Balb/c mice. These mice were then given 3 mg/mice endotoxin-free luciferase substrate (VivoGlo TM, Promega) and photographed using IVIS-50 imaging system (XENOGEN) at day-2, 4, 8 and 13.
section_name: Animal model-in vivo anti-tumor metastasis assay

section_content: Tumor tissues from mice were analyzed using IHC assay to detect the expression levels of cleaved caspase-3, phospho-AKT and phospho-FAK proteins as described in the Table S1. Tumor tissues from mice were subjected to Western blot analysis for the acetylated proteins and apoptotic related proteins.
section_name: Tissue Western Blot and immunohistochemistry (IHC) assay

section_content: Whole blood samples of treated mice were collected by intracardiac puncture and stored at 4uC in tube with or without EDTA anticoagulant. Biochemistry evaluation included glutamate oxaloacetate transaminase (GOT), glutamate pyruvate transaminase (GPT), albumin levels and creatinine levels. Hematology tests included platelet count, red blood cell (RBC), and white blood cell (WBC). All experiments and procedures were done in accordance with the Institutional Care Use Committee guidelines.
section_name: Biochemistry and hematology tests

section_content: The SPSS program (SPSS Inc. Headquarters Chicago, Illinois) was used for all statistical analysis. Statistical analysis was performed using Student's t-test. Data shown were representatives of at least three independent experiments. Data represent mean 6 SEM. P,0. 05 was considered to be statistically significant.
section_name: Statistical analysis

section_name: Supporting Information

section_content: This work was supported in part by grants CMNCKU9906 from the Chi Mei Medical Center, Taiwan (JMS) and NSC100-2325-B-400-012 (PL) and NSC 100-2325-B-006-009 from the National Science Council, Taiwan (YCW). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.