"""Script to remove some of the most common issues in the .tsv transcription file""" import csv import re import os import sys import glob def clean_tsv(input_file : str, output_file: str, revision_file: str) -> None: """Generic function Args: input_file (str): The path to the tsv file to clean output_file (str): The path to the file to save the cleaned rows in. (Typically the same file) revision_file (str): The path to the file to save still inconsistent rows in Returns: _type_: _description_ """ cleaned_rows = [] revision_rows = [] # Helper function to clean the line def clean_line(line): # Remove unwanted characters line = re.sub(r'[<>"]', '', line) # Replace consecutive tabs with a single tab line = re.sub(r'\t+', '\t', line) return line # Open the input file and process each row with open(input_file, 'r', encoding='utf-8') as infile: reader = csv.reader(infile, delimiter='\t') for row in reader: # Clean the row row = [clean_line(item) for item in row] # If the row has exactly 4 items, ensure the first two are numbers if len(row) == 4: try: # Ensure the first two items are numbers start_time = int(row[0]) end_time = int(row[1]) # Append the cleaned row cleaned_rows.append(row) except ValueError: # If timestamps are not valid integers, move to revision revision_rows.append(row) print("One problematic row has been added to revision") # If the row has more than 4 items and no consecutive \t, check for \t swapped with space elif len(row) > 4: row_str = "\t".join(row) if ',' in row_str: row_str = re.sub(r',\t', ', ', row_str) # After fixing spaces, split again and check the length row_fixed = row_str.split('\t') if len(row_fixed) == 4: cleaned_rows.append(row_fixed) else: revision_rows.append(row_fixed) print("One problematic row has been added to revision") else: # For rows with incorrect number of elements, move to revision revision_rows.append(row) print("One problematic row has been added to revision") # Write the cleaned rows to the output file with open(output_file, 'w', encoding='utf-8', newline='') as outfile: writer = csv.writer(outfile, delimiter='\t') writer.writerows(cleaned_rows) print(f"**** New cleaned tsv file saved at {output_file} ****") if revision_rows: # Write the revision rows to the revision file if there are rows to review with open(revision_file, 'w', encoding='utf-8', newline='') as revfile: writer = csv.writer(revfile, delimiter='\t') writer.writerows(revision_rows) print(f"**** New revision file saved at {revision_file} ****") if __name__ == "__main__": transcription_dir = sys.argv[1] # Ensure revision directory exist rev_dir = f'{transcription_dir}/revisions' os.makedirs(rev_dir, exist_ok=True) # get the paths to all the tsv files tsv_files = glob.glob(transcription_dir + "/*.tsv") for tsv_file in tsv_files: in_file = tsv_file out_file = in_file rev_file = rev_dir + "/" + tsv_file.split("/")[-1][:-4] + "-rev.tsv" clean_tsv(input_file=in_file, output_file=out_file, revision_file=rev_file)