MIDL 2021, A4, Reinke et. al., Short Oral
Channel: MIDL Society
Date: 2021-08-06

A4 - Common limitations of performance metrics in biomedical image analysis

Annika Reinke, Matthias Eisenmann, Minu Dietlinde Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E Kahn, Jens Kleesiek, Tahsin Kurc, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus Maier-Hein, bjoern menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein

Conference page: https://2021.midl.io/papers/A4

Abstract: While the importance of automatic biomedical image analysis is increasing at an enormous pace, recent meta-research revealed major flaws with respect to algorithm validation. Performance metrics are key for objective, transparent and comparative performance assessment, but little attention has been given to their pitfalls. Under the umbrella of the Helmholtz Imaging Platform (HIP), three international initiatives - the MICCAI Society's challenge working group, the Biomedical Image Analysis Challenges (BIAS) initiative, as well as the benchmarking working group of the MONAI framework - have now joined forces with the mission to generate best practice recommendations with respect to metrics in medical image analysis. Consensus building is achieved via a Delphi process, a popular tool for integrating opinions in large international consortia. The current document serves as a teaser for the results presentation and focuses on the pitfalls of the most commonly used metric in biomedical image analysis, the Dice Similarity Coefficient (DSC), in the categories of (1) mathematical properties/edge cases, (2) task/metric fit and (3) metric aggregation. Being compiled by a large group of experts from more than 30 institutes worldwide, we believe that our framework could be of general interest to the MIDL community and will improve the quality of biomedical image analysis algorithm validation.