Applying V-pipe to SARS-Coronavirus-2 data
Channel: SIB - Swiss Institute of Bioinformatics
Date: 15/07/2020

This short webinar explains — and demonstrates — the use of V-pipe (https://cbg-ethz.github.io/V-pipe/), an end-to-end bioinformatics pipeline that integrates various computational tools for the analysis of SARS-Coronavirus-2 high-throughput sequencing data. It supports the reproducible analysis of genomic diversity in intra-host virus populations for both basic research and medical diagnostics.

The video was recorded live during the course.

Target audience: PhD students, postdocs and other researchers, from any scientific environment (academia, facilities, companies, etc.) interested in COVID-19 data.

Speaker: Ivan Topolsky, bioinformatician and medical doctor.

Any question about this talk? Contact the team v-pipe@bsse.ethz.ch @cbg_ethz

Additional information: 

1. Slide deck for the webinar https://polybox.ethz.ch/index.php/s/uB5EoeBfDQEE4pz The image of an Illumina MiSeq sequencer in slide 24 is used under license from Illumina, Inc. All Rights Reserved.

2. SARS-CoV-2 specific sub-page of V-pipe https://cbg-ethz.github.io/V-pipe/sars-cov-2/ or the written version of this webinar at https://cbg-ethz.github.io/V-pipe/tutorial/sars-cov2/

3. Reference: Posada-Céspedes et al. V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data. bioRxiv 2020.06.09.142919; https://doi.org/10.1101/2020.06.09.142919