Tutorial - Intro to segmentation in ITKSNAP
Channel: ofgulban
Date: 2023-03-02

- ITKSNAP: http://www.itksnap.org/pmwiki/pmwiki.php
- Data used in this video is at: https://osf.io/n5bj7/
- I am segmenting "lateral geniculate nucleus" (LGN) using 0.35 mm isotropic magnetic resonance imaging (MRI) data. The dataset is acquired using a 7 Tesla MRI scanner located within Maastricht University, Scannexus facilities. See references below for further details.
- In this video I was using a Wacom Intuos drawing tablet when I was going though manually labeling the LGN slices.

# References
- Gulban, O.F., Bollmann, S., Huber, L., Wagstyl, K., Goebel, R., Poser, B.A., Kay, K., Ivanov, D., 2022. Mesoscopic in vivo human T2* dataset acquired using quantitative MRI at 7 Tesla. NeuroImage 264, 119733. https://doi.org/10.1016/j.neuroimage.2022.119733

- Tourdias, T., Saranathan, M., Levesque, I.R., Su, J., Rutt, B.K., 2014. Visualization of intra-thalamic nuclei with optimized white-matter-nulled MPRAGE at 7T. NeuroImage 84, 534–45. https://doi.org/10.1016/j.neuroimage.2013.08.069