Browsing scRNA-seq Clustering Data with NeuroCave
Channel: Morris Chukhman
Date: 2022-04-06

Single-cell RNA Sequencing (scRNA-seq) data from a Glioblastoma Multiform brain tumor core sample is clustered with the MDS, tSNE and UMAP algorithms in R and color coded for cluster assignment as well as the cells harboring of a gene of interest, the HELB-TSPAN31 fusion. It is visualized in 3D with spherical glyphs  depicting cells and cubic glyphs representing genes on a split screen display with cells on the left and genes in the right viewport. The use case is compared to a conventional scRNA-seq  analysis.

Live Demo:
https://rna.dogstarlabs.com/NeuroCave/visualization.html?dataset=DemoGBMBTS6TU7&load=0&lut=GBMBTS6TU2048

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6145855/