Network Biology: Introduction to STRING and Cytoscape
Channel: Lars Juhl Jensen
Date: 2020-04-01

This lecture and software demo will cover the STRING database of protein interactions, related online database resources, the Cytoscape network analysis framework, and how the Cytoscape stringApp allows these to all be used together for omics data visualization.

This is part of the "Statistical Methods in Bioinformatics" Ph.D. course offered by University of Copenhagen.

0:00 Waiting screen
17:00 Pre-course chat
24:50 STRING lecture
59:21 Break
1:04:30 Text mining lecture
1:16:35 Questions and answers
1:29:35 Break
1:41:20 Hands-on STRING exercises
2:10:26 Cytoscape lecture
2:27:48 Questions, answers, and live demo
3:09:32 The end

Hands-on exercises are available at https://jensenlab.org/training/