Single cell transcriptomics - Cell type annotation (7 of 10)
Channel: SIB - Swiss Institute of Bioinformatics
Date: 2023-09-29

The video was recorded live during the SIB course “Single cell Transcriptomics” streamed on 06-08 March 2023.   

The course materials can be found in the dedicated GitHub page:  https://sib-swiss.github.io/single-cell-training/ 

This video contains information on how to annotate cells captured within a single-cell RNA seq experiment and assign them to cell types. Automatic and manual annotation methods are compared, and the method used by the R package SingleR is explained. A list of databases containing marker genes is also presented. 

 

-Target audience: PhD students, post-docs and researchers in life sciences who are doing bioinformatics analyses and want to get introduced to single cell transcriptomics data analysis. 

-Speaker: Dr. Tania Wyss, SIB Swiss Institute of Bioinformatics  

Any questions about this talk? Contact: Tania Wyss, Tania.Wyss@sib.swiss  

 This video is available under the creative commons license CC-BY-4.0