RDMbites | High-throughput sequencing data repositories
Channel: ELIXIR-UK
Date: 2023-12-21

Relevant links:
EBI: https://www.ebi.ac.uk/
ArrayExpress: https://www.ebi.ac.uk/biostudies/arrayexpress
ENA: https://www.ebi.ac.uk/ena/browser/home
NCBI: https://www.ncbi.nlm.nih.gov/
GEO: https://www.ncbi.nlm.nih.gov/geo/
SRA: https://www.ncbi.nlm.nih.gov/sra
DDBJ: https://www.ddbj.nig.ac.jp/index-e.html
GEA: https://www.ddbj.nig.ac.jp/gea/index-e.html
DRA: https://www.ddbj.nig.ac.jp/dra/index-e.html
INSDC: https://www.insdc.org/
https://ena-docs.readthedocs.io/en/latest/submit/general-guide/metadata.html
__________________
Creators: Korneel Hens (https://orcid.org/0000-0002-0362-7007 )
Reviewers: Robert Andrews (https://orcid.org/0000-0002-3491-2361) 
___________________
The RDMbites are funded by the ELIXIR-UK: FAIR Data Stewardship training UKRI award (MR/V038966/1)
___________________
00:00 Learning objectives
00:29 Which HTS databases are there?
02:04 How are the HTS repositories interconnected?
03:05 SRA Metadata model
03:57 Metadata models
04:41 Acknowledgements