GEP Tools | Gene Record Finder
Channel: Genomics Education Partnership
Date: 19/04/2021

In this video, Sisi Hon, a TA for the GEP, will cover everything you should know about the Gene Record Finder and how to use this tool for GEP annotation projects.

Time Stamps:
0:00 Intro to Gene Record Finder (GRF)
0:45 Pp2A-29B & Searching "FlyBase Gene Symbol"
1:43 Gene Details Section
2:54 FlyBase ID
3:12 GBrowse
3:33 mRNA Details Section
3:48 Gene Isoforms Definition
4:19 GEP UCSC Genome Browser in Dmel
5:00 CDS Usage Map Section
5:34 Corresponding CDS Sequence Table
6:13 Amino Acids & STOP Codons
6:24 Transcript vs Polypeptide Details Tab
6:42 Obtaining the Sequences
7:23 CDS Workbook
8:01 Demonstration of Using CDS Workbook

Useful Links:
Gene Record Finder: http://gander.wustl.edu/%7ewilson/dmelgenerecord/index.html
Genome Browser: http://gander.wustl.edu/cgi-bin/hgGateway
BLAST: https://blast.ncbi.nlm.nih.gov/Blast.cgi

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