Text mining + enrichment analysis = publication enrichment? #shorts
Channel: Lars Juhl Jensen
Date: 2021-08-29

A ~1 minute introduction to the idea of publication enrichment analysis. Through text mining, specifically named entity recognition, each publication can be turned into a gene set, resulting in millions of gene sets if done systematically for the biomedical literature. These can be used as any other gene sets for performing gene set enrichment analysis (GSEA). The result is a list of papers that mention many of your proteins of interest. Publication enrichment analysis is already implemented in the STRING web resource, where you can try it out (https://string-db.org).

Separate videos are available on the core concepts of biomedical text mining (https://youtu.be/NcntH0WYp1M) and enrichment analysis (https://youtu.be/2NC1QOXmc5o).