How to use GitHub flow in a bioinformatics project: using issues and branches in git (CC015)
Channel: Riffomonas Project
Date: 2020-07-09

In this screencast tutorial, Pat Schloss shows how you can incorporate GitHub or Git flow to add organization to your project. GitHub flow will allow us to creat a todo list for our project that we will systematically work through as we determine to what degree inter- and intra-genomic variation limit the interpretation of amplicon sequence variants (ASVs; aka exact sequence variants or ESVs).

Pat demonstrates these concepts by live coding at the command line interface using RStudio, GitHub Flow, and make. He then turns viewers loose to work through several activities to answer related questions and finishes by giving his solutions.

The site that contains the exercises and solutions can be found at http://www.riffomonas.org/code_club/2020-07-09-github-flow.



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