EMBL-ABR Training: 20180822 Genome Assembly and Annotation with Galaxy Australia
Channel: Australian BioCommons
Date: 2018-08-24

TITLE:
Intro to Genome Assembly and Annotation with Galaxy Australia

SYNOPSIS:
This workshop introduces attendees to Galaxy Australia and its use in genome assembly and annotation. A talk and demonstration is followed by a hands-on tutorial. The intended audience are researchers and students with an interest in genome assembly. A knowledge of basic biology is assumed.

LEARNING OUTCOMES:
By the end of this training, participants will be able to use tools in Galaxy Australia to perform genome assembly of microbial data.

TOPICS COVERED:

Galaxy Australia
   - What is it? 00:11:00 - 00:18:44
   - Log in and get started 00:18:47 - 00:24:35

Genome Assembly
   - What is it? 00:25:08 - 00:35:40
   - How can we use Galaxy Australia to assemble a bacterial genome from raw sequencing data? An example using bacterial data 00:35:50 - 01:20:10

Genome Annotation
   - What is it? 01:39:36 - 01:46:18
   - How can we use Galaxy Australia to annotate an assembled bacterial genome? An example using bacterial data. 01:46:24 - 02:22:15

LEAD TRAINER:
Dr Anna Syme, Galaxy Australia and Melbourne Bioinformatics

RESOURCES:
   - Course Schedule (includes links to presentations slides and exercises): https://tinyurl.com/galaxyworkshop1

   - Discussion Board outlining questions asked throughout this session (and answers): https://tinyurl.com/galaxyworkshop1discuss