Metabolome and pathways (Bioinformatics S6E3)
Channel: Danny Arends
Date: 2021-12-08

Important databases in metabolomics and pathway analysis are discussed, as well as pathway visualizations using Cytoscape. We end with a failed live demo of Cytoscape.

#Lectures @ https://dannyarends.nl/bioinformatik/
#Programming #Assignments and #Answers @ https://dannyarends.nl/bioinfo/
#Playlist: https://www.youtube.com/playlist?list=PLhR2Go-lh6X5A5WbiO3SPHuoWbwpNznUl

Chapters:
00:00 Glycolysis, citric acid cycle, respiratory chain
02:55 Hexose mono-phosphate shunt
04:05 Glycogen synthesis and degradation
05:33 Gluconeogenesis
06:30 The Kyoto Encyclopedia of Genes and Genomes (KEGG) database
11:42 #KEGG database summary
12:15 The Reactome database
13:30 The Human Metabolome database
14:28 Visualizations using #Cytoscape
21:00 Overview / Summary lecture 6
21:15 Never do a live demo - Cytoscape
38:28 Questions / End of the lecture

This is a live-stream recording of the MSc and PhD lecture series: #Bioinformatics for plant and animal sciences, given digitally during the Covid19 pandemic at the Humboldt University in Berlin organized and lectured by Dr Danny Arends.

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This work is licensed under version 3.0 of the Creative Commons CC-BY license. For more information see http://creativecommons.org/licenses/by/3.0/legalcode