Is using Vina within Chimera the best option? Well... (on windows 10)
Channel: Kelvin Ex Machina
Date: 2023-07-06

Using UCSF Chimera to run docking is relatively easy but not the best option. 
However, using UCSF Chimera to curate receptors and ligands it is very useful. 
Here I show three steps of preparing files for docking on Chimera and the results of the docking with vina.
I also recommend using PyRx because it allows for good control of the docking parameters, exhaustivity and reproducibility.