BioPAX | Wikipedia audio article
Channel: wikipedia tts
Date: 2019-03-26

This is an audio version of the Wikipedia Article:
https://en.wikipedia.org/wiki/BioPAX


00:01:34 1 Governance and development
00:02:31 2 Databases with BioPAX Export
00:03:25 3 Software
00:04:25 4 See also



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SUMMARY
=======
BioPAX (Biological Pathway Exchange) is a RDF/OWL-based
standard language to represent biological pathways
at the molecular and cellular level. Its major use is to facilitate the exchange of pathway data.
Pathway data captures our understanding of biological processes, but
its rapid growth necessitates development of databases and computational tools to aid
interpretation. However, the current fragmentation of pathway information across many
databases with incompatible formats presents barriers to its effective use. BioPAX solves this
problem by making pathway data substantially easier to collect, index, interpret and share.
BioPAX can represent metabolic and signaling pathways, molecular and genetic interactions and
gene regulation networks. BioPAX was created through a community process. Through BioPAX,
millions of interactions organized into thousands of pathways across many organisms, from a
growing number of sources, are available. Thus, large amounts of pathway data are available in a
computable form to support visualization, analysis and biological discovery.
It is supported by a variety of online databases (e.g. Reactome) and tools. The latest released version is BioPAX Level 3. There is also an effort to create a version of BioPAX as part of OBO.