Automatically stitching Zeiss .CZI files (LSM700) with Fiji / ImageJ
Channel: pink manta
Date: 2019-02-01

This video is primarily meant for the staff and students of Faculty of Sports and Health Sciences, University of Jyväskylä. Any others interested in the tool are welcome to use it too.

It shows how to use a tool built to automatically stitch .czi files produzed by the LSM 700 confocal system. In the case of  the different Zeiss systems producing .czi files equally, when it comes to metadata, this tool should work with those .czi files as well.

Welcome to use and improve the tool. But please give the due credit when using it. The macro tool, called VIVECA Stitching, can be found here:  https://github.com/seiryoku-zenyo/ImageJ-tools/blob/master/Viveca%20Stitching%20Tool.

Enjoy the tool. Any feedback is welcome.