Uploading Nanopore data to Galaxy
Channel: Peter van Heusden
Date: 2022-03-24

Nanopore data comes from the sequencer as multiple folders, one folder per barcode, with multiple fastq.gz (or fastq) files in each folder. This video illustrates uploading this data to usegalaxy.eu using the FileZilla FTP client, the Rule Based Uploader and a simple workflow. The blog post accompanying this video can be found at http://pvh.wp.sanbi.ac.za/2022/02/22/loading-nanopore-data-into-galaxy/