Defragmentation TS (2022) - Day 5 - cloud-based BioImage Analysis (NEUBIAS Academy & EOSC-Life)
Channel: NEUBIAS
Date: 05/12/2022

"Defragmentation: bringing BioImageAnalysts to the cloud!" - Day 5 - 21 Oct 2022
Training School in BioImage Analysis organized by NEUBIAS Academy & EOSC-Life.

http://neubiasacademy.org/
https://www.eosc-life.eu/

Training materials:
https://github.com/NEUBIAS/Defragmentation_TrainingSchool_EOSC-Life_2022#training-school-material

TS programme:
https://github.com/NEUBIAS/Defragmentation_TrainingSchool_EOSC-Life_2022

====================================
Contents:
00:00 Introduction - Rocco D'Antuono (Crick Advanced Light Microscopy STP, The Francis Crick Institute, London, UK).

00:46 "Metrics and Benchmarking" - Michal Kozubek (Professor, Department head, Centre for Biomedical Image Analysis – Masarik University, Brno, Czechia)

=========
"BIAFLOWS: A BioImage Analysis workflows benchmarking platform" 

48:02 "What is BIAFLOWS" - Volker Baecker (Image analysis /Software Development- MRI-CRBM – BioCampus Montpellier, France).

01:06:11 "How BIAFLOWS works" - Sébastien Tosi (Head of the Image Analysis Core Facility of Danish BioImaging Infrastructure (DBI-INFRA), Denmark).

01:26:15 "BIAFLOWS live demo" - Benjamin Pavie (Bioimage analyst, VIB Bio-imaging core facility, Leuven, Belgium).

01:39:32  "How to add a workflow to BIAFLOWS" - Volker Baecker (Image analysis /Software Development- MRI-CRBM – BioCampus Montpellier, France).

01:55:15 "Future developments of BIAFLOWS" - Sébastien Tosi (Head of the Image Analysis Core Facility of Danish BioImaging Infrastructure (DBI-INFRA), Denmark).