Metabolome and Pathways (Bioinformatics S6E1)
Channel: Danny Arends
Date: 03/12/2021

We'll discuss the answers to lecture 5, and learn about metabolomics and the analysis of metabolism. Learn definitions and what are the difference between Metabolomics, Metabonomic, and exometabolomics.

Lectures @ https://dannyarends.nl/bioinformatik/
Programming Assignments and Answers @ https://dannyarends.nl/bioinfo/
Playlist: https://www.youtube.com/playlist?list=PLhR2Go-lh6X5A5WbiO3SPHuoWbwpNznUl

Chapters:
00:00 Welcome
01:27 Overview of lecture topics
02:37 Answers to the assignments (lecture 7)
02:49 Failing to find the correct sequence of HBA1 from Ensembl
05:30 Wikipedia to the rescue Downloading the HBA1 sequence
06:54 Looking at the HBA1 protein sequence
10:52 Answer Q2 - The InterPro website for HBA1 protein domains
12:18 Answer Q3 - Protein sequence for myostatin (MSTN)
15:53 HBA1 protein domains using Interpro
18:11 Answer Q4 - Difference between the myostatin protein transcripts
19:32 Answer Q5 - IDH1 protein sequence and Amino Acid 109
24:07 IUPAC website and IUPAC Amino Acid codes
25:10 IDH1 sequence in the protein database (PDB)
29:44 The difference between the two myostatin protein variants
36:08 Start of the lecture / Overview
36:58 What is metabolism ? The four major metabolic functions
41:04 Catabolism versus Anabolism
44:56 Autotrophs versus Heterotrophs
51:26 Why study metabolites and the Human Metabolome project
54:10 Which fields use metabolome
55:48 The metabolome - Endogeneous versus Exogenous
58:57 Metabolomis, Metabonomic, and exometabolomics

This is a live-stream recording of the MSc and PhD lecture series: Bioinformatics for plant and animal sciences, given digitally during the Covid19 pandemic at the Humboldt University in Berlin organized and lectured by Dr Danny Arends.

Thanks for taking an interest in my channel 😄If you've made it this far down, support me by giving a like or subscribing. Join me during my live streams Thursday afternoons on Twitch @ https://www.twitch.tv/dannyarends

This work is licensed under version 3.0 of the Creative Commons CC-BY license. 
For more information see http://creativecommons.org/licenses/by/3.0/legalcode

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