Diffusion MRI processing (TOPTUP/EDDY) and reconstruction using DSI Studio
Channel: Frank Yeh
Date: 2021-12-10

Related reading materials:
https://www.sciencedirect.com/science/article/pii/S1053811921009241#sec0015

00:01 Introduction
00:23 Download files from XNAT
01:07 Sort and rename DICOM files
01:39 Convert DICOM to NIFTI and SRC files
02:10 Identify reverse-phase encoding images
03:19 Process SRC files
03:41 TOPUP/EDDY
03:55 Check mask
04:10 Select reconstruction method
04:29 Reconstruction

Acknowledgment
I would like to thank Prof. Kai Huang at the University of Iowa for providing this sample data.