Reviewerly/exHarmony huggingface dataset:
What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask

Coincident with the tsunami of COVID-19–related publications, there has been a surge of studies using real-world data, including those obtained from the electronic health record (EHR). Unfortunately, several of these high-profile publications were retracted because of concerns regarding the soundness and quality of the studies and the EHR data they purported to analyze. These retractions highlight that although a small community of EHR informatics experts can readily identify strengths and flaws in EHR-derived studies, many medical editorial teams and otherwise sophisticated medical readers lack the framework to fully critically appraise these studies. In addition, conventional statistical analyses cannot overcome the need for an understanding of the opportunities and limitations of EHR-derived studies. We distill here from the broader informatics literature six key considerations that are crucial for appraising studies utilizing EHR data: data completeness, data collection and handling (eg, transformation), data type (ie, codified, textual), robustness of methods against EHR variability (within and across institutions, countries, and time), transparency of data and analytic code, and the multidisciplinary approach. These considerations will inform researchers, clinicians, and other stakeholders as to the recommended best practices in reviewing manuscripts, grants, and other outputs from EHR-data derived studies, and thereby promote and foster rigor, quality, and reliability of this rapidly growing field.
Advances in Meta-Heuristic Optimization Algorithms in Big Data Text Clustering

This paper presents a comprehensive survey of the meta-heuristic optimization algorithms on the text clustering applications and highlights its main procedures. These Artificial Intelligence (AI) algorithms are recognized as promising swarm intelligence methods due to their successful ability to solve machine learning problems, especially text clustering problems. This paper reviews all of the relevant literature on meta-heuristic-based text clustering applications, including many variants, such as basic, modified, hybridized, and multi-objective methods. As well, the main procedures of text clustering and critical discussions are given. Hence, this review reports its advantages and disadvantages and recommends potential future research paths. The main keywords that have been considered in this paper are text, clustering, meta-heuristic, optimization, and algorithm.
Multi-Task Learning for Generalized Automatic Modulation Classification Under Non-Gaussian Noise With Varying SNR Conditions

Automatic modulation classification (AMC) is a critical algorithm for the identification of modulation types so as to enable more accurate demodulation in the non-cooperative scenarios. Deep learning (DL)-based AMC is believed as one of the most promising methods with great classification accuracy. However, the conventional CNN-based methods are lack of generality capabilities under time-varying signal-to-noise ratio (SNR) conditions, because these methods are merely trained on specific datasets and can only work under the corresponding condition. In this paper, a novel multi-task learning (MTL)-based generalized AMC method is proposed, and a more realistic scenario is considered, including white non-Gaussian noise and synchronization error. Its generalization capability stems from knowledge-sharing-based MTL in varying noise scenarios. In detail, multiple CNN models with the same structure are trained for multiple SNR conditions, but they share their knowledge (e.g. model weight) with each other. Thus, MTL can extract the general features from datasets in different noise scenarios. Simulation results show that our proposed architecture can achieve higher robustness and generalization than the conventional ones.
Does government social media promote users' information security behavior towards COVID-19 scams? Cultivation effects and protective motivations

Cybercriminals are taking advantage of the COVID-19 outbreak and offering COVID-19-related scams to unsuspecting people. Currently, there is a lack of studies that focus on protecting people from COVID-19-related cybercrimes. Drawing upon Cultivation Theory and Protection Motivation Theory, we develop a research model to examine the cultivation effect of government social media on peoples' information security behavior towards COVID-19 scams. We employ structural equation modeling to analyze 240 survey responses collected from social media followers of government accounts. Our results suggest that government social media account followers' participation influences their information security behavior through perceived severity, perceived vulnerability, self-efficacy, and response efficacy. Our study highlights the importance of government social media for information security management during crises.
Fake face detection via adaptive manipulation traces extraction network

With the proliferation of face image manipulation (FIM) techniques such as Face2Face and Deepfake, more fake face images are spreading over the internet, which brings serious challenges to public confidence. Face image forgery detection has made considerable progresses in exposing specific FIM, but it is still in scarcity of a robust fake face detector to expose face image forgeries under complex scenarios such as with further compression, blurring, scaling, etc. Due to the relatively fixed structure, convolutional neural network (CNN) tends to learn image content representations. However, CNN should learn subtle manipulation traces for image forensics tasks. Thus, we propose an adaptive manipulation traces extraction network (AMTEN), which serves as pre-processing to suppress image content and highlight manipulation traces. AMTEN exploits an adaptive convolution layer to predict manipulation traces in the image, which are reused in subsequent layers to maximize manipulation artifacts by updating weights during the back-propagation pass. A fake face detector, namely AMTENnet, is constructed by integrating AMTEN with CNN. Experimental results prove that the proposed AMTEN achieves desirable pre-processing. When detecting fake face images generated by various FIM techniques, AMTENnet achieves an average accuracy up to 98.52%, which outperforms the state-of-the-art works. When detecting face images with unknown post-processing operations, the detector also achieves an average accuracy of 95.17%.
Public acceptance of privacy-encroaching policies to address the COVID-19 pandemic in the United Kingdom

The nature of the COVID-19 pandemic may require governments to use privacy-encroaching technologies to help contain its spread. One technology involves co-location tracking through mobile Wi-Fi, GPS, and Bluetooth to permit health agencies to monitor people’s contact with each other, thereby triggering targeted social-distancing when a person turns out to be infected. The effectiveness of tracking relies on the willingness of the population to support such privacy encroaching measures. We report the results of two large surveys in the United Kingdom, conducted during the peak of the pandemic, that probe people’s attitudes towards various tracking technologies. The results show that by and large there is widespread acceptance for co-location tracking. Acceptance increases when the measures are explicitly time-limited and come with opt-out clauses or other assurances of privacy. Another possible future technology to control the pandemic involves “immunity passports”, which could be issued to people who carry antibodies for the COVID-19 virus, potentially implying that they are immune and therefore unable to spread the virus to other people. Immunity passports have been considered as a potential future step to manage the pandemic. We probe people’s attitudes towards immunity passports and find considerable support overall, although around 20% of the public strongly oppose passports.
New Generation Deep Learning for Video Object Detection: A Survey

Video object detection, a basic task in the computer vision field, is rapidly evolving and widely used. In recent years, deep learning methods have rapidly become widespread in the field of video object detection, achieving excellent results compared with those of traditional methods. However, the presence of duplicate information and abundant spatiotemporal information in video data poses a serious challenge to video object detection. Therefore, in recent years, many scholars have investigated deep learning detection algorithms in the context of video data and have achieved remarkable results. Considering the wide range of applications, a comprehensive review of the research related to video object detection is both a necessary and challenging task. This survey attempts to link and systematize the latest cutting-edge research on video object detection with the goal of classifying and analyzing video detection algorithms based on specific representative models. The differences and connections between video object detection and similar tasks are systematically demonstrated, and the evaluation metrics and video detection performance of nearly 40 models on two data sets are presented. Finally, the various applications and challenges facing video object detection are discussed.
Mean-shift outlier detection and filtering

Traditional outlier detection methods create a model for data and then label as outliers for objects that deviate significantly from this model. However, when dat has many outliers, outliers also pollute the model. The model then becomes unreliable, thus rendering most outlier detectors to become ineffective. To solve this problem, we propose a mean-shift outlier detector. This detector employs a mean-shift technique to modify data and cancel the bias caused by the outliers. The mean-shift technique replaces every object by the mean of its k-nearest neighbors which essentially removes the effect of outliers before clustering without the need to know the outliers. In addition, it also detects outliers based on the distance shifted. Our experiments show that the proposed method works well regardless of the number of outliers in the data. This method outperforms all state-of-the-art methods tested, with both real-world numeric datasets as well as generated numeric and string datasets.
Adaptive Gradient Sparsification for Efficient Federated Learning: An Online Learning Approach

Federated learning (FL) is an emerging technique for training machine learning models using geographically dispersed data collected by local entities. It includes local computation and synchronization steps. To reduce the communication overhead and improve the overall efficiency of FL, gradient sparsification (GS) can be applied, where instead of the full gradient, only a small subset of important elements of the gradient is communicated. Existing work on GS uses a fixed degree of gradient sparsity for i.i.d.-distributed data within a datacenter. In this paper, we consider adaptive degree of sparsity and non-i.i.d. local datasets. We first present a fairness-aware GS method which ensures that different clients provide a similar amount of updates. Then, with the goal of minimizing the overall training time, we propose a novel online learning formulation and algorithm for automatically determining the near-optimal communication and computation trade-off that is controlled by the degree of gradient sparsity. The online learning algorithm uses an estimated sign of the derivative of the objective function, which gives a regret bound that is asymptotically equal to the case where exact derivative is available. Experiments with real datasets confirm the benefits of our proposed approaches, showing up to 40% improvement in model accuracy for a finite training time.
Sparse GPU Kernels for Deep Learning

Scientific workloads have traditionally exploited high levels of sparsity to accelerate computation and reduce memory requirements. While deep neural networks can be made sparse, achieving practical speedups on GPUs is difficult because these applications have relatively moderate levels of sparsity that are not sufficient for existing sparse kernels to outperform their dense counterparts. In this work, we study sparse matrices from deep learning applications and identify favorable properties that can be exploited to accelerate computation. Based on these insights, we develop high-performance GPU kernels for two sparse matrix operations widely applicable in neural networks: sparse matrix-dense matrix multiplication and sampled dense- dense matrix multiplication. Our kernels reach 27% of singleprecision peak on Nvidia V100 GPUs. Using our kernels, we demonstrate sparse Transformer and MobileNet models that achieve 1.2-2.1× speedups and up to 12.8× memory savings without sacrificing accuracy.
Survey on Blockchain-Based Smart Contracts: Technical Aspects and Future Research

The industrial and computing research context revolutionized in various directions during the last decades. The blockchain-based smart contract embraced as a significant research interest due to its distinguishing features such as decentralized storage of transactions, autonomous execution of contract codes, and decentralized establishment of the trust. Blockchain-based smart contracts can transform the working architecture of almost all industries towards elevated service standards. The use cases of blockchain based smart contracts range from industrial applications such as cryptocurrency systems towards logistics, agriculture, real estate, energy trading and so forth. The decentralization concept of blockchain is one of the biggest leaps in technology research since future computing got a super momentum towards the Internet of Things (IoT) and edge computing. A plethora of research is in progress to investigate the opportunities for the applicability of smart contracts and blockchain technologies to various industries. It is important to identify the technical aspects of blockchain-based smart contracts to further improve and sharpen the capabilities which they already owed. This survey is conducted to identify the significant technical aspects of blockchain-based smart contracts with the associated future research directions.
Health Care Cybersecurity Challenges and Solutions Under the Climate of COVID-19: Scoping Review

Background COVID-19 has challenged the resilience of the health care information system, which has affected our ability to achieve the global goal of health and well-being. The pandemic has resulted in a number of recent cyberattacks on hospitals, pharmaceutical companies, the US Department of Health and Human Services, the World Health Organization and its partners, and others. Objective The aim of this review was to identify key cybersecurity challenges, solutions adapted by the health sector, and areas of improvement needed to counteract the recent increases in cyberattacks (eg, phishing campaigns and ransomware attacks), which have been used by attackers to exploit vulnerabilities in technology and people introduced through changes to working practices in response to the COVID-19 pandemic. Methods A scoping review was conducted by searching two major scientific databases (PubMed and Scopus) using the search formula “(covid OR healthcare) AND cybersecurity.” Reports, news articles, and industry white papers were also included if they were related directly to previously published works, or if they were the only available sources at the time of writing. Only articles in English published in the last decade were included (ie, 2011-2020) in order to focus on current issues, challenges, and solutions. Results We identified 9 main challenges in cybersecurity, 11 key solutions that health care organizations adapted to address these challenges, and 4 key areas that need to be strengthened in terms of cybersecurity capacity in the health sector. We also found that the most prominent and significant methods of cyberattacks that occurred during the pandemic were related to phishing, ransomware, distributed denial-of-service attacks, and malware. Conclusions This scoping review identified the most impactful methods of cyberattacks that targeted the health sector during the COVID-19 pandemic, as well as the challenges in cybersecurity, solutions, and areas in need of improvement. We provided useful insights to the health sector on cybersecurity issues during the COVID-19 pandemic as well as other epidemics or pandemics that may materialize in the future.
Coupled neurons with multi-objective optimization benefit incipient fault identification of machinery

Organisms can sense subtle changes in the environment around them such as temperature, vibration and magnetic field. That is because biological neural network interconnected millions of neurons by synapses is able to utilize noise to amplify such subtle changes, and then encode and transmit them to make the corresponding biological responses. Such favorable use of noise can be improved by coupling two different neurons like synapses in organisms to enhance weak useful signature identification. Inspired by above mechanism, we investigate the benefits of noise in the coupled neurons to weak useful signature identification and then propose an adaptive coupled neurons-based method with multi-objective optimization to enhance incipient fault signature identification of machinery for overcoming the drawback that blind noise suppression and cancellation using unwanted noise techniques not only are prone to remove weak useful signature closely related with health states of machinery but also are impossible to cancel strong background noise. In the proposed method, both signal-to-noise ratio (SNR) and residence-time distribution ratio are seen as the multi-objective function to optimize the adjusting parameters of the coupled neurons and rescaling factor simultaneously by using genetic algorithms. Finally, two rolling element bearing experiments including a double row bearing run-to-failure experiment and a high-speed train bearing experiment were performed to demonstrate the feasibility and effectiveness of the proposed method in mechanical incipient fault diagnosis. The experimental results show that the proposed method not only enhances weak fault signature identification of machinery by coupling two different neurons but also is superior to the filter-based methods.
A multi-criteria decision making method based on DNMA and CRITIC with linguistic D numbers for blockchain platform evaluation

Since more and more blockchain platforms have been utilized in diverse business applications, the blockchain platform evaluation becomes significant for clients. There are challenges regarding the blockchain platform evaluation in terms of information uncertainty, multiple types of criteria, and the correlations between criteria. This study dedicates to proposing a method to solve these problems by integrating linguistic D numbers (LDNs), double normalization-based multiple aggregation (DNMA) method, and Criteria Importance Through Inter-criteria Correlation (CRITIC) method. Firstly, a conversion rule of LDNs is introduced to enhance the comparative rule of LDNs. Then, an integrated multiple criteria decision making framework is proposed by incorporating DNMA with LDNs. This method not only can effectively capture the incomplete or uncertain decision-making information with respect to cost, benefit, and target criteria, but also can reduce the loss of decision information caused by single normalized technology. The CRITIC method is integrated in the LDN-based DNMA method to reflect the correlations between criteria in the blockchain platform evaluation process. To investigate the efficiency of the proposed method, a numerical example of blockchain platform evaluation is given. The sensitivity analysis demonstrates the robustness and stability of the developed method. The comparative analysis shows that our method can identify the potentially important criteria in the decision-making process effectively.
Deep learning-based six-type classifier for lung cancer and mimics from histopathological whole slide images: a retrospective study

Targeted therapy and immunotherapy put forward higher demands for accurate lung cancer classification, as well as benign versus malignant disease discrimination. Digital whole slide images (WSIs) witnessed the transition from traditional histopathology to computational approaches, arousing a hype of deep learning methods for histopathological analysis. We aimed at exploring the potential of deep learning models in the identification of lung cancer subtypes and cancer mimics from WSIs.We initially obtained 741 WSIs from the First Affiliated Hospital of Sun Yat-sen University (SYSUFH) for the deep learning model development, optimization, and verification. Additional 318 WSIs from SYSUFH, 212 from Shenzhen People's Hospital, and 422 from The Cancer Genome Atlas were further collected for multi-centre verification. EfficientNet-B5- and ResNet-50-based deep learning methods were developed and compared using the metrics of recall, precision, F1-score, and areas under the curve (AUCs). A threshold-based tumour-first aggregation approach was proposed and implemented for the label inferencing of WSIs with complex tissue components. Four pathologists of different levels from SYSUFH reviewed all the testing slides blindly, and the diagnosing results were used for quantitative comparisons with the best performing deep learning model.We developed the first deep learning-based six-type classifier for histopathological WSI classification of lung adenocarcinoma, lung squamous cell carcinoma, small cell lung carcinoma, pulmonary tuberculosis, organizing pneumonia, and normal lung. The EfficientNet-B5-based model outperformed ResNet-50 and was selected as the backbone in the classifier. Tested on 1067 slides from four cohorts of different medical centres, AUCs of 0.970, 0.918, 0.963, and 0.978 were achieved, respectively. The classifier achieved high consistence to the ground truth and attending pathologists with high intraclass correlation coefficients over 0.873.Multi-cohort testing demonstrated our six-type classifier achieved consistent and comparable performance to experienced pathologists and gained advantages over other existing computational methods. The visualization of prediction heatmap improved the model interpretability intuitively. The classifier with the threshold-based tumour-first label inferencing method exhibited excellent accuracy and feasibility in classifying lung cancers and confused nonneoplastic tissues, indicating that deep learning can resolve complex multi-class tissue classification that conforms to real-world histopathological scenarios.