Reviewerly/exHarmony huggingface dataset:
Bidynamical all-optical reservoir computing for parallel task processing

A bidynamical all-optical reservoir computing (RC) system for parallel task processing is proposed based on a unidirectional semiconductor optical amplifier optical fiber loop. The polarization dynamics and intensity dynamics are excited by the input signals injected into the reservoir via phase modulation and intensity modulation, respectively. Simultaneous computation of two independent tasks is implemented based on the dynamical responses in polarization and intensity of the optical fiber loop. To our knowledge, this is the first time that two kinds of dynamical responses of an all-optical RC system are used as independent task processing channels to implement parallel task processing. The proposed RC system can achieve good parallel task processing performance with low system cost.
An intelligent adverse delivery outcomes prediction model based on the fusion of multiple obstetric clinical data

AbstractAdverse delivery outcomes is a major re-productive health problem that affects the physical and mental health of pregnant women. Obviously, obstetric clinical data has periodically time series characteristics. This paper proposed a three stage adverse delivery outcomes prediction model via the fusion of multiple time series clinical data. The first stage is data aggregation, in which the data set is collected from the obstetric clinical data and divided based on time series features. In the second stage, a multi-channel gated cycle unit is used to solve the calculation error caused by irregular sampling of time series data. The hidden layer feature vector is connected with the fully connected layer, reshaped into a new one-dimensional feature, and fused with the non-time series data into a new data set. The third stage is the prediction stage of adverse delivery outcomes. By connecting the multi-channel gated cycle unit with the extreme gradient lift, the data transmitted in the corresponding channel is used in the feature extraction stage, in which the weighted entropy-based feature extraction is adopted. With the help of the extracted features, a hybrid artificial neural network architecture (MGRU-XGB) was developed to predict adverse delivery outcomes. The experimental results showed that the hybrid model had the best prediction performance for adverse delivery outcomes compared with other single models in terms of sensitivity, specificity, AUC and other evaluation indexes.Keywords: Adverse delivery outcomesMultiple time series predictionXGBoostGated Recurrent Unit Disclosure StatementNo potential conflict of interest was reported by the authors.Data availability statementData sharing not applicable to this article.Ethical statementThe study design was approved by the local ethics and research committee (written permission with approval number (2019-02-2). All medical procedures were performed in accordance with relevant guidelines and regulations. The committee waived the informed consent requirement for this study because the investigators accessed the database for analysis purposes only and all patient data were de-identified. The authors declare that they have no conflict of interest.Additional informationFundingThe research fundings of this paper were supported by the Jinhua Municipal Science and Technology Planning Project(grant number 2021-3--031), the National Health Commission Scientific Research Project(grant number WKJ-ZJ-2215), and the Hangzhou Science and Technology Development Plan Project(grant number 20201203B230).
A Pre-Trained Deep Learning Model for Fast Online Prediction of Structural Seismic Responses

Deep learning techniques have gradually attracted considerable research interest in numerous application scenarios because of their capacity to simplify and accelerate calculations. Several researchers have adopted deep learning models, primarily end-to-end long short-term memory networks, to predict structural seismic responses in a data-driven manner and have achieved remarkable improvements. However, further research is required to reduce the training cost and complexity while maintaining the prediction accuracy of end-to-end models. In this study, a pre-training strategy was developed to meet these requirements. In brief, a generic base model was pre-trained by embedding the knowledge of calculating the response of single-degree-of-freedom systems, which was used as the basis for building tailored top models for the online prediction of seismic responses of different structures. This strategy modularized and simplified deep-learning-based seismic response prediction for training while maintaining the advantages of the end-to-end method. Proposed method was verified by using both simulation and actual datasets. The results demonstrated that a significantly lower training cost and complexity were required to achieve a prediction accuracy similar to that of the classic end-to-end method. Specifically, there was a reduction in FLOPs ranging from 20% to 80%, and a decrease in training time ranging from 44% to 82%. Moreover, the performance of deep learning with limited actual data was discussed.
Intelligent Breast Mass Classification Approach Using Archimedes Optimization Algorithm with Deep Learning on Digital Mammograms

Breast cancer (BC) has affected many women around the world. To accomplish the classification and detection of BC, several computer-aided diagnosis (CAD) systems have been introduced for the analysis of mammogram images. This is because analysis by the human radiologist is a complex and time-consuming task. Although CAD systems are used to primarily analyze the disease and offer the best therapy, it is still essential to enhance present CAD systems by integrating novel approaches and technologies in order to provide explicit performances. Presently, deep learning (DL) systems are outperforming promising outcomes in the early detection of BC by creating CAD systems executing convolutional neural networks (CNNs). This article presents an Intelligent Breast Mass Classification Approach using the Archimedes Optimization Algorithm with Deep Learning (BMCA-AOADL) technique on Digital Mammograms. The major aim of the BMCA-AOADL technique is to exploit the DL model with a bio-inspired algorithm for breast mass classification. In the BMCA-AOADL approach, median filtering (MF)-based noise removal and U-Net segmentation take place as a pre-processing step. For feature extraction, the BMCA-AOADL technique utilizes the SqueezeNet model with AOA as a hyperparameter tuning approach. To detect and classify the breast mass, the BMCA-AOADL technique applies a deep belief network (DBN) approach. The simulation value of the BMCA-AOADL system has been studied on the MIAS dataset from the Kaggle repository. The experimental values showcase the significant outcomes of the BMCA-AOADL technique compared to other DL algorithms with a maximum accuracy of 96.48%.
YOLO-DRS: A Bioinspired Object Detection Algorithm for Remote Sensing Images Incorporating a Multi-Scale Efficient Lightweight Attention Mechanism

Bioinspired object detection in remotely sensed images plays an important role in a variety of fields. Due to the small size of the target, complex background information, and multi-scale remote sensing images, the generalized YOLOv5 detection framework is unable to obtain good detection results. In order to deal with this issue, we proposed YOLO-DRS, a bioinspired object detection algorithm for remote sensing images incorporating a multi-scale efficient lightweight attention mechanism. First, we proposed LEC, a lightweight multi-scale module for efficient attention mechanisms. The fusion of multi-scale feature information allows the LEC module to completely improve the model’s ability to extract multi-scale targets and recognize more targets. Then, we propose a transposed convolutional upsampling alternative to the original nearest-neighbor interpolation algorithm. Transposed convolutional upsampling has the potential to greatly reduce the loss of feature information by learning the feature information dynamically, thereby reducing problems such as missed detections and false detections of small targets by the model. Our proposed YOLO-DRS algorithm exhibits significant improvements over the original YOLOv5s. Specifically, it achieves a 2.3% increase in precision (P), a 3.2% increase in recall (R), and a 2.5% increase in mAP@0.5. Notably, the introduction of the LEC module and transposed convolutional results in a respective improvement of 2.2% and 2.1% in mAP@0.5. In addition, YOLO-DRS only increased the GFLOPs by 0.2. In comparison to the state-of-the-art algorithms, namely YOLOv8s and YOLOv7-tiny, YOLO-DRS demonstrates significant improvements in the mAP@0.5 metrics, with enhancements ranging from 1.8% to 7.3%. It is fully proved that our YOLO-DRS can reduce the missed and false detection problems of remote sensing target detection.
OBIA: An Open Biomedical Imaging Archive

Abstract With the development of artificial intelligence (AI) technologies, biomedical imaging data play an important role in scientific research and clinical application, but the available resources are limited. Here we present Open Biomedical Imaging Archive (OBIA), a repository for archiving biomedical imaging and related clinical data. OBIA adopts five data objects (Collection, Individual, Study, Series, and Image) for data organization, and accepts the submission of biomedical images of multiple modalities, organs, and diseases. In order to protect personal privacy, OBIA has formulated a unified de-identification and quality control process. In addition, OBIA provides friendly and intuitive web interfaces for data submission, browsing, and retrieval, as well as image retrieval. As of September 2023, OBIA has housed data for a total of 937 individuals, 4136 studies, 24,701 series, and 1,938,309 images covering 9 modalities and 30 anatomical sites. Collectively, OBIA provides a reliable platform for biomedical imaging data management and offers free open access to all publicly available data to support research activities throughout the world. OBIA can be accessed at https://ngdc.cncb.ac.cn/obia.
TiCoSeRec: Augmenting Data to Uniform Sequences by Time Intervals for Effective Recommendation

Sequential recommendation has now been more widely studied, characterized by its well-consistency with real-world recommendation situations. Most existing works model user preference as the transition pattern from the previous item to the next, ignoring the time interval between these two items. However, we find that the time intervals in different sequences may vary significantly and thus result in the ineffectiveness of user modeling due to the issue of <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">preference drift</i> . Thus we propose an assumption that a sequence with uniformly distributed time intervals (denoted as uniform sequence) is more beneficial for preference learning than that with greatly varying time intervals. We then conduct an empirical study on four real datasets and the results support this assumption. Therefore, we advocate to augment sequence data from the perspective of time intervals, which is not studied in the literature. Specifically, we design five operators (Ti-Crop, Ti-CateReorder, Ti-Mask, Ti-Substitute, Ti-Insert) to transform the original non-uniform sequence to uniform sequence with the consideration of time intervals. Then, we devise a control strategy to execute data augmentation on item sequences in different lengths and a looseness range to ensure the generalization (or diversity) of generated data. Finally, we implement these improvements on a state-of-the-art model CoSeRec and propose <bold xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">Ti</b> me <bold xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">I</b> nterval Aware <bold xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">CoSeRec</b> (TiCoSeRec). Experimental results on four datasets demonstrate that TiCoSeRec achieves significantly better performance than other 11 counterparts recommendation techniques.
Weakly supervised segmentation of uterus by scribble labeling on endometrial cancer MR images

Uterine segmentation of endometrial cancer MR images can be a valuable diagnostic tool for gynecologists. However, uterine segmentation based on deep learning relies on artificial pixel-level annotation, which is time-consuming, laborious and subjective. To reduce the dependence on pixel-level annotation, a method of weakly supervised uterine segmentation on endometrial cancer MRI slices is proposed, which only requires scribble label and is enhanced by pseudo-label technology, exponential geodesic distance loss and input disturbance strategy. Specifically, the limitations caused by the shortage of supervision are addressed by dynamically mixing the two outputs of the dual branch network to generate pseudo-labels, expanding supervision information and promoting mutual supervision training. On the other hand, considering the large difference of grayscale intensity between the uterus and surrounding tissues, the exponential geodesic distance loss is introduced to enhance the ability of the network to capture the edge of the uterus. Input disturbance strategies are incorporated to adapt to the flexible and variable characteristics of the uterus and further improve the segmentation performance of the network. The proposed method is evaluated on MRI images from 135 cases of endometrial cancer. Compared with other four weakly supervised segmentation methods, the performance of the proposed method is the best, whose mean DI, HD95, Recall, Precision, ADP are 92.8%, 11.632, 92.7%, 93.6%, 6.5% and increasing by 2.1%, 9.144, 0.6%, 2.4%, 2.9% respectively. The experimental results demonstrate that the proposed method is more effective than other weakly supervised methods and achieves similar performance as those fully supervised.
TL-MSE2-Net: Transfer learning based nested model for cerebrovascular segmentation with aneurysms

Cerebrovascular (i.e., cerebral vessel) segmentation is essential for diagnosing and treating brain diseases. Convolutional neural network models, such as U-Net, are commonly used for this purpose. Unfortunately, such models may not be entirely satisfactory in dealing with cerebrovascular segmentation with tumors due to the following issues: (1) Relatively small number of clinical datasets from patients obtained through different modalities such as computed tomography (CT) and magnetic resonance imaging (MRI), leading to inadequate training and lack of transferability in the modeling; (2) Insufficient feature extraction caused by less attention to both convolution sizes and cerebral vessel edges. Inspired by the existence of similar features on cerebral vessels between normal subjects and patients, we propose a transfer learning strategy based on a pre-trained nested model called TL-MSE2-Net. This model uses one of the publicly available datasets for cerebrovascular segmentation with aneurysms. To address issue (1), our transfer learning strategy leverages a pre-trained model that uses a large number of datasets from normal subjects, providing a potential solution to the lack of sufficient clinical datasets. To tackle issue (2), we structure the pre-trained model based on 3D U-Net, comprising three blocks: ResMul, DeRes, and REAM. The ResMul and DeRes blocks enhance feature extraction by utilizing multiple convolution sizes to capture multiscale features, and the REAM block increases the weight of the voxels on the edges of the given 3D volume. We evaluated the proposed model on one small private clinical dataset and two publicly available datasets. The experimental results demonstrated that our MSE2-Net framework achieved an average Dice score of 70.81 % and 89.08 % on the two publicly available datasets, outperforming other state-of-the-art methods. Ablation studies were also conducted to validate the effectiveness of each block. The proposed TL-MSE2-Net yielded better results than MSE2-Net on a small private clinical dataset, with increases of 5.52 %, 3.37 %, 6.71 %, and 0.85 % for the Dice score, sensitivity, Jaccard index, and precision, respectively.
Beyond One-Hot-Encoding: Injecting Semantics to Drive Image Classifiers

Images are loaded with semantic information that pertains to real-world ontologies: dog breeds share mammalian similarities, food pictures are often depicted in domestic environments, and so on. However, when training machine learning models for image classification, the relative similarities amongst object classes are commonly paired with one-hot-encoded labels. According to this logic, if an image is labelled as spoon, then tea-spoon and shark are equally wrong in terms of training loss. To overcome this limitation, we explore the integration of additional goals that reflect ontological and semantic knowledge, improving model interpretability and trustworthiness. We suggest a generic approach that allows to derive an additional loss term starting from any kind of semantic information about the classification label. First, we show how to apply our approach to ontologies and word embeddings, and discuss how the resulting information can drive a supervised learning process. Second, we use our semantically enriched loss to train image classifiers, and analyse the trade-offs between accuracy, mistake severity, and learned internal representations. Finally, we discuss how this approach can be further exploited in terms of explainability and adversarial robustness.
Optimizing platelet transfusion through a personalized deep learning risk assessment system for demand management

Platelet demand management (PDM) is a resource-consuming task for physicians and transfusion managers of large hospitals. Inpatient numbers and institutional standards play significant roles in PDM. However, reliance on these factors alone commonly results in platelet shortages. Using data from multiple sources, we developed, validated, tested, and implemented a patient-specific approach to support PDM that uses a deep learning-based risk score to forecast platelet transfusions for each hospitalized patient in the next 24 hours. The models were developed using retrospective electronic health record data of 34 809 patients treated between 2017 and 2022. Static and time-dependent features included demographics, diagnoses, procedures, blood counts, past transfusions, hematotoxic medications, and hospitalization duration. Using an expanding window approach, we created a training and live-prediction pipeline with a 30-day input and 24-hour forecast. Hyperparameter tuning determined the best validation area under the precision-recall curve (AUC-PR) score for long short-term memory deep learning models, which were then tested on independent data sets from the same hospital. The model tailored for hematology and oncology patients exhibited the best performance (AUC-PR, 0.84; area under the receiver operating characteristic curve [ROC-AUC], 0.98), followed by a multispecialty model covering all other patients (AUC-PR, 0.73). The model specific to cardiothoracic surgery had the lowest performance (AUC-PR, 0.42), likely because of unexpected intrasurgery bleedings. To our knowledge, this is the first deep learning-based platelet transfusion predictor enabling individualized 24-hour risk assessments at high AUC-PR. Implemented as a decision-support system, deep-learning forecasts might improve patient care by detecting platelet demand earlier and preventing critical transfusion shortages.
Combining clinical notes with structured electronic health records enhances the prediction of mental health crises

An automatic prediction of mental health crises can improve caseload prioritization and enable preventative interventions, improving patient outcomes and reducing costs. We combine structured electronic health records (EHRs) with clinical notes from 59,750 de-identified patients to predict the risk of mental health crisis relapse within the next 28 days. The results suggest that an ensemble machine learning model that relies on structured EHRs and clinical notes when available, and relying solely on structured data when the notes are unavailable, offers superior performance over models trained with either of the two data streams alone. Furthermore, the study provides key takeaways related to the required amount of clinical notes to add value in predictive analytics. This study sheds light on the untapped potential of clinical notes in the prediction of mental health crises and highlights the importance of choosing an appropriate machine learning method to combine structured and unstructured EHRs.
Assessing Political Prudence of Open-domain Chatbots

Politically sensitive topics are still a challenge for open-domain chatbots. However, dealing with politically sensitive content in a responsible, non-partisan, and safe behavior way is integral for these chatbots. Currently, the main approach to handling political sensitivity is by simply changing such a topic when it is detected. This is safe but evasive and results in a chatbot that is less engaging. In this work, as a first step towards a politically safe chatbot, we propose a group of metrics for assessing their political prudence. We then conduct political prudence analysis of various chatbots and discuss their behavior from multiple angles through our automatic metric and human evaluation metrics. The testsets and codebase are released to promote research in this area.
Structured Dialogue Discourse Parsing

Dialogue discourse parsing aims to uncover the internal structure of a multi-participant conversation by finding all the discourse links and corresponding relations. Previous work either treats this task as a series of independent multiple-choice problems, in which the link existence and relations are decoded separately, or the encoding is restricted to only local interaction, ignoring the holistic structural information. In contrast, we propose a principled method that improves upon previous work from two perspectives: encoding and decoding. From the encoding side, we perform structured encoding on the adjacency matrix followed by the matrix-tree learning algorithm, where all discourse links and relations in the dialogue are jointly optimized based on latent tree-level distribution. From the decoding side, we perform structured inference using the modified Chiu-Liu-Edmonds algorithm, which explicitly generates the labeled multi-root non-projective spanning tree that best captures the discourse structure. In addition, unlike in previous work, we do not rely on hand-crafted features; this improves the model’s robustness. Experiments show that our method achieves new state-of-the-art, surpassing the previous model by 2.3 on STAC and 1.5 on Molweni (F1 scores).
Wavelength-division multiplexing optical Ising simulator enabling fully programmable spin couplings and external magnetic fields

Recently various physical systems have been proposed for modeling Ising spin Hamiltonians appealing to solve combinatorial optimization problems with remarkable performance. However, how to implement arbitrary spin-spin interactions is a critical and challenging problem in unconventional Ising machines. Here, we propose a general gauge transformation scheme to enable arbitrary spin-spin interactions and external magnetic fields as well, by decomposing an Ising Hamiltonian into multiple Mattis-type interactions. With this scheme, a wavelength-division multiplexing spatial photonic Ising machine (SPIM) is developed to show the programmable capability of general spin coupling interactions. We exploit the wavelength-division multiplexing SPIM to simulate three spin systems: ± J models, Sherrington-Kirkpatrick models, and only locally connected J 1 - J 2 models and observe the phase transitions. We also demonstrate the ground-state search for solving Max-Cut problem with the wavelength-division multiplexing SPIM. These results promise the realization of ultrafast-speed and high–power efficiency Boltzmann sampling to a generalized large-scale Ising model.