Reviewerly/exHarmony huggingface dataset:
Learning Fixed Points in Generative Adversarial Networks: From Image-to-Image Translation to Disease Detection and Localization

Generative adversarial networks (GANs) have ushered in a revolution in image-to-image translation. The development and proliferation of GANs raises an interesting question: can we train a GAN to remove an object, if present, from an image while otherwise preserving the image? Specifically, can a GAN ``virtually heal'' anyone by turning his medical image, with an unknown health status (diseased or healthy), into a healthy one, so that diseased regions could be revealed by subtracting those two images? Such a task requires a GAN to identify a minimal subset of target pixels for domain translation, an ability that we call fixed-point translation, which no GAN is equipped with yet. Therefore, we propose a new GAN, called Fixed-Point GAN, trained by (1) supervising same-domain translation through a conditional identity loss, and (2) regularizing cross-domain translation through revised adversarial, domain classification, and cycle consistency loss. Based on fixed-point translation, we further derive a novel framework for disease detection and localization using only image-level annotation. Qualitative and quantitative evaluations demonstrate that the proposed method outperforms the state of the art in multi-domain image-to-image translation and that it surpasses predominant weakly-supervised localization methods in both disease detection and localization. Implementation is available at https://github.com/jlianglab/Fixed-Point-GAN.
Deep Learning for Multiple-Image Super-Resolution

Super-resolution reconstruction (SRR) is a process aimed at enhancing spatial resolution of images, either from a single observation, based on the learned relation between low and high resolution, or from multiple images presenting the same scene. SRR is particularly valuable, if it is infeasible to acquire images at desired resolution, but many images of the same scene are available at lower resolution---this is inherent to a variety of remote sensing scenarios. Recently, we have witnessed substantial improvement in single-image SRR attributed to the use of deep neural networks for learning the relation between low and high resolution. Importantly, deep learning has not been exploited for multiple-image SRR, which benefits from information fusion and in general allows for achieving higher reconstruction accuracy. In this letter, we introduce a new method which combines the advantages of multiple-image fusion with learning the low-to-high resolution mapping using deep networks. The reported experimental results indicate that our algorithm outperforms the state-of-the-art SRR methods, including these that operate from a single image, as well as those that perform multiple-image fusion.
Multi-Sentence Argument Linking

We present a novel document-level model for finding argument spans that fill an event’s roles, connecting related ideas in sentence-level semantic role labeling and coreference resolution. Because existing datasets for cross-sentence linking are small, development of our neural model is supported through the creation of a new resource, Roles Across Multiple Sentences (RAMS), which contains 9,124 annotated events across 139 types. We demonstrate strong performance of our model on RAMS and other event-related datasets.
AutoScore: A Machine Learning–Based Automatic Clinical Score Generator and Its Application to Mortality Prediction Using Electronic Health Records

Background Risk scores can be useful in clinical risk stratification and accurate allocations of medical resources, helping health providers improve patient care. Point-based scores are more understandable and explainable than other complex models and are now widely used in clinical decision making. However, the development of the risk scoring model is nontrivial and has not yet been systematically presented, with few studies investigating methods of clinical score generation using electronic health records. Objective This study aims to propose AutoScore, a machine learning–based automatic clinical score generator consisting of 6 modules for developing interpretable point-based scores. Future users can employ the AutoScore framework to create clinical scores effortlessly in various clinical applications. Methods We proposed the AutoScore framework comprising 6 modules that included variable ranking, variable transformation, score derivation, model selection, score fine-tuning, and model evaluation. To demonstrate the performance of AutoScore, we used data from the Beth Israel Deaconess Medical Center to build a scoring model for mortality prediction and then compared the data with other baseline models using the receiver operating characteristic analysis. A software package in R 3.5.3 (R Foundation) was also developed to demonstrate the implementation of AutoScore. Results Implemented on the data set with 44,918 individual admission episodes of intensive care, the AutoScore-created scoring models performed comparably well as other standard methods (ie, logistic regression, stepwise regression, least absolute shrinkage and selection operator, and random forest) in terms of predictive accuracy and model calibration but required fewer predictors and presented high interpretability and accessibility. The nine-variable, AutoScore-created, point-based scoring model achieved an area under the curve (AUC) of 0.780 (95% CI 0.764-0.798), whereas the model of logistic regression with 24 variables had an AUC of 0.778 (95% CI 0.760-0.795). Moreover, the AutoScore framework also drives the clinical research continuum and automation with its integration of all necessary modules. Conclusions We developed an easy-to-use, machine learning–based automatic clinical score generator, AutoScore; systematically presented its structure; and demonstrated its superiority (predictive performance and interpretability) over other conventional methods using a benchmark database. AutoScore will emerge as a potential scoring tool in various medical applications.
One-Shot Operational Quantum Resource Theory

A fundamental approach for the characterization and quantification of all kinds of resources is to study the conversion between different resource objects under certain constraints. Here we analyze, from a resource-nonspecific standpoint, the optimal efficiency of resource formation and distillation tasks with only a single copy of the given quantum state, thereby establishing a unified framework of one-shot quantum resource manipulation. We find general bounds on the optimal rates characterized by resource measures based on the smooth max- or min-relative entropies and hypothesis testing relative entropy, as well as the free robustness measure, providing them with general operational meanings in terms of optimal state conversion. Our results encompass a wide class of resource theories via the theory-dependent coefficients we introduce, and the discussions are solidified by important examples, such as entanglement, coherence, superposition, magic states, asymmetry, and thermal nonequilibrium.
Data-Driven Event Detection of Power Systems Based on Unequal-Interval Reduction of PMU Data and Local Outlier Factor

With the deployment of phasor measurement units (PMU) and wide area measurement system (WAMS), it is feasible to have an insight into the events occurred in power systems based on measured data. Thus, a novel data-driven algorithm based on local outlier factor (LOF) is proposed in this work to detect and locate events in power systems using reduced PMU data. First, the unequal-interval reduction method is presented to reduce the scale of PMU data in sub-stations and reconstruct it in master station of WAMS, which can relieve the burden of communication systems. Then, principle component analysis (PCA)-based similarity search method is proposed to measure the differences of operation state between any two buses. Next, LOF is presented to detect the abnormal events in power systems, and employed to determine the region of the event source. Finally, six cases from the Western electricity coordinating council (WECC) 179-bus power system, a case from the South China power system (SCPS), and a case from the Guangdong power system (GDPS) are utilized to demonstrate the effectiveness of the proposed algorithm. The results show that proposed algorithm is effective and can be applied to event detection, event location, and online monitoring, which can enhance the situation awareness ability of power system operators.
Taskmaster-1: Toward a Realistic and Diverse Dialog Dataset

A significant barrier to progress in data-driven approaches to building dialog systems is the lack of high quality, goal-oriented conversational data.To help satisfy this elementary requirement, we introduce the initial release of the Taskmaster-1 dataset which includes 13,215 task-based dialogs comprising six domains.Two procedures were used to create this collection, each with unique advantages.The first involves a two-person, spoken "Wizard of Oz" (WOz) approach in which trained agents and crowdsourced workers interact to complete the task while the second is "selfdialog" in which crowdsourced workers write the entire dialog themselves.We do not restrict the workers to detailed scripts or to a small knowledge base and hence we observe that our dataset contains more realistic and diverse conversations in comparison to existing datasets.We offer several baseline models including state of the art neural seq2seq architectures with benchmark performance as well as qualitative human evaluations.Dialogs are labeled with API calls and arguments, a simple and cost effective approach which avoids the requirement of complex annotation schema.The layer of abstraction between the dialog model and the service provider API allows for a given model to interact with multiple services that provide similar functionally.Finally, the dataset will evoke interest in written vs. spoken language, discourse patterns, error handling and other linguistic phenomena related to dialog system research, development and design.
Certified Adversarial Robustness with Additive Noise

The existence of adversarial data examples has drawn significant attention in the deep-learning community; such data are seemingly minimally perturbed relative to the original data, but lead to very different outputs from a deep-learning algorithm. Although a significant body of work on developing defense models has been developed, most such models are heuristic and are often vulnerable to adaptive attacks. Defensive methods that provide theoretical robustness guarantees have been studied intensively, yet most fail to obtain non-trivial robustness when a large-scale model and data are present. To address these limitations, we introduce a framework that is scalable and provides certified bounds on the norm of the input manipulation for constructing adversarial examples. We establish a connection between robustness against adversarial perturbation and additive random noise, and propose a training strategy that can significantly improve the certified bounds. Our evaluation on MNIST, CIFAR-10 and ImageNet suggests that our method is scalable to complicated models and large data sets, while providing competitive robustness to state-of-the-art provable defense methods.
Rapid prediction of earthquake ground shaking intensity using raw waveform data and a convolutional neural network

SUMMARY This study describes a deep convolutional neural network (CNN) based technique to predict intensity measurements (IMs) of earthquake ground shaking. The input data to the CNN model consists of multistation, 3C acceleration waveforms recorded during the 2016 Central Italy earthquake sequence for M ≥ 3.0 events. Using a 10 s window starting at the earthquake origin time, we find that the CNN is capable of accurately predicting IMs at stations far from the epicentre which have not yet recorded the maximum ground shaking. The CNN IM predictions do not require previous knowledge of the earthquake source (location and magnitude). Comparison between the CNN model predictions and those obtained with the Bindi et al. GMPE (which requires location and magnitude) shows that the CNN model features similar error variance but smaller bias. Although the technique is not strictly designed for earthquake early warning, we find that it can provide useful estimates of ground motions within 15–20 s after earthquake origin time depending on various setup elements (e.g. times for data transmission, computation, latencies). The technique has been tested on raw data without any initial data pre-selection in order to closely replicate real-time data streaming. When noise examples were included with the earthquake data the CNN was found to be stable, accurately predicting the ground shaking intensity corresponding to the noise amplitude.
Learning for Video Compression With Recurrent Auto-Encoder and Recurrent Probability Model

The past few years have witnessed increasing interests in applying deep learning to video compression. However, the existing approaches compress a video frame with only a few number of reference frames, which limits their ability to fully exploit the temporal correlation among video frames. To overcome this shortcoming, this paper proposes a Recurrent Learned Video Compression (RLVC) approach with the Recurrent Auto-Encoder (RAE) and Recurrent Probability Model (RPM). Specifically, the RAE employs recurrent cells in both the encoder and decoder. As such, the temporal information in a large range of frames can be used for generating latent representations and reconstructing compressed outputs. Furthermore, the proposed RPM network recurrently estimates the Probability Mass Function (PMF) of the latent representation, conditioned on the distribution of previous latent representations. Due to the correlation among consecutive frames, the conditional cross entropy can be lower than the independent cross entropy, thus reducing the bit-rate. The experiments show that our approach achieves the state-of-the-art learned video compression performance in terms of both PSNR and MS-SSIM. Moreover, our approach outperforms the default Low-Delay P (LDP) setting of x265 on PSNR, and also has better performance on MS-SSIM than the SSIM-tuned x265 and the slowest setting of x265. The codes are available at https://github.com/RenYang-home/RLVC.git.
A new learning paradigm for random vector functional-link network: RVFL+

In school, a teacher plays an important role in various classroom teaching patterns. Likewise to this human learning activity, the learning using privileged information (LUPI) paradigm provides additional information generated by the teacher to 'teach' learning models during the training stage. Therefore, this novel learning paradigm is a typical Teacher-Student Interaction mechanism. This paper is the first to present a random vector functional link network based on the LUPI paradigm, called RVFL+. Rather than simply combining two existing approaches, the newly-derived RVFL+ fills the gap between classical randomized neural networks and the newfashioned LUPI paradigm, which offers an alternative way to train RVFL networks. Moreover, the proposed RVFL+ can perform in conjunction with the kernel trick for highly complicated nonlinear feature learning, which is termed KRVFL+. Furthermore, the statistical property of the proposed RVFL+ is investigated, and we present a sharp and high-quality generalization error bound based on the Rademacher complexity. Competitive experimental results on 14 real-world datasets illustrate the great effectiveness and efficiency of the novel RVFL+ and KRVFL+, which can achieve better generalization performance than state-of-the-art methods.
Signet Ring Cell Detection with a Semi-supervised Learning Framework

Signet ring cell carcinoma is a type of rare adenocarcinoma with poor prognosis. Early detection leads to huge improvement of patients’ survival rate. However, pathologists can only visually detect signet ring cells under the microscope. This procedure is not only laborious but also prone to omission. An automatic and accurate signet ring cell detection solution is thus important but has not been investigated before. In this paper, we take the first step to present a semi-supervised learning framework for the signet ring cell detection problem. Self-training is proposed to deal with the challenge of incomplete annotations, and cooperative-training is adapted to explore the unlabeled regions. Combining the two techniques, our semi-supervised learning framework can make better use of both labeled and unlabeled data. Experiments on large real clinical data demonstrate the effectiveness of our design. Our framework achieves accurate signet ring cell detection and can be readily applied in the clinical trails. The dataset will be released soon to facilitate the development of the area.
HyperCore: Hyperbolic and Co-graph Representation for Automatic ICD Coding

The International Classification of Diseases (ICD) provides a standardized way for classifying diseases, which endows each disease with a unique code.ICD coding aims to assign proper ICD codes to a medical record.Since manual coding is very laborious and prone to errors, many methods have been proposed for the automatic ICD coding task.However, most of existing methods independently predict each code, ignoring two important characteristics: Code Hierarchy and Code Co-occurrence.In this paper, we propose a Hyperbolic and Co-graph Representation method (HyperCore) to address the above problem.Specifically, we propose a hyperbolic representation method to leverage the code hierarchy.Moreover, we propose a graph convolutional network to utilize the code co-occurrence.Experimental results on two widely used datasets demonstrate that our proposed model outperforms previous state-ofthe-art methods.
Interacting Qubit-Photon Bound States with Superconducting Circuits

Qubits strongly coupled to a photonic crystal give rise to qubit-photon dressed bound states. These bound states, comprising the qubits and spatially localized photonic modes induced around the qubits, are the basis for many exotic physical scenarios. The localization of these states changes with qubit detuning from the photonic crystal band edge, offering an avenue of in situ control of bound-state interaction. Here, we present experimental results from a device with two transmon qubits coupled to a superconducting microwave photonic crystal and realize tunable on-site and interbound state interactions. We observe a fourth-order two-photon virtual process between bound states indicating strong coupling between the photonic crystal and transmon qubits. Because of their localization-dependent interaction, these states offer the ability to realize one-dimensional chains of bound states with tunable and potentially long-range interactions that preserve the qubits’ spatial organization. The widely tunable, strong, and robust interactions demonstrated with this system are promising benchmarks towards realizing larger, more complex systems that use bound states to build and study quantum spin models.3 MoreReceived 16 March 2018Revised 7 October 2018DOI:https://doi.org/10.1103/PhysRevX.9.011021Published by the American Physical Society under the terms of the Creative Commons Attribution 4.0 International license. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI.Published by the American Physical SocietyPhysics Subject Headings (PhySH)Research AreasCavity quantum electrodynamicsQuantum description of light-matter interactionQuantum optics with artificial atomsQuantum simulationSuperconducting quantum opticsQuantum InformationCondensed Matter, Materials & Applied PhysicsAtomic, Molecular & Optical
Illumination-Adaptive Person Re-Identification

Most person re-identification (ReID) approaches assume that person images are captured under relatively similar illumination conditions. In reality, long-term person retrieval is common, and person images are often captured under different illumination conditions at different times across a day. In this situation, the performances of existing ReID models often degrade dramatically. This paper addresses the ReID problem with illumination variations and names it as {\em Illumination-Adaptive Person Re-identification (IA-ReID)}. We propose an Illumination-Identity Disentanglement (IID) network to dispel different scales of illuminations away while preserving individuals' identity information. To demonstrate the illumination issue and to evaluate our model, we construct two large-scale simulated datasets with a wide range of illumination variations. Experimental results on the simulated datasets and real-world images demonstrate the effectiveness of the proposed framework.
COVID-19 detection using federated machine learning

The current COVID-19 pandemic threatens human life, health, and productivity. AI plays an essential role in COVID-19 case classification as we can apply machine learning models on COVID-19 case data to predict infectious cases and recovery rates using chest x-ray. Accessing patient’s private data violates patient privacy and traditional machine learning model requires accessing or transferring whole data to train the model. In recent years, there has been increasing interest in federated machine learning, as it provides an effective solution for data privacy, centralized computation, and high computation power. In this paper, we studied the efficacy of federated learning versus traditional learning by developing two machine learning models (a federated learning model and a traditional machine learning model)using Keras and TensorFlow federated, we used a descriptive dataset and chest x-ray (CXR) images from COVID-19 patients. During the model training stage, we tried to identify which factors affect model prediction accuracy and loss like activation function, model optimizer, learning rate, number of rounds, and data Size, we kept recording and plotting the model loss and prediction accuracy per each training round, to identify which factors affect the model performance, and we found that softmax activation function and SGD optimizer give better prediction accuracy and loss, changing the number of rounds and learning rate has slightly effect on model prediction accuracy and prediction loss but increasing the data size did not have any effect on model prediction accuracy and prediction loss. finally, we build a comparison between the proposed models’ loss, accuracy, and performance speed, the results demonstrate that the federated machine learning model has a better prediction accuracy and loss but higher performance time than the traditional machine learning model.