Reviewerly/exHarmony huggingface dataset:
Time‐Lapse Image Classification Using a Diffractive Neural Network

Diffractive deep neural networks (D 2 NNs), comprised of spatially engineered passive surfaces, collectively process optical input information at the speed of light propagation through a thin diffractive volume, without any external computing power. Diffractive networks were demonstrated to achieve all‐optical object classification and perform universal linear transformations. Herein, a “time‐lapse” image classification scheme using a diffractive network is demonstrated for the first time, significantly advancing its classification accuracy and generalization performance on complex input objects by using the lateral movements of the input objects and/or the diffractive network, relative to each other. In a different context, such relative movements of the objects and/or the camera are routinely being used for image super‐resolution applications; inspired by their success, a time‐lapse diffractive network is designed to benefit from the complementary information content created by controlled or random lateral shifts. The design space and performance limits of time‐lapse diffractive networks are numerically explored, revealing a blind testing accuracy of 62.03% on the optical classification of objects from the CIFAR‐10 dataset. This constitutes the highest inference accuracy achieved so far using a single diffractive network on the CIFAR‐10 dataset. Time‐lapse diffractive networks will be broadly useful for the spatiotemporal analysis of input signals using all‐optical processors.
Quantifying the LiDAR Sim-to-Real Domain Shift: A Detailed Investigation Using Object Detectors and Analyzing Point Clouds at Target-Level

LiDAR object detection algorithms based on neural networks for autonomous driving require large amounts of data for training, validation, and testing. As real-world data collection and labeling are time-consuming and expensive, simulation-based synthetic data generation is a viable alternative. However, using simulated data for the training of neural networks leads to a domain shift of training and testing data due to differences in scenes, scenarios, and distributions. In this work, we quantify the sim-to-real domain shift by means of LiDAR object detectors trained with a new scenario-identical real-world and simulated dataset. In addition, we answer the questions of how well the simulated data resembles the real-world data and how well object detectors trained on simulated data perform on real-world data. Further, we analyze point clouds at the target-level by comparing real-world and simulated point clouds within the 3D bounding boxes of the targets. Our experiments show that a significant sim-to-real domain shift exists even for our scenario-identical datasets. This domain shift amounts to an average precision reduction of around 14 % for object detectors trained with simulated data. Additional experiments reveal that this domain shift can be lowered by introducing a simple noise model in simulation. We further show that a simple downsampling method to model real-world physics does not influence the performance of the object detectors.
A pathomic approach for tumor-infiltrating lymphocytes classification on breast cancer digital pathology images

Background and objectivesThe detection of tumor-infiltrating lymphocytes (TILs) could aid in the development of objective measures of the infiltration grade and can support decision-making in breast cancer (BC). However, manual quantification of TILs in BC histopathological whole slide images (WSI) is currently based on a visual assessment, thus resulting not standardized, not reproducible, and time-consuming for pathologists. In this work, a novel pathomic approach, aimed to apply high-throughput image feature extraction techniques to analyze the microscopic patterns in WSI, is proposed. In fact, pathomic features provide additional information concerning the underlying biological processes compared to the WSI visual interpretation, thus providing more easily interpretable and explainable results than the most frequently investigated Deep Learning based methods in the literature.MethodsA dataset containing 1037 regions of interest with tissue compartments and TILs annotated on 195 TNBC and HER2+ BC hematoxylin and eosin (H&E)-stained WSI was used. After segmenting nuclei within tumor-associated stroma using a watershed-based approach, 71 pathomic features were extracted from each nucleus and reduced using a Spearman's correlation filter followed by a nonparametric Wilcoxon rank-sum test and least absolute shrinkage and selection operator. The relevant features were used to classify each candidate nucleus as either TILs or non-TILs using 5 multivariable machine learning classification models trained using 5-fold cross-validation (1) without resampling, (2) with the synthetic minority over-sampling technique and (3) with downsampling. The prediction performance of the models was assessed using ROC curves.Results21 features were selected, with most of them related to the well-known TILs properties of having regular shape, clearer margins, high peak intensity, more homogeneous enhancement and different textural pattern than other cells. The best performance was obtained by Random-Forest with ROC AUC of 0.86, regardless of resampling technique.ConclusionsThe presented approach holds promise for the classification of TILs in BC H&E-stained WSI and could provide support to pathologists for a reliable, rapid and interpretable clinical assessment of TILs in BC.
Powering an AI Chatbot with Expert Sourcing to Support Credible Health Information Access

During a public health crisis like the COVID-19 pandemic, a credible and easy-to-access information portal is highly desirable. It helps with disease prevention, public health planning, and misinformation mitigation. However, creating such an information portal is challenging because 1) domain expertise is required to identify and curate credible and intelligible content, 2) the information needs to be updated promptly in response to the fast-changing environment, and 3) the information should be easily accessible by the general public; which is particularly difficult when most people do not have the domain expertise about the crisis. In this paper, we presented an expert-sourcing framework and created Jennifer, an AI chatbot, which serves as a credible and easy-to-access information portal for individuals during the COVID-19 pandemic. Jennifer was created by a team of over 150 scientists and health professionals around the world, deployed in the real world and answered thousands of user questions about COVID-19. We evaluated Jennifer from two key stakeholders’ perspectives, expert volunteers and information seekers. We first interviewed experts who contributed to the collaborative creation of Jennifer to learn about the challenges in the process and opportunities for future improvement. We then conducted an online experiment that examined Jennifer’s effectiveness in supporting information seekers in locating COVID-19 information and gaining their trust. We share the key lessons learned and discuss design implications for building expert-sourced and AI-powered information portals, along with the risks and opportunities of misinformation mitigation and beyond.
Graph contrastive learning with implicit augmentations

Existing graph contrastive learning methods rely on augmentation techniques based on random perturbations (e.g., randomly adding or dropping edges and nodes). Nevertheless, altering certain edges or nodes can unexpectedly change the graph characteristics, and choosing the optimal perturbing ratio for each dataset requires onerous manual tuning. In this paper, we introduce Implicit Graph Contrastive Learning (iGCL), which utilizes augmentations in the latent space learned from a Variational Graph Auto-Encoder by reconstructing graph topological structure. Importantly, instead of explicitly sampling augmentations from latent distributions, we further propose an upper bound for the expected contrastive loss to improve the efficiency of our learning algorithm. Thus, graph semantics can be preserved within the augmentations in an intelligent way without arbitrary manual design or prior human knowledge. Experimental results on both graph-level and node-level show that the proposed method achieves state-of-the-art accuracy on downstream classification tasks compared to other graph contrastive baselines, where ablation studies in the end demonstrate the effectiveness of modules in iGCL.
Clustered Relational Thread-Modular Abstract Interpretation with Local Traces

Abstract We construct novel thread-modular analyses that track relational information for potentially overlapping clusters of global variables – given that they are protected by common mutexes. We provide a framework to systematically increase the precision of clustered relational analyses by splitting control locations based on abstractions of local traces . As one instance, we obtain an analysis of dynamic thread creation and joining. Interestingly, tracking less relational information for globals may result in higher precision. We consider the class of 2-decomposable domains that encompasses many weakly relational domains (e.g., Octagons ). For these domains, we prove that maximal precision is attained already for clusters of globals of sizes at most 2.
Resource theory of quantum scrambling

Quantum chaos has become a cornerstone of physics through its many applications. One trademark of quantum chaotic systems is the spread of local quantum information, which physicists call scrambling. In this work, we introduce a mathematical definition of scrambling and a resource theory to measure it. We also describe two applications of this theory. First, we use our resource theory to provide a bound on magic, a potential source of quantum computational advantage, which can be efficiently measured in experiment. Second, we also show that scrambling resources bound the success of Yoshida's black hole decoding protocol.
SAR Despeckling Using a Denoising Diffusion Probabilistic Model

Speckle is a type of multiplicative noise that affects all coherent imaging modalities including Synthetic Aperture Radar (SAR) images. The presence of speckle degrades the image quality and can adversely affect the performance of SAR image applications such as automatic target recognition and change detection. Thus, SAR despeckling is an important problem in remote sensing. In this paper, we introduce SAR-DDPM, a denoising diffusion probabilistic model for SAR despeckling. The proposed method employs a Markov chain that transforms clean images to white Gaussian noise by successively adding random noise. The despeckled image is obtained through a reverse process that predicts the added noise iteratively, using a noise predictor conditioned on the speckled image. Additionally, we propose a new inference strategy based on cycle spinning to improve the despeckling performance. Our experiments on both synthetic and real SAR images demonstrate that the proposed method leads to significant improvements in both quantitative and qualitative results over the state-of-the-art despeckling methods. The code is available at: https://github.com/malshaV/SAR_DDPM.
Community recommendations for geochemical data, services and analytical capabilities in the 21st century

The majority of geochemical and cosmochemical research is based upon observations and, in particular, upon the acquisition, processing and interpretation of analytical data from physical samples. The exponential increase in volumes and rates of data acquisition over the last century, combined with advances in instruments, analytical methods and an increasing variety of data types analysed, has necessitated the development of new ways of data curation, access and sharing. Together with novel data processing methods, these changes have enabled new scientific insights and are driving innovation in Earth and Planetary Science research. Yet, as approaches to data-intensive research develop and evolve, new challenges emerge. As large and often global data compilations increasingly form the basis for new research studies, institutional and methodological differences in data reporting are proving to be significant hurdles in synthesising data from multiple sources. Consistent data formats and data acquisition descriptions are becoming crucial to enable quality assessment, reusability and integration of results fostering confidence in available data for reuse. Here, we explore the key challenges faced by the geo- and cosmochemistry community and, by drawing comparisons from other communities, recommend possible approaches to overcome them. The first challenge is bringing together the numerous sub-disciplines within our community under a common international initiative. One key factor for this convergence is gaining endorsement from the international geochemical, cosmochemical and analytical societies and associations, journals and institutions. Increased education and outreach, spearheaded by ambassadors recruited from leading scientists across disciplines, will further contribute to raising awareness, and to uniting and mobilising the community. Appropriate incentives, recognition and credit for good data management as well as an improved, user-oriented technical infrastructure will be essential for achieving a cultural change towards an environment in which the effective use and real-time interchange of large datasets is common-place. Finally, the development of best practices for standardised data reporting and exchange, driven by expert committees, will be a crucial step towards making geo- and cosmochemical data more Findable, Accessible, Interoperable and Reusable by both humans and machines (FAIR).
Youth marketing development of special libraries in the digital era: viewpoint from the Taste Library with 7Ps marketing mix

Purpose In the 21st century, libraries are experiencing a significant decline in users due to shifting reading habits and the impact of technology, necessitating library transformation and a heightened emphasis on library marketing. Special libraries, in particular, rely heavily on patrons for survival, often due to their private ownership and limited resources. This paper aims to discuss the aforementioned objectives. Design/methodology/approach This paper examines the Taste Library, a special library in Hong Kong, and analyzes its current practices based on an interview with its founder, website content, and social media presence. The 7Ps Marketing Mix model is employed to assess the strengths and weaknesses of the library's current market position. Findings The Taste Library's existing practices exhibit limitations in attracting young patrons. To address this issue, we propose marketing strategies focused on enhancing social network presence, offering digitized content, and engaging in school outreach. Practical implications By concentrating on youth marketing, this study offers valuable insights for special libraries in developing strategic plans for transitioning and maintaining sustainability. Originality/value Few studies concentrate on marketing small special libraries, particularly in the East, within today's digitized economy.
A Comprehensive Review of Bio-Inspired Optimization Algorithms Including Applications in Microelectronics and Nanophotonics

The application of artificial intelligence in everyday life is becoming all-pervasive and unavoidable. Within that vast field, a special place belongs to biomimetic/bio-inspired algorithms for multiparameter optimization, which find their use in a large number of areas. Novel methods and advances are being published at an accelerated pace. Because of that, in spite of the fact that there are a lot of surveys and reviews in the field, they quickly become dated. Thus, it is of importance to keep pace with the current developments. In this review, we first consider a possible classification of bio-inspired multiparameter optimization methods because papers dedicated to that area are relatively scarce and often contradictory. We proceed by describing in some detail some more prominent approaches, as well as those most recently published. Finally, we consider the use of biomimetic algorithms in two related wide fields, namely microelectronics (including circuit design optimization) and nanophotonics (including inverse design of structures such as photonic crystals, nanoplasmonic configurations and metamaterials). We attempted to keep this broad survey self-contained so it can be of use not only to scholars in the related fields, but also to all those interested in the latest developments in this attractive area.
Vision Transformers for Computational Histopathology

Computational histopathology is focused on the automatic analysis of rich phenotypic information contained in gigabyte whole slide images, aiming at providing cancer patients with more accurate diagnosis, prognosis, and treatment recommendations. Nowadays deep learning is the mainstream methodological choice in computational histopathology. Transformer, as the latest technological advance in deep learning, learns feature representations and global dependencies based on self-attention mechanisms, which is increasingly gaining prevalence in this field. This paper presents a comprehensive review of state-of-the-art vision transformers that have been explored in histopathological image analysis for classification, segmentation, and survival risk regression applications. We first overview preliminary concepts and components built into vision transformers. Various recent applications including whole slide image classification, histological tissue component segmentation, and survival outcome prediction with tailored transformer architectures are then discussed. We finally discuss key challenges revolving around the use of vision transformers and envisioned future perspectives. We hope that this review could provide an elaborate guideline for readers to explore vision transformers in computational histopathology, such that more advanced techniques assisting in the precise diagnosis and treatment of cancer patients could be developed.
Artificial intelligence in interactive marketing: a conceptual framework and research agenda

Purpose Artificial intelligence (AI) is transforming consumers' experiences and how firms identify, create, nurture and manage interactive marketing relationships. However, most marketers do not have a clear understanding of what AI is and how it may mutually benefit consumers and firms. In this paper, the authors conduct an extensive review of the marketing literature, develop an AI framework for understanding value co-creation in interactive buyer–seller marketing relationships, identify research gaps and offer a future research agenda. Design/methodology/approach The authors first conduct an extensive literature review in 16 top marketing journals on AI. Based on this review, an AI framework for understanding value co-creation in interactive buyer–seller marketing relationships was conceptualized. Findings The literature review led to a number of key research findings and summary areas: (1) an historical perspective, (2) definitions and boundaries of AI, (3) AI and interactive marketing, (4) relevant theories in the domain of interactive marketing and (5) synthesizing AI research based on antecedents to AI usage, interactive AI usage contexts and AI-enabled value co-creation outcomes. Originality/value This is one of the most extensive reviews of AI literature in marketing, including an evaluation of in excess or 300 conceptual and empirical research. Based on the findings, the authors offer a future research agenda, including a visual titled “What is AI in Interactive Marketing? AI design factors, AI core elements &amp; interactive marketing AI usage contexts.”
CodeGeeX: A Pre-Trained Model for Code Generation with Multilingual Benchmarking on HumanEval-X

Large pre-trained code generation models, such as OpenAI Codex, can generate syntax-and function-correct code, making the coding of programmers more productive. In this paper, we introduce CodeGeeX, a multilingual model with 13 billion parameters for code generation. CodeGeeX is pre-trained on 850 billion tokens of 23 programming languages as of June 2022. Our extensive experiments suggest that CodeGeeX outperforms multilingual code models of similar scale for both the tasks of code generation and translation on HumanEval-X. Building upon HumanEval (Python only), we develop the HumanEval-X benchmark for evaluating multilingual models by hand-writing the solutions in C++, Java, JavaScript, and Go. In addition, we build CodeGeeX-based extensions on Visual Studio Code, JetBrains, and Cloud Studio, generating 8 billion tokens for tens of thousands of active users per week. Our user study demonstrates that CodeGeeX can help to increase coding efficiency for 83.4% of its users. Finally, CodeGeeX is publicly accessible since Sep. 2022, we open-sourced its code, model weights, API, extensions, and HumanEval-X at https://github.com/THUDM/CodeGeeX.
MedicalSum: A Guided Clinical Abstractive Summarization Model for Generating Medical Reports from Patient-Doctor Conversations

We introduce MedicalSum, a transformer-based sequence-to-sequence architecture for summarizing medical conversations by integrating medical domain knowledge from the Unified Medical Language System (UMLS).The novel knowledge augmentation is performed in three ways: (i) introducing a guidance signal that consists of the medical words in the input sequence, (ii) leveraging semantic type knowledge in UMLS to create clinically meaningful input embeddings, and (iii) making use of a novel weighted loss function that provides a stronger incentive for the model to correctly predict words with a medical meaning.By applying these three strategies, MedicalSum takes clinical knowledge into consideration during the summarization process and achieves stateof-the-art ROUGE score improvements of 0.8-2.1 points (including 6.2% ROUGE-1 error reduction in the PE section) when producing medical summaries of patient-doctor conversations.
Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Again

Large pre-trained language models (PLMs) such as GPT-3 have shown strong in-context learning capabilities, which are highly appealing for domains such as biomedicine that feature high and diverse demands of language technologies but also high data annotation costs.In this paper, we present the first systematic and comprehensive study to compare the few-shot performance of GPT-3 in-context learning with fine-tuning smaller (i.e., BERT-sized) PLMs on two representative biomedical information extraction (IE) tasks: named entity recognition and relation extraction.We follow the true few-shot setting (Perez et al., 2021) to avoid overestimating models' few-shot performance by model selection over a large validation set.We also optimize GPT-3's performance with known techniques such as contextual calibration and dynamic in-context example retrieval.However, our results show that GPT-3 still significantly underperforms compared to simply fine-tuning a smaller PLM.In addition, GPT-3 in-context learning also yields smaller gains in accuracy when more training data becomes available.More in-depth analyses further reveal issues of in-context learning that may be detrimental to IE tasks in general.Given the high cost of experimenting with GPT-3, we hope our study provides helpful guidance for biomedical researchers and practitioners towards more practical solutions such as fine-tuning small PLMs before better in-context learning is available for biomedical IE. 1