RCaz/eu-funding-proposals-sft huggingface dataset:
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Write the concept and methodology overview for 'Endogenous Retroelements As Transcriptional Parasites And Modulators Of Host Immunity' under Horizon Europe.

assistant: **Concept**

Almost half of our genome is occupied by ancient viral sequences that can be mobilized under certain conditions and either jump or copy themselves from one location to another. A group of these mobile genetic elements is called endogenous retroelements. Mobilization of retroelements like LINE1 has been shown to cause cancer via insertional mutagenesis. In recent years LINE1 activation has also been associated with the development of inflammatory diseases and inflammation-driven ageing. This means, we collected substantial evidence that half of our genome can potentially make us sick. Nevertheless, we keep replicating these sequences with every cell division at great energetic cost, suggesting that keeping them provides an evolutionary advantage. In my project I will investigate if sporadic retroelement transcription in healthy cells serves a physiological role in priming the immune system through the constant sensing of retroelement-derived nucleic acids by intracellular nucleic acid sensors. My team and I will investigate how retroelement transcription is regulated in response daily life stresses like virus infections or DNA damage. I propose that instead of regulating transcription themselves, retroelements are largely regulated by canonical gene expression. In mouse models we will investigate how retroelements are sensed by the innate immune system and if this has functional consequences for establishing protective and pathologic immunity. Furthermore, we will investigate the exact molecular mechanism, by which retroelement-derived single stranded cDNA activates the innate immune system, which is currently not understood. Our project involves the development of a new deep sequencing workflow for identification of the genomic origin of retroelement transcripts and a n
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Write the 'Expected Impact' section for the project 'Dissecting the functional importance of eukaryotic protein phosphorylation' (PhosFunc), addressing dissemination and exploitation.

assistant: **Impact**

Cells have evolved intricate systems to sense environmental changes and an initial response to such cues is often driven by post-translational modifications (PTMs) of proteins. Protein phosphorylation is an abundant PTM that modulates protein function via diverse mechanisms. Improvements in mass-spectrometry are unveiling a complex world of PTM regulation with thousands of phosphosites routinely identified per study. We and others have recently shown that phosphosites can diverge quickly during evolution and that a significant fraction may have no biological role in extant species. Identifying functionally relevant phosphosites is therefore a major challenge in cell-signaling. In the past, gene knock-out libraries and genetic methods have been instrumental in dissecting gene-function in a systematic manner. Here, we aim to develop genetic approaches to study the functional relevance of phosphorylation in S. cerevisiae. Phosphoproteomic datasets for 18 ascomycota fungal species will be used to reconstruct the evolutionary history of  phosphorylation events in these species. S. cerevisiae sites will then be grouped according to age and predicted function (e.g. regulation of interactions, activities, etc) and a subset will be selected for mutagenesis. A library of non-phosphorylatable point mutants will be created and used to measure fitness under different stress conditions. These will reveal the functional importance, pleiotropy and relevant pathways of the selected phosphosites. The age, functional groupings and the genetic information will allow us to train predictors of the conditional fitness of phosphosites at proteome-wide level. Lastly, we will study the importance of evolutionary changes in phospho-regulation in natural populations of yeast. Mutations that likely
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Draft an impact statement for 'End-user driven DEmo for cbrNe', explaining its relevance to EU policy priorities under Seventh Framework.

assistant: **Impact**

The accidental or deliberate release of CBRNE materials are low probability events that can have a significant impact on citizens and society. Whenever and wherever they occur, they usually require a gradual and multi-facetted response as they tend to provoke severe and unexpected physical, psychological, societal, economical and political effects that cross EU-borders. Successful CBRNE resilience requires a global System-of-Systems approach. The EDEN project will leverage the added-value of tools and systems from previous R&D efforts and improve CBRNE resilience through their adaptation and integration. The concept of the EDEN project is to provide a “toolbox of toolboxes” EDEN Store to give stakeholders access to interoperable capabilities they deem important, or affordable, from a certified set of applications. It will share the burden of development and allows for lessons to be learned and applications to be enhanced. The benefit of the EDEN concept is that integration will be applied at the application level.  This means that all countries and stakeholders, irrespective of their existing capability levels, will gain immediate advantages through improved interoperability.  EDEN Store will allow capabilities to be shared among multi-national CBRNE stakeholders, which is paramount in cross-border incident management, and through time allow for a build up of common capability across European boundaries. EDEN will be validated by three themed end-user demonstrations (Food Industry, Multi Chemical, Radiological) covering multiple hazards (CBRNE), phases of the security cycle, response tiers, and stakeholders. The EDEN consortium includes CBRNE domain end-users, major stakeholders, large system integration and solution providers, including SMEs with innovative solutions,
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Describe the novelty, innovation potential and advance beyond the state of the art for 'Role of retinoid and estrogen receptors in cell cycle control and apoptosis in breast cancer cells - identification of targets' (1994-1998).

assistant: **Innovation**

Research objectives and content Nuclear receptor ligands (e.g. steroid and thyroid hormone, vitamin D and retinoid agonists and antagonists) are known to modulate cell proliferation, differentiation and apoptosis both in vivo and in vitro. Endocrine therapies in breast and prostate cancer are routinely used in the clinic, and retinoid treatment has largely improved the prognosis of acute promyelocytic leukemia.Moreover a variety of other cancers show promise for treatment with nuclear receptor ligands. Yet, despite the medical and pharmaceutical importance of the nuclear receptor family, and despite rapidly accumulating knowledge about the key players regulating cell cycling and those promoting or inhibiting cell death, next to nothing is known about the regulatory circuits by which nuclear receptors govern the activities of these 'master' genes. Our aim is to decipher these mechanisms by studying nuclear receptor action at multiple functional levels in breast cancer cells (ER+ and ER- cells), a model system in which proliferation,differentiation and apoptosis are regulated by exposure to estrogens, antiestrogens and retinoids. To achieve this goal we will pursue the following studies: a) define the effects of estrogen and retinoids on expression /activity of known key regulators of cell proliferation and cell death, b) identify and characterize, using differential cloning and display technologies, novel factors implicated in these processes c) investigate how estrogens,antiestrogens and retinoic acid alone or in combination affect the expression of these targets, and d) identify synthetic retinoids which can inhibit breast cancer cells proliferation or induce breast cancer cell death. Training content (objective, benefit and expected impact) The completion of this proj
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Write the 'Expected Impact' section for the project 'Boosting R&I Talent Interoperability and Employability in Europe' (BRITE-EU), addressing dissemination and exploitation.

assistant: **Impact**

The BRITE-EU project aims to strengthen research and innovation (R&I) capacity in Widening countries by enhancing employability, promoting cross-sectoral collaboration, and fostering institutional reforms. Starting with the digital health sector, the project leverages the expertise of consortium members from both Widening countries and advanced innovation ecosystems, such as Spain and Sweden. This sector was chosen for its potential to address pressing healthcare challenges and facilitate cross-disciplinary research and innovation.BRITE-EU’s objectives include improving the skills and competences of R&I professionals through knowledge exchange between academia and industry. The project follows a three-phase approach: (1) Needs assessment to identify gaps and opportunities, (2) Capacity-building initiatives, such as training programs and mobility schemes, and (3) Follow-up measures, focusing on institutional reforms and return plans for seconded staff.By adopting a quadruple-helix model, BRITE-EU engages researchers, businesses, and policymakers to create collaborative ecosystems that drive innovation. The project promotes skill development, broadens career prospects, and encourages creativity among researchers. It also facilitates institutional capacity building by transferring best practices in research management, enhancing the European R&I landscape.The expected impacts of BRITE-EU include reversing brain drain, improving gender balance and equal opportunities, and increasing the attractiveness of Widening countries as destinations for excellent R&I talent. Through these efforts, the project will play a pivotal role in creating a sustainable and competitive R&I environment in Europe, ensuring that Widening countries are better integrated into the European Research Ar
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Describe how 'Adversary-Oriented Computing' will create measurable scientific, societal and economic impact aligned with Seventh Framework.

assistant: **Impact**

Recent technological evolutions, including the cloud, the multicore, the social and the mobiles ones, are turning computing ubiquitously distributed. Yet, building high-assurance distributed programs is notoriously challenging. One of the main reasons is that these systems usually seek to achieve several goals at the same time. In short, they need to be efficient, responding effectively in various average-case conditions, as well as reliable, behaving correctly in severe, worst-case conditions. As a consequence, they typically intermingle different strategies: each to cope with some specific condition, e.g., with or without node failures, message losses, time-outs, contention, cache misses,over-sizing, malicious attacks, etc. The resulting programs end up hard to design, prove, verify, implement, test and debug. Not surprisingly, there are anecdotal evidences of the fragility of the most celebrated distributed systems.The goal of this project is to contribute to building high-assurance distributed programs by introducing a new dimension for separating and isolating their concerns, as well as a new scheme for composing and reusing them in a modular manner. In short, the project will explore the inherent power and limitations of a novel paradigm, Adversary-Oriented Computing (AOC). Sub-programs, each implementing a specific strategy to cope with a given adversary, modelling a specific working condition, are designed, proved, verified, implemented, tested and debugged independently. They are then composed, possibly dynamically, as black-boxes within the same global program. The AOC project is ambitious and it seeks to fundamentally revisit the way distributed algorithms are designed and distributed systems are implemented. The gain expected in comparison with today's appro
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Write the 'Expected Impact' section for the project 'A new type of spike: Homoclinic spike generation in cells and networks' (ANewSpike), addressing dissemination and exploitation.

assistant: **Impact**

Action potentials are not all equal. Despite shared biophysical principles and even similar action-potential shape, neurons with different spike generators can encode vastly different aspects of a stimulus and result in radically different behaviors of the embedding network. Differences between spike generators may be hard to discern because the information content of a spike train is not obvious to the naked eye. This is where computational analysis comes into play: theoretical research has shown that spike generation can be classified into a few dynamical types with qualitatively distinct computational properties. Among these, so-called homoclinic spikes  unlike the other commonly considered types  have been largely ignored. Yet, homoclinic spike generators are special because only they react with high sensitivity to inputs during the refractory period. Indeed, it is directly after a spike when homoclinic spikers listen best.As we recently demonstrated, this unique property has computationally exciting consequences: it can provoke a dramatic increase in network synchronization in response to minimal changes in physiological parameters, without requiring alterations in synaptic strength or connectivity. Supported by in-vitro evidence for homoclinic spiking in the rodent brain, ANewSpike explores the intriguing hypothesis that this forgotten spike generator provides a unifying framework for the induction of epileptic activity by a wide range of physiological trigger parameters, from temperature to energy deprivation. Using a theory-experiment approach, we explore (i) the prevalence of homoclinic spiking in the brain, (ii) its ability to promote the transmission of high frequencies, and (iii) its ability to boost network synchronization. Our multi-scale study aims to add
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Draft an impact statement for 'THE STRENGTH OF WOOD FIBRES. ASSOCIATION BETWEEN HEMICELLULOSE AND CELLULOSE AT THE MOLECULAR LEVEL.', explaining its relevance to EU policy priorities under Fourth Framework.

assistant: **Impact**

The strength of heterogeneous fibres such as wood is largely determined by the strength of association between hemicellulose and cellulose. Understanding the association at the molecular level permits a rational evolution of pulping processes, and opens new avenues to the development of designer-made fibres based on agricultural products.In this multidisciplinary project the association between hemicellulose and cellulose fibres will be studied at several levels of molecular detail, both experimentally and theoretically. Hemicellulose such as glucomannan and xyloglucan bind tightly to cellulose in a very specific patterns. The co-crystallisation reduces the number of accessible conformations, which will lower the conformational entropy. The driving force behind efficient binding are hydrogen bonds. These interactions are highly specific, setting high demands on structural complementary. For flexible polymers such as carbohydrates structural changes upon association of the polymer to the substrate can be expected. For small carbohydrate complexes these structural changes are observed. For these small systems desolvation entropy contributes significantly to the affinity, which is probably even larger for polymeric systems. All these issues (specificity, structural changes, entropic effects, desolvation) will be addressed in varying molecular detail to obtain a comprehensive understanding of hemicellulose-cellulose association.The methodological approach is based on state-of-the-art physico-chemical methods. Energetic aspects of the association between hemicellulose and cellulose will be studied by binding assays of radioactive labelled oligomers. Isotherms valid for all densities validated by these experiments will be derived from models with molecular detail, which will
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Write the concept and methodology overview for 'Majorana Fermions in Topological Insulator Platforms' under Horizon 2020.

assistant: **Concept**

Majorana fermions were recently discovered in topological superconductors as exotic quasiparticles having the curious property of being their own antiparticles. They are not only interesting as novel relativistic quasiparticles, but are also useful for realizing fault-tolerant quantum computers. However, currently available platforms to materialize Majorana fermions are limited, and the existing platforms have respective drawbacks for actually building qubits for a scalable quantum computer. Also, various unusual properties are predicted for Majorana fermions, but few have been experimentally addressed. To make a leap in the Majorana-fermion research which is technically highly demanding, one needs to grow state-of-the-art materials and tightly combine them with mesoscopic device research. By performing such an integrated research efforts in the same laboratory, this project aims to explore new platforms for Majorana qubits and to establish new methodologies to address peculiar physics of Majorana fermions. As new platforms, we pursue (i) three-dimensional topological-insulator nanoribbons and (ii) ferromagnetic topological-insulator thin films, both of which will be proximity-coupled to an s-wave superconductor. Each of them allows for conceiving Majorana qubits based on different principles, which will be tested in this project. Also, by developing new methodologies, we will elucidate (i) non-Abelian statistics probed by interferometry and (ii) quantized/universal heat transport phenomena probed by thermal conductance. These works will be complemented by materials growth efforts involving molecular beam epitaxy and detailed characterizations of the local electronic states using scanning tunnelling spectroscopy. If successful, this project will not only contribute to t
system: You are an expert grant writer specializing in European Union research funding proposals. You write compelling, well-structured proposal sections that demonstrate excellence, impact, and implementation quality, using precise EU terminology and following best practices for Horizon Europe, Horizon 2020, and earlier framework programmes.

user: Draft the 'Objectives and Scope' section of a Horizon 2020 proposal for the project 'Bremen International Graduate School of Social Sciences - Doctoral Education in Partnerships'.

assistant: **Objectives**

BIGSSS-departs (BIGSSS Doctoral Education in Partnerships) offers doctoral studies in a program that combines close supervision of dissertation work with demand-tailored education, both embedded in a vibrant research landscape at the Bremen International Graduate School of Social Sciences (BIGSSS). The core disciplines comprise political science, sociology, and psychology. Program participants will follow a 42 months structured curriculum including a stay abroad at an external academic partner institution or with an external non-academic partner. BIGSSS has gathered a network of some of the most prestigious international social science partner organizations. With features such as Career day or the Research day, a strong inter-sectorial exposure both in the partner network and with regards to the composition of the curriculum is an essentially new feature of BIGSSS-departs. Through a secure employment contract, the monthly pay in BIGSSS-departs will include health insurance and all German social security benefits already. Even though BIGSSS-departs is connected to a sole beneficiary (University of Bremen), it uses structures and resources of two universities.


**Keywords:** Structured Doctoral Education, International Partnerships, Bremen, Social Sciences, Inter-sectorial