Evolutionary therapy

Evolutionary therapy is a subfield of evolutionary medicine that utilizes concepts from evolutionary biology in management of diseases caused by evolving entities such as cancer and microbial infections. These evolving disease agents adapt to selective pressure introduced by treatment, allowing them to develop resistance to therapy, making it ineffective.
Evolutionary therapy relies on the notion that Darwinian evolution is the main reason behind lethality of late stage cancer and multi-drug resistant bacterial infections such as methicillin-resistant Staphylococcus aureus. Thus, evolutionary therapy suggests that treatment of such highly dynamic evolving diseases should be changing over time to account for changes in disease populations. Adaptive treatment strategies typically cycle between different drugs or drug doses to take advantage of predictable patterns of disease evolution. This is in contrast to standardized treatment approach which is applied to all patients and equally based on their cancer type and grade. There are still numerous obstacles to the use of evolutionary therapy in clinical practice. These obstacles include high contingency of trajectory, speed of evolution, and inability to track the population state of disease over time.
Context
Resistance to chemotherapy and molecularly targeted therapies is a major problem facing current cancer research. All malignant cancers are fundamentally governed by Darwinian dynamics of the somatic evolution in cancer. Malignant cancers are dynamically evolving clades of cells living in distinct microhabitats that almost certainly ensure the emergence of therapy-resistant populations. Cytotoxic cancer therapies also impose intense evolutionary selection pressures on the surviving cells and thus increase the evolutionary rate. Importantly, the principles of Darwinian dynamics also embody fundamental principles that can illuminate strategies for the successful management of cancer. Eradicating the large, diverse and adaptive populations found in most cancers presents a formidable challenge. One centimetre cubed of cancer contains about 10^9 transformed cells and weighs about 1 gram, which means there are more cancer cells in 10 grams of tumour than there are people on Earth. Unequal cell division and differences in genetic lineages and microenvironmental selection pressures mean that the cells within a tumour are diverse both in genetic make-up and observable characteristics.
Mechanisms
Collateral sensitivity
Resistance to one drug can lead to unwanted cross-resistance to some other drugs and "collateral" sensitivity to yet other drugs This phenomenon can be exploited to create cyclic therapeutic regimes where each subsequent drug would make population of evolving disease agent sensitive to at least one other drug, though this process is difficult secondary to the stochasticity of evolution. Alternative methods include incorporating stochastic control algorithms to direct the evolution to specific states of resistance that encode sensitivity to other drugs.
Treatment strategies
Adaptive therapy
The standard approach to treating cancer is giving patients the maximum tolerated amount of chemotherapy with the goal of doing the maximum possible damage to the tumor without killing the patient. This method is relatively effective, but it also causes major toxicities. Adaptive therapy is an evolutionary therapy that aims to maintain or reduce tumor volume by employing minimum effective drug doses or timed drug holidays. The timing and duration of these holidays, which relies on the ability to modulate resistant vs. sensitive populations of cancer cells through competition, is a subject which has been studied using dynamic programming as well as optimal control in theoretical studies based on Evolutionary game theory based models. The ability to modulate these populations secondary relies on the assumption that there is a both frequency-dependent selection, and an associated fitness cost to that resistance, a form of which, competitive exclusion, has been directly observed in EGFR lung cancer cell lines, and posited in others.
Proof of principle for adaptive therapy has also been established in a recent phase 2 clinical trial as well as in vivo, and more rigorous quantitative studies in vitro.
Double bind
In the evolutionary double bind, one drug causes increased susceptibility of the evolving cancer to another drug. Some have found that effectiveness might be based on interactions of populations through commensalism. Others imply that population control may be possible if resistance to therapy requires a substantial and costly phenotypic adaptation that reduces the organism's fitness.
Extinction therapy
Extinction therapy is inspired by mass extinction events from the Anthropocene era. This treatment strategy is also sometimes referred to as first strike-second strike, where the first strike reduces the size and heterogeneity of a population so that the second strike that follows can kill the surviving, often fragmented population below a threshold by stochastic perturbations.
Conditional defector therapy
A recent article. introduced a potential therapeutic model that aims to create a tragedy of the commons within the populations of pathogens (bacteria, viruses, or even cancer). It is a well-established evolutionary prediction; cheaters can drive the whole population to go extinct. However, the success of free riders is usually supposed to be limited. Because cheater's patches will go extinct rapidly before they arrange successful migrations to other patches, this might be the fundamental problem of cheaters. However, this problem could be solved if we get a manipulated genetically engineered strain of the same pathogen, adopting a conditional defection strategy wherein free-riders would cooperate only for spread. The actors of this selfish strategy would have a high dispersal rate with the lowest possible cost because they share migration costs. Thus, the exploitation rate of public goods and interactions among defectors and cooperators will increase. In other words, this strain of conditional defectors can exclusively cooperate for all collective behaviors related to migration but defect otherwise. Therefore, these selfish successful migrators can be used as suicidal agents to drive the population of pathogens into the self-destruction process.
Current state
Although there is extensive modeling work on evolutionary therapy, there are only a few completed and ongoing clinical trials that use evolutionary therapy. First one conducted in Moffitt Cancer Center on patients with metastatic castrate-resistant prostate cancer showed outcomes that "show significant improvement over published studies and a contemporaneous population." This study met with some criticism.
References
Evolutionary biology
Medical treatments