[47]

[48]

[49]

[50]

RIKEN Beamlines

[51]

[52]

[53]

[54]

[55]

"Manipulating 4f Quadrupolar Pair-interactions in TbB2C2 using a Magnetic Field"
A. M. Mulders, U. Staub, V. Scagnoli, Y. Tanaka, A. Kikkawa, K. Katsumata, J. M. Tonnerre
Physical Review B, 75, (2007), 184438"Study for Noise Reduction in Synchrotron Radiation Based Scanning Tunneling Microscopy by
Developing Insulator-Coat Tip"
A. Saito, K. Takahashi, Y. Takagi, K. Nakamatsu, K. Hanai, Y. Tanaka, D. Miwa, M. Akai-kasaya, S.
Shin, S. Matsui, T. Ishikawa, Y. Kuwahara, M. Aono
Surface Science, 601, (2007), 5294-5299"Nanoscale Surface Elemental Analysis by Synchrotron Radiation Based Scanning TunnelingMicroscope"
A. Saito, H. Takahashi, Y. Takagi, K. Hanai, H. Hosokawa, K. Nakamatsu, Y. Tanaka, D. Miwa, M.
Yabashi, M. Akai, S. Shin, S. Matsui, T. Ishikawa, Y. Kuwahara, M. Aono
⴫㕙⑼ቇ (Journal of the Surface Science Society of Japan), 28, (2007), 452-458"Recoil Effects of Photoelectrons in a Solid"
Y. Takata, Y. Kayanuma, M. Yabashi, K. Tamasaku, Y. Nishino, D. Miwa, Y. Harada, K. Horiba, S.
Shin, S. Tanaka, E. Ikenaga, K. Kobayashi, Y. Senba, H. Ohashi, T. Ishikawa
Physical Review B, 75, (2007), 233404"Interference between Compton Scattering and X-Ray Parametric Down-Conversion"
K. Tamasaku, T. Ishikawa
Physical Review Letters, 98, (2007), 244801"Idler Energy Dependence of Nonlinear Diffraction in X → X + EUV Parametric Down-Conversion"
K. Tamasaku, T. Ishikawa
Acta Crystallographica Section A, 63, (2007), 437-438"Lattice Deformations Induced by an Applied Magnetic Field in the Frustrated Antiferromagnet
HgCr2O4"
Y. Tanaka, Y. Narumi, N. Terada, K. Katsumata, H. Ueda, U. Staub, K. Kindo, T. Fukui, T. Yamamoto,
R. Kammuri, M. Hagiwara, A. Kikkawa, Y. Ueda, H. Toyokawa, T. Ishikawa, H. Kitamura
Journal of the Physical Society of Japan, 76, (2007), 043708"Correlation between Crystal Structure and Magnetism in the Frustrated Antiferromagnet CuFeO 2
under High Magnetic Fields"
N. Terada, Y. Narumi, Y. Sawai, K. Katsumata, U. Staub, Y. Tanaka, A. Kikkawa, T. Fukui, K. Kindo,
T. Yamamoto, R. Kanmuri, M. Hagiwara, H. Toyokawa, T. Ishikawa, H. Kitamura
Physical Review B, 75, (2007), 224411"Coexistence of Strongly Mixed-Valence and Heavy-Fermion Character in SmOs4Sb12 Studied bySoft- and Hard-X-Ray Spectroscopy"
A. Yamasaki, S. Imada, H. Higashimichi, H. Fujiwara, T. Saita, T. Miyamachi, A. Sekiyama, A.
Higashiya, M. Yabashi, K. Tamasaku, D. Miwa, T. Ishikawa, H. Sato, H. Sugawara, D. Kikuchi, S.
Suga
Physical Review Letters, 98, (2007), 156402

BL26B1
Refereed Journals
[1]

[2]

[3]

[4]

BL26B1[2003]"Structural Insight into Modest Binding of a Non-PXXP Ligand to the Signal Transducing Adaptor
Molecule-2 Src Homology 3 Domain"
T. Kaneko, T. Kumasaka, T. Ganbe, T. Sato, K. Miyazawa, N. Kitamura, N. Tanaka
The Journal of Biological Chemistry, 279, (2003), 48162-48168"Crystallization and Preliminary X-ray Crystallographic Studies of NADP-dependent
3-hydroxyisobutyrate Dehydrogenase from Thermus thermophilus HB8"
N. Lokanath, I. Shiromizu, Y. Nodake, M. Sugahara, S. Yokoyama, S. Kuramitsu, M. Miyano, N.
Kunishima
Acta Crystallographica Section D, 59, (2003), 2294-2296[2004]"Crystallization and Preliminary X-ray Crystallographic Study of the Editing Domain of Thermus
thermophilus Isoleucyl-tRNA Synthetase Complexed with Pre- and Post-Transfer Editing-Substrate
Analogues"
R. Fukunaga, S. Yokoyama
Acta Crystallographica Section D, 60, (2004), 1900-1902"Crystallization and Preliminary X-ray Crystallographic Study of Leucyl-tRNA Synthetase from theArchaeon Pyrococcus horikoshii "R. Fukunaga, S. Yokoyama
Acta Crystallographica Section D, 60, (2004), 1916-1918

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[7]

[8]

[9]

[10]

[11]

[12]

[13]

[14]

[15]

[16]

[17]

[18]

[19]

[20]

"Structural Basis of the Substrate-Specific Two-Step Catalysis of Long Chain Fatty Acyl-CoA
Synthetase Dimer"
Y. Hisanaga, H. Ago, N. Nakagawa, K. Hamada, K. Ida, M. Yamamoto, T. Hori, Y. Arii, M. Sugahara,
S. Kuramitsu, S. Yokoyama, M. Miyano
The Journal of Biological Chemistry, 279, (2004), 31717-31726"Crystallization and Preliminary Crystallographic Analysis of 2-keto-3-deoxygluconate Kinase from
Thermus thermophilus"
E. Inagaki, Y. Ukita, M. Kumei, Y. Kajihara, T. Tahirov
Acta Crystallographica Section D, 60, (2004), 761-763"Crystal Structure of the GTP-Binding Protein Obg from Thermus Thermophilus HB8"
M. Kukimoto-Niino, K. Murayama, M. Inoue, T. Terada, Jeremy R. H. Tame, S. Kuramitsu, M.
Shirouzu, S. Yokoyama
Journal of Molecular Biology, 337, (2004), 761-770"Crystal Structures of Possible Lysine Decarboxylases from Thermus thermophilus HB8"
M. Kukimoto-Niino, K. Murayama, M. Kato-Murayama, M. Idaka, Y. Bessho, A. Tatsuguchi, R.
Ushikoshi-Nakayama, T. Terada, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Protein Science, 13, (2004), 3038-3042"Purification, Crystallization and Preliminary Crystallographic Analysis of the Glycine-Cleavage
System Component T-protein from Pyrococcus horikoshii OT3"
N. Lokanath, C. Kuroishi, N. Okazaki, N. Kunishima
Acta Crystallographica Section D, 60, (2004), 1450-1452"Structure of Aldolase from Thermus thermophilus HB8 Showing the Contribution of Oligomeric State to
Thermostability"
N. Lokanath, I. Shiromizu, N. Ohshima, Y. Nodake, M. Sugahara, S. Yokoyama, S. Kuramitsu, M.
Miyano, N. Kunishima
Acta Crystallographica Section D, 60, (2004), 1816-1823"Structure of Thermus thermophilus 2-Keto-3-deoxygluconate Kinase: Evidence for Recognition of anOpen Chain Substrate"
N. Ohshima, E. Inagaki, K. Yasuike, K. Takio, T. Tahirov
Journal of Molecular Biology, 340, (2004), 477-489"Expression, Purification, Crystallization and Preliminary Crystallographic Analysis of Osmotically
Inducible Protein C"
P. Rehse, Y. Nodake, C. Kuroishi, T. Tahirov
Acta Crystallographica Section D, 60, (2004), 357-358"Crystallographic Structure and Biochemical Analysis of the Thermus thermophilus Osmotically
Inducible Protein C"
P. Rehse, N. Ohshima, Y. Nodake, T. Tahirov
Journal of Molecular Biology, 338, (2004), 959-968"Structure of the RNA-Processing Inhibitor RraA from Thermus thermophilis"
P. Rehse, C. Kuroishi, T. Tahirov
Acta Crystallographica Section D, 60, (2004), 1997-2002"Structure and Implications for the Thermal Stability of Phosphopantetheine Adenylyltransferase from
Thermus thermophilus"
H. Takahashi, E. Inagaki, Y. Fujimoto, C. Kuroishi, Y. Nodake, Y. Nakamura, F. Arisaka, K. Yutani, S.
Kuramitsu, S. Yokoyama, M. Yamamoto, M. Miyano, T. Tahirov
Acta Crystallographica Section D, 60, (2004), 97-104"Structure of the Thermus thermophilus Putative Periplasmic Glutamate/Glutamine-Binding Protein"
H. Takahashi, E. Inagaki, C. Kuroishi, T. Tahirov
Acta Crystallographica Section D, 60, (2004), 1846-1854"Structural Basis for Substrate Selection by T7 RNA Polymerase"
D. Temiakov, V. Patlan, M. Anikin, W. McAllister, S. Yokoyama, P. Vsevolod, D. Vassylyev
Cell, 116, (2004), 381-391"Sample Management System for a Vast amount of Frozen Crystals at SPring-8"
G. Ueno, R. Hirose, K. Ida, T. Kumasaka, M. Yamamoto
Journal of Applied Crystallography, 37, (2004), 867-873"Crystal Structure of the C-terminal Clock-Oscillator Domain of the Cyanobacterial KaiA Protein"
T. Uzumaki, M. Fujita, T. Nakatsu, F. Hayashi, H. Shibata, N. Ito, H. Kato, M. Ishiura
Nature Structural and Molecular Biology, 11, (2004), 623-631"Crystal Structure of Ribosomal Protein L27 from Thermus thermophilus HB8"
H. Wang, C. Takemoto, K. Murayama, H. Sakai, A. Tatsuguchi, T. Terada, M. Shirouzu, S. Kuramitsu,
S. Yokoyama
Protein Science, 13, (2004), 2806-2810

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[21]

[22]

[23]

[24]

RIKEN Beamlines

[25]

[26]

[27]

[28]

[29]

[30]

[31]

[32]

[33]

[34]

[35]

[36]

BL26B1[2005]"Crystal Structure of an Enhancer of Rudimentary Homologue (ERH) at 2.1 Å Resolution"
R. Arai, M. Kukimoto-Niino, H. Uda-Tochio, S. Morita, T. Uchikubo-Kamo, R. Akasaka, Y. Etou, Y.
Hayashizaki, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Protein Science, 14, (2005), 1888-1893"Stabilization Mechanism of the Tryptophan Synthase ǩ-Subunit from Thermus thermophilus HB8:
X-Ray Crystallographic Analysis and Calorimetry"
Y. Asada, M. Sawano, K. Ogasawara, J. Nakamura, M. Ota, C. Kuroishi, M. Sugahara, K. Yutani, N.
Kunishima
The Journal of Biochemistry, 138, (2005), 343-353"Purification, Crystallization and Preliminary Crystallographic Analysis of the Biotin-Protein Ligase
from Pyrococcus horikoshii OT3"
B. Bagautdin, C. Kuroishi, M. Sugahara, N. Kunishima
Acta Crystallographica Section F, 61, (2005), 193-195"Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes:
Structural Basis of Biotin Activation"
B. Bagautdinov, C. Kuroishi, M. Sugahara, N. Kunishima
Journal of Molecular Biology, 353, (2005), 322-333"Structure of Pyrococcus horikoshii NikR: Nickel Sensing and Implications for the Regulation of DNA
Recognition"
P. Chivers, T. Tahirov
Journal of Molecular Biology, 348, (2005), 597-607"Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a
Novel Editing Domain Orientation"
R. Fukunaga, S. Yokoyama
Journal of Molecular Biology, 346, (2005), 57-71
Leu"Crystallization of Leucyl-tRNA Synthetase Complexed with tRNA from the Archaeon Pyrococcus
horikoshii "R. Fukunaga, R. Ishitani, O. Nureki, S. Yokoyama
Acta Crystallographica Section F, 61, (2005), 30-32"Structural Basis for Non-Cognate Amino Acid Discrimination by the Valyl-tRNA Synthetase Editing
Domain"R. Fukunaga, S. Yokoyama
The Journal of Biological Chemistry, 280, (2005), 29937-29945
Leu"Aminoacylation Complex Structures of Leucyl-tRNA Synthetase and tRNA Reveal Two Modes ofDiscriminator-base Recognition"
R. Fukunaga, S. Yokoyama
Nature Structural and Molecular Biology, 12, (2005), 915-922"Crystal Structure of the Hypothetical Protein TTHA1013 from Thermus thermophilus HB8"
M. Hattori, E. Mizohata, M. Manzoku, Y. Bessyo, K. Murayama, T. Terada, S. Kuramitsu, M. Shiruozu,
S. Yokoyama
Proteins: Structure, Function, and Bioinformatics, 61, (2005), 1117-1120"Crystallization and Avoiding the Problem of Hemihedral Twinning in Crystals of
1∆ -pyrroline-5-carboxylate Dehydrogenase from Thermus thermophilus"
E. Inagaki, H. Takahashi, C. Kuroishi, T. Tahirov
Acta Crystallographica Section F, 61, (2005), 609-611"Crystal Structure of the tRNA 3' Processing Endoribonuclease tRNase Z from Thermotoga maritima"
R. Ishii, A. Minagawa, H. Takaku, M. Takagi, M. Nashimoto, S. Yokoyama
The Journal of Biological Chemistry, 280, (2005), 14138-14144"Structure of PIN-Domain Protein PH0500 from Pyrococcus horikoshi "J. Jeyaraman, E. Inagaki, C. Kuroishi, T. Tahirov
Acta Crystallographica Section F, 61, (2005), 463-468"Purification, Crystallization and Preliminary X-ray Crystallographic Study of the
L-fuculose-1-phosphate Aldolase (FucA) from Thermus thermophilus HB8"
J. Jeyaraman, J. Taka, A. Kikuchi, C. Kuroishi, K. Yutani, Y. Shiro
Acta Crystallographica Section F, 61, (2005), 1075-1077"Crystal Structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1"
M. Kato-Murayama, Y. Bessho, M. Shirouzu, S. Yokoyama
Journal of Molecular Biology, 348, (2005), 295-305"Crystallization and Preliminary Crystallographic Analysis of the Nickel-Responsive Regulator NikR
from Pyrococcus horikoshii "T. Kitao, C. Kuroishi, T. Tahirov
Acta Crystallographica Section F, 61, (2005), 43-45

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[39]

[40]

[41]

[42]

[43]

[44]

[45]

[46]

[47]

[48]

[49]

[50]

[51]

"Crystal Structure of a Predicted Phosphoribosyltransferase(TT1426) from Thermus thermophilus HB8
at 2.01 Å Resolution"
M. Kukimoto-Niino, R. Shibata, K. Murayama, H. Hamana, M. Nishimoto, Y. Bessho, T. Terada, M.
Shirouzu, S. Kuramitsu, S. Yokoyama
Protein Science, 14, (2005), 823-827"Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus"
M. Kuratani, R. Ishii, Y. Bessho, R. Fukunaga, T. Sengoku, M. Shirouzu, S. Sekine, S. Yokoyama
The Journal of Biological Chemistry, 280, (2005), 16002-16008"Purification, Crystallizaiton and Preliminary Crystallographic Analysis of the Vacuole-Type ATPase
Subunit E from Pyrococcus horikoshii OT3"
N. Lokanath, Y. Ukita, M. Sugahara, N. Kunishima
Acta Crystallographica Section F, 61, (2005), 56-58"Crystal Structure of a Component of Glycine Cleavage System: T-Protein from Pyrococcus horikoshii
OT3 at 1.5 Å Resolution"
N. Lokanath, C. Kuroishi, N. Okazaki, N. Kunishima
Proteins: Structure, Function, and Bioinformatics, 58, (2005), 769-773"Purification, Crystallization and Initial X-ray Crystallographic Analysis of the Putative GTPase
PH0525 from Pyrococcus horikoshii OT3"
Neratur K. Lokanath, H. Yamamoto, E. Matsunaga, M. Sugahara, N. Kunishima
Acta Crystallographica Section F, 61, (2005), 892-894"Crystal Structure of Novel NADP-dependent 3-Hydroxyisobutyrate Dehydrogenase from Thermus
thermophilus HB8"
N. Lokanath, N. Ohshima, K. Takio, I. Shiromizu, C. Kuroishi, N. Okazaki, S. Kuramitsu, S.
Yokoyama, M. Miyano, N. Kunishima
Journal of Molecular Biology, 352, (2005), 905-917"Crystal Structure of an Archaeal Peroxiredoxin from the Aerobic Hyperthermophilic Crenarchaeon
Aeropyrum pernix K1"
E. Mizohata, H. Sakai, E. Fusatomi, T. Terada, K. Murayama, M. Shirouzu, S. Yokoyama
Journal of Molecular Biology, 354, (2005), 317-329"Recent Progress of Structural Biology of tRNA Processing and Modification"
K. Nakanishi, O. Nureki
Molecular Cell, 19, (2005), 157-166"Structures of a Putative RNA 5-methyluridine Methyltransferase, Thermus thermophilus TTHA1280,
and Its Complex with S-adenosyl-L-homocysteine"
A. Pioszak, K. Murayama, N. Nakagawa, A. Ebihara, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Acta Crystallographica Section F, 61, (2005), 867-874"Crystal Structure of a Purine/Pyrimidine Phosphoribosyltransferase-Related Protein from Thermus
thermophilus HB8"
P. Rehse, T. Tahirov
Proteins: Structure, Function, and Bioinformatics, 61, (2005), 658-665"Structure of a Closed-Form Uroporphyrinogen-III C-methyltransferase from Thermus thermophilus"
P. Rehse, T. Kitao, T. Tahirov
Acta Crystallographica Section D, 61, (2005), 913-919"Crystallization and Preliminary X-ray Studies on the Reaction Center-Light-Harvesting 1 Core
Complex from Rhodopseudomonas viridis"
S. Saijo, T. Sato, T. Kumasaka, N. Tanaka, K. Harata, T. Odahara
Acta Crystallographica Section F, 61, (2005), 83-86"Crystallization and Structural Studies of the Reaction Center-Light Harvesting 1Core Complex form
Rhodopseudomonas Viridis"
S. Saijo
Docter Thesis (Tokyo Institute of Technology), (2005), 1-56
"Crystal Structure of Dehydroquinate Synthase from Thermus thermophilus HB8 Showing Functional
Importance of the Dimeric State"
M. Sugahara, Y. Nodake, M. Sugahara, N. Kunishima
Proteins: Structure, Function, and Bioinformatics, 58, (2005), 249-252"Structure of ATP-dependent Phoshoenolpyruvate Carboxykinase from Thermus thermophilus HB8Showing the Structural Basis of Induced Fit and Thermostability"
M. Sugahara, N. Ohshima, Y. Ukita, M. Sugahara, N. Kunishima
Acta Crystallographica Section D, 61, (2005), 1500-1507

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[52]

[53]

[54]

[55]

RIKEN Beamlines

[56]

[57]

[58]

[59]

[60]

[61]

[62]

[63]

[64]

[65]

[66]

BL26B1"Stabilization Due to Dimer Formation of Phosphoribosyl Anthranilate Isomerase from Thermus
thermophilus HB8: X-ray Analysis and DSC Experiments"
J. Taka, K. Ogasahara, J. Jeyaraman, N. Kunishima, C. Kuroishi, M. Sugahara, S. Yokoyama, K.
Yutani
The Journal of Biochemistry, 137, (2005), 569-578"Beamline Scheduling Software: Administration Software for Automatic Operation of the RIKEN
Structural Genomics Beamlines at SPring-8"
G. Ueno, H. Kanda, M. Yamamoto, T. Kumasaka
Journal of Synchrotron Radiation, 12, (2005), 380-384"Purification, Crystallization and Preliminary X-ray Diffraction Analysis of the Histone Chaperone cia1
from Fission Yeast"
T. Umehara, Y. Otta, K. Tsuganezawa, T. Matsumoto, A. Tanaka, M. Horikoshi, B. Padmanabhan, S.
Yokoyama
Acta Crystallographica Section F, 61, (2005), 971-973"Crystal Structure of M-Ras Reveals a GTP-bound "Off " State Conformation of Ras Family Small
GTPase"M. Ye, F. Shima, S. Muraoka, J. Liao, H. Okamoto, M. Yamamoto, A. Tamura, N. Yagi, T. Ueki, T.
Kataoka
The Journal of Biological Chemistry, 280, (2005), 31267-31275[2006]"Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from
Bacillus cereus"
H. Ago, M. Oda, M. Takahashi, H. Tsuge, S. Ochi, N. Katunuma, M. Miyano, J. Sakurai
The Journal of Biological Chemistry, 281, (2006), 16157-16167"Crystal Structure of the Probable Haloacid Dehalogenase PH0459 from Pyrococcus horikoshii OT3"
R. Arai, M. Kukimoto-Niino, C. Kuroishi, Y. Bessho, M. Shirouzu, S. Yokoyama
Protein Science, 15, (2006), 373-377"Structure of Human Ubiquitin-Conjugating Enzyme E2 G2 (UBE2G2/UBC7)"
R. Arai, S. Yoshikawa, K. Murayama, Y. Imai, R. Takahashi, M. Shirouzu, S. Yokoyama
Acta Crystallographica Section F, 62, (2006), 330-334"Purification, Crystallization and Preliminary Crystallographic Analysis of RecA Superfamily ATPase
PH0284 from Pyrococcus horikoshii OT3"
B. Bagautdinov, N. Kunishima
Acta Crystallographica Section F, 62, (2006), 412-414"Crystal Structure of the tRNA Pseudouridine Synthase TruA from Thermus thermophilus HB8"
X. Dong, Y. Bessho, R. Shibata, M. Nishimoto, M. Shirouzu, S. Kuramitsu, S. Yokoyama
RNA Biology, 3, (2006), 115-121"Structural Basis for Substrate Recognition by the Editing Domain of Isoleucyl-tRNA Synthetase"
R. Fukunaga, S. Yokoyama
Journal of Molecular Biology, 359, (2006), 901-912"Structure of the UNC5H2 Death Domain"
N. Handa, M. Kukimoto-Niino, R. Akasaka, K. Murayama, T. Terada, M. Inoue, T. Yabuki, M. Aoki, E.
Seki, T. Matsuda, E. Nunokawa, A. Tanaka, Y. Hayashizaki, T. Kigawa, M. Shirouzu, S. Yokoyama
Acta Crystallographica Section D, 62, (2006), 1502-1509"The Crystal Structure of Mouse Nup35 Reveals Atypical RNP Motifs and Novel Homodimerization of
the RRM Domain"
N. Handa, M. Kukimoto-Niino, R. Akasaka, S. Kishishita, K. Murayama, T. Terada, M. Inoue, T.
Kigawa, S. Kose, N. Imamoto, A. Tanaka, Y. Hayashizaki, M. Shirouzu, S. Yokoyama
Journal of Molecular Biology, 363, (2006), 114-124"Crystal Structure of the Single-domain Rhodanese Homologue TTHA0613 from Thermus thermophilus
HB8"
M. Hattori, E. Mizohata, A. Tatsuguchi, R. Shibata, S. Kishishita, K. Murayama, T. Terada, S.
Kuramitsu, M. Shirouzu, S. Yokoyama
Proteins: Structure, Function, and Bioinformatics, 64, (2006), 284-287"Expression, Purification, Crystallization and Preliminary X-ray Diffraction Analysis of Galactokinasefrom Pyrococcus horikoshii "E. Inagaki, K. Sakamoto, N. Obayashi, T. Terada, M. Shirouzu, Y. Bessho, C. Kuroishi, S. Kuramitsu,
A. Shinkai, S. Yokoyama
Acta Crystallographica Section F, 62, (2006), 169-171
1"Crystal Structure of Thermus thermophilus ∆ -pyrroline-5-carboxylate Dehydrogenase"
E. Inagaki, N. Ohshima, H. Takahashi, C. Kuroishi, S. Yokoyama, T. Tahirov
Journal of Molecular Biology, 362, (2006), 490-501

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[69]
[70]

[71]

[72]

[73]

[74]

[75]

[76]

[77]

[78]

[79]

[80]

[81]

[82]

"Crystal Structure of Alanyl-tRNA Synthetase Editing-Domain Homolog (PH0574) from a
Hyperthermophile, Pyrococcus horikoshii OT3 at 1.45 Å Resolution"
J. Ishijima, Y. Uchida, C. Kuroishi, C. Tsuzuki, N. Takahashi, N. Okazaki, K. Yutani, M. Miyano
Proteins: Structure, Function, and Bioinformatics, 62, (2006), 1133-1137"Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of theMetallo-Ǫ-lactamase Superfamily"
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
The Journal of Biochemistry, 140, (2006), 535-542"Crystal Structure of the Conserved Protein TTHA0727 from Thermus thermophilus HB8 at 1.9"Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase"
W. Iwasaki, S. Sekine, C. Kuroishi, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Journal of Molecular Biology, 360, (2006), 329-342"Crystal Structure of the RUN Domain of Rap2-interacting Protein x"
M. Kukimoto-Niino, T. Takagi, R. Akasaka, K. Murayama, T. Uchikubo-Kamo, T. Terada, M. Inoue, S.
Watanabe, A. Tanaka, Y. Hayashizaki, T. Kigawa, M. Shirouzu, S. Yokoyama
The Journal of Biological Chemistry, 281, (2006), 31843-31853"Purification, Crystallization and Preliminary X-ray Crystallographic Analysis of the Archaeal
Phosphoglycerate mutase PH0037 from Pyrococcus horikoshii OT3"
Neratur K. Lokanath, N. Kunishima
Acta Crystallographica Section F, 62, (2006), 788-790"Crystallization and Preliminary Crystallographic Studies of Human Indoleamine 2,3-dioxygenase"
S. Oda, H. Sugimoto, T. Yoshida, Y. Shiro
Acta Crystallographica Section F, 62, (2006), 221-223"Structural Basis for Defects of Keap1 Activity Provoked by Its Point Mutations in Lung Cancer"
B. Padmanabhan, K. Tong, T. Ohta, Y. Nakamura, M. Scharlock, M. Ohtsuji, M. Kang, A. Kobayashi,
S. Yokoyama, M. Yamamoto
Molecular Cell, 21, (2006), 689-700"Crystal Structure of Human Indoleamine 2,3-dioxygenase: Catalytic Mechanism of O 2 Incorporation
by a Heme-Containing Dioxygenase"
H. Sugimoto, S. Oda, T. Otsuki, T. Hino, T. Yoshida, Y. Shiro
Proceedings of the National Academy of Sciences of the United States of America, 103, (2006),
2611-2616"Development of Trichromatic Protein Crystallography and High-Throughput Beamlines at SPring-8"
M. Yamamotoᣣᧄ⚿᥏ቇળ⹹ (Journal of the Crystallographic Society of Japan), 48, (2006), 199-206"Crystallization and Preliminary X-ray Crystallographic Analysis of the Catalytic Domain of
Pyrrolysyl-tRNA Synthetase from the Methanogenic Archaeon Methanosarcina mazei "T. Yanagisawa, R. Ishii, R. Fukunaga, O. Nureki, S. Yokoyama
Acta Crystallographica Section F, 62, (2006), 1031-1033[2007]"Crystal Structure of Human myo-inositol Monophosphatase 2, the Product of the Putative
Susceptibility Gene for Bipolar Disorder, Schizophrenia, and Febrile Seizures"
R. Arai, K. Ito, T. Ohnishi, H. Ohba, R. Akasaka, Y. Bessho, K. Hanawa-Suetsugu, T. Yoshikawa, M.
Shirouzu, S. Yokoyama
Proteins: Structure, Function, and Bioinformatics, 67, (2007), 732-742"Purification, Crystallization and Preliminary Crystallographic Analysis of Archaeal 6-pyruvoyl
Tetrahydrobiopterin Synthase Homologue PH0634 from Pyrococcus horikoshii OT3"
B. Bagautdinov, M. Sugahara, N. Kunishima
Acta Crystallographica Section F, 63, (2007), 15-17"Crystal Structures of Shikimate Dehydrogenase AroE from Thermus thermophilus HB8 and its Cofactor
and Substrate Complexes: Insights into the Enzymatic Mechanism"
B. Bagautdinov, N. Kunishima
Journal of Molecular Biology, 373, (2007), 424-438"Crystallization and Preliminary X-ray Crystallographic Studies of the Biotin Carboxyl Carrier Protein
and Biotin Protein Ligase Complex from Pyrococcus horikoshii OT3"
B. Bagautdinov, Y. Matsuura, S. Bagautdinova, N. Kunishima
Acta Crystallographica Section F, 63, (2007), 334-337"Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation
Factors"
S. Connell, C. Takemoto, D. Wilson, H. Wang, K. Murayama, T. Terada, M. Shirouzu, M. Rost, M.
Schüler, J. Giesebrecht, D. Marylena, T. Mielke, P. Fucini, S. Yokoyama, C. Spahn
Molecular Cell, 25, (2007), 751-764

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[67]

[83]

[84]

[85]

[86]

[87]

RIKEN Beamlines

[88]

[89]

[90]

[91]

[92]

[93]

[94]

[95]

[96]

[97]

BL26B1"The 1.3 Å Crystal Structure of a Novel Endo-Ǫ-1,3-glucanase of Glycoside Hydrolase Family 16
from Alkaliphilic Nocardiposis sp. Strain F96"
G. Fibriansah, S. Masuda, N. Koizumi, S. Nakamura, T. Kumasaka
Proteins: Structure, Function, and Bioinformatics, 69, (2007), 683-690"Crystal Structure of Blasticidin S Deaminase (BSD) Implications for Dynamical Properties of Catalytic
Zinc"
T. Kumasaka, M. Yamamoto, M. Furuichi, M. Nakasako, A. Teh, M. Kimura, I. Yamaguchi, T. Ueki
The Journal of Biological Chemistry, 282, (2007), 37103-37111+"Dimeric Core Structure of Modular Stator Subunit E of Archaeal H -ATPase"
Neratur K. Lokanath, Y. Matsuura, C. Kuroishi, N. Takahashi, N. Kunishima
Journal of Molecular Biology, 366, (2007), 933-944"Purification, Crystallization and Preliminary X-ray Diffraction Studies of a Putative
UDP-N-acetyl-D-mannosamine Dehydrogenase from Pyrococcus horikoshii OT3"
Neratur K. Lokanath, K. Pampa, T. Kamiya, N. Kunishima
Acta Crystallographica Section F, 63, (2007), 412-414"Purification, Crystallization and Preliminary X-ray Analysis of the Fumarylacetoacetase Family
Member TTHA0809 from Thermus thermophilus HB8"
H. Mizutani, N. Kunishima
Acta Crystallographica Section F, 63, (2007), 792-794"Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome"Y. Nakamura, K. Nakano, T. Umehara, M. Kimura, Y. Hayashizaki, A. Tanaka, M. Horikoshi, B.
Padmanabhan, S. Yokoyama
Structure, 15, (2007), 179-189"Structural Basis for Regulation of Bifunctional Roles in Replication Initiator Protein"
A. Nakamura, C. Wada, K. Miki
Proceedings of the National Academy of Sciences of the United States of America, 104, (2007),
18484-18489"Crystal Structure and RNA-binding Analysis of the Archaeal Transcription Factor NusA"
R. Shibata, Y. Bessho, A. Shinkai, M. Nishimoto, E. Fusatomi, T. Terada, M. Shirouzu, S. Yokoyama
Biochemical and Biophysical Research Communications, 355, (2007), 122-128"Curved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane
Invagination in Endocytosis"
A. Shimada, H. Niwa, K. Tsujita, S. Suetsugu, K. Nitta, K. Suetsugu, R. Akasaka, Y. Nishino, M.
Toyama, L. Cheng, Z. Liu, B. Wang, M. Yamamoto, T. Terada, A. Miyazawa, A. Tanaka, S. Sugano,
M. Shirouzu, K. Nagayama, T. Takenawa, S. Yokoyama
Cell, 129, (2007), 761-772"Purification, Crystallization and Preliminary X-ray Diffraction Study on Pyrimidine Nucleoside
Phosphorylase TTHA1771 from Thermus thermophilus HB8"
K. Shimizu, N. Kunishima
Acta Crystallographica Section F, 63, (2007), 308-310"The Putative DNA-binding Protein Sto12a from the Thermoacidophilic Archaeon Sulfolobus tokodaii
Contains Intrachain and Interchain Disulfide Bonds"
A. Shinkai, S. Sekine, A. Urushibata, T. Terada, M. Shirouzu, S. Yokoyama
Journal of Molecular Biology, 372, (2007), 1293-1304"Purification, Crystallization and Preliminary Crystallographic Analysis of the PutativeThiamine-Biosynthesis Protein PH1313 from Pyrococcus horikoshii OT3"
M. Sugahara, S. Murai, M. Sugahara, N. Kunishima
Acta Crystallographica Section F, 63, (2007), 56-58"Purification, Crystallization and Preliminary X-ray Diffraction of the C-terminal Bromodomain from
Human BRD2"
T. Umehara, M. Wakamori, A. Tanaka, B. Padmanabhan, S. Yokoyama
Acta Crystallographica Section F, 63, (2007), 613-615"Structure of Archaeal Glyoxylate Reductase from Pyrococcus horikoshii OT3 Complexed with
Nicotinamide Adenine Dinucleotide Phosphate"
S. Yoshikawa, R. Arai, Y. Kinoshita, T. Uchikubo-Kamo, T. Wakamatsu, R. Akasaka, R. Masui, T.
Terada, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Acta Crystallographica Section D, 63, (2007), 357-365[2008]"Crystallization and Preliminary X-ray Crystallographic Analysis of Rabbit L-gulonate
3-dehydrogenase"
Y. Asada, C. Kuroishi, Y. Ukita, R. Sumii, S. Endo, T. Matsunaga, A. Hara, N. Kunishima
Acta Crystallographica Section F, 64, (2008), 228-230

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"Crystal Structure of the MarR Family Regulatory Protein, ST1710, from Sulfolobus tokodaii Strain 7"
T. Kumarevel, T. Tanaka, M. Nishio, S. Gopinath, K. Takio, A. Shinkai, P. Kumar, S. Yokoyama
Journal of Structural Biology, 161, (2008), 9-17
"Structures of Dimeric Nonstandard Nucleotide Triphosphate Pyrophosphatase from Pyrococcus
horikoshii OT3: Functional Significance of Interprotomer Conformational Changes"
Neratur K. Lokanath, Kudigana J. Pampa, K. Takio, N. Kunishima
Journal of Molecular Biology, 375, (2008), 1013-1025"Crystallization and Preliminary Crystallographic Studies of L30e, a Ribosomal Protein from
Methanocaldococcus jannaschii (MJ1044)"
S. Rangarajan, J. Jeyaraman, P. Mridula, K. Sakamoto, Y. Kitamura, Y. Agari, A. Shinkai, A. Ebihara,
S. Kuramitsu, S. Yokoyama, K. Sekar
Acta Crystallographica Section F, 64, (2008), 102-104"Crystallographic Studies on Multiple Conformational States of Active-Site Loops in Pyrrolysyl-tRNA
Synthetase"
T. Yanagisawa, R. Ishii, R. Fukunaga, T. Kobayashi, K. Sakamoto, S. Yokoyama
Journal of Molecular Biology, 378, (2008), 634-652

BL26B2
Refereed Journals
[1]

[2]

[3]

[4]

[5]

[6]

[7]

[8]

[9]

[10]

[2003]"Crystallization and Preliminary X-ray Studies of Xylanase 10B from Thermotoga maritima"
I. Iis, T. Kumasaka, T. Kaneko, C. Morokuma, S. Nakamura, N. Tanaka
Acta Crystallographica Section D, 59, (2003), 1659-1661[2004]"Structural Basis of Leukotriene B4 12-Hydroxydehydrogenase/15-Oxo-prostaglandin13-Reductase
Catalytic Mechanism and a Possible Src Homology 3 Domain Binding Loop"
T. Hori, Y. Takehiko, H. Ago, M. Sugahara, G. Ueno, M. Yamamoto, T. Kumasaka, T. Shimizu, M.
MiyanoThe Journal of Biological Chemistry, 279, (2004), 22615-22623"Crystallization and Preliminary X-ray Crystallographic Analysis of Chitinase F1 (ChiF1) from the
Alkaliphilic Nocardiopsis sp. strain F96"
T. Matsui, T. Kumasaka, K. Endo, T. Sato, S. Nakamura, N. Tanaka
Acta Crystallographica Section D, 60, (2004), 2016-2018"Crystallization and Preliminary X-ray Diffraction Studies of the Hyperthermophilic Archaeal
Sulredoxin Having the Unique Rieske [2Fe-2S] Cluster Environment"
T. Uchiyama, A. Kounosu, T. Sato, N. Tanaka, T. Iwasaki, T. Kumasaka
Acta Crystallographica Section D, 60, (2004), 1487-1489"Sample Management System for a Vast amount of Frozen Crystals at SPring-8"
G. Ueno, R. Hirose, K. Ida, T. Kumasaka, M. Yamamoto
Journal of Applied Crystallography, 37, (2004), 867-873"Crystal Structure of the C-terminal Clock-Oscillator Domain of the Cyanobacterial KaiA Protein"
T. Uzumaki, M. Fujita, T. Nakatsu, F. Hayashi, H. Shibata, N. Ito, H. Kato, M. Ishiura
Nature Structural and Molecular Biology, 11, (2004), 623-631[2005]"Structure of a Putative Trans-editing Enzyme for Prolyl-tRNA from Aeropyrum pernix K1 at 1.7 Å
Resolution"
K. Murayama, M. Kato-Murayama, K. Katsura, T. Uchikubo-Kamo, M. Yamaguchi-Hirafuji, M.
Kawazoe, R. Akasaka, K. Hanawa-Suetsugu, C. Hori-Takemoto, T. Terada, M. Shirouzu, S.
Yokoyama
Acta Crystallographica Section F, 61, (2005), 26-29"A Norovirus Protease Structure Provides Insights into Active and Substrate Binding Site Integrity"
K. Nakamura, Y. Someya, T. Kumasaka, G. Ueno, M. Yamamoto, T. Sato, N. Takeda, T. Miyamura,N. Tanaka
Journal of Virology, 79, (2005), 13685-13693"Compact Reduced Thioredoxin Structure from the Thermophilic Bacteria Thermus thermophilus"
P. Rehse, M. Kumei, T. Tahirov
Proteins: Structure, Function, and Bioinformatics, 61, (2005), 1032-1037"Beamline Scheduling Software: Administration Software for Automatic Operation of the RIKEN
Structural Genomics Beamlines at SPring-8"
G. Ueno, H. Kanda, M. Yamamoto, T. Kumasaka
Journal of Synchrotron Radiation, 12, (2005), 380-384

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