[46][2008]"State-sensitive Monitoring of Gold Nanoparticle Sites on Titania and the Interaction of the Positive Au
site with O2 by Au Lǩ1-selecting X-ray Absorption Fine Structure"
Y. Izumi, D. Obaid, K. Konishi, D. Masih, M. Takagaki, Y. Terada, H. Tanida, T. Uruga
Inorganica Chimica Acta, 361, (2008), 1149-1156"Observation of Arsenic Transfer in Leaf Tissue of Hyperaccumulator Fern by Utilizing Synchrotron
Radiation Micro-XRF Imaging"
N. Kitajima, T. Kasiwabara, N. Fukuda, S. Endou, A. Hokura, Y. Terada, I. Nakai
Chemistry Letters, 37, (2008), 32-33

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[2]

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[4]

[5]

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[2001]"Chemical Analysis for Fe in LiCoO2 by XAFS Analysis"
H. Ohzono, M. Kouno, H. Miyake, H. Ohyama
Analytical Sciences, 17.Supplement, (2001), i135-i137[2002]"Determinants of the Inhibition of a Taiwan Habu Venom Metalloproteinase by Its Endogenous
Inhibitors Revealed by X-ray Crystallography and Synthetic Inhibitor Analogues"
K. Huang, S. Chiou, T. Ko, Andrew H.-J. Wang
European Journal of Biochemistry, 269, (2002), 3047-3056"Relationship between the Li Ionic Conduction and the Local Structures in B-Site Substituted
Perovskite Compounds, (Li0.1La0.3)1+xMxNb1-xO3 (M=Zr, Ti; x=0, 0.05)"
M. Nakayama, H. Ikuta, Y. Uchimoto, M. Wakihara, Y. Terada
Applied Physics Letters, 81, (2002), 2977-2979"Local Structure around Mn in Ferromagnetic GaMnN Film Studied by X-Ray Absorption Fine
Structure"
M. Sato, H. Tanida, K. Kato, T. Sasaki, Y. Yamamoto, S. Sonoda, S. Shimizu, H. Hori
Japanese Journal of Applied Physics, 41, (2002), 4513-4514"Crystal Structure of the RuvA-RuvB Complex: A Structural Basis for the Holliday Junction Migrating
Motor Machinery"
K. Yamada, T. Miyata, D. Tsuchiya, T. Oyama, Y. Fujiwara, T. Ohnishi, H. Iwasaki, H. Shinagawa, M.
Ariyoshi, K. Mayanagi, K. Morikawa
Molecular Cell, 10, (2002), 671-681[2003]"YAP Imager and Its Application with High-Energy X-Ray Beams up to 150 keV"
K. Hirota, H. Toyokawa, M. Suzuki, T. Kubo, M. Nomachi, Y. Sugaya, M. Yosoi, A. Gorin, I. Manuilov,
A. Riazantsev, K. Kuroda
Nuclear Instruments and Methods in Physics Research Section A, 510, (2003), 83-91"A Fast Position Encoding System for a High-Energy X-Ray YAP Imager"
K. Hirota, H. Toyokawa, M. Suzuki, T. Kudo, M. Nomachi, Y. Sugaya, M. Yosoi
Nuclear Instruments and Methods in Physics Research Section A, 513, (2003), 187-192"Crystal Structure of Escherichia coli Thioesterase I/Protease I/Lysophospholipase L1: Consensus
Sequence Blocks Constitute the Catalytic Center of SGNH-hydrolases through a Conserved
Hydrogen Bond Network"
Y. Lo, S. Lin, J. Shaw, Y. Liaw
Journal of Molecular Biology, 330, (2003), 539-551"Structural and Electronic Investigation of TbPdAl by Means of EXAFS and XANES Measurements"
M. Mizumaki, K. Yoshii, H. Kitazawa, H. Tanida
Journal of Solid State Chemistry, 171, (2003), 291-294"Changes in Local Structure during Electrochemical Li Insetion into A-Site Deficient Perovskite
Oxides, La1/3NbO3"
M. Nakayama, H. Ikuta, Y. Uchimoto, M. Wakihara, Y. Terada, T. Miyanaga, I. Watanabe
The Journal of Physical Chemistry B, 107, (2003), 10715-10721"X-Ray and Biochemical Anatomy of an Archaeal XPF/RAD1/Mus81 Family Nuclease: Similarity
between Its Endonuclease Domain and Restriction Enzyme"
T. Nishino, K. Komori, Y. Ishino, K. Morikawa
Structure, 11, (2003), 445-457"Preparation and Crystallization of Human Flap Endonuclease FEN-1 in Complex with
Proliferating-Cell Nuclear Antigen, PCNA"
S. Sakurai, K. Kitano, K. Okada, K. Hamada, H. Morioka, T. Hakoshima
Acta Crystallographica Section D, 59, (2003), 933-935

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[28]

BL38B1"A 128-Channel Microstrip Germanium Detector for Compton Scattering Experiments at SPring-8
Facility"
M. Suzuki, H. Toyokawa, K. Hirota, M. Itou, M. Mizumaki, Y. Sakurai, N. Hiraoka, N. Sakai
Nuclear Instruments and Methods in Physics Research Section A, 510, (2003), 63-75"Crystallization and Preliminary Crystallographic Study of the Outer-Membrane Lipoprotein Receptor
LolB, a Member of the Lipoprotein Localization Factors"
K. Takeda, H. Miyatake, N. Yokota, S. Matsuyama, H. Tokuda, K. Miki
Acta Crystallographica Section D, 59, (2003), 1224-1226"Crystal Structures of Bacterial Lipoprotein Localization Factors, LolA and LolB"
K. Takeda, H. Miyatake, N. Yokota, S. Matsuyama, H. Tokuda, K. Miki
The EMBO Journal, 22, (2003), 3199-3209"A Practical Phasing Procedure using the MAD Method without the Aid of XAFS Measurements:
Successful Solution in the Structure Determination of the Outer-Membrane Lipoprotein Carrier LolA"
K. Takeda, H. Miyatake, N. Yokota, S. Matsuyama, H. Tokuda, K. Miki
Acta Crystallographica Section D, 59, (2003), 1440-1446"Structure, Magnetism and Transport of La2NiRuO6"
K. Yoshii, H. Abe, M. Mizumaki, H. Tanida, N. Kawamura
Journal of Alloys and Compounds, 348, (2003), 236-240"Catalytic Activity of Pd Loaded on WO3/Al2O3 for NO-CH4-O2 in the Presence of Water Vapor"
R. Yoshimoto, K. Okumura, M. Niwa
Catalysis Today, 84, (2003), 159-164[2004]
2+"Structural Basis for Ca -induced Activation of Human PAD4"
K. Arita, H. Hashimoto, T. Shimizu, K. Nakashima, M. Yamada, M. Sato
Nature Structural and Molecular Biology, 11, (2004), 777-783"Crystallization and Preliminary X-ray Crystallographic Study of the Editing Domain of Thermus
thermophilus Isoleucyl-tRNA Synthetase Complexed with Pre- and Post-Transfer Editing-Substrate
Analogues"
R. Fukunaga, S. Yokoyama
Acta Crystallographica Section D, 60, (2004), 1900-1902"The Valence State of Yb Metal under High Pressure Determined by XANES Measurement up to 34.6
GPa"
A. Fuse, G. Nakamoto, M. Kurisu, N. Ishimatsu, H. Tanida
Journal of Alloys and Compounds, 376, (2004), 34-37"Chitobiose Phosphorylase from Vibrio proteolyticus, a Member of Glycosyl Transferase Family 36,
Has a Clan GH-L-like (ǩ/ǩ)6 Barrel Fold"
M. Hidaka, Y. Honda, M. Kitaoka, S. Nirasawa, K. Hayashi, H. Shoun, T. Wakagi, S. Fushinobu
Structure, 12, (2004), 937-947"Structural Basis for Channelling Mechanism of a Fatty AcidǪ-Oxidation Multienzyme Complex"
M. Ishikawa, D. Tsuchiya, T. Oyama, Y. Tsunaka, K. Morikawa
The EMBO Journal, 23, (2004), 2745-2754"Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of
Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 Έ Resolution"
T. Itoh, S. Akao, W. Hashimoto, B. Mikami, K. Murata
The Journal of Biological Chemistry, 279, (2004), 31804-31812"Structure Analysis of PH1161 Protein, a Transcriptional Activator TenA Homologue from theHyperthermophilic Archaeon Pyrococcus horikoshii "H. Itou, M. Yao, N. Watanabe, I. Tanaka
Acta Crystallographica Section D, 60, (2004), 1094-1100"Crystal Structures and Electron Micrographs of Fungal Volvatoxin A2"
S. Lin, Y. Lo, J. Lin, Y. Liaw
Journal of Molecular Biology, 343, (2004), 477-491+"Crystallization and Preliminary X-ray Diffraction Study of the Catalytic Subunit of Archaeal H-transporting ATP Synthase from Pyrococcus horikoshii OT3"
Y. Maegawa, H. Morita, M. Yao, N. Watanabe, I. Tanaka
Acta Crystallographica Section D, 60, (2004), 1484-1486"Mutational and Structural Analysis of Cobalt-Containing Nitrile Hydratase on Substrate and Metal
Binding"
A. Miyanaga, S. Fushinobu, K. Ito, H. Shoun, T. Wakagi
European Journal of Biochemistry, 271, (2004), 429-438

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"Expression, Purification, Crystallization and Preliminary X-ray Analysis of ǩ- L-Arabinofuranosidase
B from Aspergillus kawachii "A. Miyanaga, T. Koseki, H. Matsuzawa, T. Wakagi, H. Shoun, S. Fushinobu
Acta Crystallographica Section D, 60, (2004), 1286-1288"Structural Insights into Substrate Specificity and Function of Glucodextranase"
M. Mizuno, T. Tonozuka, S. Suzuki, R. Uotsu-Tomita, S. Kamitori, A. Nishikawa, Y. Sakano
The Journal of Biological Chemistry, 279, (2004), 10575-10583"The N-Terminal Domain of the Replication Initiator Protein RepE is a Dimerization Domain Forming a
Stable Dimer"
A. Nakamiura, H. Komori, G. Kobayashi, A. Kita, C. Wada, K. Miki
Biochemical and Biophysical Research Communications, 315, (2004), 10-15"Crystallization and Preliminary X-ray Analysis of Escherichia coli MutT in Binary and Ternary Complex
Forms"
T. Nakamura, T. Doi, M. Sekiguchi, Y. Yamagata
Acta Crystallographica Section D, 60, (2004), 1641-1643"Development of a Portable Free-Air Ionization Chamber as an Absolute Intensity Monitor for
High-Energy Synchrotron Radiation up to 150 keV"N. Nariyama, N. Kishi, S. Ohnishi
Nuclear Instruments and Methods in Physics Research Section A, 524, (2004), 324-331"The Crystal Structure of Xanthine Oxidoreductase during Catalysis: Implications for Reaction
Mechanism and Enzyme Inhibition"
K. Okamoto, K. Matsumoto, B. Eger, E. Pai, R. Hille, T. Nishino
Proceedings of the National Academy of Sciences of the United States of America, 101, (2004),
7931-7936"Structural Evidence for Direct Hydride Transfer from NADH to Cytochrome P450nor"
R. Oshima, S. Fushinobu, F. Su, L. Zhang, N. Takaya, H. Shoun
Journal of Molecular Biology, 342, (2004), 207-217"Transparent Ferromagnetic Semiconductor Fe-Zn-O Heterogranular Films"
T. Shinagawa, M. Izaki, Y. Matsumura, K. Murase, Y. Awakura
Electrochemical and Solid-State Letters, 7, (2004), G235-G237"Chemical Speciation of Trace Zinc in Ordicary Portland Cement Using X-ray Absorption Fine
Structure Analysis"
I. Tsuyumoto, H. Uchikawa
Journal of the American Ceramic Society, 87, (2004), 2294-2296"Crystallization and Preliminary X-ray Diffraction Studies of the Hyperthermophilic Archaeal
Sulredoxin Having the Unique Rieske [2Fe-2S] Cluster Environment"
T. Uchiyama, A. Kounosu, T. Sato, N. Tanaka, T. Iwasaki, T. Kumasaka
Acta Crystallographica Section D, 60, (2004), 1487-1489"A Large-Area CMOS Imager as an X-ray Detector for Synchrotron Radiation Experiments"
N. Yagi, M. Yamamoto, K. Uesugi, K. Inoue
Journal of Synchrotron Radiation, 11, (2004), 347-352"Crystallographic Structures of Two Bisphosphonate: 1-Deoxyxylulose-5-Phosphate
Reductoisomerase Complexes"
S. Yajima, K. Hara, J. Sanders, F. Yin, K. Ohsawa, J. Wiesner, H. Jomaa, E. Oldfield
Journal of the American Chemical Society, 126, (2004), 10824-10825"Crystallization and Preliminary X-ray Analysis of Pyridoxal 4-Dehydrogenase, the Second Enzyme in
Degradation Pathway I of Pyridoxine"
N. Yokochi, Y. Yoshikane, Y. Yagi, B. Mikami
Acta Crystallographica Section D, D60, (2004), 2061-2062"Crystal Structure of Peptide Deformylase from Staphylococcus aureus in Complex with Actinonin, aNaturally Occurring Antibacterial Agent"
H. Yoon, H. Kim, S. Lee, H. Kim, J. Lee, B. Mikami, S. Se Won
Proteins: Structure, Function, and Bioinformatics, 57, (2004), 639-642"Neutron Diffraction and X-ray Absorption Study of CaMn0.6Ru0.4O3"
K. Yoshii, A. Nakamura, M. Mizumaki, H. Tanida, N. Kawamura, H. Abe, Y. Ishii, Y. Shimojo, Y. Morii
Journal of Magnetism and Magnetic Materials, 272-276, (2004), E609-E611[2005]"Crystallization and Preliminary X-ray Diffraction Study of BchU, a Methyltransferase from Chlorobium
tepidum Involved in Bacteriochlorophyll c Biosynthesis"
J. Harada, K. Wada, H. Yamaguchi, H. Oh-oka, H. Tamiaki, K. Fukuyama
Acta Crystallographica Section F, 61, (2005), 712-714

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[56]

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[59]

[60]

BL38B1"Crystallization of a 2:2 Complex of Granulocyte-Colony Stimulating Factor (GCSF) with the
Ligand-Binding Region of GCSF Receptor"
E. Honjo, T. Tamada, T. Koshiba, S. Mine, Y. Matsukura, Y. Maeda, T. Okamoto, M. Ishibashi, M.
Tokunaga, R. Kuroki
Acta Crystallographica Section F, 61, (2005), 788-790"XAFS Analyses of Zinc Compound in Corrosion Product for Magnesium Alloy of Super Plastic
Processing"
T. Honma, H. Mori, K. Higashi, H. Okado, K. Maehara, I. Hirosawa, N. Umesaki
Physica Scripta, T115, (2005), 567-569"The CGL2612 Protein from Corynebacterium glutamicum is a Drug Resistance-Related Transcriptional
Repressor: Structural and Functional Analysis of a Newly Identified Transcription Factor from
Genomic DNA Analysis"
H. Itoh, U. Okada, H. Suzuki, M. Yao, M. Wachi, N. Watanabe, I. Tanaka
The Journal of Biological Chemistry, 280, (2005), 38711-38719"Crystal Structure of a Human Kynurenine Aminotransferase II Homologue from Pyrococcus horikoshii
OT3 at 2.20 Å Resolution"
S. Kanaya, H. Chon, H. Matsumura, Y. Koga, K. Takano
Proteins: Structure, Function, and Bioinformatics, 61, (2005), 685-688"Crystal Structures of RsbQ, a Stress-Response Regulator in Bacillus subtilis"
T. Kaneko, N. Tanaka, T. Kumasaka
Protein Science, 14, (2005), 558-565"Structural Analysis of Threonine 342 Mutants of SoybeanǪ-Amylase: Role of a Conformational
Change of the Inner Loop in the Catalytic Mechanism"
Y. Kang, A. Tanabe, M. Adachi, S. Utsumi, B. Mikami
Biochemistry, 44, (2005), 5106-5116"Crystal Structure of Acid Blue and Alkaline Purple Forms of Bacteriorhodopsin"
T. Kouyama, H. Okumura, M. Murakami
Journal of Molecular Biology, 351, (2005), 481-495"Structual Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA
Polymerases"
T. Kuroita, H. Matsumura, N. Yokota, M. Kitabayashi, H. Hashimoto, T. Inoue, T. Imanaka, Y. Kai
Journal of Molecular Biology, 351, (2005), 291-298"Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the
Enzyme Reaction Mechanism"
Y. Maruyama, W. Hashimoto, B. Mikami, K. Murata
Journal of Molecular Biology, 350, (2005), 974-986"Structural Studies on a Human DEAD-box RNA Helicase, rck/p54"
T. Matsui
Doctor Thesis (Tokyo Institute of Technology), (2005), 1-82
"Structure of Aluminium-Bound Ovotransferrin at 2.15 Έ Resolution"
K. Mizutani, B. Mikami, S. Aibara, M. Hirose
Acta Crystallographica Section D, 61, (2005), 1636-1642"NDA-binding Mode and the Significance of Intersubunit Contact Revealed by the Crystal Structure of
Mycobacterium tuberculosis NDA Kinase-NDA Complex"
S. Mori, M. Yamasaki, Y. Maruyama, K. Momma, S. Kawai, W. Hashimoto, B. Mikami, K. Murata
Biochemical and Biophysical Research Communications, 327, (2005), 500-508"Conformational Dynamics of Complementary Determining Region H3 of an Anti-Dansyl Fv Fragmentin the Presence of Its Hapten"
M. Nakasako, T. Oka, M. Mashumo, H. Takahashi, I. Shimada, Y. Yamaguchi, K. Kato, Y. Arata
Journal of Molecular Biology, 351, (2005), 627-640"Responses of GafChromic Films for Distribution of Extremely High Doses from Synchrotron
Radiation"
N. Nariyama
Applied Radiation and Isotopes, 62, (2005), 693-697"Overexpression, Purification and Crystallization of an Archaeal DNA Ligase from Pyrococcus furiosus"
H. Nishida, D. Tsuchiya, Y. Ishino, K. Morikawa
Acta Crystallographica Section F, 61, (2005), 1100-1102"Crystal Structure and Functional Implications of Pyrococcus furiosus Hef Helicase Domain Involved in
Branched DNA Processing"T. Nishino, K. Komori, D. Tsuchiya, Y. Ishino, K. Morikawa
Structure, 13, (2005), 143-153

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"Mechanism of the Conversion of Xanthine Dehydrogenase to Xanthine Oxidase"
T. Nishino, K. Okamoto, T. Matsumura, Bryan T. Eger, Emil F. Pai, T. Nishino
The Journal of Biological Chemistry, 280, (2005), 24888-24894"Crystallization and Preliminary X-ray Crystallographic Analysis of Extracellular Giant Hemoglobinfrom Pogonophoran Oligobrachia mashikoi "N. Numoto, T. Nakagawa, A. Kita, Y. Sasayama, Y. Fukumori, K. Miki
Biochimica et Biophysica Acta - Proteins and Proteomics, 1750, (2005), 173-176"Structure of an Extracellular Giant Haemoglobin of the Gutless Beard Worm Oligobrachia mashikoi "N. Numoto, T. Nakagawa, A. Kita, Y. Sasayama, Y. Fukumori, K. Miki
Proceedings of the National Academy of Sciences of the United States of America, 102, (2005),
14521-14526"Crystal Structure of the Alginate (Poly ǩ-L-guluronate) Lyase from Corynebacterium sp. at 1.2 Å
Resolution"
T. Osawa, T. Muramatsu, M. Kimura, Y. Matsubara, Y. Kakuta
Journal of Molecular Biology, 345, (2005), 1111-1118"Structural Basis for Recruitment of Human Flap Endonuclease 1 to PCNA"
S. Sakurai, K. Kitano, H. Yamaguchi, K. Hamada, K. Okada, K. Fukuda, M. Uchida, E. Ohtsuka, H.
Morioka, T. Hakoshima
The EMBO Journal, 24, (2005), 683-693"Localized Morphometric Deformations of Small Airways and Alveoli in Intact Mouse Lungs under
Quasi-Static Inflation"
T. Sera, K. Uesugi, N. Yagi
Respiratory Physiology & Neurobiology, 147, (2005), 51-63"Refraction-Enhanced Tomography of Mouse and Rabbit Lungs"
T. Sera, K. Uesugi, N. Yagi
Medical Physics, 32, (2005), 2787-2792"Characterization of Transparent Ferromagnetic Fe:ZnO Semiconductor Films Chemically Preparedfrom Aqueous Solutions"T. Shinagawa, M. Izaki, H. Inui, K. Murase, Y. Awakura
Journal of the Electrochemical Society, 152, (2005), G736-G741"Crystal Structure of a Biologically Functional Form of PriB from Escherichia coli Reveals a Potential
Single-Stranded DNA-Binding Site"
S. Shioi, Y. Abe, T. Ose, K. Maenaka, M. Shiroishi, D. Kohda, T. Katayama, T. Ueda
Biochemical and Biophysical Research Communications, 326, (2005), 766-776
1"Crystallization of ∆ -tetrahydrocannabinolic Acid (THCA) Synthase from Cannabis sativa"
Y. Shoyama, A. Takeuchi, F. Taura, T. Tamada, M. Adachi, R. Kuroki, Y. Shoyama, S. Morimoto
Acta Crystallographica Section F, 61, (2005), 799-801"Molecular Basis of Alanine Discrimination in Editing Site"
M. Sokabe, A. Okada, M. Yao, T. Nakashima, I. Tanaka
Proceedings of the National Academy of Sciences of the United States of America, 102, (2005),
11669-11674"Structure of ATP-dependent Phoshoenolpyruvate Carboxykinase from Thermus thermophilus HB8Showing the Structural Basis of Induced Fit and Thermostability"
M. Sugahara, N. Ohshima, Y. Ukita, M. Sugahara, N. Kunishima
Acta Crystallographica Section D, 61, (2005), 1500-1507
2+"Identification of Single Mn Binding Sites in the Mutant Proteins of E. coli RNase HI at Glu48 and/or
Asp134 by X-ray Crystallography"
Y. Tsunaka, K. Takano, H. Matsumura, Y. Yamagata, S. Kanaya
Journal of Molecular Biology, 345, (2005), 1171-1183"Crystallization and Preliminary X-ray Analysis of Alginate Lyases A1- II and A1- II' from Sphingomonas
sp.A1"
M. Yamasaki, K. Ogura, S. Moriwaki, W. Hashimoto, K. Murata, B. Mikami
Acta Crystallographica Section F, 61, (2005), 288-290[2006]"Crystal Structure and Structure-based Mutational Analyses of RNase HIII from Bacillus
stearothermophilus: A New Type 2 RNase H with TBP-like Substrate-binding Domain at the N
Terminus"
H. Chon, H. Matsumura, Y. Koga, K. Takano, S. Kanaya
Journal of Molecular Biology, 356, (2006), 165-178"Induced-fitting and Electrostatic Potential Change of PcyA upon Substrate Binding Demonstrated by
the Crystal Structure of the Substrate-free Form"
Y. Hagiwara, M. Sugishima, Y. Takahashi, K. Fukuyama
FEBS Letters, 580, (2006), 3823-3828

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BL38B1"Structure Basis for Antitumor Effect of Aplyronine A"
K. Hirata, S. Muraoka, K. Suenaga, T. Kuroda, K. Kato, H. Tanaka, M. Yamamoto, M. Takata, K.
Yamada, H. Kigoshi
Journal of Molecular Biology, 356, (2006), 945-954"D-3-Hydroxybutyrate Dehydrogenase from Pseudomonas fragi: Molecular Cloning of the Enzyme
Gene and Crystal Structure of the Enzyme"
K. Ito, Y. Nakajima, E. Ichihara, K. Ogawa, N. Katayama, K. Nakashima, T. Yoshimoto
Journal of Molecular Biology, 355, (2006), 722-733"Substrate Recognition by Unsaturated Glucuronyl Hydrolase from Bacillus sp. GL1"
T. Itoh, W. Hashimoto, B. Mikami, K. Murata
Biochemical and Biophysical Research Communications, 344, (2006), 253-262"A Novel Glycoside Hydrolase Family 105: The Structure of Family 105 Unsaturated
Rhamnogalacturonyl Hydrolase Complexed with a Disaccharide in Comparison with Family 88
Enzyme Complexed with the Disaccharide"
T. Itoh, A. Ochiai, B. Mikami, W. Hashimoto, K. Murata
Journal of Molecular Biology, 360, (2006), 573-585"Structure of Unsaturated Rhamnogalacturonyl Hydrolase Complexed with Substrate"
T. Itoh, A. Ochiai, B. Mikami, W. Hashimoto, K. Murata
Biochemical and Biophysical Research Communications, 347, (2006), 1021-1029"Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: Molecular
Insights into Its Catalytic Reaction Mechanism"
T. Itoh, W. Hashimoto, B. Mikami, K. Murata
The Journal of Biological Chemistry, 281, (2006), 29807-29816"Crystallization and preliminary X-ray analysis of the complex of NADH and 3ǩ-hydroxysteroid
Dehydrogenase from Pseudomonas sp. B-0831"
S. Kataoka, S. Nakamura, T. Ohkubo, S. Uchiyama, Y. Kobayashi, M. Oda
Acta Crystallographica Section F, 62, (2006), 569-571"Probing, Inhibition, and Crystallographic Characterization of Metallo-Ǫ-lactamase (IMP-1) with
Fluorescent Agents Containing Dansyl and Thiol Groups"
H. Kurosaki, Y. Yamaguchi, H. Yasuzawa, W. Jin, Y. Yamagata, Y. Arakawa
ChemMedChem, 1, (2006), 969-972"Overexpression, Purification and Preliminary X-ray Analysis of Pullulanase from Bacillus subtilis
Strain 168"
D. Malle, T. Itoh, W. Hashimoto, K. Murata, S. Utsumi, B. Mikami
Acta Crystallographica Section F, 62, (2006), 381-384"Purification, Crystallization and Preliminary X-ray Diffraction Studies of UDP-N-acetylglucosamine
Pyrophosphorylase from Candida albicans"
D. Maruyama, Y. Nishitani, T. Nonaka, A. Kita, T. Fukami, T. Mio, H. Yamada-Okabe, T.
Yamada-Okabe, K. Miki
Acta Crystallographica Section F, 62, (2006), 1206-1208"Endophilin BAR Domain Drives Membrane Curvature by Two Newly Identified Structure-based
Mechanism"
M. Masuda, S. Takeda, M. Sone, T. Ohki, H. Mori, Y. Kamioka, N. Mochizuki
The EMBO Journal, 25, (2006), 2889-2897"Apo- and Holo-structures of 3ǩ-Hydroxysteroid Dehydrogenase from Pseudomonas sp. B-0831:
Loop-Helix Transition Induced by Coenzyme Binding"
S. Nakamura, M. Oda, S. Kataoka, S. Ueda, S. Uchiyama, T. Yoshida, Y. Kobayashi, T. Ohkubo
The Journal of Biological Chemistry, 281, (2006), 31876-31884"Crystal Structure of Thioredoxin Peroxidase from Aerobic Hyperthermophilic Archaeon Aeropyrum
pernix K1"
T. Nakamura, T. Yamamoto, T. Inoue, H. Matsumura, A. Kobayashi, Y. Hagihara, K. Uegaki, M.
Ataka, Y. Kai, K. Ishikawa
Proteins: Structure, Function, and Bioinformatics, 62, (2006), 822-826"Crystallization and Preliminary X-ray Analysis of Human MTH1 Complexed with Two Oxidized
Nucleotides, 8-oxo-dGMP and 2-oxo-dATP"
T. Nakamura, Y. Kitaguchi, M. Miyazawa, H. Kamiya, S. Toma, S. Ikemizu, M. Shirakawa, Y.
Nakabeppu, Y. Yamagata
Acta Crystallographica Section F, 62, (2006), 1283-1285"Ion Recombination in Parallel-Plate Free-Air Ionization Chambers for Synchrotron Radiation"
N. Nariyama
Physics in Medicine and Biology, 51, (2006), 5199-5209

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"Crystallization and Preliminary X-ray Analysis of the tRNA Thiolation Enzyme MnmA from Escherichia
Glucoli Complexed with tRNA "T. Numata, Y. Ikeuchi, S. Fukai, H. Adachi, H. Matsumura, K. Takano, S. Murakami, T. Inoue, Y. Mori,
T. Sasaki, T. Suzuki, O. Nureki
Acta Crystallographica Section F, 42, (2006), 368-371"Crystallization and Preliminary X-ray Analysis of an Exotype Alginate lyase Atu3025 from
Agrobacterium tumefaciens Strain C58, a Member of Polysaccharide Lyase Family 15"
A. Ochiai, M. Yamasaki, W. Hashimoto, B. Mikami, K. Murata
Acta Crystallographica Section F, 62, (2006), 486-488"Crystallization and Preliminary X-ray Analysis of the Complex of NADH and 3ǩ-hydroxysteroid
Dehydrogenase from Pseudomonas sp. B-0831"
M. Oda, S. Kataoka, S. Nakamura, T. Ohkubo, S. Ueda, S. Uchiyama, Y. Kobayashi
Acta Crystallographica Section F, 62, (2006), 569-571"Crystallization and Preliminary Crystallographic Analysis of the N-terminal Domain of PriA from
Escherichia coli "K. Sasaki, T. Ose, K. Maenaka, T. Tanaka, T. Mizukoshi, T. Ishigaki, H. Masai, D. Kohda
Biochimica et Biophysica Acta - Protein and Proteomics, 1764, (2006), 157-160"Structural Basis for Histone N-terminal Recognition by Human Peptidylarginine Deiminase 4"
M. Sato, K. Arita, T. Shimizu, H. Hashimoto, Y. Hidaka, M. Yamada
Proceedings of the National Academy of Sciences of the United States of America, 103, (2006),
5291-5296"Thermal Phase Transformation of ZnO-Based Transparent Ferromagnetic Composite Films and theChange in Magnetic Characteristics"
T. Shinagawa, M. Izaki, Y. Matsumura, T. Uruga, T. Nakamura, K. Murase, Y. Awakura
Journal of the Electrochemical Society, 153, (2006), G168-G174"Crystal Structure of the Human Monocyte-Activating Receptor, "Group 2" Leukocyte Ig-like Receptor
A5 (LILRA5/LIR9/ILT11)"
M. Shiroishi, M. Kajikawa, K. Kuroki, T. Ose, D. Kohda, K. Maenaka
The Journal of Biological Chemistry, 281, (2006), 19536-19544"Efficient Leukocyte Ig-like Receptor Signaling and Crystal Structure of Disulfide-linked HLA-G Dimer"
M. Shiroishi, I. Shiratori, K. Kuroki, T. Ose, L. Rasubala, D. Kohda, H. Arase, K. Tsumoto, I. Kumagai,
K. Maenaka
The Journal of Biological Chemistry, 281, (2006), 10439-10447"Preparation and Crystallization of the Disulfide-Linked HLA-G Dimer"
M. Shiroishi, D. Kohda, K. Maenaka
Biochimica et Biophysica Acta - Protein and Proteomics, 1764, (2006), 985-988"Application of X-ray Absorption Near-Edge Structure (XANES) using Bent Crystal Analyzer toSpeciation of Trace Os in Iron Meteorites"
Y. Takahashi, T. Uruga, H. Tanida, Y. Terada, S. Nakai, H. Shimizu
Analytica Chimica Acta, 558, (2006), 332-336"Homodimeric Cross-Over Structure of the Human Granulocyte Colony-Stimulating Factor (GCSF)
Receptor Signaling Complex"
T. Tamada, E. Honjo, Y. Maeda, T. Okamoto, M. Ishibashi, M. Tokunaga, R. Kuroki
Proceedings of the National Academy of Sciences of the United States of America, 108, (2006),
3135-3140"Self-assembled Octameric Cage Constructed by the Potassium Salt of p-tert-butylcalix[6]arene
p-bromophenylalanine Derivative in the Solid State"
K. Tsukamoto, H. Ohishi, Y. Hiyama, N. Maezaki, T. Tanaka, T. Ishida
Chemical Communications, (2006), 3606-3608"The Crystal Structure of L-lactate Oxidase from Aerococcus viridans at 2.1 Å Resolution Reveals the
Mechanism of Strict Substrate Recognition"
Y. Umena, K. Yorita, T. Matsuoka, A. Kita, K. Fukui, Y. Morimoto
Biochemical and Biophysical Research Communications, 350, (2006), 249-256"Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and
its Complex with S-adenosylhomocysteine: Implications fro Reaction Mechanism"
K. Wada, H. Yamaguchi, J. Harada, K. Niimi, S. Osumi, Y. Saga, H. Oh-oka, H. Tamiaki, K.
Fukuyama
Journal of Molecular Biology, 360, (2006), 839-849"XAFS Analysis of Molten Rare-Earth-Alkali Metal Fluoride Systems"
S. Watanabe, A. Adya, Y. Okamoto, N. Umesaki, T. Honma, H. Deguchi, M. Horiuchi, T. Yamamoto,
S. Noguchi, K. Takase, A. Kajinami, T. Sakamoto, M. Hatcho, N. Kitamura, H. Akatsuka, H. Matsuura
Journal of Alloys and Compounds, 408-412, (2006), 71-75

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BL38B1"Local Structural Analyses on Divalent or Trivalent Metal Fluoride Systems at High Temperature"
S. Watanabe
Doctor Thesis (Tokyo Institute of Technology), (2006), 1-183"Crystallization and Preliminary X-ray Crystallographic Studies of Oxidative Stress Sensor SoxR and
Its Complex with DNA"
S. Watanabe, A. Kita, K. Kobayashi, Y. Takahashi, K. Miki
Acta Crystallographica Section F, 62, (2006), 1275-1277"Crystal Structure of TBP-interacting Protein(Tk-TIP26) and Implications for Its Inhibition Mechanismof the Interaction between TBP and TATA-DNA"
T. Yamamoto, T. Inoue, H. Matsumura, T. Matsuda, S. Kanaya, M. Morikawa, Y. Kai
Protein Science, 15, (2006), 152-161"Strong Inhibition Effect of Sulfur Impurities in Alumina Supports on the Catalytic Activity of Rh in the
CH4-CO2 Reforming Reaction"
S. Yokota, K. Okumura, M. Niwa
Applied Catalysis A: General, 310, (2006), 122-126[2007]"Crystallization and Preliminary X-ray Crystallographic Study of [NiFe] Hydrogenase Maturation
Factor HypE from Thermococcus kodakaraensis KOD1"
T. Arai, S. Watanabe, R. Matsumi, H. Atomi, T. Imanaka, K. Miki
Acta Crystallographica Section F, 63, (2007), 765-767"Conformational Contagion in a Protein: Structural Properties of a Chameleon Sequence"
S. Kanaya, K. Takano, Y. Katagiri, A. Mukaiyama, H. Chon, H. Matsumura, Y. Koga
Proteins: Structure, Function, and Bioinformatics, 68, (2007), 617-625"Crystallization and Preliminary X-ray Diffraction Study of Glycerol Kinase from the Hyperthermophilic
Archaeon Thermococcus kodakaraensis"
R. Katsumi, Y. Koga, D. You, K. Takano, H. Matsumura, S. Kanaya
Acta Crystallographica Section F, 63, (2007), 126-129"Crystal Structures Reveal a Thiol Protease-like Catalytic Triad in the C-Terminal Region of
Pasteurella multocida Toxin"
K. Kitadokoro, M. Miyazawa, S. Kamitani, M. Hanajima-Ozawa, A. Fukui, M. Miyake, Y. Horiguchi
Proceedings of the National Academy of Sciences of the United States of America, 104, (2007),
5139-5144"Crystal Structure of the HRDC Domein of Human Werner Syndrome Protein, WRN"
K. Kitano, N. Yoshihara, T. Hakoshima
The Journal of Biological Chemistry, 282, (2007), 2717-2728"Feedback System for Improving the Performance of Extended X-ray Absorption Fine Structure
Measurements"
T. Kudo, H. Tanida
Review of Scientific Instruments, 78, (2007), 0033104"Crystallographic Study on the Interaction of L-lactate Oxidase with Pyruvate at 1.9 Å Resolution"
S. Li, Y. Umena, K. Yorita, T. Matsuoka, A. Kita, K. Fukui, Y. Morimoto
Biochemical and Biophysical Research Communications, 358, (2007), 1002-1007"Crystal Structures of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida
albicans and Catalytic Reaction Mechanism"
D. Maruyama, Y. Nishitani, T. Nonaka, A. Kita, T. Fukami, T. Mio, H. Yamada-Okabe, T.
Yamada-Okabe, K. Miki
The Journal of Biological Chemistry, 282, (2007), 17221-17230"Crystallographic Characterization of the Radixin FERM Domain Bound to the Cytoplasmic Tail of
Adhesion Molecule CD44"
T. Mori, K. Kitano, S. Terawaki, R. Maesaki, T. Hakoshima
Acta Crystallographica Section F, 63, (2007), 844-847"Crystallization and Preliminary Crystallographic Study of DNA Polymerase from Pyrococcus furiosus"
H. Nishida, M. Tanabe, T. Oyama, K. Morikawa
Protein and Peptide Letters, 14, (2007), 403-405"Crystal Structures of Human MD-2 and Its Complex with Antiendotoxic Lipid IVa"
U. Ohto, K. Fukase, K. Miyake, Y. Satow
Science, 316, (2007), 1632-1634"Crystal Structure of the ǫ-Glutamyltranspeptidase Precursor Protein from Eschericia coli
STRUCTURAL CHANGES UPON AUTOCATALYTIC PROCESSING AND IMPLICATIONS FOR THE
MATURATION MECHANISM "T. Okada, H. Suzuki, K. Wada, H. Kumagai, K. Fukuyama
The Journal of Biological Chemistry, 282, (2007), 2433-2439

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"Crystal Structure and Functional Characterization of a D-Stereospecific Amino Acid Amidase from
Ochrobactrum anthropi SV3, a New Member of the Penicillin-recognizing Proteins"
S. Okazaki, Y. Asano, A. Suzuki, H. Komeda, S. Yamaguchi, T. Yamane
Journal of Molecular Biology, 368, (2007), 79-91"Structural Basis of the 3'-end Recognition of a Leading Strand in Stalled Replication Forks by PriA"
K. Sasaki, T. Ose, N. Okamoto, K. Maenaka, T. Tanaka, H. Masai, M. Saito, T. Shirai, D. Kohda
The EMBO Journal, 26, (2007), 2584-2593"Preparation, Crystallization and Preliminary Crystallographic Analysis of Old Yellow Enzyme from
Trypanosoma cruzi "S. Sugiyama, K. Tokuoka, N. Okamoto, H. Matsumura, N. Uchiyama, Y. Okano, Y. Urade, K. Inaka, T.
Inoue
Acta Crystallographica Section F, 63, (2007), 896-898"An Atomic Level Study of Rhenium and Radiogenic Osmium in Molybdenite"
Y. Takahashi, H. Tanida, T. Uruga, Y. Terada, K. Suzuki
Geochimica et Cosmochimica Acta, 71, (2007), 5180-5190"Crystal Structures of CbiL, a Methyltransferase Involved in Vitamin B 12 Biosynthesis, and CbiL in
Complex with S-adenosylhomocysteine - Implications for the Reaction Mechanism"
K. Wada, J. Harada, Y. Yaeda, H. Tamiaki, H. Oh-oka, K. Fukuyama
The FEBS Journal, 274, (2007), 563-573"Crystal Structures of [NiFe] Hydrogenase Maturation Proteins, HypC, HypD and HypE: Insights into
Cyanation Reaction by Thiol Redox Signaling"
S. Watanabe, R. Matsumi, T. Arai, H. Atomi, T. Imanaka, K. Miki
Molecular Cell, 27, (2007), 29-40""Crystal Lattice Engineering" an Approach to Engineer Protein Crystal Contacts by Creating
Intermolecular Symmetry: Crystallization and Structure Determination of a Mutant Human RNase 1
with a Hydrophobic Interface of Leucines"
H. Yamada, T. Tamada, M. Kosaka, K. Miyata, S. Fujiki, M. Tanou, M. Moriya, M. Yamanishi, E.
Honjo, H. Murata, T. Ino, H. Yamaguchi, J. Futami, M. Seno, T. Nomoto, T. Hirata, M. Yoshimura, R.
KurokiProtein Science, 16, (2007), 1389-1397"Crystal Structure of Type 1 Ribonuclease H from Hyperthermophilic Archaeon Sulfolobus tokodaii:
Role of Arginine 118 and C-terminal Anchoring"
D. You, H. Chon, Y. Koga, K. Takano, S. Kanaya
Biochemistry, 46, (2007), 11494-11503[2008]+"Structure and Quantum Chemical Analysis of NAD -Dependent Isocitrate Dehydrogenase : Hydride
Transfer and Co-factor Specificity"
K. Imada, T. Tamura, R. Takenaka, I. Kobayashi, K. Namba, K. Inagaki
Proteins: Structure, Function, and Bioinformatics, 70, (2008), 63-71"Novel Cation-ǸInteraction Revealed by Crystal Structure of Thermoalkalophilic Lipase"
H. Matsumura, T. Inoue, T. Yamamoto, T. Leow, T. Mori, A. Salleh, Y. Kai, R. Rahman
Proteins: Structure, Function, and Bioinformatics, 70, (2008), 592-598"Crystal Structures of D-amino Acid Amidase Complexed with L-phenylalanine and L-phenylalanine
Amide: Insight into D-stereospecificity of D-amino Acid Amidase from Ochrobactrum anthropi SV3"
S. Okazaki, A. Suzuki, T. Mizushima, H. Komeda, Y. Asano, T. Yamane
Acta Crystallographica Section D, 64, (2008), 331-334"Crystal Structure of 5-methylthioribose 1-phosphate Isomerase Product Complex from Bacillus
Subtilis: Implications for Catalytic Mechanism"
H. Tamura, T. Inoue, Y. Saito, Y. Kai, H. Ashida, A. Yokota, H. Matsumura
Protein Science, 17, (2008), 126-135

BL39XU
Refereed Journals
[1]

[2]

[3]

[1998]"X-Ray Microprobe System for XRF Analysis and Spectroscopy at SPring-8 BL39XU"
S. Hayakawa, S. Goto, T. Shoji, E. Yamada, Y. Gohshi
Journal of Synchrotron Radiation, 5, (1998), 1114-1116"Atomic-Resolution X-Ray Fluorescence Holography of Zn(0.02wt%) in a GaAs Wafer"
K. Hayashi, T. Yamamoto, J. Kawai, M. Suzuki, S. Goto, S. Hayakawa, K. Sakurai, Y. Gohshi
Analytical Sciences, 14, (1998), 987-990"A Grazing-Incidence Reflectometer for BL-39XU at SPring-8"
K. Sakurai, S. Uehara, S. Goto
Journal of Synchrotron Radiation, 5, (1998), 554-556

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