Select Publications
Amaryllis Nucleics Technology•

Drobnitch ST, Comas LH, Flynn N, Ibarra Caballero J, Barton RW, et al.
(2021). Drought-Induced Root Pressure in Sorghum bicolor. Front Plant
Sci 12: 571072.

•Boehme JT, Morris CJ, Chiacchia SR, Gong W, Wu KY, et al. (2021).
HIF-1α promotes cellular growth in lymphatic endothelial cells exposed
to chronically elevated pulmonary lymph flow. Sci Rep 11(1): 1468.

•Chodasiewicz M, Sokolowska EM, Nelson-Dittrich AC, Masiuk A, Beltran
JCM, et al. (2020). Identification and Characterization of the HeatInduced Plastidial Stress Granules Reveal New Insight Into Arabidopsis
Stress Response. Front Plant Sci 11: 595792.

•Dew-Budd K, Cheung J, Palos K, Forsythe ES, Beilstein MA (2020).
Evolutionary and biochemical analyses reveal conservation of theBrassicaceae telomerase ribonucleoprotein complex. PLoS One 15(4):e0222687.

•Li C, Nozue K, Maloof JN (2020). MYCs and PIFs Act Independently inArabidopsis Growth Regulation. G3 (Bethesda).

•Traubenik S, Blanco F, Zanetti ME, Reynoso MA (2020). TRAP-SEQ ofEukaryotic Translatomes Applied to the Detection of PolysomeAssociated Long Noncoding RNAs. Methods Mol Biol 2166: 451-472.

•Shi Y, Hung ST, Rocha G, Lin S, Linares GR, et al. (2019). Identificationand therapeutic rescue of autophagosome and glutamate receptor
defects in C9ORF72 and sporadic ALS neurons. JCI Insight 5.

•Babos KN, Galloway KE, Kisler K, Zitting M, Li Y, et al. (2019). Mitigating
Antagonism between Transcription and Proliferation Allows NearDeterministic Cellular Reprogramming. Cell Stem Cell 25(4): 486500.e9.

•Jiang J, Zeng L, Ke H, De La Cruz B, Dehesh K (2019). Orthogonal
regulation of phytochrome B abundance by stress-specific plastidial
retrograde signaling metabolite. Nat Commun 10(1): 2904.

•Ito T, Nishio H, Tarutani Y, Emura N, Honjo MN, et al. (2019). Seasonal
Stability and Dynamics of DNA Methylation in Plants in a Natural
Environment. Genes (Basel) 10(7).

•Warren JG, Mercado J, Grace D (2019). Occurrence of Hop Latent ViroidCausing Disease in Cannabis sativa in California. Plant Disease 103(10):2699.

•Wu J, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, et al. (2019). Abscisic
acid-dependent histone demethylation during postgermination growtharrest in Arabidopsis. Plant Cell Environ 42(7): 2198-2214.

•Amini H, Naghavi MR, Shen T, Wang Y, Nasiri J, et al. (2019). TissueSpecific Transcriptome Analysis Reveals Candidate Genes for Terpenoid
and Phenylpropanoid Metabolism in the Medicinal Plant Ferulaassafoetida. G3 (Bethesda) 9(3): 807-816.

•Bellmann J, Monette A, Tripathy V, Sójka A, Abo-Rady M, et al. (2019).
Viral Infections Exacerbate FUS-ALS Phenotypes in iPSC-Derived Spinal
Neurons in a Virus Species-Specific Manner. Front Cell Neurosci 13: 480.

•Motomura K, Arae T, Uramoto HA, Suzuki Y, Takeuchi H, et al. (2019).
AtNOT1 is a novel regulator of gene expression during pollen
development. Plant Cell Physiol.

•Hinckley WE, Keymanesh K, Cordova JA, Brusslan JA (2019). The HAC1
histone acetyltransferase promotes leaf senescence and regulates theexpression of ERF022. Plant Direct 3(8): e00159.

•Gaudinier A, Rodriguez-Medina J, Zhang L, Olson A, Liseron-Monfils C,
et al. (2018). Transcriptional regulation of nitrogen-associatedmetabolism and growth. Nature 563(7730): 259-264.

•Ichihashi Y, Kusano M, Kobayashi M, Suetsugu K, Yoshida S, et al.
(2018). Transcriptomic and Metabolomic Reprogramming from Roots toHaustoria in the Parasitic Plant, Thesium chinense. Plant Cell Physiol
59(4): 724-733.

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Kim JS, Yamaguchi-Shinozaki K, Shinozaki K (2018). ER-AnchoredTranscription Factors bZIP17 and bZIP28 Regulate Root Elongation.
Plant Physiol 176(3): 2221-2230.

•Uemura A, Yamaguchi N, Xu Y, Wee W, Ichihashi Y, et al. (2018).
Regulation of floral meristem activity through the interaction ofAGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis. Plant Reprod
31(1): 89-105.

•Li R, Jeong K, Davis JT, Kim S, Lee S, et al. (2018). Integrated QTL andeQTL Mapping Provides Insights and Candidate Genes for Fatty Acid
Composition, Flowering Time, and Growth Traits in a F2 Population of aNovel Synthetic Allopolyploid Brassica napus. Front Plant Sci 9: 1632.

•Ichida JK, Staats KA, Davis-Dusenbery BN, Clement K, Galloway KE, etal. (2018). Comparative genomic analysis of embryonic, lineageconverted and stem cell-derived motor neurons. Development 145(22).

•Song YH, Kubota A, Kwon MS, Covington MF, Lee N, et al. (2018).
Molecular basis of flowering under natural long-day conditions inArabidopsis. Nat Plants 4(10): 824-835.

•Townsley BT, Covington MF, Ichihashi Y, Zumstein K, Sinha NR (2015).
BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultrasimple and fast library preparation protocol for strand specific mRNAlibrary construction. Front Plant Sci 6: 366.

•Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley BT, et al.
(2015). Light-Induced Indeterminacy Alters Shade-Avoiding Tomato
Leaf Morphology. Plant Physiol 169(3): 2030-47.