Product Information Sheet: Genotyping

Infinium QC Array-24 v1.0 BeadChip®

Cost-effective sample QC and tracking for biobanking and high-throughput genomics.
Table 1: Infinium QC Array-24 v1.0 BeadChip
Product Information
FeatureDescription

Total Number of Markers

15,949Number of Samples per
BeadChip

24Input DNA Requirement

200 ngAssay

Infinium HTS

Instrument Support

iScan or HiScan

Sample Throughput

5,760 samples/week

Scan Time per Sample

2.5 minutes

Description

Valueb

Product Specification

Call Rate (Females-Y Excluded +Males-Y Included)c

99.92%> 99%

Call Rate (Females + Males-Y
Excluded)c

99.96%> 99%

Reproducibility

99.99%> 99.9%Log R Deviation

0.13< 0.30daFigure 1: Infinium QC Array-24 v1.0 BeadChip—High-throughput, costeffective genotyping for quality control, tracking, and stratification applications.

Overview
The Infinium QC Array-24 v1.0 BeadChip offers a cost effective way
to perform sample tracking, quality control, and stratification for highthroughput genomics, biobanking, and any other application thatrequires validation of sample identity and quality. With 15,949 markers,
the Infinium QC Array-24 v1.0 BeadChip offers markers focusedon sex determination, ethnic ancestry, linkage, high value functional
content, and several other categories (Tables 1 and 2).
The Infinium QC Array‑24 v1.0 BeadChip utilizes the Infinium
24-sample HTS format. With the proven iScan® or HiScan® Systems,
the Infinium QC Array‑24 v1.0 BeadChip enables high accuracy andhigh-throughput genotyping required for quality control, tracking, andstratification applications (Table 1).

Learn More
To learn more about the Infinium QC Array‑24 v1.0 BeadChip andother Illumina genotyping products and services, visit
www.illumina.com/techniques/popular-applications/genotyping.html.

a. Estimate assumes 1 dual iScan system, 2 AutoLoader 2.x, 1 Tecan robots, 3 full-time
employees, and a 5-day work week.
b. Values are derived from genotyping 708 HapMap reference samples.
c. Due to the large percentage of Y markers, female samples will appear to have low callrates if Y markers are not excluded for female samples.
d. Value expected for typical projects using standard Illumina protocols. Tumor samplesand samples prepared by methods other than standard Illumina protocols excluded.

Table 2: Infinium QC Array-24 v1.0 BeadChip
Marker Information
Marker Category

Number of Markers

ADME

1009

Ancestry Informative

2910

Blood Group

1659

FingerprintSNPs

477

Linkage

5486

Extended MHC

930

Mitochondrial141

Sex Chromosomes

X
1840

Y
1401

PAR
535

Ordering Information
Infinium QC Array-24 v1.0 BeadChip Kit

Catalog No.

Infinium QC Array-24 v1.0 (48 samples)

20004347

Infinium QC Array-24 v1.0 (288 samples)

20004348

Infinium QC Array-24 v1.0 (1152 samples)

20004349

Illumina • 1.800.809.4566 toll-free (US) • +1.858.202.4566 tel • techsupport@illumina.com • www.illumina.com
For Research Use Only. Not for use in diagnostic procedures.
© 2016 Illumina, Inc. All rights reserved. Illumina, HiScan, Infinium, iScan, and the pumpkin orange color are trademarks of Illumina, Inc. and/or its affiliate(s) in the U.S. and/or other countries. Pub. No. 370-2016-002 Current as of 13 January 2016