For Research Use Only. Not for use in diagnostic procedures.

From small to very large: orthogonal, sensitive polar molecule analysis by CESI-MS
Bryan Fonslow1, Esme Candish1, and Steve Lock2
SCIEX Separations 1Brea, CA and 2Warrington, UKINTRODUCTION
Analysis of polar molecules can present challenges by traditional LC-MS methods that can be addressed by theaqueous nature of capillary zone electrophoresis (CZE)-based separations. The integration of capillaryelectrophoresis (CE) and electrospray ionization (ESI) into one process (termed CESI) provides the capabilities
to improve the sensitivity, speed, and comprehensiveness of polar biomolecule analysis.1 Many of thesebenefits have already been realized for post-translational modification analysis on biological2 and therapeutic3proteins, hydrophobic peptide quantitation,3 and top-down proteomic analysis.5, 6

MATERIALS AND METHODS

(B)
(A)

MS/MS Conditions:A SCIEX TripleTOF® 5600 or 6600 system with a NanoSpray® III source and CESI adapter were used,
controlled by Analyst® TF 1.7 Software. Positive or negative ESI was performed at ~1500 V scanning from 75 4500 m/z with 50 - 250 ms TOF MS, product ion MS/MS, and information dependent analysis (IDA) MS/MS
scan accumulation time ranges.
Data Analysis:High resolution MS and MS/MS spectra were analyzed using SCIEX PeakView®, MultiQuantTM, andBioPharmaViewTM softwares.

Peak 2~ ∆ + 1 Da

Peak 3(Main)

Peak 4~ ∆ 0 Da

3

Fructose-6-Phosphate

Glucose-1-Phosphate
Glucose-6-Phosphate

2Figure 1. CESI 8000 Plus High Performance Separation-ESI Module coupled to a TripleTOF® 6600 System. The core ofthe CESI-MS technology is an etched porous capillary tip that allows for electrospray ionization without dilution of the BGE
and sample by a make-up liquid. Instead a conductive liquid is used to apply the ESI voltage through the porous tip.

RESULTSPOLAR PESTICIDE AND HERBICIDE ANALYSIS. Polar pesticides and herbicides can present analyticalchallenges using traditional LC-MS methods. Capillary electrophoresis is ideally suited for separations andquantitation of polar ions. In this case, the separation of phosphonic and phosphoric acids, among other related
polar molecules (Figure 2A), facilitates the reproducible differentiation (Figure 2B) and quantification (Figure 2C)
of fosetyl aluminum degradation product phosphonate. Notably this can be performed in the presence of muchhigher natural abundances of the very similar phosphate ions and has reduced ion suppression from matrix.8(A)4Figure 3. Separation of phosphorylated sugars detected in negative ESI mode.

(A)

(B)

(C)

Z = 2‐

Z = 2‐(B)N
SO3SO3SO3SO3SO3SO3(C) Identical spikes of phosphonic acid into 0.1% formic acid (solvent) and almond, walnut, and pistachio extracts analyzed byCESI-MS/MS and LC-MS/MS. Black lines represent the linear curve fit for blank solvent calibration curves. Matrix
suppression was observed by LC-MS, but not CESI-MS, indicated by curved and linear calibration trends, respectively.
Markers outlined in red were samples diluted 5x with 0.1% formic acid.

Z = 2‐Fucose

N
SO3SO3SO3N

Z = 2‐3SO

N
SO3403.0507
SO3SO3

REFERENCES
1.
2.
3.
4.
5.

Moini, M., Anal. Chem. 2007, 79, 4241-4246.
6. Han X. et al., Anal Chem. 2014, 86, 11006-12.
Faserl, K. et al., J Chromatogr A., 2017, 17, 30180-2. 7. Santos, M. R., et al., SCIEX Technical Note RUO-MKT-18Bush, D.B. et al., Anal. Chem., 2016, 88, 1138−1146.
2325-A.
Lock, S., SCIEX Poster RUO-MKT-10-3951-A.
8. Fonslow, B.R., et al., SCIEX Technical Note RUO-MKT-07Han X. et al., J Proteome Res., 2014, 13, 6078-86.
4555-A.
9. Gulersonmez, M.C. et al., Electrophoresis, 2015, 00, 1–8.
10. Harris, R. J., et al. J Chrom B. 2001, 752, 233-245.

NSO3SO3SO3SO3SO3SO3

Z = 2‐SOSO3SO3SO3SO3SO3NSO3SO3N

Z = 2‐NSO3

Z = 2‐SO3

Z = 2‐SO3

Z = 2‐SO3SO3CESI is a versatile separation and ionization methodology that provides unique benefits for the analysis ofcharged, polar molecules in terms of separation selectivity and sensitivity. Very similar CZE conditions havebeen applied to the separations of a wide range of molecules using the appropriate MS detection conditions.
From nL injection volumes, analyses were performed from nanograms to picograms of sample.

The authors thank Wiley Hall, Safe Food Alliance, Fresno, CA; Spencer Walse, USDA-ARS-SJVASC, Parlier,
CA; Stephen Jacobson, Indiana University, Bloomington, IN; and Jason Rouse, Pfizer, Andover, MA for theircontributions and support to aspects of this work.

NN

CONCLUSIONSACKNOWLEDGEMENTS

Z = 2‐Hexose

Z = 2‐

SO3(B) Comparison of migration and retention times forphosphonic and phosphoric acid across a ~170 run
analysis, with sample electropherograms (CESIMS/MS) and chromatograms (LC-MS/MS). Baseline
resolution is achieved in the CESI-MS/MS analysis.

M9GlcNAc
NFigure 6. (A) Electropherogram for CZE-based separation of intact Trastuzumab with peaks assigned by number. (B)Deconvoluted MS spectra for each electrophoretic peak.

(B) The combined MS and MS/MS
spectra of APTS-glycans can be
annotated to identify fucosylated anda-fucosylated glycan structures.

M8

M7

Mass (Da)Figure 4. (A) Extracted ion
electropherogram of released, APTSlabeled mannose 5, 6, 7, 8, and 9mer glycans from RNAse B. IDA
analysis generated multiple spectra
for glycan peaks to confirm
identifications.

M5

M6

Figure 2. (A) Separation of polar herbicides
glyphosate and fosetyl aluminum; their degradation
products, phosphate, phosphonate, andaminomethylphosphonic acid (AMPA); and pesticide
glufosinate.

1RELEASED GLYCAN ANALYSIS. Glycans have roles in cellular interactions, protein folding, and protein
stability in general and disease biology. Glycans are released and analyzed from individual proteins, such as
therapeutics, and also from mixtures as complex as serum. The combination of a CE separation and MS/MS
detection facilitates identification and quantification of glycans from limited sample amounts.

Sample Preparation:Samples were diluted ~10-fold in either 10% BGE or a leading electrolyte (LE) and loaded into nanoVials (P/N5043467) for ~15 - 60 nL pressure injections. Glycan samples were released from proteins with PNGase andlabeled with APTS prior to dilution for analysis.
CESI Conditions:
CESI experiments were carried out with a SCIEX CESI 8000 Plus system equipped with a temperature
controlled auto sampler and a power supply with the ability to deliver up to 30 kV in normal and reverse polarity.
Samples were injected hydrodynamically using 5 psi for 1 - 60 sec corresponding to ~ 1 - 50 nL injection
volumes. CESI separations were achieved using either an OptiMS bare fused-silica capillary cartridge (P/NB07367), neutral capillary cartridge (P/N B07368), or cationic polymer-coated capillary7 with application of -30
to 30 kV and pressure (0 - 5 psi). Acetic acid and ammonium acetate (pH 2 – 4.5) with up to 10% isopropanol
was used as the BGE.

Peak 1~ ∆ + 6 Da

Intensity

We present a collection of analyses using CESI-MS that demonstrate the unique capabilities of a low nL/minCE-based separation coupled with mass spectrometry. Notably, all analyses are performed using very similar
CE and ESI conditions with simple acetate-based buffers as background electrolytes (BGEs). MS methods areadjusted appropriately based on the net charge (cationic or anionic) and size (~100 Da – 150 kDa) of themolecules. For such we have evaluated a varied collection of real-world analytes, primarily biomolecules, todemonstrate the capabilities of CESI-MS. On the small end of the size scale, ions as simple as phosphate andphosphonate have been separated and detected among other herbicides and their degradation products incommon use. Similar molecules in structure, such as isobaric phosphorylated sugars, along with other anionicmetabolites can also be resolved and identified in negative ESI mode by a CE-based separation. Larger
oligosaccharides, when labeled with an anionic dye like aminopyrene-trisulfonic acid (APTS), enable released
glycan analysis from proteins of therapeutic and clinical nature. Moving higher in the mass range, peptides,
intact proteins, and native protein complexes can all be separated to identify protein sequence, posttranslational modifications, and binding partners. A notable intact protein, monoclonal antibodies (mAb), can beseparated to identify charge variants that contribute to stability and efficacy. Collectively these examples
illustrate the simplicity of buffer systems that allow for the analysis of a wide range of highly-relevant polar
molecules by CESI-MS.

INTACT PROTEIN ANALYSIS. Charge heterogeneity analysis of monoclonal antibodies is a crucial
biopharmaceutical characterization. Traditional methods using cation exchange (CEX) chromatographic
fractionation with intact mass, peptide mapping, and capillary isoelectric focusing is labor intensive and can takedays to weeks to complete. CESI-MS analysis of a commercial, intact therapeutic mAb yielded a charge
heterogeneity-based separation in ~ 15 min (Figure 6A). Deconvoluted masses (Figure 6B) were consistent
with expected mass shifts, within the error of the mass detection, from a prior characterization by CEX10.

ANIONIC METABOLITE ANALYSIS. Similar to polar pesticides, LC-MS methods have short-comings in termsof separation resolution and sensitivity for the analysis of anionic metabolites. In particular, the resolution ofisobaric metabolite isomers can be particularly challenging. CESI-MS has benefits in terms of separation
selectivity and sensitivity for the analysis of anionic metabolites9 with data shown specifically for phosphorylatedsugar isomers (Figure 3).

ABSTRACTTRADEMARKS/LICENSING
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Document number: RUO-MKT-10-5532-A