Contents
Foreword
General Information
MICCAI 2013 Satellite Events Organization
Program of MICCAI 2013 Workshops,
Challenges and Tutorials - Sunday September 22
Location Maps for Sunday September 22
MLMI ’13

14

MBIA 2013

36

CBM8

18

MIAR 201340

MFCA ’13

20

SMMIA

44

IAAMI 201346

VTR 2013

48

4th International Workshop on Machine Learning in Medical Imaging

Computational Biomechanics for Medicine VIII

4th MICCAI workshop on Mathematical Foundations of Computational
Anatomy3rd International Workshop on Multimodal Brain Image Analysis

The 6th International Workshop on Medical Imaging and Augmented
Reality

Stochastic Modeling for Medical Image Analysis

CLIP 2013

22

CDMRI ’13

24

MICCAI- STENT

26

DTIChallenge

50

MMBC 2013

28

ASPS- BRATS

52

M2CAI

30

AMIDA 13

54

ABDI 201332

Workshop on Clinical Image-based Procedures: Translational
Research in Medical Imaging

MICCAI 2013 Workshop on Computational Diffusion MRIThe 2nd International MICCAI- Workshop on Computer
Assisted Stenting

Mathematical Methods for Brain Connectivity

Modeling and Monitoring of Computer Assisted Interventions

5th International Workshop on Abdominal Imaging: Computationaland Clinical Applications

Introduction to Analysis and Applications of Molecular Imaging

Visual tracking and 3D reconstruction for computer assisted
interventions: state-of-the-art and challenges

MICCAI DTI Tractography Challenge on Peritumoral White Matter
Anatomy for Neurosurgical Decision- Making

NCI- MICCAI 2013 Challenges: Automated Segmentation of Prostate
Structures (ASPS) and Multiparametric Brain Tumor Segmentation

MICCAI Grand Challenge: Assessment of Mitosis Detection
Algorithms 2013

Program of MICCAI 2013 Workshops,
Challenges and Tutorials - Thursday September 26
Location Maps for Thursday September 26
CSI 2013

60

MCBR-CDS ’13

78

MeshMed 2013

64

PIA 2013

80

SACAI 2013

66

BIA 2013

82

RMI
68

R based medical imaging tutorial

84

MCV

Intelligent MR

70Intelligent imaging: Linking MR acquisition and processing

86

BIV- PCS

CTK-MICCAI 2013

88

SATA ’13

90

MRBrainS13

94

MICCAI 2013 workshop on Computational Methods and ClinicalApplications for Spine Imaging

MICCAI 2013 Workshop on Mesh Processing in Medical Image
Analysis

MICCAI 2013 workshop on Systems and Architectures for Computer
Assisted Interventions

MICCAI 2013 workshop on Medical Computer Vision

MICCAI 2013 workshop on Bio-Imaging and Visualization for
Patient- Customized Simulations

STACOM ’13

4th International Workshop on Stastical Atlases and Computational
Models of the HeartHPC

The Sixth International Workshop on High Performance Computing
for Biomedical Image Analysis

MICCAI 2013 workshop on Medical Content-based Retrieval for
Clinical Decision Support

Fifth International Workshop on Pulmonary Image Analysis

MICCAI 2013 Workshop on Breast Image Analysis

Common architecture for algorithm development and deployment

72

MICCAI Challenge Workshop on Segmentation: Algorithms,
Theory and Applications

76

MICCAI Grand Challenge on MR Brain Image Segmentation1

2

Foreword
Welcome to the MICCAI 2013 workshops, challenges and tutorials!
The 16th International Conference on Medical Image Computing and Computer Assisted Intervention,
MICCAI 2013, will be held from September 22nd to 26th, 2013 in Nagoya, Japan. In addition to thethree- day MICCAI main conference, the annual MICCAI event hosting satellite workshops, tutorials
and challenges will be scheduled on September 22nd and 26th.
This year’ s call for workshop, tutorial and challenge proposals recorded 30 workshop/challenge
proposals within 4 half- day proposals and 7 tutorial proposals within 4 half- day proposals. These
proposals were independently reviewed by the chair team who eliminate conflict of interest. The chairteam utilized several criteria to select the submitted workshops, tutorials and challenges. Workshop
proposals were reviewed under whether or not workshops emphasize open problems addressed in
the MICCAI community. The purpose of workshops is to provide a comprehensive forum on topics
that might be partially explored during the main conference. On the other hand, tutorial proposals
were considered if and only if the proposed tutorials could provide educational material for training
new professionals including students, clinicians and researchers. The chair team also emphasizes
tutorials on dealing with an existing sub- discipline of MICCAI with known material, approaches andopen problems. Moreover, challenge proposals were determined by their interaction andencouragement in problem solving. Although all submitted proposals were very attractive, the chairteam primarily selected 21 workshops, 6 tutorials and 5 challenges within one challenge being hosted
at a workshop. After consulting with the workshop, tutorials and challenge organizers, the chair teameventually included 21 workshops, 5 tutorials and 6 challenges in this program. Basically, workshops
and challenges follow a single stream of oral presentation within significant time for questions anddiscussion. They also involve panel and poster sessions. Tutorials will be presented by lectures thatare involved with sufficient discussion.
We thank all workshop, tutorial and challenge organizers for their hard work and effort in making sucha comprehensive and unique program available. We hope that you will enjoy this program of MICCAI2013 Workshops, Challenges and Tutorials. We look forward to your continuing support,
contributions and participation in future MICCAI conferences.
Hongen Liao
Akinobu Shimizu
Pierre Jannin
Simon Warfield
MICCAI 2013 Workshop Chair and Co- Chairs

3General Information
Registration for all workshop, challenge and tutorial takes place at the Toyoda Auditorium groundfloor. Workshops, challenges and tutorials will be held in Integrated Building (IB) including IB Lecture
Hall and rooms IB011 to IB015, EcoTopia Science (ES) building with rooms ES021 to ES025 androoms ES033 to ES035, and the second floor of Noyori Conference Hall. Lunch and coffee will be
provided at all locations. IB, ES building, and Noyori Conference Hall are a 5- minute walk from the
Toyoda Auditorium.

Registration Desk Opening Hours:

Registration desk is located at Toyoda Auditorium.
Sunday, September, 22 2013
7:30 - 19:00
Monday, September, 23 2013
7:30 - 18:00
Tuesday, September, 24 2013
8:00 - 18:00
Wednesday, September, 25 2013
8:00 - 18:00
Thursday, September, 26 2013
8:00 - 16:00

Delegate Badge

A name badge will be provided with your registration documents on site. Please wear your delegatebadge at all times. All entrances to conference, workshops, exhibition halls and social events aremanned by ushers. Only MICCAI2013 participants wearing an appropriate official delegate badge willbe allowed to access the conference site and to attend the scientific and social programs.

Internet AccessParticipants have two options to assess wireless internet available in Nagoya University as follows:
・NUWNET: You could assess the university- wide internet access service “nuwnet” by anissued guest account, which will be valid until September 26, 2013. You will also receive the
Nagoya University Internet Security Guideline in your registration kit. Please read this guideline
carefully before your internet access. The service set identification (SSID) is either “nuwnet” or“nuwnet1x”. Please use either SSID “nuwnet (5GHz)” or “nuwnet1x (5GHz)” if you are in the IBplace.
・EDUROAM: Nagoya University is a member of the Eduroam Network. You could connect
your WiFi- enabled devices to the Eduroam Internet by your own eduroam account that you may
obtain from your university. Please also keep in mind that some areas in Nagoya University
provide the eduroam service using 5GHz band (IEEE 802. 11a) in addition to 2. 4GHz band
service (IEEE 802.11g).

Poster Presentation

Workshop posters in IB building will be set up close to their assigned workshop rooms. The posters
settled up in ES building will be placed in a passageway on the 2nd floor. The posters scheduled in
Noyori Conference Hall will be located in passageways of the ground floor. Posters should be
mounted on the workshop day from 8:30 and removed before 18:00. Please notice that all unremoved
posters will be discarded after the workshop day. Please also make sure your poster size adhered toStandard A0 (841 mm in width, 1189 mm in height) that you should strictly follow in preparing your4

posters. The conference will provide materials for mounting your posters.

Lunch and Coffee Breaks

Lunch and Coffee are included in registration and are distributed at each building.

Oral Presentation

Please follow the guideline for each workshop, tutorial and challenge.

5

MICCAI 2013 Satellite Events Organization
General Chair and Co- Chair

Kensaku Mori (Nagoya University, Japan)
Ichiro Sakuma (The University of Tokyo, Japan)

Workshops, Tutorials and Challenges Chair and Co- Chairs
Hongen Liao, Tsinghua University, China
Akinobu Shimizu, Tokyo University of Agriculture and Technology, Japan
Pierre Jannin, Universite de Rennes 1, France
Simon Warfield, Boston Children’s Hospital, Harvard, USA

Workshops / Tutorials / Challenges Organizers
Brian B. Avants
Stephen Aylward
Miguel González Ballester
Simone Balocco
Reinhard R. Beichel
Geert Jan Biessels
Nicolas Bloch
Stefan Bohn
Oliver Burgert
Oscar Camara
Laurent ChauvinKiyoyuki Chinzei
Larry Clarke
Matt Clarkson
Marleen de Bruijne
Stefanie Demirci
Rachid Deriche
Maxime Descoteaux
Klaus Drechsler
Stanley Durrleman
Ayman El-Baz
Andinet Enquobahrie
Andinet Enquobahrie
Marius Erdt
Aly A. Farag
Keyvan Farahani
Tom Fletcher
David J. ForanJohn Freymann
Fei Gao
Carlo Gatta
Bogdan Georgescu
Guido Gerig

6

Elizabeth Gerstner
Stamatia Giannarou
Georgy Gimel’farb
Alexandra Golby
Hayit Greenspan
Gregory D. Hager
Nobuhiko Hata
John Hipwell
Heng Huang
Henkjan Huisman
Hiroshi Iseki
Carl Jaffe
Pierre Jannin
Sarang Joshi
Sven Kabus
Jayashree Kalpathy-Cramer
Nico KarssemeijerPeter Kazanzides
Michael Kelm
Ron Kikinis
Boklye Kim
Atilla P. Kiraly
Justin Kirby
Takayuki Kitasaka
Tobias Klinder
Despina Kontos
Jan Martin Kuhnigk
Hugo Kuijf
Rajesh Kumar
Bennett Landman
Georg Langs
Su-Lin Lee
Joshua A. Levine

Shuo Li
Hongen Liao
Marius George Linguraru
Cristian Linte
Tianming Liu
Xiongbiao Luo
Anant Madabhushi
Tommaso Mansi
Anne L Martel
Ken Masamune
Ken Masamune
Jamie R. McClellandAdriënne Mendrik
Bjoern Menze
Charles R. Meyer
Karol Miller
Albert Montillo
Henning Mueller
Arya Nabavi
Martyn Nash
Gemma Nedjati-Gilani
Thomas Neumuth
Poul M.F. Nielsen
Mads Nielsen
Marco Nolden
Lauren O’Donnell
Cristina Oyarzun Laura
Nicolas Padoy
Eleftheria Panagiotaki
Rasmus R. Paulsen
Xavier Pennec
Terry Peters
Steve Pieper

Workshop Publicity Chair and Co- Chairs
Xiongbiao Luo (Nagoya University)
Masahiro Oda (Nagoya University)
Yoshihiko Nakamura (Nagoya University)

Workshops / Tutorials / Challenges Organizers
Carlo Pierpaoli
Josien P. W. Pluim
Mihaela Pop
Sonia Pujol
Sonia Pujol
Mauricio Reyes
Kawal Rhode
Rogerio Richa
Simon Rit
Daniel Rueckert
Mirabela Rusu
Joel H. Saltz
Julia SchnabelThomas Schultz
Maxime Sermesant
Raj Shekhar
Dinggang Shen
Li Shen
Kuangyu Shi
Stefan Sommer

Nikolaos Stathonikos
Colin Studholme
Martin Styner
Kenji Suzuki
Takashi Suzuki
Tanveer Syeda-Mahmood
Raphael Sznitman
GeirArne TangenJoãoManuel R. S. Tavares
Bertrand Thirion
Zhuowen Tu
Paul J. van Diest
Eva van Rikxoort
Michael VannierGaël VaroquauxArchana Venkataraman
Ragini Verma
Mitko Veta
Max Viergever
Max A. Viergever

Koen Vincken
Sandrine Voros
Fei WangSimon Warfield
Simon Warfield
William Wells
William Wells
Stefan Wesarg
Carl-Fredrik Westin
Adam Wittek
Pingkun Yan
Guang-Zhong Yang
Lin Yang
Jianhua Yao
Pew-Thian Yap
Hiro Yoshida
Alistair Young
Sascha Zelzer
Yongjie Zhang
Guoyan Zheng

7

Program of MICCAI 2013
Workshops, Challenges
and Tutorials
September 22

8

Location Maps for Sunday September 22

September 22 ｜ 9

10 ｜ September 22

September 22 ｜ 11

12 ｜ September 22

September 22 ｜ 13

MLMI ’13 (08:30 – 17:15) – IB Lecture Hall
4th International Workshop on Machine Learning in Medical
Imaging
http://mlmi2013.web.unc.edu/
Organizers: Dinggang Shen, Pingkun Yan, Kenji Suzuki, Fei Wang
08:30 - 08:45

Opening Remarks

08:45 - 10:00

Morning Session 1: Plenary Talk
Basics of Bayesian Modeling in Machine Learning
Naonori Ueda

10:00 - 10:30

Coffee break

10:30 - 12:00

Morning Session 2: Image Segmentation and Registration
Session Chair: TBD

Unsupervised Deep Learning for Hippocampus Segmentation in 7. 0 Tesla MR
Images
Minjeong Kim, Guorong Wu, Dinggang Shen

Improving probabilistic image registration via reinforcement learning anduncertainty evaluation
Tayebeh Lotfi Mahyari, Lisa Tang, Shawn Andrews, Ghassan Hamarneh

Patch-based Segmentation without Registration: Application to Knee MRI
Zehan Wang, Claire Donoghue, Daniel Rueckert

A unified approach to shape model fitting and non-rigid registration
Marcel Luethi, Christoph Jud, Thomas Vetter

Decision Forests with Spatio-temporal Features for Graph-based Tumor
Segmentation in 4D Lung CT
Hamidreza Mirzaei, Lisa Tang, Ghassan Hamarneh, Rene Werner

12:00 - 13:30

Lunch & Posters
Learning-boosted Label Fusion for Multi-atlas Auto-Segmentation
Xiao Han

Volumetric Segmentation of Key Fetal Brain Structures in 3D UltrasoundRemi Cuingnet, Raffaele Napolitano, David Roundhill, Aris Papageorghiou, Roberto Ardon, J
Alison Noble

A New Algorithm of Electronic Cleansing for Weak Faecal-Tagging CT
Colonography
Le Lu, Bing Jian, Dijia Wu

A Transfer-Learning Approach to Image Segmentation Across Scanners by
Maximizing Distribution Similarity
Annegreet Van Opbroek, Arfan Ikram, Meike Vernooij, Marleen De Bruijne

fMRI Analysis with Sparse Weisfeiler-Lehman Graph Statistics
Katerina Gkirtzou, Jean Honorio, Rita Goldstein, Dimitris Samaras, Matthew Blaschko

14 ｜ September 22

Multi-task Sparse Classifier for Diagnosis of MCI Conversion to AD with
Longitudinal MR images
Manhua Liu, Heung-Il Suk, Dinggang Shen

Sparse Multimodal Manifold-regularized Transfer Learning for MCI Conversion
Prediction
Bo Cheng, Daoqiang Zhang, Biao Jie, Dinggang Shen

Flow-based Stereovision Reconstruction
Songbai Ji, Xiaoyao Fan, Alex Hartov, David Roberts, Keith Paulsen

Discriminative Group Sparse Representation for Mild Cognitive Impairment
Classification
Heung-Il Suk, Chong-Yaw Wee, Dinggang Shen

Temporally Dynamic Resting-State Functional Connectivity Networks for EarlyMCI Identification
Chong-Yaw Wee, Sen Yang, Pew-Thian Yap, Dinggang Shen

An Improved Optimization Method for the Relevance Voxel Machine
Melanie Ganz, Mert Sabuncu, Koen Van Leemput

Disentanglement of Session and Plasticity Effects in Longitudinal fMRI Studies
Vittorio Iacovella, Paolo Avesani, Gabriele Miceli

Identification of Alzheimer’ s Disease from Incomplete Multimodal Dataset via
Matrix Shrinkage and Completion
KimHan Thung, Chong-Yaw Wee, Pew-Thian Yap, Dinggang Shen

Augmenting Auto-context with Global Geometric Features for Spinal Cord
Segmentation
Jeremy Kawahara, Chris McIntosh, Roger Tam, Ghassan Hamarneh

Large-Scale Manifold Learning Using an Adaptive Sparse Neighbor Selection
Approach for Brain Tumor Progression Prediction
Loc Tran

Ensemble Universum SVM Learning for Multimodal Classification of Alzheimer’s
DiseaseXiaoke Hao, Daoqiang Zhang

Joint Sparse Coding Spatial Pyramid Matching For Classification of Color Blood
Cell Image
Jun Shi, Yin Cai

13:30 - 15:00

Afternoon Session 1: Computer-aided Detection/Diagnosis
Session Chair: TBD

Integrating Multiple Network Properties for MCI Identification
Biao Jie, Daoqiang Zhang, Chong-Yaw Wee, Heung-Il Suk, Dinggang Shen

Fully Automatic Detection of Carotid Artery from Volumetric Ultrasound Images
Using Anatomical Position Dependent LBP Features
Fumi Kawai, Keisuke Hayata, Jun Ohmiya, Satoshi Kondo, Kiyoko Ishikawa, Masahiro Yamamoto

Thickness NETwork (ThickNet) Features for the Detection of Prodromal AD
Pradeep Reddy Raamana, Lei Wang, Mirza Faisal Beg

September 22 ｜ 15

Patient-Specific Manifold Embedding of Multispectral Images using Kernel
Optimization
Veronika Zimmer, Roger Fonolla, Karim Lekadir, Gemma Piella, Corné Hoogendoorn, Alejandro
Frangi

A 2.5D Colon Wall Flattening Model for CT-based Virtual Colonoscopy
Huafeng Wang, Xinfeng Gu, Jerome Liang, Lihong Li

15:00 - 15:30

Coffee break

15:30 - 17:00

Afternoon Session 2: Classification/Prediction
Session Chair: TBD

A Bayesian Algorithm for Image-based Time-to-event Prediction
Mert Sabuncu

Metric Space Structures for Computational Anatomy
Jianqiao Feng, Xiaoying Tang, Minh Tang, Carey Priebe, Michael Miller

On Feature Relevance in Image-based Prediction Models: An Empirical Study
Ender Konuloglu, Melanie Ganz, Koen Van Leemput, Mert Sabuncu

HEp-2 Cell Image Classification: A Comparative Analysis
Praful Agrawal, Mayank Vatsa, Richa Sing

MRI based markers for neuromuscular disease classification
Katerina Gkirtzou, Matthew Blaschko, Aristeidis Sotiras, Thibault Varacca, Gauillame Bassez,
Jean Francois Deux, Alain Rahmouni, Nikos Paragios

17:00 - 17:15

16 ｜ September 22

Closing remarks

September 22 ｜ 17

CBM8 (09:00 – 17:30) – Room IB011
Computational Biomechanics for Medicine VIII
http://school.mech.uwa.edu.au/CBM2013/
Organizers: Karol Miller, Adam Wittek, Poul M.F. Nielsen
09:00 - 09:10

Opening remarks
Karol Miller

09:10 - 12:30

Session 1:
Computational Biomechanics of Soft Organs

09:10 - 10:00

Keynote 1:
The barbarians are at the gates: Why computational biomechanics?
Gabor Fichtinger

10:00 - 10:30

Modeling Three Dimensional Avascular Tumor Growth
Sachin Man Bajimaya Shrestha

10:30 - 11:00

Coffee Break

11:00 - 11:30

Whole-Body Image Registration Using Patient Specific Non-linear Finite Element
Model
Mao Li

11:30 - 12:00

From Detection to Rupture: A Serial Computational Fluid Dynamics Study of a
Rapidly-Expanding, Patient Specific, Ruptured Abdominal Aortic Aneurysm
Barry Doyle

12:00 - 12:30

Meshless Elasticity Model and Contact Mechanics-based Verification Technique.
Rifat Aras

12:30 - 14:10

Lunch

14:10 - 17:30

Session 2:
Musculoskeletal System and Injury Biomechanics

14:10 - 15:00

Keynote 2:
Small Computations in OR

15:00 - 15:30

Hip, Knee and Ankle Joint Forces in Healthy Weight, Overweight and Obese
Individuals During Walking

Kiyoyuki Chinzei

Brooke A Stanford

15:30 - 16:00

Coffee Break

16:00 - 16:30

Modelling the Tumour Growth along a Complex Vasculature Using Cellular
Automata
Nathan Deacon

16:30 - 17:30

18 ｜ September 22

Panel discussion on challenges for computational biomechanics for
medicine and closure(led by Karol Miller)

September 22 ｜ 19

MFCA ’13 (08:30 – 17:20) – Room ES034
4th MICCAI workshop on Mathematical Foundations ofComputational Anatomy
http://www-sop.inria.fr/asclepios/events/MFCA13/
Organizers: Xavier Pennec, Sarang Joshi, Mads Nielsen, Tom Fletcher, Stanley Durrleman,
Stefan Sommer
08:30 - 10:00

Oral Session 1: LDDMM and scale

08:30 - 08:40

Welcome announcements
Workshop chairs

08:40 - 09:20

Riemannian metrics for statistics on shapes: Parallel transport and scale
invarianceMarc Niethammer and Francois-Xavier Vialard

09:20 - 10:00

Symmetries in LDDMM with higher-order momentum distributions
Henry O. Jacobs

10:00 - 10:30

Coffee break

10:30 - 12:30

Oral Session 2: Brain Morphometry

10:30 - 11:10

Combining Thickness Information with Surface Tensor-based Morphometry for the
3D Statistical Analysis of the Corpus Callosum
Liang Xu, Olivier Collignon, Gang Wang, Yue Kang, Franco Leporée, Jie Shi, Yi Lao, Anand Joshi,
Natasha Leporée, and Yalin Wang

11:10 - 11:50

A right-invariant Riemannian distance on GL + (n) and hypothesis testing on
Jacobian matrices

11:50 - 12:30

Stratified Voxel-Based Morphometry (sVBM)

Ernesto Zacur, Matias Bossa, and Salvador Olmos
M. Jorge Cardoso, Ivor Simpson, and Sebastien Ourselin

12:30 - 13:30

Lunch

13:30 - 15:00

Session 3: Shape and Image Registration

13:30 - 14:10

Surface Shape Matching
Parameterizations

andAnalysisusing

Intrinsic

Coordinate

Shantanu H. Joshi, Jie Shi, Yalin Wang, Katherine L. Narr, Arthur W. Toga, and Roger P. Woods

14:10 - 14:50

A Relaxed Problem of Registration Based on the Saint Venant- Kirchhoff MaterialStored Energy for the Mapping of Mouse Brain Gene Expression Data to a
Neuroanatomical Mouse Atlas
Ratiba Derfoul and Carole Le Guyader

15:00 - 15:30

Coffee break

15:30 - 17:20

Session 4: Short Orals

15:30 - 15:55

Computing Diffeomorphic Paths with Applications to Cardiac Motion Analysis
Dohyung Seo, Jeffrey Ho, Jay H. Traverse, John Forder, and Baba C. Vemuri

20 ｜ September 22

15:55 - 16:20

The Shape Collapse Problem in Image Registration.
Oguz C. Durumeric, Ipek Oguz, and Gary E. Christensen

16:20 - 16:45

Sparse Gaussian graphical model of spatial distribution of anatomical landmarks whole torso model building with training datasets of partial imaging ranges
Shouhei Hanaoka, Yoshitaka Masutani, Mitsutaka Nemoto, Yukihiro Nomura, Soichiro Miki,
Takeharu Yoshikawa, Naoto Hayashi, and Kuni Ohtomo

16:45 - 17:10

Cortical Shape Analysis using the Anisotropic Global Point Signature
Anand A Joshi, Syed Ashrafulla, David W Shattuck, Hanna Damasio, and Richard M Leahy

17:10 - 17:20

Concluding remarks
Workshop chairs

September 22 ｜ 21

CLIP 2013 (09:00 – 17:00) – Room ES025
Workshop on Clinical Image-based Procedures: Translational
Research in Medical Imaging
http://miccai-clip.org/2013/index.html
Organizers (alphabetically): Klaus Drechsler, Marius Erdt, Miguel González Ballester,Marius George Linguraru, Cristina Oyarzun Laura, Raj Shekhar, Stefan Wesarg
09:00 - 09:15

Opening Remarks

09:15 - 10:00

Keynote 1
What is the essential information in Image-Guided Minimally Invasive Surgery?
Makoto Hashizume

10:00 - 10:30

Short Orals 1
First Clinical Experience with BMD Assessment in Vertebrae Using Dual-energy
CT
Stefan Wesarg, Julian Wichmann, Christian Booz, Konstantinos Kafchitsas, M. Fawad Khan

Path Planning for Multi-Port Lateral Skull Base Surgery based on First ClinicalExperiences
Meike Becker, Stefan Hansen, Stefan Wesarg, Georgios Sakas

Automated Kidney Detection and Segmentation in 3D Ultrasound
Matthias Noll, Li Xin

Placement of external ventricular drains using an average model
Ingerid Reinertsen, Asgeir Jakola, Ole Solheim, Frank Lindseth, Tormod Selbekk, Geirmund
UnsgårdPrototype Design and Phantom Evaluation of a Device for Co-Registered
MRI/TRUS Imaging of the Prostate
Andriy Fedorov, Sang-Eun Song, Tina Kapur, Robert Owen, Emily Neubauer Sugar, Paul Nguyen,
William Wells III, Clare Tempany

Surgical Workflow Analysis, Design and Development of an Image-Based
Navigation System for Endoscopic Interventions
Frederic Perez, Sergio Vera, Gloria Fernández-Esparrach, Henry Cordova, Raul San Jose, Javier
Herrero, Miguel Ángel González Ballester

10:30 - 11:00

Coffee Break / Poster Session

11:00 - 12:00

Long Orals 1
Modelling Smooth Intensity Changes in the Putamen for Diagnosis of Sporadic
CJD
Samira Bouyagoub, Iulia Cimpan, Ali Hojjat, Alfred Kume, Yee Mah, Alan Colchester

Statistical analysis of relative pose of the thalamus in preterm neonates
Yi Lao, Jie Shi, Yalin Wang, Rafeal Ceschin, Darryl Hwang, M. D. Nelson, Ashok Panigrahy,
Natasha Lepore

Structure-guided Nonrigid registration of CT-MR Pelvis Scans with large
deformations in MR-based Image Guided Radiation Therapy
David Rivest-Henault, Peter Greer, Jurgen Fripp, Jason Dowling
22 ｜ September 22

Automatic Detection of Misalignment in Rigid 3D-2D Registration
Uroš Mitrović, Žiga Špiclin, Boštjan Likar, Franjo Pernus

12:00 - 13:00

Lunch Break

13:00 - 13:45

Keynote 2
Image-based orthopaedic surgery
Nobuhiko Sugano

13:45 - 15:00

Long Orals 2
On-line lumen centre detection in gastrointestinal and respiratory endoscopy
Carles Sanchez, Jorge Bernal, F.Javier Sanchez, Debora Gil

Towards A Clinical Stereoscopic Augmented Reality System for Laparoscopic
Surgery
Xin Kang, Jihun Oh, Emmanuel Wilson, Timothy Kane, Craig Peters, Raj Shekhar

Landmark-based Surgical Navigation
Adrian Schneider, Christian Baumberger, Mathias Griessen, Simon Pezold, Jörg Beinemann,
Philipp Jürgens, Philippe C. Cattin

Image-based bronchoscopy navigation system based on CT and C-arm
fluoroscopy
Teena Steger, Klaus Drechsler, Stefan Wesarg

Inter-slice Correspondence for 2D Ultrasound-guided Procedures
Matthew Toews, Alexandra Golby, William Wells III

15:00 - 15:30

Coffee Break / Poster Session / Best Paper Award Voting

15:30 - 16:30

Long Orals 3
MR Enterography Image Fusion in Small Bowel Analysis
Juan Cerrolaza, Nabile M. Safdar, Raymond W. Sze, Marius George Linguraru

Forming the interface between doctor and designing engineer
Christine Schoene, Ralph Stelzer, Philipp Sembdner

Automatic Optimization of Depth Electrode Trajectory Planning
Rina Zelmann, Silvain Beriault, Kelvin Mok, Claire Haegelen, Jeffery A. Hall, Andre Olivier, G.
Bruce Pike, D. Louis Collins

Automatic Markov Random Field Segmentation of Susceptibility-Weighted MR
Venography
Silvain Beriault, Marika Archambault-Wallenburg, Abbas F. Sadikot, D. Louis Collins, G. Bruce Pike

16:30 - 17:00

Closing Discussion / Best Paper Awards

September 22 ｜ 23

CDMRI ’13 (08:45 – 17:15) – Room IB015
MICCAI 2013 Workshop on Computational Diffusion MRI
http://cmic.cs.ucl.ac.uk/cdmri13/
Organizers: Gemma Nedjati-Gilani, EleftheriaPanagiotaki, Lauren O’Donnell, Thomas Schultz
08:45 - 09:00

Welcome and introduction

09:00 - 10:00

Challenge: White Matter Model Challenge

09:00 - 09:07

Benoit Scherrer

09:07 - 09:14

Xinghua Zhu

09:14 - 09:21

Mohammad Alipoor

09:21 - 09:28

Lin Mu09:28 - 09:35

Torben Schneider

09:35 - 09:42

Uran Ferizi

09:42 - 10:00

Results & discussion

10:00 - 10:30

Coffee Break and Posters

10:30 - 11:30

Keynote Lecture I
Diffusion MRI: What can we retrieve from the signal?

11:30 - 12:30

Keynote Lecture II
Multi-atlas multi-contrast brain parcellation based on diffusion tensor imaging andapplication to individualized anatomical phenotype analysis

12:30 - 13:30

Lunch and Posters

13:30 - 14:15

Oral Session I: High angular methods
Non-Negative Spherical Deconvolution (NNSD) for Fiber Orientation Distribution
Function Estimation

Denis Le Bihan

Susumu Mori

Jian Cheng et al.

Diffusion Propagator Estimation Using Radial Basis Functions
YogeshRathi et al.

14:15 - 15:00

Oral Session II:Group studies & statistical analysis
Statistical Analysis of White Matter Integrity for the Clinical Study of Specifc
Language Impairment in Children
Emmanuel Vallée et al.

Estimating Uncertainty in White Matter Tractography Using Wild Non-Local
Bootstrap
Pew-Thian Yap et al.

15:00 - 15:30

24 ｜ September 22

Coffee Break and Posters

15:30 - 17:00

Oral Session III: Diffusion Modelling and Experimental Design
Fiberfox: An extensible system for generating realistic white matter software
phantoms
Peter Neher et al.

Uncertainty in Tractography via Tract Confidence Regions
Colin Brown et al.

A Novel Riemannian Metric for Geodesic Tractography in DTI
Andrea Fuster et al.

Groupwise Deformable Registration of Fiber Track Sets using Track Orientation
Distributions
Daan Christiaens et al.

17:00 - 17:15

Closing Remarks

Posters
1. Choosing a Tractography Algorithm: On the Effects of Measurement Noise
Andre Reichenbach et al.

2. Comparing Simultaneous Multi-slice Diffusion Acquisitions
Yogesh Rathi et al.

3. The Diffusion Dictionary in the Human Brain is Short: Rotation Invariant Learning of Basis
Functions
Marco Reisert et al.

4. Effect of Data Acquisition and Analysis Method on Fiber Orientation Estimation in Diffusion MRI
Bryce Wilkins et al.

5. Groupwise registration for correcting subject motion and eddy current distortions in diffusion MRI
using a PCA based dissimilarity metric
Wyke Huizinga et al.

6. Fiber Based Comparison of Whole Brain Tractographies with Application to Amyotrophic Lateral
Sclerosis
Gali Zimmerman-Moreno et al.

7. A Framework for ODF Inference by using Fiber Tract Adaptive MPG Selection
Hidekata Hontani et al.

8. A quantitative evaluation of errors induced by reduced field-of-view in diffusion tensor imaging
Jan Hering et al.

9. Model-based super-resolution of diffusion MRI
Alexandra Tobisch et al.

September 22 ｜ 25

MICCAI-STENT (13:30 – 17:00) – Room IB012
The 2nd International MICCAI-Workshop on Computer Assisted
Stenting
http://campar.in.tum.de/STENT2013/WebHome
Organizers: Simone Balocco, Carlo Gatta, Stefanie Demirci, Geir Arne Tangen, Su-Lin Lee
13:30 - 13:45

Welcome and Workshop Introduction

13.45 - 15:15

Oral Session 1
Chairs: Balocco Simone / Su-lin Lee

Automatic Flow Diverter Detection in Cerebral C-arm CT Images (Submission)
Ying Zhu et al.

Investigation of Hemodynamics in a Large Unruptured Intracranial Aneurysm
Using Computational Fluid Dynamics Technique (Submission)
Wen Liu, Lin Shi, Tianfu Wang, Defeng Wang and Simon Yu

Development of a System for Endovacular Planning of AAA Interventions(Submission)
Ivan Macia, Jon Haitz Legarreta, Sabarinath Rajasekharan, Elena Muñoz, Oscar Hernandez,
Mariano De Blas Bravo, Jose Maria Egaña and Manuel Graña

Learning-based Modeling of Endovascular Navigation for Collaborative Robotic
Catheterization (Invited)
H. Rafii-Tari, J. Liu, S.-L. Lee, G.-Z.Yang

15:15 - 15.30

Break

15:30 - 17.00

Oral Session 2
Chairs: Carlo Gatta / Geir ArneTangen

Stent shape estimation through a comprehensive interpretation of ivusimage(Invited)
Francesco Ciompi, Simone Balocco, Carles Caus, Josepa Mauri, Petia Radeva

3D/3D Registration of Coronary CTA and Biplane XA Reconstructions for
Improved Image Guidance (Submission)
Gerardo Dibildox, Mark Punt, Jean-Paul Aben, Carl Schultz, Wiro Niessen and Theo van Walsum

Visualization of stent-graft placement in deformed vascular structure in EVAR
procedure (Submission)
Aurélien Duménil, Adrien Kaladji, Juliette Gindre, Miguel Castro, Michel Rochette, Cemil Göksu,Antoine Lucas and Pascal Haigron

Augmented Reality Guidance System for Transcatheter Aortic Valve Implantation(Submission)
Jonathan McLeod, Maria Currie, John Moore and Terry Peters

26 ｜ September 22

September 22 ｜ 27

MMBC 2013 (08:45 – 17:00) – Room IB014
Mathematical Methods for Brain Connectivity
http://groups.csail.mit.edu/vision/mmbc2013/
Organizers: Archana Venkataraman, Bertrand Thirion, Gaël Varoquaux, Maxime Descoteaux,Rachid Deriche, Ragini Verma
08:45 - 09:00

Opening Remarks

09:00 - 09:45

Keynote Lecture I
Modeling of Early Brain Development from Longitudinal Diffusion MRI for
Assessment of Growth Trajectories

Archana Venkataraman

Guido Gerig

09:45 - 10:15

Oral Session I - Properties of Structural Connectivity
Chair: Yogesh Rathi

Disrupted Brain Connectivity in Alzheimer’ s Disease: Effects of Network
Thresholding
Madelaine Daianu et al.

Rich Club Analysis of Structural Brain Connectivity at 7 Tesla versus 3 Tesla
Emily Dennis et al.

10:15 - 10:45

Coffee Break

10:45 - 11:30

Keynote Lecture II
Organization of the Human Brain Estimated by Intrinsic Functional Connectivity
Thomas Yeo

11:30 - 12:15

Oral Session II - Multimodal and Population Analysis
Chair: Bertrand Thirion

Coupled Intrinsic Connectivity: A Principled Method for Exploratory Analysis of
Paired Data
Dustin Scheinost et al.

Power Estimates for Voxel-Based Genetic Association Studies using Diffusion
Imaging
Neda Jahanshad et al.

Global Changes in the Connectome in Autism Spectrum Diseases
Caspar Jonas Goch et al.

12:15 - 12:30

Group DiscussionGaël Varoquaux

12:30 - 14:15

Lunch & Poster Session

14:15 - 15:00

Oral Session III - Statistical Analysis of dMRI (CDMRI 13)
Statistical Analysis of White Matter Integrity for the Clinical Study of Specifc
Language Impairment in Children
Emmanuel Vallée et al.

28 ｜ September 22

Estimating Uncertainty in White Matter Tractography Using Wild Non-Local
Bootstrap
Pew-Thian Yap et al

15:00 - 15:30

Coffee Break

15:30 - 17:00

Oral Session IV - Diffusion Modeling (CDMRI 13)
Fiberfox: An Extensible System for Generating Realistic White Matter Software
Phantoms
Peter Neher et al.

Uncertainty in Tractography via Tract Confidence Regions
Colin Brown

A Novel Riemannian Metric for Geodesic Tractography in DTI
Andrea Fuster et al.

Groupwise Deformable Registration of Fiber Track Sets using Track Orientation
Distributions
Daan Christiaens et al.

September 22 ｜ 29

M2CAI (08:30 – 12:30) – Room IB012
Modeling and Monitoring of Computer Assisted Interventions
http://twins.twmu.ac.jp/m2cai2013/
Organizers: Guang-Zhong Yang, Nicolas Padoy, Thomas Neumuth, Ken Masamune, Pierre Jannin,
Hiroshi Iseki, Gregory D. Hager, Stamatia Giannarou, Takashi Suzuki
08:30 - 08:35

Opening Remarks

08:35 - 09:25

Invited Talk 1
Surgical Workflow Analysis: Perceptual and Cognitive Factors
Guang-Zhong Yang

09:25 - 09:50

Presentation 1
Hierarchical approach for low-level surgical activity recognition

09:50 - 10:00

Short Discussion

10:00 - 10:20

Coffee Break

10:20 - 10:45

Presentation 2
Validation of a surgical process model regarding the robustness of missing sensor
information”

Christian Meißner, et al.

Philipp Liebmann, et al.

10:45 - 11:10

Presentation 3
Intraoperative Voice Classification for Analysis of Cortical Mapping during Awake
Surgery
Toshihiko Nishimura, et al.

11:10 - 11:35

Presentation 4
Automatic detection of electrical stimulation timing in operation videos of corticalmapping in awake brain surgery
Masanori Suganuma, et al.

11:35 - 12:25

Invited Talk 2
Workflow monitoring and room design by data gathering from a surgical room
Kiyoshi Izumi

12:25 - 12:30

30 ｜ September 22

Closing Remarks

September 22 ｜ 31

ABDI 2013 (08:30 – 17:05) – Room ES033
5th International Workshop on Abdominal Imaging: Computationaland Clinical Applications
http://www.abd-miccai.org/
Organizers: Hiro Yoshida, Simon Warfield, Michael Vannier
08:00 - 08:30

Registration

08:30 - 08:45

Opening Session (Moderators: Organizers)

08:45 - 09:15

Plenary Lecture 1 (Moderators: Hiro Yoshida)
Diffusion-weighted MRI analysis of Crohn’s disease
Simon Warfield

09:15 - 10:00

Colon and Other Gastrointestinal Tract - Crohn’s Disease

09:15 - 09:30

A model development pipeline for Crohn’ s disease severity assessment frommagnetic resonance images
Peter Schüffler

09:30 - 09:45

Spatially constrained incoherent motion (SCIM) model improves quantitative
diffusion-weighted MRI analysis of Crohn’s disease patients
Onur Afacan

09:45 - 10:00

Self similarity image registration based on reorientation of the HessianZhang Li

10:00 - 10:30

Coffee Break

10:30 - 12:30

Liver, Kidney, and Other Organs - Part 1

10:30 - 10:45

Free-Form registrationbrachytherapy MRI

involving

disappearing

structures:

applicationtoFloris Berendsen

10:45 - 11:00

Contour-based TVUS-MR image registration for mapping small endometrial
implants
Amir Yavariabdi

11:00 - 11:15

Rigid registration of untracked freehand 2D ultrasound sweeps to 3D CT of liver
tumours
Amalia Cifor

11:15 - 11:30

Fast renal cortex localization by combining generalized Hough transform andactive appearance models
Dehui Xiang

11:30 - 11:45

3D surface reconstruction of organs using patient specific shape priors in robotassisted laparoscopic surgery
Alborz Amir-Khalili

11:45 - 12:00

Multi-atlas and Gaussian mixture modeling based perirectal fat segmentation from
CT images
Soumya Ghose

32 ｜ September 22

12:00 - 12:15

Selective search and sequential detection for standard plane localization in
ultrasoundDong Ni

12:15 - 12:30

Rib detection in 3D MRI using dynamic programming based on vesselness andridgeness
Yolanda Noorda

12:30 - 13:30

Lunch

13:30 - 14:00

Plenary Lecture 2

13:30 - 14:00

Perfusion CT/MRI and their applications to liver and pancreatic diseases
Yoshihisa Tsujii

14:00 - 15:00

Liver, Kidney, and Other Organs - Part 2

14:00 - 14:15

Modeling and simulation of soft tissue deformation
Yuping Duan

14:15 - 14:30

A statistical shape model for multiple organs based on synthesized-based learning
Atsushi Saito

14:30 - 14:45

A generic, robust and fully-automatic workflow for 3D CT liver segmentation
Romane Gauriau

14:45 - 15:00

Tumor subtype-specific parameter optimization in a hybrid active surface modelfor hepatic tumor segmentation of 3D liver ultrasonograms
Myungeun Lee

15:30 - 17:00

Colon and Other Gastrointestinal Tract - Virtual Colonoscopy

15:30 - 15:45

Registration of prone and supine CT colonography datasets with differing
endoluminal distension

15:45 - 16:00

Global colon geometric structure analysis based on geodesics and conformal
flattening

Holger RothHao Peng

16:00 - 16:15

A classification-enhanced vote accumulation scheme for detecting colonic polyps
Suryakanth R Gurudu

16:15 - 16:30

A novel computer aided detection (CADe) scheme for colonic polyps based on the
structure decomposition
Huafeng Wang

16:30 - 16:45

Computer-aided detection of non-polypoid flat lesions in CT colonography:
observer performance study

16:45 - 17:00

Personalised estimation of the arterial input function for improved pharmacokinetic
modelling of colorectal cancer using dceMRI

Yasuji Ryu

Benjamin Irving

17:00 - 17:05

Closing Session (Moderators: Organizers)

September 22 ｜ 33

Poster Presentations
08:30 - 17:00

Colon and Other Gastrointestinal Tract - Poster
Registration of temporally separated CT colonography cases
Holger RothSpatial correspondence between prone and supine CT colonography images:
creating a reference standard
Thomas Hampshire

Application of synthetic sinogram based low-dose CT simulation and foldpreserving electronic cleansing technique for CT colonography
Chang Won Kim

Iterative reconstruction for ultra-low-dose laxative-free CT colonography
Synho Do

Computer-aided detection of colorectal lesions with super-resolution CT
colonography: pilot evaluation
Janne Nappi

Improved colon navigation for efficient polyp detection in virtual colonoscopy
Marwa Ismail

08:30 - 17:00

Liver, Kidney, and Other Organs - Poster
Adaptive confidence regions of motion predictions from population exemplar
modelsChristine Tanner

Use of tracer kinetic model-driven biomarkers for monitoring antiangiogenic
therapy of hepatocellular carcinoma in first-pass perfusion CT
Sang Ho Lee

Continuous-time flow-limited modeling by convolution area property anddifferentiation product rule in 4-phase liver dynamic contrast-enhanced CT
Sang Ho Lee

A survey of cervix segmentation methods in magnetic resonance images
Soumya Ghose

Multiphase liver registration from geodesic distance maps and biomechanicalmodelling
Jordan Bano

34 ｜ September 22

September 22 ｜ 35

MBIA 2013 (08:30 – 17:00) – Room IB013
3rd International Workshop on Multimodal Brain Image Analysis
http://www.iu.edu/~mbia/
Organizers: Li Shen, Tianming Liu, Pew-Thian Yap, Heng Huang, Dinggang Shen,
Carl-Fredrik Westin
08:30 - 08:45

Opening Remarks & Announcements

08:45 - 09:45

Keynote Speech
Joint modeling of anatomical and functional connectivity for population studies
Polina Golland

09:45 - 10:00

Invited Session (1 Talk)
Chair: TBD

Locally weighted multi-atlas construction
Junning Li, Yonggang Shi, Ivo D. Dinov, and Arthur W. Toga

10:00 - 10:30

Coffee Break

10:30 - 12:00

Oral Session 1 (6 Talks)
Chair: TBD

Assessing structural organization and functional interaction in gyral, sulcal andcortical networks
Xiaojin Li, Xintao Hu, Xi Jiang, Lei Guo, Junwei Han, and Tianming Liu

Quantification and analysis of large multimodal clinical image studies: application
to stroke
Ramesh Sridharan, Adrian V. Dalca, Kaitlin M. Fitzpatrick, Lisa Cloonan, Allison Kanakis, Ona Wu,
Karen L. Furie, Jonathan Rosand, Natalia S. Rost, and Polina Golland

Modeling 4D changes in pathological anatomy using domain adaptation: analysis
of TBI imaging using a tumor database
Bo Wang, Marcel Prastawa, Avishek Saha, Suyash P. Awate, Andrei Irimia, Micah C. Chambers,
Paul M. Vespa, John D. Van Horn, Valerio Pascucci, and Guido Gerig

Bi-modal non-rigid registration of brain MRI data based on deconvolution of joint
statistics
David Pilutti, Maddalena Strumia, Stathis Hadjidemetriou

Atlas based intensity transformation of brain MR images
Snehashis Roy, Amod Jog, Aaron Carass, and Jerry L. Prince

Use of diffusion tensor images in glioma growth modeling for radiotherapy target
delineation
Florian Dittmann, Björn Menze, Ender Konukoglu, and Jan Unkelbach

12:00 - 14:15

Lunch and Poster Session (including also Oral Papers, 24 in total)
Superpixel-based segmentation of glioblastoma multiforme from multimodal MR
imagesPo Su, Jianhua Yang, Hai Li, Linda Chi, Zhong Xue, and Stephen T. Wong36 ｜ September 22

Mapping dynamic changes in ventricular volume onto baseline cortical surfaces innormal aging, MCI, and Alzheimer’s disease
Sarah K. Madsen, Boris A. Gutman, Shantanu H. Joshi, Arthur W. Toga, Clifford R. Jack Jr.,
Michael W. Weiner, and Paul M. Thompson

Unsupervised fiber bundles registration using weighted measures geometricdemonsViviana Siless, Sergio Medina, Pierre Fillard, and Bertrand Thirion

Classification forests and Markov random field to segment chronic ischemic
infarcts from multimodal MRI
Jhimli Mitra, Pierrick Bourgeat, Jurgen Fripp, Soumya Ghose, Stephen Rose, Olivier Salvado, Alan
Connelly, Bruce Campbell, Susan Palmer, Gagan Sharma, Soren Christensen, Leeanne Carey,
and the START Research Team

Registration of brain CT images to an MRI template for the purpose of lesionsymptom mapping
Hugo J. Kuijf, J. Matthijs Biesbroek, Max A. Viergever, Geert Jan Biessels, and Koen L. Vincken

A dynamical clustering model of brain connectivity inspired by the N-body problem
Gautam Prasad, Josh Burkart, Shantanu H. Joshi, Talia M. Nir, Arthur W. Toga, and Paul M.
Thompson (Presenter: Yan Jin)

Cortical surface analysis of multi-contrast MR data to improve detection of cortical
pathology in multiple sclerosis
Marika Archambault-Wallenburg, Douglas Arnold, Sridar Narayanan, G. Bruce Pike, and D. Louis
Collins

PARP1 gene variation and microglial activity on [11C]PBR28 PET in older adults at
risk for Alzheimer’s disease
Sungeun Kim, Kwangsik Nho, Shannon L. Risacher, Mark Inlow, Shanker Swaminathan, Karmen
K. Yoder, Li Shen, John D. West, Brenna C. McDonald, Eileen F. Tallman, Gary D. Hutchins,
James W. Fletcher, Martin R. Farlow, Bernardino Ghetti, and Andrew J. Saykin

A graph-based integration of multimodal brain imaging data for the detection ofearly mild cognitive impairment (E-MCI)
Dokyoon Kim, Sungeun Kim, Shannon L. Risacher, Li Shen, Marylyn D. Ritchie, Michael W.
Weiner, Andrew J. Saykin, and Kwangsik Nho, for the Alzheimer’s Disease Neuroimaging Initiative(ADNI)

14:15 - 15:00

Invited Session (3 Talks)
Chair: TBD

Whole brain functional connectivity using multi-scale spatio-spectral random
effects model
Hakmook Kang, Xue Yang, Frederick W Bryan, Christina M Tripp, and Bennett A. Landman

Modeling cognitive processes via multi-stage consistent functional response
detection
Jinglei Lv, Dajiang Zhu, Xi Jiang, Kaiming Li, Xintao Hu, Junwei Han, Lei Guo, and Tianming Liu

Bivariate genome-wide association study of genetically correlated neuroimaging
phenotypes from DTI and MRI through a Seemingly Unrelated Regression model
Neda Jahanshad, Priya Bhatt, Derrek P. Hibar, Julio E. Villalon, Talia M. Nir, Arthur W. Toga,
Clifford R. Jack Jr., Matt A. Bernstein, Michael W. Weiner, the Alzheimer’s Disease Neuroimaging
Initiative (ADNI), Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright,
and Paul M. Thompson

September 22 ｜ 37

15:00 - 15:30

Coffee Break

15:30 - 16:45

Oral Session 2 (5 Talks)
Chair: TBD

Network-guided sparse learning for predicting cognitive outcomes from MRI
measures
Jingwen Yan, Heng Huang, Shannon L. Risacher, Sungeun Kim, Mark Inlow, Jason H. Moore,
Andrew J. Saykin, and Li Shen, for the Alzheimer’s Disease Neuroimaging Initiative

A framework to compare tractography algorithms based on their performance inpredicting functional networks
Fani Deligianni, Christopher A. Clark, and Jonathan D. Clayden

Multi-modal surface-based alignment of cortical areas using intra-cortical T1
contrast
Christine Lucas Tardif, Juliane Dinse, Andreas Schäfer, Robert Turner, and Pierre-Louis Bazin

A Heat Kernel based Cortical Thickness Estimation Algorithm
Gang Wang, Xiaofeng Zhang, Qingtang Su, Jiannong Chen, Lili Wang, Yunyan Ma, Qiming Liu,
Liang Xu, Jie Shi, and Yalin Wang

A family of fast spherical registration algorithms for cortical shapes
Boris A. Gutman, Sarah K. Madsen, Arthur W. Toga, and Paul M. Thompson

16:45 - 17:00

38 ｜ September 22

Award announcement and closing remarks

September 22 ｜ 39

MIAR 2013 (08:30 – 16:55) – Noyori Conference Hall
The 6th International Workshop on Medical Imaging andAugmented Reality
http://www.miar.org/2013/
Organizers: Ken Masamune, Guoyan Zheng, Hongen Liao, Terry Peters, Cristian Linte
08:00 - 08:30

Registration, Speaker Check-in and Poster Setup

08:30 - 08:35

Welcome & Opening Remarks

08:35 - 09:20

Keynote Address:
Patient-based Augmented Reality and Bio-texture manufacturing for Minimally
Invasive and Robotic Surgery
Maki Sugimoto

09:20 - 10:00

Oral Session I: Augmented Reality, Visualization and Simulation
An Augmented Reality Approach for Initializing 2D/3D Registration
Ren Hui Gong

Volume Visualization for Neurovascular Augmented Reality
Marta Kersten-Oertel

10:00 - 10:30

Coffee Break & Poster Viewing

10:30 - 12:10

Oral Session II: Image-guided Interventions: Planning,
Real-time Marker-free Patient Registration and Image-based Navigation Using
Stereovision for Dental Surgery
Junchen Wang

Simultaneous Tracking, 3D Reconstruction and Deforming Point Detection for
Stereoscope Guided Surgery
Bingxiong Lin

Planning of Middle Hepatic Vein-Guided Hemihepatectomy: Resection Pathway
Construction and Optimization
Wenyu Chen

Real-time Wide-baseline Registration of the Uterus in Monocular Laparoscopic
VideosToby Collins

Registration of Preoperative Liver Model for Laparoscopic Surgery from
Intraoperative 3D Acquisition
Jordan Bano

12:10 - 12:30

Poster Teasers

12:30 - 13:30

Lunch & Poster Session
Simultaneous Tensor and Fiber Registration (STFR) for Diffusion Tensor Imagesof the Brain
Zhong Xue and Stephen TC Wong40 ｜ September 22

Segmentation of 3D transesophageal echocardiograms by multi-cavity active
shape model and gamma mixture model
Alexander Haak, Gonzalo Sanchez-Ferrero, Harriet Mulder, Hortense Kirisli, Nora Baka, CoertMetz, Stefan Klein, Ben Ren, Josien Pluim, Theo van Walsum, and Johan Bosch

Automatic and Real-time Identification of Breathing Pattern from Ultrasound Liver
ImagesJiaze Wu, Yanling Chi, Cheng Li, Bien Soo Tan, London Lucien Ooi, Satheesh Ramamurthy and
Jimin Liu

Hybrid Multimodal Deformable Registration with a Data-Driven Deformation Prior
Yongning Lu, Ying Sun , Rui Liao and Sim Heng Ong

Cascaded Shape Regression for Automatic Prostate Segmentation from
Extracorporeal Ultrasound Images
Jierong Cheng, Wei Xiong, Ying Gu, Shue Ching Chia and Yue Wang

Evaluation of endoscopic image enhancement for feature tracking: a new
validation frameworkFaïçal Selka, Stephane Nicolau, Vincent Agnus, Luc Soler, Abdel Haffid Bessaid and Jacques
MarescauxIntensity-based 3D-2D Mesh-to-Image Registration Using Mesh-based Digitally
Reconstructed Radiography
Shun Miao, Tri Huynh, Cyprien Adnet, Thomas Legris, Marcus Pfister and Rui Liao

Toward Accurate and Robust 2-D/3-D Registration of Implant Models to Singleplane Fluoroscopy
Shun Miao, Rui Liao, Joseph Lucas and Christophe Chefd’hotel

Surface Reconstruction from Tracked Endoscopic Video Using the Structure from
Motion Approach
Deyu Sun, Jiquan Liu, Cristian A. Linte, Huilong Duan and Richard A. Robb

A Bayesian Approach for Construction of Sparse Statistical Shape Models Using
Dirichlet Distribution
Ali Gooya, Elaheh Mousavi, Christos Davatzikos and Hongen Liao

Brain-Cloud: A Generalized and Flexible Registration Framework for Brain MR
Images
Minjeong Kim, Guorong Wu, Qian Wang and Dinggang Shen

Quantized Local Edge Distribution: A Descriptor for B-mode Ultrasound Images
Wing Yin Chan, Yim Pan Chui and Pheng Ann Heng

Reinforcement Learning based Model Selection and Parameter Estimation for
Pharmacokinetic Analysis in Drug Selection
Fei Gao, Jingjia Xu, Huafeng Liu and Pengcheng Shi

Delineating 3D Angiogenic Sprouting in OCT Images via Multiple Active Contours
Ting Xu, Fengqiang Li, Duc-Huy T. Nguyen, Christopher S. Chen, Chao Zhou and Xiaolei Huang

The Role of Augmented Reality in Training the Planning of Brain Tumor Resection
Kamyar Abhari, Roy Eagleson, John Baxter, Elvis Chen, Ali Kahn, Terry Peters and Sandrine deRibaupierre

September 22 ｜ 41

Matching Functional Connectivity Patterns for Spatial Correspondence Detection
in fMRI Registration
Zhenyu Tang, Di Jiang, Hongming Li and Yong Fan

13:30 - 14:20

Keynote Address
Surgical Process Modeling for Intelligent CAI: Methods and Applications
Pierre Jannin

14:20 - 15:00

Oral Session III: Robotic Applications in Computer-Assisted Interventions
3D Robotic Catheter Shape Reconstruction and Localisation using Appearance
Priors and Adaptive C-arm Positioning
Alessandro Vandini

Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy:
A Phantom Study
Alborz Amir-Khalili

15:00 - 15:30

Coffee Break & Poster Viewing

15:30 - 16:30

Oral Session IV: Ultrasound Enhanced Image-guided procedures
Ultrasound Image-guided Mapping of Endoscopic Views on a 3D Placenta Model:
A Tracker-less Approach
Liangjing Yang

Towards CT Enhanced Ultrasound Guidance for Off-pump Beating Heart Mitral
Valve Repair
Feng Li

Calibration and stereo tracking of a laparoscopic ultrasound transducer foraugmented reality in surgery
Philip Edgcumbe

16:30 - 16:55

Discussion & AE-CAI Panel

16:55 - 17:00

Closing Remarks

42 ｜ September 22

September 22 ｜ 43

SMMIA (14:00 – 17:30) – Room ES035
Stochastic Modeling for Medical Image Analysis
https://louisville.edu/speed/bioengineering/faculty/bioengineering-full/dr-ayman-el-baz/miccai-tutorial.html
Organizers: Ayman El-Baz, Georgy Gimel’farb
14:00 - 14:15

Introduction
Ayman EI-Baz

14:15 - 14:45

Appearance models based on precise unsupervised learning of a mixture ofpseudo-distributions approximating an empirical marginal probability distribution of
pixel/voxel intersites
Ayman EI-Baz

14:45 - 15:30

Visual appearance models based on analytic learning of second- or higher-ordernon-parametric Markov-Gibbs random fields
Georgy Gimel’farb

15:30 - 15:45

Coffee Break

15:45 - 16:05

Shape Models of Objects-of-Interest
Ayman EI-Baz

16:05 - 16:25

Application I
Improving full-cardiac cycle strain estimation from tagged CMR by accurate
modeling of 3D image appearance characteristics
Matthew Nitzken

16:25 - 16:50

Application II
Dynamic contrast-enhanced MRI-based early detection of acute renal transplant
rejection
Fahmi Khalifa

16:50 - 17:15

Application III
MAP-based framework for segmentation of MR brain images based on visualappearance and prior shape
Amir Alansary and Ahmed Soliman

17:15 - 17:30

44 ｜ September 22

Closing Remarks

September 22 ｜ 45

IAAMI 2013 (08:30 – 12:30) – Room ES035
Introduction to Analysis and Applications of Molecular Imaging
http://phd.gccis.rit.edu/feigao/IAAMI2013/Site_2/Home.html
Organizers: Fei Gao, Kuangyu Shi
08:30 - 09:15

Lecture 1
Introduction to Drug Development Using Molecular Imaging

09:15 - 10:00

Lecture 2
Image Reconstruction/ New Molecular Imaging Techniques

Hideo Tsukada

Sibylle Ziegler

10:00 - 10:45

Poster Show
Coffee Break

10:45 - 11:30

Lecture 3
Introduction to Principles of Molecular Imaging
Takaji Yamashita

11:50 - 12:30

Lecture 4
Overview of Clinical Applications in Neurology, Oncology and Cardiology
Stefan Forster

46 ｜ September 22

September 22 ｜ 47

VTR 2013 (09:00 – 17:30) – Room ES023
Visual tracking and 3D reconstruction for computer assisted
interventions: state-of-the-art and challenges
http://www.lapix.ufsc.br/TutorialMiccai2013/
Organizers: Rogerio Richa, Raphael Sznitman, Sandrine Voros
09:00 - 09:15

Introduction

09:15 - 10:45

Morning Session #1

09:15 - 10:00

Surgical Vision: Instrument Detection and Model Based Localization
Danail Stoyanov

10:00 - 10:45

Shape-from-Template in Gynecologic Laparoscopy
Adrien Bartoli

10:45 - 11:00

Coffee Break

11:00 - 12:30

Morning Session #2

11:00 - 11:45

Quantitative Endoscopy
Gregory Hager

11:45 - 12:30

Towards a decrease of the delay between laboratory innovations and their clinicalevaluation
Alexandre Moreau-Gaudry

12:30 - 14:00

Lunch Break

14:00 - 15:30

Afternoon Session #1

14:00 - 14:45

Comparative assessment of optical techniques for 3D surface reconstruction inlaparoscopic surgery
Lena Maier-Hein

14:45 - 15:30

Utility of Multi-view Camera System for Navigation Surgery
Naoki Suzuki

15:30 - 15:45

Coffee Break

15:45 - 17:15

Afternoon Session #2

15:45 - 16:30

A model-based approach for tool tracking in laparoscopy: Potential applications
and challenges linked to the approach’s evaluation
Sandrine Voros

16:30 - 17:15

View expansion and augmented reality in slit-lamp retinal imaging
Rogerio Richa

17:15 - 17:30

48 ｜ September 22

Closing Remarks

September 22 ｜ 49

DTIChallenge (08:00 – 17:00) – Room ES021
MICCAI DTI Tractography Challenge on Peritumoral White Matter
Anatomy for Neurosurgical Decision-Making
http://dti-challenge.org/
Organizers: Sonia Pujol, Ron Kikinis, Alexandra Golby, Arya Nabavi, Guido Gerig, Martin Styner,
William Wells, Carl-Fredrik Westin, Laurent Chauvin, Carlo Pierpaoli
08:00 - 09:30

On-Site DTI Challenge
Tractography Analysis of Neurosurgical Cases by Participating Teams

08:45 - 09:15

The MICCAI DTI Tractography Challenge, Opening Remarks and Introduction
Sonia Pujol

09:15 - 09:30

Neurosurgical Cases Presentation
Sonia Pujol

09:30 - 10:15

Keynote Lecture
Anatomical Accuracy of Diffusion MRI Tractography and Connectivity
Carlo Pierpaoli

10:15 - 11:00

DTI Tractography Session - Part 1
Tracking Corticospinal Tract with Diffusion Tensor Field Replacement forCancelling Crossing with Superior Longitudinal Fasciculus
Yoshitaka Masutani, Yuichi Suzuki, Kenji Ino

Improving White Matter Tractography by Resolving the Challenges of Edema
Jérémy Lecoeur, Emmanuel Caruyer, Luke Macyszyn, Ragini Verma

Tractography of the Corticospinal and Peritumoral Tracts of Three Patients
Ye Li, Xiaolei Chen

Tensor Deflection Tractography
Neurosurgical Planning

using

Local

Fibre-Crossing

Maps

for

Ali R. Khan, Maged Goubran, Jonathan C. Lau, Roy Eagleson, Terry M. Peters, Sandrine deRibaupierre

Tracking the Cortico-Spinal Tract from Low Spatial and Angular Resolution
Diffusion MRI
Aymeric Stamm, Olivier Commowick, Patrick Perez, Christian Barillot

11:00 - 11:15

Coffee Break

11:15 - 12:00

DTI Tractography Session - Part 2
Performance Evaluation of Default Module for Interactive Tractography Seeding
Manuba Tamura, Yoshiyuki Konishi, Takashi Suzuki

Local Atlas-based Adaptive Fiber Tracking
Jan Klein, Monique Meuschke, Benjamin Geisler, Horst K. Hahn

DTI Tractography Challenge 2013 - MITK Global TractographyPeter F. Neher, Bram Stieltjes, Klaus H. Fritzsche

Anatomically Driven Corticospinal Tractography with UKF Tool and WMQL
Eun Young Kim, Joy Matsui, Hans Johnson

50 ｜ September 22

ICA-based Multi-Fiber DWI Tractography in Neurosurgical Planning
Sinchai Tsao, Niharika Gajawelli, Peter A. Michels, Darryl Hwang, Yi Lao, Fernando Yepes, Vidya
Rajagopalan, Meng Law, Natasha Lepore

12:00 - 13:00

Lunch Break

13:00 - 14:15

A View from the Clinic: The Neurosurgeon’ s Perspective on DTI
Tractography

14:15 - 15:15

Review Session of On-Site Challenge Cases

15:15 - 15:30

Coffee Break

15:30 - 15:45

Neurosurgical Cases Results

Arya Nabavi, Yoshihiro Muragaki, Yasukazu Kajita, Luke Macyszyn, Sandrine de Ribaupierre

Sonia Pujol

15:45 - 17:00

Panel Discussion with Teams and Jury Members: DTI Challenge Outcomesand Future Directions

September 22 ｜ 51

ASPS-BRATS (09:00 – 17:00) – Room ES022
NCI-MICCAI 2013 Challenges: Automated Segmentation of
Prostate Structures (ASPS) and Multiparametric Brain Tumor
Segmentation
https: //wiki. cancerimagingarchive. net/display/Public/NCI-MICCAI + 2013 + Grand + Challenges + in +Image+Segmentation
http://martinos.org/qtim/miccai2013/
Organizers: Stephen Aylward, Nicolas Bloch, Larry Clarke, Andinet Enquobahrie,
Keyvan Farahani, John Freymann, Elizabeth Gerstner, Henkjan Huisman, Carl Jaffe,
Jayashree Kalpathy-Cramer, Justin Kirby, Anant Madabhushi, Bjoern Menze, Mauricio Reyes,
Mirabela Rusu
09:00 - 09:15

Introduction, Release of Testing Datasets

09:15 -Start of On-Site Competition

10:30 - 11:00

Coffee Break

11:00 - 12:00

Invited Talks
The Cancer Imaging Archive (TCIA), QIN challenge efforts and available
resources
Jayashree Kalpathy-Cramer

Aftermath analysis of Brain Tumor Segmentation Challenge 2012 (BRATS2012)
Mauricio Reyes

12:00 - 12:00

Results Preparation and Final Upload

13:00 - 15:00

Lunch and Poster Session

15:00 - 16:00

Short Oral Presentation by Participants

16:00 - 17:00

Challenge Results, Discussions and Wrap-up

Accepted Papers BRATS 2013
A Grouping Artificial Immune Network for Segmentation of Tumor Images
Patricia Buendia, Thomas Taylor, Michael Ryan, Nigel John

Patch-based Segmentation of Brain Tissues.
Nicolas Cordier, Bjoern Menze, Herve Delingette, Nicholas Ayache

Fully Automatic Brain Tumor Segmentation from Multiple MR Sequences using Hidden Markov
Fields and Variational EM
S. Doyle , F. Vasseur , M. Dojat , and F. Forbes

Automatic Brain Tumor Segmentation of Multi-sequence MR images using Random Decision
Forests
Joana Festa, Sérgio Pereira, José António Mariz, Nuno Sousa, Carlos A. Silva

Semi-automatic Segmentation of Multimodal Brain Tumor Using Active Contours
Xiaotao Guo, Binsheng Zhao

52 ｜ September 22

A Hybrid Model for Multimodal Brain Tumor Segmentation
Raphael Meier, Stefan Bauer, Johannes Slotboom, Roland Wiest, and Mauricio Reyes

Multi-class Abnormal Brain Tissue Segmentation Using Texture Features
S. Reza and K. M. Iftekharuddin

Map-Reduce Enabled Hidden Markov Models for High Throughput Multimodal Brain Tumor
Segmentation
Thomas Taylor, Nigel John, Patricia Buendia, Michael Ryan

ANTs and _Arboles.
Nick Tustison, Max Wintermark, Chris Durst, and Brian Avants

Automatic Brain Tumor Segmentation with MRF on Supervoxels.
Liang Zhao, Duygu Sarikaya, and Jason J.Corso

September 22 ｜ 53

AMIDA 13 (9:00 – 12:30) – Room ES024
MICCAI Grand Challenge: Assessment of Mitosis Detection
Algorithms 2013
http://amida13.isi.uu.nl/
Organizers: Mitko Veta, Max A. Viergever, Josien P.W. Pluim, Nikolaos Stathonikos,
Paul J. van Diest
09:00

Opening

09:30

Presentations of the proposed methods by the challenge participants

11:30

Presentation of the overall results by the organizers

12:00

Discussion

54 ｜ September 22

September 22 ｜ 55

Program of MICCAI 2013
Workshops, Challenges
and Tutorials
September 26

56

Location Maps for Thursday September 26

September 26 ｜ 57

58 ｜ September 26

September 26 ｜ 59

CSI 2013 (08:50 – 17:15) – Room ES034
MICCAI 2013 workshop on Computational Methods and ClinicalApplications for Spine Imaging
http://www.digitalimaginggroup.ca/members/Shuo/spine/MICCAIWorkshop.html
Organizers: Jianhua Yao, Tobias Klinder, Aly A. Farag, Shuo Li
08:50 - 09:00

Opening Session

09:00 - 09:45

Invited Talk I
Chair: Shuo Li

Clinical indications and pitfalls of intraoperative 3D-image/ O-arm basednavigation system
Tokumi Kanamura

09:45 - 10:45

Segmentation I (CT)
Chair: TBD

2D-PCA based Tensor Level Set Framework for Vertebral Body Segmentation
Ahmed Shalaby, Aly Farag, Melih Aslan

Segmentation of vertebrae from 3D spine images by applying concepts fromtransportation and game theories
Bulat Ibragimov, Bostjan Likar, Franjo Pernus, Tomaž Vrtovec

Automatic and Reliable Segmentation of Spinal Canals in Low-Resolution, LowContrast CT Images,
Qian Wang, Le Lu, Diji Wu, Noha El-Zehiry, Dinggang Shen, Kevin Zhou

A Robust Segmentation Framework for Spine Trauma Diagnosis
Poay Hoon Lim, Ulas Bagci, Li Bai

10:45 - 11:00

Break

11:00 - 12:15

Computer Aided Detection and Diagnosis
Chair: TBD

Computer Aided Detection of Spinal Degenerative Osteophytes on Sodium
Fluoride PET/CT
Jianhua Yao, Hector Munoz , Joseph Burns, Le Lu, Ronald Summers

Novel Morphological and Appearance Features for Predicting Physical Disability
from MR Images in Multiple Sclerosis Patients
Jeremy Kawahara, Chris McIntosh, Roger Tam, Ghassan Hamarneh

Classification of Spinal Deformities using a Parametric Torsion Estimator
Jesse Shen, Stefan Parent, Samuel Kadoury

Lumbar Spine Disc Herniation Diagnosis with a Joint Shape Model
Raja Alomari, Vipin Chaudhary, Jason Corso, Gurmeet Dhillon

Epidural Masses Detection on Computed Tomography Using SpatiallyConstrained Gaussian Mixture Models
Sanket Pattanaik, Jiamin Liu, Jianhua Yao, Weidong Zhang, Evrim Turkbey, Xiao Zhang, Ronald
Summers
60 ｜ September 26

12:15 - 13:15

Lunch Break

13:15 - 14:00

Invited Talk II
Chair: TBD

Prototyping applications with tracked ultrasound for spine imaging andinterventions
Gabor Fichtinger

14:00 - 15:00

Quantitative Imaging
Chair: Jianhua Yao

Comparison of manual and computerized measurements of sagittal vertebral
inclination in MR imagesTomaž Vrtovec, Franjo Pernus, Bostjan Likar

Eigenspine: Eigenvector Analysis of Spinal Deformities in Idiopathic Scoliosis
Daniel Forsberg, Claes Lundström, Mats Andersson, Hans Knutsson

Quantitative Monitoring of Syndesmophyte Growth in Ankylosing Spondylitis
Using Computed Tomography
Sovira Tan, Jianhua Yao, Lawrence Yao, Michael Ward

A Semi-automatic Method for the Quantification of Spinal Cord Atrophy
Simon Pezold, Michael Amann, Katrin Weier, Ketut Fundana, Ernst Radue, Till Sprenger, Philippe
Cattin

15:00 - 15:15

Break

15:15 - 16:00

Segmentation II (MR)
Chair: TBD

Multi-modal vertebra segmentation from MR Dixon in hybrid whole-body PET/MR
Christian Buerger, Jochen Peters, Irina Waechter-Stehle, Frank Weber, Tobias Klinder, Steffen
RenischSegmentation of intervertebral discs from high-resolution 3D MRI using multi-levelstatistical shape models
Ales Neubert, Jurgen Fripp, Craig Engstrom, Stuart Crozier

A supervised approach towards segmentation of clinical MRI for automatic lumbar
diagnosis
Subarna Ghosh, Manavender Malgireddy, Vipin Chaudhary, Gurmeet Dhillon

16:00 - 16:45

Registration/Labeling
Chair: TBD

Automatic Segmentation and Discrimination of Connected Joint Bones from CT by
Multi-atlas Registration
Tristan Whitmarsh, Graham Treece, Kenneth Poole

Registration of MR to Percutaneous Ultrasound of the Spine for Image-Guided
SurgeryLars Eirik Bø, Rafael Palomar, Tormod Selbekk, Ingerid Reinertsen

Vertebrae Detection and Labelling in Lumbar MR Images
Meelis Lootus, Timor Kadir, Andrew Zisserman

16:45 - 17:15

Discussion
Chair: TBD

September 26 ｜ 61

Commercialization
Common data sets and challenges
Best Paper award

62 ｜ September 26

September 26 ｜ 63

MeshMed 2013 (09:00 – 17:10) – Room IB013
MICCAI 2013 Workshop on Mesh Processing in Medical Image
Analysis
http://www2.imm.dtu.dk/projects/MeshMed//
Organizers: Joshua A. Levine, Rasmus R. Paulsen, Yongjie Zhang
09:00 - 09:05

Welcome09:05 - 09:50

Invited Plenary Talk
Hervé Delingette

09:50 - 10:10

Volumetric Anatomical Parameterization and Meshing for Inter-patient Liver
Coordinate System Definition.

10:10 - 10:30

Analysis of Surface Folding Patterns of Diccols using the GPU-Optimized
Geodesic Field Estimate

Sergio Vera, Miguel Ángel González Ballester and Debora Gil

Anirban Mukhopadhyay, Chul Woo Lim, Suchendra Bhandarkar, Hanbo Chen, Tianming Liu,
Khaled Rasheed and Thiab Taha

10:30 - 11:00

Coffee Break

11:00 - 11:50

Invited Plenary Talk

11:50 - 12:10

Finite Element Model for Patient-Specific Functional Simulations of Cochlear
Implants

Kenji Shimada

Mario Ceresa, Hans Martin Kjer, Sergio Vera, Noemí Carranza, Frederic Perez, Livia Barazzetti,
Pavel Mistrik, Anandhan Dhanasingh, Marco Caversaccio, Martin Stauber, Mauricio Reyes,
Rasmus R. Paulsen and Miguel Angel González-Ballester

12:10 - 12:30

Cochlear Finite
Deformations

Element

Modelling:

Mesh

Quality

Under

SSM-Driven

Hans Martin Kjer, Mario Ceresa, Noemí Carranza, Sergio Vera, Frederic Perez, Livia Barazzetti,
Mauricio Reyes, Miguel Angel González-Ballester and Rasmus R. Paulsen

12:30 - 14:00

Lunch

14:00 - 14:50

Invited Plenary Talk
Leo Grady

14:50 - 15:10

A Family of Fast Spherical Registration Algorithms for Cortical Shapes
Boris Gutman, Sarah Madsen, Arthur Toga and Paul Thompson

15:10 - 15:30

TBA

15:30 - 16:00

Coffee Break

16:00 - 16:20

Adaptive Mesh Reconstruction in X-Ray Tomography
Fanny Buyens, Michele Quinto and Dominique Houzet

16:20 - 16:40

Image to Mesh: Spinal Ligament 2D Surface Models from Bone Volume Images
and Dynamic Radiographs
Md. Abedul Haque and G. Elisabeta Marai

64 ｜ September 26

16:40 - 17:10

Best Paper Prize, Discussion, and Workshop Closing

September 26 ｜ 65

SACAI 2013 (09:30 – 16:00) – Room ES024
MICCAI 2013 workshop on Systems and Architectures for
Computer Assisted Interventions
https://smarts.lcsr.jhu.edu/dokuwiki/doku.php?id=event:miccai.workshop.2013
Organizers: Kiyoyuki Chinzei, Nobuhiko Hata, Peter Kazanzides, Rajesh Kumar,
Andinet Enquobahrie, Stefan Bohn, Oliver Burgert
09:30 - 09:45

Welcome Remarks

09:45 - 10:45

Session 1: Architectures

09:45 - 10:05

Simple and Affordable Trial Package and Software Development Kit for ORFriendly CAI Systems
K.Chinzei, E. Kobayashi, T. Suzuki, J.Yamashita and Y. Yamauchi

10:05 - 10:25

System monitoring and diagnostics architecture for networked medical devices
S. Bohn, M. Leßnau, O. Burgert and T. Neumuth

10:25 - 10:45

A Lightweight and Portable Communication Framework for Multimodal ImageGuided Therapy

10:45 - 11:00

Break

11:00 - 11:40

Session 2: Integration

11:00 - 11:20

Steps towards the Integration of Model Guided Therapy Systems into the
Healthcare Environment

11:20 - 11:40

An Open-Source Hardware and Software Platform for Telesurgical Robotics
Research

A. Schoch, B. Fuerst, F. Achilles, S. Demirci and N. NavabO. Burgert and C. Thies

Z. Chen, A. Deguet, S. DiMaio, G. Fischer and P. Kazanzides

13:30 - 14:10

Invited Speech
Patient-based bio-texture modeling using 3D printer and open-source application
OsiriX in surgical simulation and navigation
Maki Sugimoto

14:10 - 14:50

Session 3: Applications

14:10 - 14:30

Perspectives on Image-Guided Transapical Beating Heart Aortic Valve
Intervention
M. Karar

14:30 - 14:50

Skull Base Surgery Navigation System Based on Updating Preoperative Images
Using Positional Information of Surgical Tools
Y. Hayashi, M. Fujii, Y. Kajita, T. Wakabayashi and K. Mori

14:50 - 15:10

Break

15:10 - 16:00

Session 4: Hands-on Session
TBA

16:00 66 ｜ September 26

ClosingSeptember 26 ｜ 67

MCV (08:30 – 17:00) – IB Lecture HallMICCAI 2013 workshop on Medical Computer Vision
http://www.medicalcomputervision.org/
Organizers: Bjoern Menze, Georg Langs, Albert Montillo, Michael Kelm, Henning Mueller,
Zhuowen Tu
08:30 - 10:00

Morning Oral Session 1
Session 1: Registration
Local regression learning via forest classification for 2D/3D deformable registration
Chen-Rui Chou and Stephen Pizer

Semi-supervised learning of nonrigid deformations for image registration
John Onofrey, Lawrence Staib and Xenophon Papademetris

Session 2: Segmentation
White matter supervoxel segmentation by axial DP-means clustering
Ryan Cabeen and David Laidlaw

Integrated spatio-temporal segmentation of longitudinal brain tumor imaging
studies
Stefan Bauer, Jean Tessier, Oliver Krieter, Lutz-P. Nolte and Mauricio Reyes

Semantic context forests for learning-based knee cartilage segmentation in 3D MR
image
Quan Wang, Dijia Wu, Le Lu, Meizhu Liu, Kim Boyery and Kevin Zhou

10:00 - 10:30

Coffee Break

10:30 - 12:00

Morning Oral Session 2
Invited talk
Leo Grady

Session 3: Short Talk Session
Short talks of papers presented during lunch time poster session
12:00 - 13:30

Lunch Time Poster Session
Computer aided diagnosis using multilevel image features on large-scaleevaluation
Le Lu, Pandu Devarakota, Siddharth Vikal, Dijia Wu, Yefeng Zheng and Matthias Wolf

Pectoral muscle detection in digital breast tomosynthesis and mammography
Florin Ghesu, Michael Wels, Anna Jerebko, Michael Suhling, Joachim Hornegger and Michael
Kelm

Flexible architecture for streaming and visualization of large virtual microscopy
imagesGerman Corredor, Marcela Iregui, Viviana Arias and Eduardo Romero

2D-based 3D volume retrieval using singular value decomposition of detected
regions
Alba Seco de Herrera, Antonio Foncubierta Rodriguez, Emanuele Schiavi and Henning Muller

A novel shape feature descriptor for the classification of polyps in HD colonoscopy
Michael Hafner, Andreas Uhl and Georg Wimmer
68 ｜ September 26

Automatic aorta detection in 3D cardiac CT images using Bayesian tracking
methodMingna Zheng, Jeffery Carr and Yaorong Ge

Shape Curvature Histogram: a shape feature for celiac disease diagnosis
Michael Gadermayr, Michael Liedlgruber, Andreas Uhl and Andreas Vecsei

Feature extraction with intrinsic distortion correction in celiac disease imagery: noneed for rasterization
Michael Gadermayr, Andreas Uhl and Andreas Vecsei

Robust mixture-parameter estimation for unsupervised segmentation of brain MR
imagesAlfiia Galimzianova, Tiga Spiclin, Bostjan Likar and Franjo Pernus

2D-PCA shape models: application to 3D reconstruction of the human teeth from asingle image
Aly Abdelrehim, Aly Farag, Ahmed Shalaby and Moumen El-Melegy

Accurate whole-brain segmentation for Alzheimer’ s disease combining an
adaptive statistical atlas andmulti-atlas
Zhennan Yan, Shaoting Zhang, Xiaofeng Liu, Dimitris Metaxas, Albert Montillo and AIBL

Local phase-based fast ray features for automatic left ventricle apical view
detection in 3D echocardiography
Joao Domingos, Eduardo Lima, Paul Leeson and Alison Noble

13:30 - 15:00

Afternoon Oral Session 1
Invited talk
Ron Kikinis

Session 4: Detection and Localization
Class-specific regression random forest for accurate extraction of standard planes
from 3D echocardiography
Kiryl Chykeyuk and Alison Noble

Organ localization using joint AP/LAT view landmark consensus detection andhierarchical active appearance models
Qi Song, Albert Montillo, Roshni Bhagalia and Srikrishnan

15:00 - 15:30

COFFEE BREAK

15:30 - 17:00

AFTERNOON ORAL SESSION 2
Session 5: VISCERAL Session
Information about VISCERAL whole-body annotation benchmark (www.visceral.
eu)
Invited short talks from benchmark participants MCV Best Paper Award sponsoredby Siemens Corporate Technology Adjourn

September 26 ｜ 69

BIV-PCS (08:30 – 12:00) – Room ES023
MICCAI 2013 workshop on Bio-Imaging and Visualization for
Patient-Customized Simulations
https://sites.google.com/site/mwbivpcs/
Organizers: João Manuel R. S. Tavares, Xiongbiao Luo, Shuo Li
08:30 - 08:45

Opening Remarks & Annoucements

08:45 - 10:15

Oral Presentation I
A Novel Colon Wall Flattening Model for Computed Tomographic Colonography:
Method and Validation
Huafeng Wang, Lihong Li, Hao Han, Yunhong Wang, Weifeng Lv, Xianfeng Gu and Zhengrong
Liang

Biomechanical Simulation of Lung Deformation from One CT Scan
Feng Li, Fatih Porikli

2D-3D Registration: A Step towards Image-Guided Ankle Fusion
Ahmed Shalaby, Eslam Mostafa, Todd Hockenbury, Aly Farag

A Graph Based Methodology for Volumetric Left Ventricle Segmentation
Sarada Dakua, Abdulla Al-Ansari, Julien Abi-Nahed

Minimally Interactive MRI Segmentation for Subject-Specific Modelling of the
Human Tongue
Negar M. Harandi, Rafeef Abugharbieh, Sidney Fels

Real-time and Accurate Endoscope Electromagnetic Tracking via Marker-freeRegistration Based on Endoscope Tip Center
Xiongbiao Luo, Kensaku Mori

10:15 - 10:30

Coffee Break

10:30 - 11:45

Oral Presentation II
Evaluation of Image Guided Robot Assisted Surgical Training for Patient Specific
Laparoscopic Surgery
Tao Yang, Kyaw Kyar Toe, Chin Boon Chng, Weimin Huang, Chee Kong Chui, Jiang Liu, Kin Yong
Chang

Proxemics Measurement During Social Anxiety Disorder Therapy Using a RGBD
Sensors Network
Julien Leroy, Francois Rocca, Bernard Gosselin

How do Sex, Age, and Osteoarthritis Affect Cartilage Thickness at the Thumb
Carpometacarpal Joint? Insights from Subject-Specific Cartilage Modeling
Eni Halilaj, David Laidlaw, Douglas Moore, Joseph Crisco

Patient Specific Modeling of Pectus Excavatum for the Nuss Procedure Simulation
Krzysztof Rechowicz, Mohammad Obeid, Frederic McKenzie

Estimating Pedicle Screw Fastening Strength via a Virtual Templating Platform for
Spine Surgery Planning: A Retrospective Clinical Study
Cristian Linte, David Holmes III

70 ｜ September 26

11:45 - 12:00

Award Announcement, Panel Discussion, and End of Session

September 26 ｜ 71

STACOM ’13 (09:00 – 17:30) – Room IB015
4th International Workshop on Stastical Atlases andComputational Models of the Heart
http://www.cardiacatlas.org/web/stacom2013
Organizers: Alistair Young, Oscar Camara, Tommaso Mansi, Mihaela Pop, Kawal Rhode,
Maxime Sermesant
09:00 - 09:15

Opening Remarks

09:15 - 10:00

KeynoteUT-Heart, a multi-scale, multi-physics heart simulator and its clinical applications
Seiryo Sugiura, Jun-ichi Okada, Takumi Washio, Toshiaki Hisada

10:00 - 10:30

Oral Session

10:00 - 10:15

Extraction of cardiac and respiratory motion information from cardiac X-ray
fluoroscopy images using Hierarchical Manifold Learning
Maria Panayiotou, Andrew King, Kanwal Bhatia, James Housden, YingLiang Ma, Aldo Rinaldi, Jas
Gill, Michael Cooklin, Mark O’Neill, Kawal Rhode10:15 - 10:30

Dyadic Tensor-based Interpolation of Tensor Orientation: Application to Cardiac
DT-MRI
Jin Kyu Gahm, Daniel Ennis

10:30 - 11:00

Coffee Break

11:00 - 12:00

Poster Teaser

12:00 - 13:00

Lunch

13:00 - 14:30

Poster Session

13:00 - 13:30

From regular papers:
Multimodal Pipeline for Comprehensive Validation of Mitral Valve Geometry andFunctional Computational Models
Dominik Neumann, Sasa Grbic, Tommaso Mansi, Ingmar Voigt, Jean-Pierre Rabbah, Andrew W.
Siefert, Neelakantan Saikrishnan, Ajit P. Yoganathan, David D. Yuh, Razvan Ionasec

Fast Catheter Tracking in
Catheterization Interventions

Echocardiographic

Sequencesfor

Cardiac

Xianliang Wu, James Housden, Niharika Varma, YingLiang Ma, Kawal Rhode, Daniel Rueckert

Personalized Modeling of Cardiac Electrophysiology using Shape-Based
Prediction of Fiber Orientation
Karim Lekadir, Ali Pashaei, Corné Hoogendoorn, Marco Pereanez, Xènia Albà, Alejandro F. Frangi

Automatic Extraction of the 3D Left Ventricular Diastolic Transmitral Vortex Ringfrom 3D Whole-Heart Velocity-Encoded MRI using Laplace-Beltrami Signatures
Mohammed S. ElBaz, Boudewijn Lelieveldt, Jos Westenberg, Rob van der Geest

A Unified Statistical/Deterministic Deformable Model for LV Segmentation in
Cardiac MRI
Sharath Gopal, Demetri Terzopoulos

72 ｜ September 26

Direct Myocardial Strain Assessment from Frequency Estimation in Tagging MRI
Hanne Kause, Olena Filatova, Remco Duits, Mark Bruurmijn, Andrea Fuster, Jos Westenberg, Luc
Florack, Hans van Assen

Estimation of Electrical Pathways Finding Minimal Cost Paths from ElectroAnatomical Mapping of the Left Ventricle
Ruben Cardenes, Rafael Sebastian, David Soto, David Andreu, Juan Fernandez-Armenta, Bart
Bijnens, Antonio Berruezo, Oscar Camara

Velocity-Based
Optimization

Cardiac

Contractility

Personalization

with

Derivative-Free

Ken C. L. Wong, Maxime Sermesant, Jatin Relan, Kawal Rhode, Matthew Ginks, C. Aldo Rinaldi,
Reza Razavi, Hervé Delingette, Nicholas Ayache

Image-based estimation of myocardial acceleration using TDFFD: a phantom
study
Ali Pashaei, Gemma Piella, Nicolas Duchateau, Luigi Gabrielli, Oscar Camara

Self Stabilization of Image Attributes for Left Ventricle Segmentation
Sarada Dakua, Julien Abi-Nahed, Abdulla Al-Ansari

Model Based Estimation of 4D Relative Pressure Map from 4D Flow MR Images
Viorel Mihalef, Saikiran Rapaka, Mehmet Gulsun, Puneet Sharma, Angelo Scorza, Lucian Mihai i,
Ali Kamen, Alex Barker, Michael Markl, Dorin Comaniciu

A Framework for the Pre-Clinical Validation of LBM-EP for the Planning andGuidance of Ventricular Tachycardia Ablation
Tommaso Mansi, Roy Beinart, Oliver Zettinig, Saikiran Rapaka, Bogdan Georgescu, Ali Kamen,
Yoav Dori, Muz Zviman, Daniel Herzka, Henry Halperin, Dorin Comaniciu

13:30 - 14:00

From Left Atrial Segmentation Challenge Papers:
Left Atrial Segmentation Challenge: A Unified Benchmarking Framework
Catalina Tobon Gomez, Jochen Peters, Weese Juergen, Karen Pinto, Rashed karim, Tobias
Schaeffter, Reza Razavi, Kawal Rhode

Automatic segmentation of the left atrium on CT image
Daoudi Abdelaziz, Saïd Mahmoudi

Multi-Atlas Segmentation of the Left Atrium and Pulmonary Veins
Zulma Sandoval, Juan-David Ospina, Julian Betancur, Jean-Louis Dillenseger

Model-Based Segmentation of the Left Atrium in CT and MRI Scans
Birgit Stender, Oliver Blanck, Bo Wang, Alexander Schlaefer

Toward an automatic left atrium localization based on shape descriptors and priorknowledge
Mohammed Ammar, Saïd Mahmoudi, Mohammed Amine Chikh, Amine Abbou

Decision forests for segmentation of left atrium from 3D MRI
Jan Margeta, Kristin McLeod, Antonio Criminisi, Nicholas Ayache

14:00 - 14:30

From CFD Challenge Papers:
Multiscale Study on Hemodynamics in Patient-specific Thoracic Aortic Coarctation
Xi Zhao, Youjun Liu, Mingzi Zhang, Fan Bai, Xiaochen Ren, Wenyu Fu, Aike Qiao

Hemodynamic in Aortic Coarctation using MRI-based Inflow Condition
Jens Schaller, Leonid Goubergrits, Pavlo Yevtushenko, Ulrich Kertzscher, Eugénie Riesenkampff,
Titus Kuehne

September 26 ｜ 73

Sensitivity analysis of the boundary conditions in simulations of the flow in an
aortic coarctation at rest and stress conditions
Salvatore Cito, Jordi Pallares, Anton Vernet

Patient-Specific Hemodynamic evaluation of an Aortic Coarctation under Rest andStress conditions
Priti G Albal, Tyson Montidoro, Onur Dur, Prahlad G Menon

CFD Challenge: Predicting Patient-Specific Hemodynamics at Rest and Stressthrough an Aortic Coarctation
Christof Karmonik, Alistair Brown, Kristian Debus, Jean Bismuth, Alan Lumsden

A multiscale filtering-based parameter estimation for patient-specific coarctation
simulations in rest and exercise
Sanjay Pant, Benoit Fabreges, Jean-Frederic Gerbeau, Irene Vignon-Clementel

A Finite element CFD simulation for Predicting Patient-Specific Hemodynamics ofan Aortic Coarctation
Idit Avrahami

Traditional CFD Boundary Conditions Applied to Blood Analog Flow Through a
Patient-Specific Aortic Coarctation
Xiao Wang, Keith Walters, Greg Burgreen, David Thompson

14:30 - 15:15

KeynoteBiomechanics of tissue and exploring its microstructure with waves: neural,
abdominal, and cardiovascular applications
Ralph Sinkus

15:15 - 16:00

Oral Session

15:15 - 15:30

Continuous Spatio-Temporal Atlases of the Asymptomatic and Infarcted Hearts
Pau Medrano-Gracia, Brett Cowan, David Bluemke, J. Paul Finn, Alan H. Kadish, Daniel Lee, JoãoLima, Avan Suinesiaputra, Alistair Young

15:30 - 15:45

Progress on customization of predictive MRI-based macroscopic models fromexperimental data
Mihaela Pop, Maxime Sermesant, Samuel Oduneye, Sudip Ghate, Roey Flor, Susan Newbigging,
Eugene Crystal, Nicholas Ayache, Graham Wright

15:45 - 16:00

Automatic Personalization of the Mitral Valve Biomechanical Model Based on 4D
Transesophageal Echocardiography
Jingjing Kanik, Tommaso Mansi, Ingmar Voigt, Puneet Sharma, Razvan Ionasec, Dorin Comaniciu,
James Duncan

16:00 - 16:45

LA Segmentation Challenge
Presentations of the challenge results and a round table discussion.
Moderators: Catalina Tobon-Gomez, Kawal Rhode16:45 - 17:30

CFD Simulation Challenge
Presentations of the challenge results and a round table discussion.
Moderator:Tommaso Mansi

74 ｜ September 26

September 26 ｜ 75

HPC (08:50 – 17:00) – Room IB014
The Sixth International Workshop on High Performance
Computing for Biomedical Image Analysis
http://www.cs.uky.edu/hpmiccai2013/
Organizers: Lin Yang, David J. Foran, Joel H. Saltz, Bogdan Georgescu
08:50 - 09:00

Opening Remarks

09:00 - 10:00

KeynoteManish Parshar

10:00 - 10:30

Towards Real-Time Cardiac Electrophysiology Computations Using GP-GPU
Lattice-Boltzmann Method

10:30 - 11:00

Coffee Break

11:00 - 11:30

Exploring Online Nuclear Segmentation on Large Fluorescence Brain Tumor
Images using CometCloud

Bogdan Georgescu, Saikiran Rapaka, Tommaso Mansi, Oliver Zettinig, and Ali Kamen

Xin Qi, Daihou Wang, Javier Diaz-Montes, Ivan Rodero, Tony Pan, Abulimit Aji, Lee Cooper,
Fuyong Xing, Manish Parashar, David J. Foran, Lin Yang

11:30 - 12:00

NeuroBox: Seamless Integration of Data Analysis and Data Management onDistributed High Performance Computing
Vittorio Iacovella, Paolo Avesani, Marco Dalla Vecchia, Yannis Velegrakis

12:00 - 13:30

Lunch Time

13:30 - 14:30

KeynoteSiemens Corporate Technology (Current Research Progress
Performance Computing in Medicial Image Analysis in Siemens)

14:30 - 15:00

for

High

High-throughput Content Based Image Retrieval Using GPGPU
Daihou Wang, Xin Qi, Manish Parashar, David J. Foran, Lin Yang

15:00 - 15:30

Coffee Break

15:30 - 16:00

GPU Accelerated CBCT Reconstruction from Few Views with SART and TV
Regularization
Ping Liu, Lin Shi, Defeng Wang, Yu Guo, Jianying Li, Jing Qi, Pheng-Ann Heng

16:00 - 16:30

Distributed Content Based Muscle Image Retrieval Using Kd-Tree and
MapReduce

16:30 - 17:00

Closing discussion with Lin Yang, Manish Parashar, and Siemens Corporate
Technology

Manish Sapkota, Fujun Liu, Lin Yang

76 ｜ September 26

September 26 ｜ 77

MCBR-CDS ’13 (09:00 – 15:10) – Room ES025
MICCAI 2013 workshop on Medical Content-based Retrieval for
Clinical Decision Support
http://www.mcbr-cds.org/
Organizers: Tanveer Syeda-Mahmood, Hayit Greenspan, Anant Madabhushi
09:00 - 09:10

Welcome09:10 - 10:00

Plenary Session (Invited Talk)

10:00 - 10:30

Oral 1A Bag of Semantic Words Model for Medical Content-based Retrieval
Sidong Liu, Weidong Cai, Yang Song, Sonia Pujol, Ron Kikinis, Dagan Feng

10:30 - 11:00

Coffee Break

11:00 - 11:30

Oral 2
Content-based Tissue Region Retrieval in Prostate Histopathology
Kien Nguyen

11:30 - 12:00

Oral 3Gland-based Prostate Tissue Image Classification
Kien Nguyen

12:00 - 12:30

Oral 4
Assistance in qualitative/quantitative assessment of basal cell carcinoma using
optical coherence tomography
Mohammad Avanaki

12:30 - 13:30

Lunch

13:30 - 14:00

Oral 5Longitudinal Analysis of 4D Echocardiography Data Using a Combined Shape andSpeckle Tracking Approach
Colin Compas, Xiaojie Huang, Emily Wong, Ben Lin, Donald Dione, Albert Sinusas, Matthew O’
Donnel, James Duncan

14:00 - 15:00

Invited Panel

15:00 - 15:10

Closing Remarks

78 ｜ September 26

September 26 ｜ 79

PIA 2013 (08:25 – 17:00) – Room IB012
Fifth International Workshop on Pulmonary Image Analysis
http://www.lungworkshop.org/2013/
Organizers: Reinhard R. Beichel, Marleen de Bruijne, Sven Kabus, Atilla P. Kiraly,
Takayuki Kitasaka, Jan-Martin Kuhnigk, Jamie R. McClelland, Eva van Rikxoort, Simon Rit
08:25 - 08:30

Opening
Organizers

08:30 - 10:00

Session 1: Computer Aided Diagnosis

08:30 - 09:00

Automated Scoring of Chest Radiographs for Tuberculosis Prevalence Surveys: A
Combined Approach
Bram van Ginneken, Rick Philipsen, Laurens Hogeweg, Pragnya Maduskar, Jaime Melendez,
Clara Sanchez, Rahmatulai Maane, Beatrice dei Alorse, Umberto d’Alessandro, Ifedayo Adetifa

09:00 - 09:30

Learning Interstitial Lung Diseases CT Patterns from Reports Keywords
José Ramos, Thessa Kockelkorn, Bram van Ginneken, Max Viergever, Jan Grutters, Rui Ramos,
Aurélio Campilho

09:30 - 10:00

Predicting the Occurrence of Radiation Induced Pneumonitis by Texture Analysis
of CT Images from Lung Cancer Patients
Dean Montgomery, Sorcha Campbell, Kun Cheng, Yang Feng, John Murchison,Ai Wain Yong,
Gillian Ritchie, Duncan McLaren, Sara Erridge, Stephen McLaughlin, William Nailon

10:00 - 10:30

Coffee Break

10:30 - 11:30

Invited Speaker
Multiscale image analysis of lung CT images
Noboru Niki

11:30 - 12:30

Posters
An Automated Initialization System for Robust Model-Based Segmentation ofLungs in CT Data
Gurman Gill, Matthew Toews, Reinhard Beichel

Discrimination of benign and malignant GGO in LIDC/IDRI dataset using threedimensional oriented GLCM and hyper-surface fitting
Yasushi Hirano, Rui Xu, Rie Tachibana, Shoji Kido, Hyoungseop Kim

Deformable Registration Combined with 3D SIFT Matching and Moving Least
Squares
Zisheng Li, Tsuneya Kurihara

Semi-automated segmentation of pulmonary lobes in chest CT scans using
evolving surfaces
Pechin Lo, Eva van Rikxoort, Jonathan Goldin, Matthew Brown

A Two-Stage Sliding Window Method for Region-based Lung CT Image Retrieval
Ling Ma, Xiabi Liu, Chunwu Zhou, Xinming Zhao, Yanfeng Zhao

12:30 - 13:30

Lunch

13:30 - 15:00

Session 2: Segmentation

80 ｜ September 26

13:30 - 14:00

2D X-ray airway tree segmentation by 3D deformable model projection andregistration
Benjamin Irving, Tania Douglas, Paul Taylor

14:00 - 14:30

Adaptive higher-ordersegmentation

submodular

potentials

forpulmonaryartery-vein

Yoshiro Kitamura, Yuanzhong Li, Wataru Ito, Hiroshi Ishikawa

14:30 - 15:00

Iterated Stacked Classifiers for Lung Segmentation in Computed Tomography
Francesco Ciompi, Carlo Gatta, Marleen de Bruijne

15:00 - 15:30

Coffee Break

15:30 - 17:00

Session 3: Registration

15:30 - 16:00

Robust Lung Ventilation Assessment

16:00 - 16:30

Combining Automatic Landmark Detection and Variational Methods for Lung CT
Registration

Sven Kabus, Tobias Klinder, Tokihiro Yamamoto, Paul Keall, Billy Loo, Cristian Lorenz

Thomas Polzin, Jan Rühaak, René Werner, Jan Strehlow, Stefan Heldmann, Heinz Handels, Jan
Modersitzki

16:30 - 17:00

Measurement of Local Deformation due to Lung Tumor Response to Radiation
Therapy
Geoffrey Hugo, Kunlin Cao, Christopher Guy, Elisabeth Weiss, Nuzhat Jan, Gary Christensen

17:00

End

September 26 ｜ 81

BIA 2013 (09:00 – 17:00) – Room IB011
MICCAI 2013 Workshop on Breast Image Analysis
http://www.cs.ucl.ac.uk/bia2013/
Organizers: Anne L Martel, Nico Karssemeijer, Mads Nielsen, Martyn Nash, Julia Schnabel,
Despina Kontos, John Hipwell,
09:00 - 09:10

Welcome and Introduction

09:10 - 10:00

Keynote Presentation

Anne Martel
Chair: Julia Schnabel

Ultrasound Tissue Elasticity Imaging in Breast Cancer
Tsuyoshi Shiina

10:00 - 10:30

Coffee Break

10:30 - 12:00

Session 1: Deformation and Registration

10:30

Temporal and ipsilateral X-ray mammography registration via a 3D patientspecific model

Chair: Martyn NashThomy Mertzanidou, John Hipwell, Lianghao Han, Henkjan Huisman, Ulrich Bick, Nico
Karssemeijer and David Hawkes

10:50

Modelling Breast Deformation Using Partial Least-Squares Regression
Duane T K Malcolm, Chun M Goh, Thiranja P Babarenda Gamage, Baosheng Hou, Poul M F
Nielsen and Martyn P Nash

11:10

Evaluation of a B-spline-based breast compression simulation for correspondence
analysis between MRI and mammographic image data
Julia Krüger, Jan Ehrhardt, Arpad Bischof and Heinz Handels

11:30

Registration of Automated 3D Breast Ultrasound Views
Tao Tan, Björn Eiben, Bram Platel, Jan van Zelst, Lianghao Han, Thomy Mertzanidou, StianJohnsen, John Hipwell, Ritse Mann, David Hawkes and Nico Karssemeijer

12:00 - 14:00

Lunch and Posters
Automatic Detection of Architectural Distortion in Mammograms using Sparse
Overcomplete Dictionaries of a Curvelet Descriptor.
Fabián Rodrigo Narveáez Espinoza and Eduardo Romero

Contrast-Agent-Free MRI-guided Breast Biopsies Enabled by Breast Deformation
Simulation
Markus Harz, Suzan Akbey, Ritse M. Mann, Kathy Schilling, Joachim Georgii and Horst Hahn

Learning to detect lesion boundaries in breast ultrasound images
Pavel Kisilev, Ella Barkan, Greg Shakhnarovich and Asaf Tzadok

Image quality in automated breast ultrasound images: a preliminary study for thedevelopment of automated image quality assessment
Julia Schwaab, Yago Diez, Joan Martí, Robert Martí, Jan van Zelst, Bram Platel, Tao Tan,
Johannes Gregori, Stefan Wirtz, Johanna Kramme and Matthias Günther82 ｜ September 26

Characterising and Quantifying the Variation in Adipose and Fibroglandular Tissue
between Women when Measuring Breast Density
Christopher Tromans and Michael Brady

14:00 - 15:00

Session 2: Digital Mammography
Chair: Nico Karssemeijer

14:00

Standard Attenuation Rate and Volpara(R) Volumetric Density Maps

14:20

Effect of Reference Image Retrieval on Breast Mass Classification Performance:
ROC Analysis.

Faraz Janan, Sir Michael Brady, Christopher Tromans and Ralph Highnam

Chisako Muramatsu, Tokiko Endo, Mikinao Oiwa, Misaki Shiraiwa, Kunio Doi and Hiroshi Fujita

14:40

Predicting False-Positive Biopsy Risk from Digital Mammography Using LocallyAdaptive Parenchymal Texture Analysis.
Jae Choi, Brad Keller, Emily Conant and Despina Kontos

15:00 - 15:30

Coffee Break

15:30 - 16:50

Session 3: Segmentation and Classification
Chair: Despina Kontos

15:30

Atlas-Based Segmentation of Breast MR Images.
Farzad Khalvati and Anne Martel

15:50

Automated localization of malignant lesions in breast DCE-MRI.
Albert Gubern-Mérida, Bram Platel, Ritse M Mann, Robert Martí and Nico Karssemeijer

16:10

A Texture Based Approach to Automated Detection of Diagnostically Relevant
Regions in Breast Digital Pathology
Mohammad Peikari, Judit Zubovits, Gina Clarke and Anne Martel

16:30

A fully automatic lesion classification in breast ultrasound.
Eugene Walach, Pavel Kisilev, Dan Chevion, Ella Barkan, Sivan Harary, Sharbell Hashaul, Ami
Ben-Horesh, Asaf Tzadok, Irith Hadas-Halpern and Irena Nikitin

16:50 - 17:00

Closing Remarks

September 26 ｜ 83

RMI (8:30 – 12:30) – Room ES035
R based medical imaging tutorial
http://stnava.github.io/RMI/
Organizers: Brian B. Avants, Tom Fletcher
09:00 - 09:10

Brief Introduction and Overview of R,
Brian Avants, Brandon Whitcher

09:00 - 10:00

Morphometry and fMRI in R with ANTsRBrian Avant

10:00 - 10:30

Coffee Break

10:30 - 12:00

Model Selection and Longitudinal Analysis with R
Tom Fletcher

12:00 - 12:30

84 ｜ September 26

Questions & Future Plans

September 26 ｜ 85

Intelligent MR (08:30 – 17:00) – Room ES033
Intelligent imaging: Linking MR acquisition and processing
http://www.med.umich.edu/intelligentMR/MiCCAI13tut/
Organizers: Boklye Kim, Charles R. Meyer, Daniel Rueckert, Colin Studholme, William Wells
08:30 - 08:40

Opening
Organizers

08:40 - 10:10

Session I: Plenary Overviews

08:40 - 09:25

Recent advances, methodologies and applications of MRI / fMRI; 7T MRI: GameChanger for Human Neuroscience
Robert Turner

09:25 - 10:10

Neuro and Cardiac Elements of MRI: Dealing with motion in MRI in the image
domain or k-space - why choose which?
Jo Hajnal

10:10 - 10:30

Coffee/Tea Break

10:30 - 15:00

Session II: Current Topics in MRI/fMRI Data Acquisition, Image Processing
and Registration

10:30 - 11:00

MRI/fMRI Methodology, Motion and Pitfalls
Chuck Meyer

11:00 - 11:30

Recent advances in retrospective and prospective motion correction in MRI and
trade-offs between these two motion correction strategies
Onur Afacan

11:30 - 12:00

Magnetic Susceptibility
Characterization

and

MRI:

Distortion

Correction

andTissueWilliam Wells

12:00 - 12:30

Spin saturation artifact with head motion
Boklye Kim

12:30 - 13:30

Lunch

13:30 - 14:00

Cardiac MRI for Reverse Engineering Cardiac Mechanics

14:00 - 14:30

Cardiac and respiratory MR imaging: Motion estimation and modelling

Alistair Young
Daniel Rueckert

14:30 - 15:00

Fetal/neonatal MRI acquisition and processing: Motion correction and superresolution
Georg Langs

15:00 - 15:30

Q/A and Break

15:30 - 17:00

Session III: Current and Potential Clinical Applications of MRI/fMRI andImage Registration

15:30 - 16:00

Compressed sensing applications to cardiac MRI
Dimitris Mataxas

86 ｜ September 26

16:00 - 16:30

Accelerated imaging and Compressed sensing in MRI
Raj Ashish

16:30 - 17:00

Superresolution diffusion magnetic resonance imaging
Simon Warfield

17:00

Discussion and Concluding Remarks

September 26 ｜ 87

CTK-MICCAI 2013 (08:30 – 12:30) – Room ES035
Common architecture for algorithm development and deployment
http://www.dkfz.de/en/mbi/ctk-miccai2013/index.html
Organizers: Sascha Zelzer, Marco Nolden, Sonia Pujol, Steve Pieper, Matt Clarkson
08:30 - 09:15

The Common Toolkit: What it provides and how to use it
Sascha Zelzer, Marco Nolden, Steve Pieper

09:15 - 10:00

Medical imaging platforms perspective: How platforms like 3D Slicer, MITK,GIMIAS, MAF and MedInria use CTK
Marco Nolden, Ivo Wolf, Sascha Zelzer, Steve Pieper

10:30 - 11:30

Algorithm developer perspective: How to and why make your algorithm compatible
with CTK. Interoperability use cases
Sebastien Ourselin, Matt Clarkson, Hans Johnson, Sonia Pujol

11:30 - 12:30

Deployment scenarios: Classrooms, Research Labs, Reading Rooms, ORs,
Workstations, Web Servers, Clusters and Clouds.
Steve Pieper, Hans Johnson, Sonia Pujol, Marco Nolden

88 ｜ September 26

September 26 ｜ 89

SATA ’13 (08:30 – 17:00) – Room ES021
MICCAI Challenge Workshop on Segmentation: Algorithms,
Theory and Applications
https://masi.vuse.vanderbilt.edu/workshop2013/index.php/Main_Page
Organizers: Bennett Landman, Simon Warfield
08:30 - 10:00

Session 1: Technical Program
Chair: Bennett Landman

08:30 - 08:40

WelcomeBennett Landman

08:40 - 09:00

BrainGraph: tissue segmentation using the Geodesic Information Flowsframework
M. Jorge Cardoso, Marc Modat, Sebastien Ourselin

09:00 - 09:20

Automated Cerebellar Lobule Segmentation using Graph Cuts
Zhen Yang, John Bogovic, Chuyang Ye, Aaron Carass, Sarah Ying, Jerry Prince

09:20 - 09:40

Uncertainty Estimates for Improved Accuracy of Registration-Based Segmentation
Propagation using Discrete Optimisation
Mattias Heinrich, Ivor Simpson, Mark Jenkinson, Michael Brady, Julia Schnabel

09:40 - 10:00

Automatic cortical tuber segmentation based on a combined global-local intensity
mixture model (invited paper)
Xavier Tomas-Fernandez, Peters Jurriaan, Sanjay Prabhu, Mustafa Sahin, Simon K. Warfield

10:00 - 10:30

Coffee Break (and Posters)

10:30 - 11:00

Poster Session I

11:00 - 11:25

Session 2: Challenge Overview

11:00 - 11:05

Challenge Awards
Bennett Landman

11:05 - 11:25

Standardized Registration Methods for the SATA Challenge Datasets (invited
paper)
Brian Avants, Nicholas Tustison

11:25 - 12:30

Session 3: Cardiac Challenge (Chair: Alistair Young)

11:25 - 11:35

Overview
Alistair Young

11:35 - 11:55

Patch-Based Label Fusion with Spatio-Temporal Graph Cuts for Cardiac MR
ImagesWenjia Bai, Wenzhe Shi, Nicholas Peters, Daniel Rueckert

11:55 - 12:15

Segmentation of the Left Ventricle Using Distance Regularized Two-layer Level
Set Approach
Chaolu Feng, Chunming Li, Christos Davatzikos, Harold Litt

12:15 - 12:30

Discussion

12:30 - 13:30

Lunch

90 ｜ September 26

13:30 - 14:40

Session 4: Diencephalon Challenge (Chair: Simon K. Warfield)

13:30 - 13:40

Overview
Simon K. Warfield

13:40 - 14:00

Morphological Appearance Manifolds for Multiatlas Label Fusion
Jimit Doshi, Guray Erus, Yangming Ou, Christos Davatzikos

14:00 - 14:20

Multi-Atlas Label Propagation with Atlas Encoding by Randomized Forests

14:20 - 14:40

Discussion

14:40 - 15:00

Poster Session II

15:00 - 15:30

Coffee Break

15:30 - 16:20

Session 5: Canine Challenge (Chair: Martin Styner)

15:30 - 15:40

Overview

15:40 - 16:00

PICSL Algorithm Summary for MICCAI Grand Challenge on Segmentation

Darko Zikic, Ben Glocker, Antonio Criminisi

Martin Styner
HongZhi Wang, Brian Avants, Paul Yushkevich

16:00 - 16:20

Discussion

16:20 - 17:00

Session 6: Open Discussion

16:20 - 17:00

Where do we go from here?

Technical Posters
T1 BrainGraph: tissue segmentation using the Geodesic Information Flows framework
M. Jorge Cardoso, Marc Modat, Sebastien Ourselin

T2 Robust Initialization of Multi-Organ Shape Models
Nicole Schadewaldt, Daniel Bystrov, Torbjørn Vik, Heinrich Schulz, Jochen Peters, Astrid Franz, Christian Bürger,
Karl Bzdusek

T3 Automated Cerebellar Lobule Segmentation using Graph Cuts
Zhen Yang, John Bogovic, Chuyang Ye, Aaron Carass, Sarah Ying, Jerry Prince

T4 Negotiable democracy: determining the ‘tailored majority’ in multiple classifier fusion
Thomas Langerak, Josien Pluim

T5 Automatic Segmentation of Multiple Objects in Medical Images based on Structured Patch
Model
Sang Hyun Park, Seungyeon Shin, Il Dong Yun, Sang Uk Lee

T6 Uncertainty Estimates for Improved Accuracy of Registration-Based Segmentation Propagation
using Discrete Optimisation
Mattias Heinrich, Ivor Simpson, Mark Jenkinson, Michael Brady, Julia Schnabel

T7 Regression forest region recognition enhances multi-atlas spleen labeling
Bo Li, Swetasudha Panda, Zhoubing Xu, Andrew Asman, Peter Shanahan, Richard Abramson, Bennett Landman

T8 Automatic cortical tuber segmentation based on a combined global-local intensity mixture model(invited paper)
Xavier Tomas-Fernandez, Peters Jurriaan, Sanjay Prabhu, Mustafa Sahin, Simon K. Warfield

September 26 ｜ 91

Challenge Posters
C1 A Variational Level Set Framework for Label Fusion in Multi-Atlas Segmentation
Zhentai Lu, Chunming Li, Wu-fan Chen, Christos Davatzikos

C2 PICSL Algorithm Summary for MICCAI Grand Challenge on Segmentation
HongZhi Wang, Brian Avants, Paul Yushkevich

C3 Multi-Atlas Segmentation Propagation with Uncertainty Estimates from Belief Propagation
Mattias Heinrich, Ivor Simpson, Michael Brady, Julia Schnabel

C4 Patch-Based Label Fusion with Spatio-Temporal Graph Cuts for Cardiac MR Images
Wenjia Bai, Wenzhe Shi, Nicholas Peters, Daniel Rueckert

C5 Patch-based Segmentation without Registration: Application to Canine Leg MRI
Zehan Wang, Anil Rao, Daniel Rueckert

C6 Multi-Atlas Label Propagation with Atlas Encoding by Randomized Forests
Darko Zikic, Ben Glocker, Antonio Criminisi

C7 Probabilistic label fusion with a parametric generative model
Juan Iglesias, Mert Sabuncu, Koen Van Leemput

C8 Automatic Segmentation of Multiple Objects in Medical Images based on Structured Patch
Model
Sang Hyun Park, Seungyeon Shin, Il Dong Yun, Sang Uk Lee

C9 Segmentation of the Left Ventricle Using Distance Regularized Two-layer Level Set Approach
Chaolu Feng, Chunming Li, Christos Davatzikos, Harold Litt

C10 Multi-Atlas Segmentation using Unoptimized Baseline Statistical Fusion
Swetasudha Panda, Andrew Asman, Bennett Landman

C11 Summary of the MASI Statistical Fusion Approach for the MICCAI SATA Challenge
Andrew Asman, Bennett Landman

C12 Morphological Appearance Manifolds for Multiatlas Label Fusion
Jimit Doshi, Guray Erus, Yangming Ou, Christos Davatzikos

Proceedings Papers without Posters
P1 MICCAI 2013 Segmentation Algorithms, Theory and Applications (SATA) Challenge Results
Summary
Andrew Asman, Alireza Akhondi-Asl, Hongzhi Wang, PENN, Nicholas Tustison, Brian Avants, Simon K. Warfield,
Bennett Landman

P2 Standardized Registration Methods for the SATA Challenge Datasets
Brian Avants, Nicholas Tustison

92 ｜ September 26

September 26 ｜ 93

MRBrainS13 (08:30 – 17:00) – Room ES022
MICCAI Grand Challenge on MR Brain Image Segmentation
http://mrbrains13.isi.uu.nl/
Organizers: Adriënne Mendrik, Geert Jan Biessels, Hugo Kuijf, Koen Vincken, Max Viergever
08:30 - 09:00

Opening and Distribution of the Three On-Site Test Datasets

09:00 - 12:30

On-Site Challenge: Participants Run Their Algorithms on the Test Scans
Provided at the Workshop

10:00 - 10:30

Coffee Break

12:30 - 13:30

Lunch Break (Evaluation of the on-site challenge results by the organizers)

13:30 - 13:40

About the MRBrainS13 Challenge

13:40 - 14:10

MR Brain Image Segmentation: Industrial versus Academic Perspective
M. Breeuwer

14:10 - 14:20

Automated Brain-Tissue Segmentation by Multi-Feature SVM Classification
A. van Opbroek

14:20 - 14:30

Automatic Brain Tissue Segmentation of Multi-sequence MR images using
Random Decision Forests
S. Pereira

14:30 - 14:40

Multi-Atlas Brain MRI Segmentation with Multiway Cut
D. Sarikaya

14:40 - 14:50

Fully automatic brain segmentation using model-guided level sets and skeletonbased models
C. Wang

14:50 - 15:00

MAP-Based Framework for MR Brain Images Segmentation Based on VisualAppearance and Prior Shape
A. Alansary

15:00 - 15:20

Coffee Break

15:20 - 15:30

Automated Walks using Machine Learning for Segmentation
S. Vyas and R. Mukherjee

15:30 - 15:40

Auto-kNN: Brain Tissue Segmentation using Automatically Traind k-NearestNeighbor Classification
H.A. Vrooman

15:40 - 15:50

Gaussian Intensity Model with Neighborhood Cues for Fluid-Tissue Categorizationof Multi-Sequence MR Brain Images
R. Katyal and S. Paneri

15:50 - 16:00

MR Brain Segmentation Using Decision Trees

16:00 - 16:10

Modified Expectation Maximization Method for Automatic Segmentation of MR
Brain Images

A. Carass

R.M. Prakash
94 ｜ September 26

16:10 - 16:20

Multimodal MR Brain Segmentation Using Bayesian-based Adaptive Mean-Shift(BAMS)
M. Alipoor

16:20 - 16:30

Multi-Atlas-based Segmentation with Hierarchical Max-Flow
A.R. Khan

16:30 - 17:00

Challenge Results, Discussion and Closing Remarks

September 26 ｜ 95

Notes96