GIW 2000 ProgramRegistration

Garden Hall

December 18 : 9:00 -18:30
December 19

9:00 -17:00

December 18, 2000 (Mon)
Opening Address
9:20 -9:30

Session 1
9:30 -9:50

A.Keith Dunker (Washington State University)

Genome Analysis“Rice at the Forefront of Plant Genome Informatics ”
Bal A.Antonio, Katsumi Sakata, Takuji Sasaki

9:50 -10:10“An Integrated Analysis and Database System for Full-Length cDNA ”
Tetsuo Nishikawa, Katsuhiko Murakami, Naoyuki Harada, Toshio Ota,Tomoyasu Sugiyama, Keiichi Nagai, Ryotaro Irie, Hiroshii Matui,Makiko Suwa, Takao Isogai

10:10 -10:30 “An Infrastructure for Comparative Genomics to Functionally
Characterize Genes and Proteins ”
Clemens Suter-Crazzolara, Gunther Kurapkat
10:30 -10:50 “Intelligent DNA Chips: Logical Operation of Gene Expression Profiles
on DNA Computers ”
Yasubumi Sakakibara, Akira Suyama

Break

10:50-11:00

Invited Talk

“Whole Genome Assemblies of the Drosophila and Human Genomes ”

11:00 -12:00

Gene Myers (Celera Genomics)

Lunch Break

12:00 -13:20

Session 2Intelligent Systems and Algorithms for Molecular Biology

13:20 -13:40“Biological Sequence Compression Algorithms ”Toshiko Matsumoto, Kunihiko Sadakane and Hiroshi Imai

13:40 -14:00“Sequencing by Hybridization in the Presence of Hybridization Errors ”
Koichiro Doi and Hiroshi Imai

14:00 -14:20“Visualization and Manipulation of Pedigree Diagrams ”
Limsoon Wong

14:20 -14:40“Intelligent System for Topic Survey in MEDLINE by Keyword
Recommendation and Learning Text Characteristics ”
Miyako Tanaka, Sanae Nakazono, Hiroshi Matsuno, Hideki Tsujimoto,
Yasuhiko Kitamura, Satoru Miyano

JSBi Annual Meeting
General Meeting
14:40 -15:00
15:00 -17:00

One-Minute Talks for Poster &Software Demonstrations

17:00 -18:30

Poster &Software Demonstrations (Garden Hall Foyer)

Social Events
18:30 -21:00

Award Ceremony &Banquet (Garden Hall Foyer)

December 19, 2000 (Tue)
Session 3
9:00 -9:20

Expression Profile Analyses“Correspondence Analysis of Genes and Tissue Types and Finding
Genetic Links from Microarray Data ”
Hirohisa Kishino, Peter J. Waddell

9:20 -9:40“Environmental Factor Dependent Maximum Likelihood Method for
Association Study Targeted to Personalized Medicine ”
Tatsuhiko Tsunoda, Ryo Yamada, Toshihiro Tanaka, Youzo Ohnishi,Naoyuki Kamatani

9:40 -10:00“Expression Profiles and Biological Function ”
Juan Carlos Oliveros, Christian Blaschke, Javier Herrero, Joaquin Dopazo,Alfonso Valencia

10:00 -10:20“Inferring Genetic Networks from DNA Microarray Data by Multiple
Regression Analysis ”
Mamoru Kato, Tatsuhiko Tsunoda, Toshihisa Takagi

10:20 -10:40“Cluster Inference Methods and Graphical Models Evaluated on
NCI60 Microarray Gene Expression Data ”
Peter J.Waddell, Hirohisa Kishino

Break

10:40 -10:50

Invited Talk

“RIKEN Structural Genomics Initiative ”

10:50 -11:50

Lunch Break

Shigeyuki Yokoyama (RIKEN &University of Tokyo)

11:50-13:00

Poster and Software Demonstrations (JSBi Session,Garden Hall Foyer)
13:00 -14:30

Session 4
14:30 -14:50

Protein Structure Analyses“Protein Sequence-Structure Alignment Based on Site-Alignment
Probabilities ”
Sanzo Miyazawa

14:50 -15:10“Clustering and Averaging of Images in Single-Particle Analysis ”
Kiyoshi Asai, Yutaka Ueno, Chikara Sato, Katsutoshi Takahashi

15:10 -15:30“Intrinsic Protein Disorder in Complete Genomes ”
A.Keith Dunker ,Zoran Obradovic, Pedro Romero, Ethan C.Garner,Celeste J. Brown

15:30 -15:50“Comparing Predictors of Disordered Protein ”
Xiaohong Li, Zoran Obradovic, Celeste J.Brown, Ethan C.Garner,
A.Keith Dunker

Break

15:50-16:00

Session 5

Protein Interaction Simulation

16:00 -16:20“Two-Phase Partition Method for Simulating a Biological System at
an Extremely High Speed ”
Hiroyuki Kurata, Kazunari Taira

16:20 -16:40“ A Gene Network Inference Method from Continuous-Value Gene Expression
Data of Wild-Type and Mutants ”
Koji M.Kyoda, Mineo Morohashi, Shuichi Onami, Hiroaki Kitano

16:40 -17:00“MIAX: A System for Assessment of Macromolecular Interaction.
3)A Parallel Hybrid GA for Flexible Protein Docking ”
Carlos Adriel Del Carpio M., Atsushi Yoshimori

Closing

17:00 -17:10