Accepted Posters
P001 GC Content Provides New Insights into Exon Recognition Eddo Kim, Amir Goren,
Maayan Amit, Gil Ast
P002 Immigrants to the Nucleus; Analysis of Mitochondrial-like Fragments in Human Genome
Junko Tsuji, Paul Horton
P003 How (not) to align Genomes Martin C. Frith, Michiaki Hamada, Paul Horton
P004 Expression Proﬁle in Various Stages of Gametogenesis Correlates with the Alu Distribution
Pattern in Human Genome Hiroki Ashida, Toutai Mituyama, Kiyoshi Asai
P005 Properties of the Word Set for Estimating Similarities between Prokaryotic Genomes in Linguistic Approach Keishin Hanya, Satoshi Mizuta
P006 Comparative Genomic Analysis of Unicellular to Seed Plants by Using Gene Functions of
A.thaliana Mai Kawazoe, Hiroki Takahashi, Masayoshi Wada, Aki Hirai, Kensuke Nakamura,
Md. Altaf-Ul-Amin, Shigehiko Kanaya
P007 The Evolution of Metazoan Mitochondrial Genome and Latent Biological Mechanisms
Haidong Tan, Masaharu Seno
P008 Detection of Mosaic Structure of Syntenic Segments in Marine Cyanobacterial Genomes
Naobumi V. Sasaki, Naoki SatoP009 Contribution of Mobile Genetic Elements on Variation in Gene Content among Bacteria
Haruo Suzuki, Michael J. Stanhope
P010 Comparative Analysis of Information Contents Relevant to Intron Recognition in Many Species
Hiroaki Iwata, Osamu Gotoh
P011 Plant Gene Identiﬁcation Based on Cross-Species Mapping of Full-Length cDNAs Naoki Amano,
Tsuyoshi Tanaka, Hisataka Numa, Hiroaki Sakai, Takeshi ItohP012 Integrated Transcriptional Regulatory Networks Identify Diﬀerences in Iron Regulation Acrossand within Yersinia Species Xin-Yi Chua, James Hogan
P013 The Functional Diversity of GPCR Genes Observed from Comparative Genome Analysis.
Makiko Suwa, Yukiteru Ono, Wataru Fujibuchi
P014 A Method for Extracting Optimal Sequence Related to Biological Activity Tatsuya Nosho,
Ko Kato, Hiroki Takahashi, Md. Altaf-Ul-Amin, Shigehiko Kanaya
P015 Evolution of Human Phosphorylation Sites Dong Seon Kim, Yoonsoo Hahn
P016 Prediction of the O-glycosylation by Support Vector Machine and Independent Component Analysis for Amino Acid Sequence around O-glysocylation Yukiko Nakajima, Kazutoshi Sakakibara,
Masahiro Ito, Ikuko Nishikawa
P017 Detection of Tissue-Speciﬁc Genes and Computational Analysis of Testis-Speciﬁc Gene Expression Regulatory Regions Akifumi Yamashita, Naohisa Goto, Seiji Nishiguchi, Kazunori Shimada, Hiromichi Yamanishi, Teruo Yasunaga
P018 Pairwise RNA Pseudoknotted Structure Prediction
Nobuyoshi Mizoguchi, Yuki Kato, Hiroyuki Seki

Based

on

Stochastic

GrammarP019 The Eﬀect Read Length has on the Performance of Adaptive Seeds for Sequence Alignment
Raymond Wan, Szymon M. Kielbasa, Paul Horton, Martin C. FrithP020 Prediction of Eukaryotic Translation Initiation Sites Using Machine Learning Yoko Ishino
P021 Selectivity of Cis-Element Data and its Analysis with an Informatics Approach Yuya Yamazaki,
Tomonori Suzuki, Satoru Miyazaki
1

P022 Comprehensive Analysis of Polyketide Synthase Families Yugo Shimizu, Masaaki Kotera, Toshiaki Tokimatsu, Masahiro Hattori, Susumu Goto, Minoru Kanehisa
P023 A Multi-Objective Genetic Algorithm for Pairwise RNA Sequence Alignment Akito Taneda
P024 Molecular Evolutionary Analysis of Primary Immunodeﬁciency Associated Genes Tomotaka Koyama, Katsuhiko Mineta, Toshinori Endo
P025 Inference of Geographic Transmission Probability of Inﬂuenza Viruses from a Large Phylogenetic
Tree Fumiaki Yanagihashi, Kimihito Ito, Hiroki Arimura
P026 New trend of Biodiversity Informatics Based on Global Biodiversity Information Facility (GBIF)
and Barcode of Life (BoL) Yasumasa Shigemoto, Yoshikazu Kuwana, Hideaki Sugawara
P027 Analysis of Plant UGT Family Sequences and Substrate Speciﬁcity Yosuke Nishimura, Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
P028 Complicated Evolutionary History of Wild and Cultivated Asian Rice Disclosed by Gene Tree
Incongruence Analysis Ching-chia Yang, Hiroaki Sakai, Takeshi ItohP029 TANGLE: an Integrated Server for Protein Backbone Torsion Angle Prediction Jiangning Song,Hao Tan, Khalid Mahmood, Geoﬀrey Webb, Tatsuya Akutsu, James Whisstock
P030 Analysis of Glycan Recognition Sites of Viruses Shota Yamada, Sayaka Takase, Kiyoko F. AokiKinoshita
P031 Development of a New Glycan Score Matrix Yukie Akune, Kiyoko F. Aoki-Kinoshita
P032 Identifying Functional Motifs on Protein Surfaces by Structural Alignment with Sequence Information Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Takashi Yamamoto, Xiang-Sun Zhang,
Luonan Chen
P033 Improvement of All-to-All Protein-Protein Interaction Prediction System MEGADOCK
Masahito Ohue, Yusuke Matsuzaki, Yuri Matsuzaki, Yutaka Akiyama
P034 Classiﬁcation of Protein Fragments with a Graph Spectral Technique Jun-ichi Ito, Junichi Higo,
Kentaro Tomii
P035 Classiﬁcation and Identiﬁcation of Indiscernible Metal Binding Sites of Proteins Yuki Sakashita,
Jun-ichi Ito, Kiyoshi Asai, Kentaro Tomii
T001/P036 Dynamic Programming Algorithms for RNA Structure Prediction with Binding Sites Unyanee Poolsap, Yuki Kato, Tatsuya Akutsu
P037 Identiﬁcation of DNA Methylation Which Leads to Diﬀerences of Gene Interaction Network
between Cell Types Michio Kamiya, Kenji Satou, Yoichi Yamada
P038 Gene-Expression-Based Disease Class Classiﬁcation Using Probit Model Hideyuki Takahashi,
Toshimasa Yamazaki, Hiroki Sasaki
P039 Finding Informative Genes Related to Alzheimer Disease using Supervised Independent Component Analysis Faezeh Dorri, Houshang Hassibi, Seyed Hassan Paylakhi, Elahe Elahi
P040 Correction and Integration of Normalized Microarray Data Takashi Yoneya, Tatsuya Miyazawa
P041 Microarray-Based Classiﬁcation of Seed-Speciﬁc Gene Expression for Pigmentation in Colored
Rice Changkug Kim, Unghan Yoon, Dowon Yun, Gangseob Lee, Yonghwan Kim
P042 Annotating Gene Functions by Spectral Clustering for Combining Gene Expressions and Sequences Limin Li, Motoki Shiga, Wai-ki Ching, Hiroshi Mamitsuka
P043 Molecular Network Analysis Suggests Aberrant CREB-Mediated Gene Regulation in the
Alzheimer’s Disease Hippocampus Jun-ichi Satoh, Shinya Obayashi, Hiroko Tabunoki
2

P044 Analyzing Histone Codes by a Computational Approach Yayoi Natsume-Kitatani, Motoki Shiga,
Hiroshi Mamitsuka
P045 Genome-Wide Three-Way Gene Interactions from Transcript and Genotype Data Mitsunori Kayano, Ichigaku Takigawa, Motoki Shiga, Koji Tsuda, Hiroshi Mamitsuka
P046 Prevailing Cancer Transcriptional Networks Revealed by Meta-Analysis of Cancer Transcriptomes Atsushi Niida, Seiya Imoto, Masao Nagasaki, Rui Yamaguchi, Satoru Miyano
P047 Subspace Clustering of Gene Expression Data with Prior Knowledge Yoko Omura, Jun Sese
P048 Cytokine Productions and Gene Expressions Caused by Mechanical Stretching of Normal Human Pulmonary Artery Endothelial Cells Kozue Kobayashi, Masumi Tanaka, Hidenori Inaoka,
Satoru Nebuya, Yutaka Fukuoka, Hirosuke Kobayashi, Makoto Noshiro
P049 Data Analysisf of Genomic Alteration by Environmental Toxicant Yu Ri An, Seung Jun Kim,
Hye-Won Park, Jong Pil Youn, Jung Mi Ha, Moon-Ju Oh, Seung Yong Lee, Jung-Hwa Oh,
Seok-Joo Yoon, Seung Yong Hwang
P050 Co-Expression Analysis in Close Physical Proximity Using Tumor Data Hidenori Inaoka, Yutaka Fukuoka, Makoto Noshiro
P051 Distinguishing Tumors from Normal by Cell Surface Maker with Spherical SOM Yuh Sugii,
Ling Chen, Heizo Tokutaka, Masaharu Seno
P052 Aspergillus Niger: Mapping Fungal Speciﬁc Zinc-Finger Transcription Factors to Gene CoExpression Networks Benjamin M. Nitsche, Vera Meyer, Arthur FJ. Ram
P053 Comparison of Transcriptional Regulatory Network Based on Cis-Module Database
Shizu Akasaka, Tomoko Urushibara, Tomonori Suzuki, Satoru Miyazaki
P054 Quality Control and Reproducibility in DNA Microarray Experiments André Fujita, João Sato,
Fernando H.L da Silva, Maria C. Galvaõ, Mari C. Sogayar, Satoru Miyano
P055 A Statistical Method of Analyzing Global Gene Expression Data Obtained from Experiments Using Japanese Herbal Medicine Masayuki Shojo, Akira Katoh, Tatsuhiko Ikeda, Yuka Ninomiya,
Masatomo Sakurai, Tomoyuki Hayasaki, Toshihiko Hanawa, Hiroki Takahashi, Md. Altaf-UlAmin, Kyosuke Nomoto, Shigehiko Kanaya
P056 A Web Tool for Expression Pattern-Based Data Retrieval and Relevant Network Discovery fromvast Public Microarray Database Chunlai Feng, Michihiro Araki, Ryo Kunimoto, Akiko Tamon,
Hiroki Makiguchi, Satoshi Niijima, Gozoh Tsujimoto, Yasushi Okuno
P057 A Method of Estimation of Crosstalk Genes with Multiple Time-Series Gene Expression ProﬁlesKiyoshi Yoshizawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
P058 Reinterpretation of the Database Search Result Using Trans-Proteomics Pipeline in
Mass Spectrometry-Based Proteomics Kyung-Hoon Kwon, Sang Kwang Lee, Kun Cho,
Gun Wook Park, Byeong Soo Kang, Young Mok Park
P059 Time and Space Eﬃcient Implementation of Robust Biclustering Algorithm (ROBA) Muhammad Ibrahim, Nasimul Noman, Hitoshi Iba
P060 A Study of Diﬀerent Rule Selection Strategies for Rule Based SNP Imputation Yue Wang,
Guimei Liu, Limsoon Wong
P061 Discovering CNVs from Read Depth Analysis of Next Generation Sequencing Data Alexej Abyzov, Alexander Eckehart Urban, Michael Snyder, Mark Gerstein
P062 Accurate Assignment of Short Pyrosequencing Reads in a 16S rRNA TaxonomyJosé C. Clemente, Jesper Jansson, Gabriel Valiente
P063 Bayesian Analysis of Perturbed Escherichia coli metabolism Seung Min Yoo, Hyun Uk Kim,
Tae Yong Kim, Sang Yup Lee
3

P064 Adjustable Diﬀusion Matrix-Based Spectral Clustering for Protein-Protein Interaction Network
Kentaro Inoue, Hiroyuki Kurata
P065 Novel Robustness Analysis Reveals Remarkable Robustness of Dual Feedback Loops in a Circadian Clock Kazuhiro Maeda, Hiroyuki Kurata
P066 Module Decomposition and Integration Method Optimizes a Large-Scale Cell Cycle Model
Daichi Nitta, Hiroyuki Kurata
P067 Metabolite Essentiality Analysis Using Genome-Scale Metabolic Networks of Pathogens for the
Drug Discovery Sang Yup Lee, Hyun Uk Kim, Tae Yong Kim
P068 Metabolic Network Reconstruction and Pathway Analysis of Mannheimia Succiniciproducens
Seung Min Yoo, Tae Yong Kim, Hyung Rok Choi, Sang Yup Lee
P069 Proteome Analysis of the Succinic Acid Producer Mannheimia Succiniciproducens and Byproduct Elimination Strategy Yu Hyun Lee, Jeong Wook Lee, Meehee Kim, Sang Yup Lee
P070 Adaptive Response to Low Level of an Alkylating Agent in Escherichia coli K-12 and ada
Mutant Strains by Transcriptome and Proteome Analyses Yu Hyun Lee, Mee-Jung Han,
Jong Hwan Baek, Sang Yup Lee, Meehee Kim
P071 Genome-Wide Mutational and Expression Analyses of Evolved Escherichia Coli Strains Under
Ethanol Stress Takaaki Horinouchi, Kuniyasu Tamaoka, Chikara Furusawa, Takashi Hirasawa,
Naoaki Ono, Shingo Suzuki, Tetsuya Yomo, Hiroshi Shimizu
P072 Modeling of Early Sporulation in Bacillus Subtilis with Hybrid Functional Petri net
Jin Hwan Do, Masao Nagasaki, Satoru Miyano
P073 Model Analysis of Helper T Cell Diﬀerentiation with Transcriptional Factor’s Interactions in
Th0 Satoshi Yamada, Akihiko Yoshimura
P074 Systematic Identiﬁcation of Diﬀerential Expression Networks in Chemosensitive and Chemoresistant Ovarian Cancer Shih-Yi Chao, A-Mei Huang
P075 Comparing Biological Networks via Graph Compression Morihiro Hayashida, Tatsuya Akutsu
P076 Prediction of Transcriptional Patterns of Gene Deletion Mutants by Modiﬁed Control Eﬀective
Flux Quanyu Zhao, Hiroyuki Kurata
P077 Construction of Transcriptional Regulatory Network during Rice Anther Development Luonan Chen, Wenjuan Zhang, Takashi Yamamoto, Shunsuke Okuzumi, Zhiping Liu
P078 Elucidation of Metabolic Pathway under the Inﬂuence of Gene Regulatory Network
Yuta Hamano, Kozo Nishida, Takuya Morimoto, Hiroki Takahashi, Md Altaf-Ul-Amin, Shigehiko Kanaya
P079 Kinetic Modeling of Central Metabolic Pathway for Phenotype MicroArray Analysis
Yusaku Mazaki, Hirotada Mori, Masahiro Ito, Yukako Tohsato
P080 A Method for the Inference of Gene Regulatory Networks based on Dynamic Bayesian Network with Clustering of Time-Series Subsequences Yuya Shuto, Shigeto Seno, Yoichi Takenaka,
Hideo Matsuda
T002/P081 Dissecting Protein-Protein Interaction-Mediated Cross-Talk Pathways in Hepatocellular Carcinoma Chia-Hung Liu, Chun-Nan Hsu, Cheng-Yan Kao, Minoru Kanehisa, Susumu Goto,
Chi-Ying F. Huang
P082 Estimating Dynamic Gene Networks Under Diﬀerent Biological Conditions Teppei Shimamura,Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Satoru Miyano
P083 Cancer Related Pathways are Enriched Among Common Human Targets in Viruses-Human
Interactions Dai-Shin Chen, Wen-Chih Cheng, Wan-Jing Lu, Chen-hsiung Chan
4

P084 Eﬀective Multi-Scale Graph Navigation System Powered by Fast and Biologically Meaningful
Hierarchical Clustering Thanet Praneenararat, Wataru Iwasaki, Toshihisa Takagi
P085 Robustness Analysis on Lateral Propagation Mechanism of EGF Signaling by L2 -induced Gain
Makoto Ogawa, Takashi Nakakuki
T004/P086 A Parallel Algorithm for Estimating Genome-Wide Gene Networks using Nonparametric
Bayesian Networks Yoshinori Tamada, Seiya Imoto, Hiromitsu Araki, Masao Nagasaki,
Satoru Miyano
P087 Active State Transition Diagram Analysis from Time Course Simulation Data: an HFPNe Approach Chen Li, Masao Nagasaki, Ayumu Saito, Satoru Miyano
P088 Network Based Analysis of Hepatitis C Virus Infection Lokesh Tripathi, Kohji Moriishi,
Yoshio Mori, Yoshiharu Matsuura, Yi-an Chen, Kenji Mizuguchi
P089 Gene Network Comparison by State Space Models Based on Time Course Microarray Data
Kaname Kojima, Rui Yamaguchi, Seiya Imoto, Mai Yamauchi, Masao Nagasaki, Ryo Yoshida,
Teppei Shimamura, Kazuko Ueno, Tomoyuki Higuchi, Noriko Gotoh, Satoru Miyano
P090 Sensitivity Analysis of MAPK-Induced Transcription Control of Fos Protein by using L2 -induced
Gain Hiroki Ishiyama, Takashi Nakakuki
P091 PGFeval: Software Tool and Web Server for Evaluation and Visualization of Proteogenomic
Features Mohamed Helmy, Masaru Tomita, Yasushi Ishihama
P092 Pathway Projector:
an Interactive Pathway Browser with Zoomable User Interface
Nobuaki Kono, Kazuharu Arakawa, Ryu Ogawa, Nobuhiro Kido, Kazuki Oshita, Keita Ikegami,
Satoshi Tamaki, Masaru Tomita
P093 Temporal Gene Expression Patterns Reveal Mass Conservation in TNF-α Signaling Kentaro Hayashi, Masaru Tomita, Masa Tsuchiya, Kumar Selvarajoo
P094 Reconstruction and Analysis of Integrated Metabolic Reaction Network of Bacillus Subtilis
Kozo Nishida, Hiroki Takahashi, Kensuke Nakamura, Md Altaf-Ul Amin, Shigehiko Kanaya
P095 Quantitative Cell Division Dynamics Information from Early C.elegans Embryos Koji Kyoda,
Eru Adachi, Junko Kuramochi, Kumiko Shimada, Shuichi Onami
P096 Robustness of Attractor in Complex Networks with Scale-Free Topology III Shu-ichi Kinoshita,
Kazumoto Iguchi, Hiroaki S. Yamada
P097 Gene Function Prediction via Discriminative Graph Embedding Canh Hao Nguyen, Hiroshi Mamitsuka
P098 Using Local Reaction Structure to Build a Global Metabolic Network Classiﬁer Timothy Hancock, Hiroshi Mamitsuka
P099 REST/SOAP Web Service API for G-language System Kazuharu Arakawa, Nobuhiro Kido,
Kazuki Oshita, Masaru Tomita
P100 Eﬃcient Computation of Impact Degrees for Multiple Reactions in Metabolic Networks with
Cycles Yang Cong, Takeyuki Tamura, Tatsuya Akutsu, Wai-Ki Ching
P101 Improvements to Proﬁle PSTMM for Glycan Recognition Proﬁle Prediction Sakiko Kaiya,
Masae Hosoda, Kiyoko F. Aoki-Kinoshita
P102 Semantic Classiﬁcation of Nouns in UMLS Using Google Web 1T 5-gram Aika Myosho,
Kenji Nakano, Yoichi Yamada, Kenji SatouP103 KBWS: an EMBASSY Package for Eﬀective Utilization of Bioinformatics Web Services
Kazuki Oshita, Kazuharu Arakawa, Masaru Tomita
P104 Classiﬁcation of Adrenergic Receptors Using the Multi-Dimentional Method Yasuhito Inoue,
Yuki Kinoshita, Jyunpei Seki, Ryosuke Hanbayashi
5

P105 Classiﬁcation of Neuroimaging Figures toward Automatic Figure Annotation System Natsu Ishii,
Asako Koike, Toshihisa Takagi
P106 Biomedical Figure Search Using Combination of Bag of Keypoints and Bag of Words
Asako Koike, Natsu Ishii, Toshihisa Takagi
P107 Mining Signiﬁcant Substructure-Substructure Pairs in Strucural Associations Ichigaku Takigawa,
Koji Tsuda, Hiroshi Mamitsuka
P108 Graph Summarization for Finding Relations of Protein Functions Aika Terada, Jun Sese
P109 Reliable Augmentation of Protein Interaction Data with Interologs for Protein Function Prediction Chern Han Yong, Limsoon Wong
P110 A New Approach to Analyzing DNA Microarray Data Using Principal Component Analysis JunIchi Sagara, Hideaki Koike, Yasunobu Terabayashi, Motoaki Sano, Noriko Yamane, Noriko Yamane, Mitsuko Dohmoto, Ken Oda, Eiji Ohshima, Kuniharu Tachibana, Yoshimasa Higa,
Shinichi Ohashi, Masayuki Machida
P111 FUJI Database Provides Functional and Structural Annotation of Proteins On Demand Keiichi Homma, Hideaki Sugawara
P112 MetalMine: a Database of Functional Metal-Binding Sites in Proteins Kensuke Nakamura,Aki Hirai, Hiroki Takayashi, Md. Altaf-Ul-Amin, Shigehiko Kanaya
P113 On-the-Fly Link Generation for Workﬂows in Biology Yeondae Kwon, Yasumasa Shigemoto,
Yoshikazu Kuwana, Hideaki Sugawara
P114 CaMPDB: a Resource for Calpain and Modulatory Proteolysis David A. du Verle, Ichigaku Takigawa, Yasuko Ono, Hiroyuki Sorimachi, Hiroshi Mamitsuka
P115 Incorporation of New Data and Development of User Management and Feedback System in
RINGS Junichi Araki, Masatoshi Shimahara, Anna Kokubu, Kiyoko F. Aoki-Kinoshita
P116 Consecutive Update of the Microbial Genome Re-Annotation Database, GTPS Takehide Kosuge,
Yasumasa Shigemoto, Yoshikazu Kuwana, Hideaki Sugawara
P117 SDOPDB: Comparative Standardized-Protocol Database for Mouse Phenotyping Analyses
Nobuhiko Tanaka, Kazunori Waki, Hideki Kaneda, Tomohiro Suzuki, Ikuko Yamada, Tamio Furuse, Kimio Kobayashi, Hiromi Motegi, Hideaki Toki, Maki Inoue, Osamu Minowa, Tetsuo Noda, Keizo Takao, Tsuyoshi Miyakawa, Tsuyoshi Koide, Shigeharu Wakana, Hiroshi Masuya
P118 FlyGlycoDB: a Database of Glycan-Related Genes and Proteins in Drosophila Kiyoshi Tadahisa,
Shoko Nishihara, Kiyoko F. Aoki-Kinoshita
P119 Omics Data Analysis Using SOP (Search of Omics Pathway) Web Tool Seung Yong Lee,
Jun-Sub Kim, Seung-Jun Kim, Ji-Hoon Kim, Hye-Won Park, Yu Ri An, Moon-Ju Oh, Seung Yong Hwang
T003/P120 DDBJ Read Archive and DDBJ Read Annotation Pipeline:An Archive Database and an Analytical Tool for Next-Generation Sequence Data Eli Kaminuma, Yuichi Kodama, Satoshi Saruhashi,
Takeshi Konno, Takako Mochizuki, Hidemasa Bono, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
P121 CyanoClust: Protein Cluster Database for Comparative genomics of Cyanobacteria and Plastids
Naoki Sato, Naobumi V. Sasaki
P122 Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data Using Gene Ontology Annotations Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi,
Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara
6

P123 Creation and Management of Information Platform in Targeted Proteins Research Program Hisashi Mizutani, Takao Iwayanagi, Keiichi Homma, Yoshie Ohno, Miyuki Konishi,
Haruki Nakamura, Junko Sato, Akihito Kaneko, Tomoakira Kawai, Hideaki Sugawara
P124 Reclassiﬁcation of Oxidoreductase Subclasses Based on the Relationships of Reductants and Oxidants Masaaki Kotera, Toshiaki Tokimatsu, Zen-ichi Nakagawa, Yuki Moriya, Masahiro Hattori,
Susumu Goto, Minoru Kanehisa
P125 INOH Pathway Database Noriko Sakai, Satoko Sakai, Hiromi Nakamura, KenIchiro Fukuda,
Toshihisa Takagi
P126 The New Version of MutationView : Enhanced Search Function and Signiﬁcant Increase in the
Number of Gene Entries Masafumi Ohtsubo, Kouichi Kawaguchi, Katsue Adachi, Tomoyoshi Horisawa, Nobuyoshi Shimizu, Shinsei Minoshima
P127 Structural Clustering of Plant Secondary Metabolite to Estimate Compound Classes Reﬂecting their Biosynthetic Pathway Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Shigehiko Kanaya, Minoru Kanehisa
P128 A Trial to Develop a Integrative Database of Mouse Phenotype Related Information Hiroshi Masuya, Norio Kobayashi, Nobuhiko Tanaka, Kazunori Waki, Kouji Kozaki, Shigeharu Wakana,Riichiro Mizoguchi, Tetsuro Toyoda
P129 The Ontology-Based Data Processing System for International Integration, Ontology and Data
Mining of Mouse Phenome Information Kazunori Waki, Hiroshi Masuya
P130 DMPD: Dynamic Macrophage Pathway Database Ayumu Saito, Masao Nagasaki, Andre Fujita,
Kazuko Ueno, Emi Ikeda, Satoru Miyano
P131 An Automatic Glyco-Work ow Generator in RINGS Daisuke Shinmachi, Kiyoko F. AokiKinoshita
P132 Constrained Clustering for Discovering High Binding Aﬃnity Glycan Substructures
Haruna Terai, Jun Sese
P133 A Method for Extraction of the Active Compound Groups which Have Strong Relationship between Structure and Activity Takahiro Kishimoto, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
P134 Extracting Common Substructures of GPCR Ligands Bekir Erguner, Masahiro Hattori,
Susumu Goto, Minoru Kanehisa
P135 Chemical Continuity of Reaction Centers along Successive Metabolic Reactions Masahiro Hattori, Masaaki Kotera, Ai Muto, Susumu Goto, Minoru Kanehisa
P136 Applied Method of Extending Van Krevelen Diagrams for Exhaustive Analysis of Metabolites
Kaori Matsuda, Md Altaf-Ul-Amin, Kensuke Nakamura, Hiroki Takahashi, Daisaku Ohta, Shigehiko Kanaya
P137 Structural Similarity-Based Approach to Characterize Crude Drug Components Ai Muto, Minoru Kanehisa
P138 Constructing Database of Epilepsy Genes and Mutations for Development of Genetic Diagnosis
System Shuichi Yoshida, Kazuaki Kanai, Toshio Shimizu, Sunao Kaneko
P139 Molecular Evolutionary Origins of the Adaptive Immune System in Gnathostomata JunIchi Kaneta, Masumi Itoh, Kanako O. Koyanagi, Hidemi Watanabe
P140 Spatiotemporal Sequence Analysis of Inﬂuenza Virus Sequences Chih-Jen Tai ,Tzu-Wen Chen,
Po-An Cheng, Chen-hsiung Chan

7