Biogenesis pathways of piRNAs loaded onto AGO3 in the Drosophila testis
Akihiro Nagao, Toutai Mituyama, Haidong Huang, Dahua Chen, Mikiko C. Siomi
and Haruhiko Siomi

Supplementary information
Table of contents:
Materials and Methods
Supplementary References
Supplementary Figures 1-6
Supplementary Tables 1-5

Materials and Methods
Western blotting
Western blotting was performed as described previously (Miyoshi et al. 2005).
GST-Aub and -AGO3 recombinant proteins were produced in and purified from E. coli
(Miyoshi et al. 2005, Gunawardane et al. 2007). Equal amounts of GST-Aub and
GST-AGO3 were loaded on a protein gel (×1, ×1/4 dilution, ×1/16 dilution, ×1/64
dilution) for a standard curve. Lysates from testis and ovary (40µg or 80µg ×2 each)were loaded on gels. Anti-GST-Tag antibody was obtained from Medical & Biological
Laboratories and used at 1:1000 dilution. After stripping of the antibody, anti-Aub(Nishida et al, 2007) and anti-AGO3 (Gunawardane et al, 2007) monoclonal antibodies
were used subsequently. Each band was quantified using image analysis software,
Quant mode, using Image Gauge Ver. 4.21 (FUJIFILM). The background levels of thesame lane was subtracted from the quantified values. The expression levels of Aub and
AGO3 proteins were compared with those of GST-Aub or GST-AGO3 (×1).

Quantitative RT-PCR
Quantitative RT-PCR was performed as reported previously (Saito et al.
2009). Total RNA from each sample (1µg) was used to reverse transcribe target
sequences using a Transcriptor First strand cDNA Synthesis Kit (Roche) according to
the manufacturer’s instructions. The resulting cDNAs were amplified with aLightCycler 480 SYBR Green I Master (Roche). The primers used are shown in
Supplementary Table 5.
Supplementary References:
Gunawardane LS, Saito K, Nishida KM, Miyoshi K, Kawamura Y, Nagami T, Siomi H,
Siomi MC. 2007. A slicer-mediated mechanism for repeat-associated siRNA 5' end
formation in Drosophila. Science 315: 1587-1590.
Miyoshi K, Tsukumo H, Nagami T, Siomi H, Siomi MC. 2005. Slicer function of
Drosophila Argonautes and its involvement in RISC formation. Genes & Dev. 19:
2837-2848.
Nishida KM, Saito K, Mori T, Kawamura Y, Nagami-Okada T, Inagaki S, Siomi H,
Siomi MC. 2007. Gene silencing mechanisms mediated by Aubergine piRNAcomplexes in Drosophila male gonad. RNA 13: 1911-1922.
Saito K, Nishida KM, Mori T, Kawamura Y, Miyoshi K, Nagami T, Siomi H, Siomi
MC. 2006. Specific association of Piwi with rasiRNAs derived from retrotransposonand heterochromatic regions in the Drosophila genome. Genes & Dev. 20: 2214-2222.

Supplementary Figure 1. Ping-pong signatures of Aub- and Ago3- associatedpiRNAs in testis are largely restricted to those corresponding to transposons.
Shown are the numbers of piRNAs that exhibit ping-pong signatures (black bars) withcomplementary 5’ 10-mers found in pairwise library comparisons (see Supplementary
Table 3). Among transposon-derived piRNAs in Aub, ~17% (4539 out of 26781 reads)
have ping-pong partner piRNAs, while ~27% (1761 out of 6535 reads) among

transposon-derived piRNAs in AGO3 have ping-pong partner piRNAs. Gray bars
indicate the numbers of piRNAs that do not have pairs with the ping-pong signature.
Supplementary Figure 2. The expression levels of transposons in aub, ago3 andpiwi mutant testes (upper panel) and ovaries (lower panel). The steady-state levelsof transcripts from transposons were measured by quantitative RT-PCR in testes orovaries of aub, ago3 and piwi mutants. Note that the expression of transposons was not
significantly up-regulated in ago3 and aub mutant testes with the exception of
F-elements. In piwi mutant testes, the expression of Idefix was highly up-regulated. The
expression levels were standardized in each heterozygous fly (aub/+, ago3/+, piwi/+:red line) testes or ovaries by qRT-PCR. The error bars show the mean ± SD for at least
three independent experiments.
Supplementary Figure 3. Nearly all Su(Ste) piRNAs that associate with Aub or
AGO3 correspond to a particular region, Su(Ste)-4, of the antisense strand ofSu(Ste). Most Aub-associated and AGO3-associated Su(Ste) piRNAs are Su(Ste)-4 andits variants with a 5’ deletion and/or a 3’ extension (see Supplementary Table 2). A:
Whole shot of the piRNA distribution on Su(Ste) (accession Z11734) is shown where
the blue bars correspond to the number of unique sequences (dark) or read number(light) of piRNAs from sense strand while the orange bars render the same scheme forantisense strand. Close-up of major hot spots is shown on panel B through F. B:
Close-up view of Su(Ste) region 1,172 to 1,214. Sequences showed in bubbles form
ping-pong pairs between sense and antisense piRNAs. Light green band represents
bases inside of ping-pong base pairs. C: Close-up view of Su(Ste) region 1,241 to 1,286.
Two adjacent ping-pong pair patterns are observed from this region. D: Close-up viewof Su(Ste) region 1,299 to 1,351. A ping-pong pair pattern is observed among lessactively transcribed piRNAs near the hottest spot. E: Close-up view of Su(Ste) region
1,487 to 1,531. One of the major hot spot is shown without observing ping-pong pair.
The sequence of Su(Ste)-6 piRNA (see Supplementary Figure 5) is indicated with
underline. F: Close-up view of Su(Ste) region 1,820 to 1,856. A ping-pong pair patternis observed.
Supplementary Figure 4. Virtually all AT-chX piRNAs that associate with Aub orAGO3 correspond to a particular region, AT-chX-1, of the antisense strand of
AT-chX. Aub-associated and AGO3-associated AT-chX piRNAs are AT-chX-1 and its
variants with a 5’ deletion and/or a 3’ extension (see Supplementary Table 4). (A)Whole shot of the piRNA distribution on AT-chX-A (chrX:21765977-21766248) isshown where the same color bar scheme employed in Supplementary Figure 3. (B)Whole shot of the piRNA distribution on AT-chX-B (chrX:21773610-21773780) is
shown. (C) Close-up view of a AT-chX-B region where a ping-pong pair pattern isobserved. The sequence of AT-chX-71 piRNA (see Supplementary Figure 5) is indicatedwith underline.
Supplementary Figure 5. Genetic requirements for production of Su(Ste) piRNAs. (A)The abundance of Su(Ste)-4 and AT-chX-1 piRNAs in testes was confirmed by Northernblot analysis. Total RNAs purified from testes were used for northern blotting using
DNA oligos recognizing indicated piRNAs. piRNAs [indicated as Su(Ste)-4 piRNA
sense] that pair with Su(Ste)-4 are hardly detected by northern blot analysis. We have
tried to find probes that detect piRNAs from the Su(Ste) locus other than Su(Ste)-4 andfound two; Su(Ste)-6 piRNA (as indicated in Supplementary Figure 3E) and Su(Ste)pair4 piRNA (as indicated in Supplementary Table 3) were detected by northern blots,
though weakly. We have tried to find probes that detect piRNAs from the AT-chX locus
other than AT-chX-1 and found only one; AT-chX-71 piRNA (as indicated in
Supplementary 4C) was detected by northern blots. (B) Accumulation of Su(Ste)-6,Su(Ste) pair4 and AT-chX-71 piRNAs in ago3 and aub mutant testes was analyzed bynorthern blotting. The membrane used in Figure 5A was reprobed with DNA oligos
used in (A). Both Su(Ste) piRNAs were not detected in testes from males lacking theSu(Ste) loci (6Ste, Ycry). In both ago3 and aub mutant testes, Su(Ste)-6, Su(Ste) pair4
and AT-chX-71 piRNAs were hardly detected. (C) Northern analysis of the Su(Ste)-6,Su(Ste) pair4 and AT-chX-71 piRNAs in testes mutant for piRNA pathway genes. The
membranes used in Figure 5C were reprobed with DNA oligos used in (A).
Sequences of oligos used for northern blotting are shown in Supplementary Table 5.
Supplementary Figure 6. The relative expression levels of Aub and AGO3 inwild-type (yw) testes were roughly determined. GST-tagged Aub and GST-tagged
AGO3 recombinant proteins and testis lysates (A) or ovary lysates (B) were probed with

anti-Aub, anti-AGO3 and anti-GST antibodies. Prior to loading on a protein gel, equalamounts of GST-Aub and GST-AGO3 were diluted 1:4, 1:16 and 1:64. Then the signals
from the GST fusion proteins were compared with the signals from Aub and AGO3
endogenously expressed in testes and ovaries. It should be noted that the ~1:16 dilutionof GST-AGO3 was equal to the amounts of AGO3 in the testis whereas the ~1:4
dilution of GST-AGO3 was nearly equal to half of the amount of AGO3 in the ovary. In
contrast, the starting amount of GST-Aub was nearly equal to half of the amount of Aubin the testis whereas the starting amount of GST-AGO3 was nearly equal to the amountof Aub in ovary. Quantification of the corresponding bands (Materials & Methods)
revealed that the expression level of AGO3 in the testis was about one tenth of that of
Aub, whereas the expression level of AGO3 in the ovary was about 40% of that of Aub.

Supplementary Table 1. Testis AGO3- and Aub-associated piRNAs that
correspond to transposons. Transposon-derived piRNAs were identified by using
Repeat Masker track and FlyBase natural transposon track. Sense/antisense wasdetermined by comparing the strand of the transposons in the tracks and its associatedpiRNA mapping strand.
Supplementary Table 2. Su(Ste)-4 piRNA and its variants. Listed are the numbers of
Aub- and AGO3-associated piRNAs that correspond to the Su(Ste) locus. Su(Ste)-4 andits variants comprised 87.0% of Su(Ste) piRNAs that associate with Aub and 66.8% of
Su(Ste) piRNAs that associate with AGO3.
Supplementary Table 3. Ping-pong pairs among AGO3- and Aub-associatedpiRNAs in testis. Some of the piRNAs associated with AGO3 and/or Aub in the testis
show complementarity to the first 10 nt of piRNAs associated with AGO3 and/or Aub.
Retrotransposons and other genomic regions from where the piRNAs arise are indicatedon the right. The sequence of Su(Ste)-pair4 piRNA (see Supplementary Figure 5) ishighlighted.
Supplementary Table 4. AT-chX-1 piRNA and its variants. Listed are the numbersof Aub- and AGO3-associated piRNAs that correspond to the AT-chX locus. AT-chX-1

and its variants comprised 90.6% of AT-chX piRNAs that associate with Aub and 92.6%
of AT-chX piRNAs that associate with AGO3.
Supplementary Table 5. Sequences of Primers used for qRT-PCR to examine
expression of transposons and oligos for northern blot analysis. All sequences areshown in the 5' to 3' direction.

St
e

)
AT
no
-c
hX
an
no
ta
t io
n

Su
(

at

so
n

pe

ne

A

(reads)

po

ns

re

ge

N

A

A

re

ge

A

ne

N

A

pe
at
ns
po
so
n
Su
(S
te
)
AT
no
-c
hX
an
no
ta
t io
n
t ra

ng

iR

A

N

N

cR

rR

m

A/
n

di

N

co

tR

(reads)

t ra

ng

N

N

iR

cR

rR

m

A/
n

di

N

co

tR

Supplementary Figure 1
Nagao et al.

30,000

AGO3
no pair

20,000pair

10,0000

Aub80,000no pair

60,000pair

40,00020,0000LTR elements

LINE elements

hopper2

LINE elements

hopper2

TART

R1

I-element

HelenaHet-A

F-element

Doc

roo

mdg1

Idefix

gtwin

Diver2

Stalker4

Stalker2

HMS-Beagle

412

1731

relative mRNA level
20

TART

R1

I-element

HelenaLTR elements

Het-A

F-element

Doc

roo

mdg1

Idefix

gtwin

Diver2

Stalker4

Stalker2

HMS-Beagle

412

1731

relative mRNA level

Supplementary Figure 2
Nagao et al.

A
testis25
aub -/-

ago3 -/-

piwi -/-

15

10

5

0

IR
elements

B
ovary

1000
aub -/-

ago3 -/-

100

10

1

0.1

IR
elements

Supplementary Figure 3
Nagao et al.

1,001

D

E

1,601

C

1,401

B

801

A

F

sense

20
10

2,201

2,401

2,601

2,801

2,201

2,401

2,601

2,801

2,001

1,801

0

1,201

601

401

201

1

0

10
20
30
40

Aub

50
110
120

antisense

130
140
150
160
170
180
190
200
210
250
260
270
280
290

61,768 (534)

3,798 (210)300
Z11734 Su(Ste)

990

1,774
Stellate-like

50

340 (46)

sense

40
30
20
10

0
10

antisense

20
30
40
50
60
70
80
90
100

2,293 (84)

2,001

1,801

1,601

1,401

1,201

801

601

401

201

1,001

AGO3

1

0

Supplementary Figure 3
Nagao et al.

Bpair 1

sense

1,172
10

UUCCUCGGAAUCAAGGGCAACGAGU 1,214

50
AG C AG C T GG A T C A A T T GG T T C C T C GG A A T C A AGGG C A A C G AG T
0
20
40

Aub

60
80

antisense

100
120
140
160
180
200
220

GUCGACCUAGUUAACCAAGGAGCCUUUCGACCUAGUUAACCAAGGAGCCUU
GUCGACCUGGUUAACCAAGGAGCCUUUCGACUUAGUUAACCAAGGAGCCUUUCGACCUAGUCAACCAAGGAGCCUUUCGACCUAUUUAACCAAGGAGCCUU
GUCGACCUAGUCAACCAAGGAGCCUUUCGACCUAGGUAACCAAGGAGCCUUCGACCUAGUUGACCAAGGAGCCUU
GUCGACUUAGUUAACCAAGGAGCCUU
CCUCGACCUAGUUAACCAAGGAGCCUU

240
260
280

sense

300
20
15

UUCCUCGGAAUCAAGGGCAACGAGUUUCCUCGGAAUCAAGGCCAACGAGU

1000antisense

AGO3

5
AG C AG C T GG A T C A A T T GG T T C C T C GG A A T C A AGGG C A A C G AG T

20
40
60
80

GUCGACCUAGUUAACCAAGGAGCCUUUCGACCUAGUUAACCAAGGAGCCUUUCGACCUAGUCAACCAAGGAGCCUUCGUCGACCUAGUUAACCAAGGAGCCUUUCGUCGACCUAGUCAACCAAGGAGCCUUCGUCGACCUGGUUAACCAAGGAGCCUUCGUCGAUCUAGUUAACCAAGGAGCCUU
GUCGACCUAGAUAACCAAGGAGCCUU

Supplementary Figure 3
Nagao et al.

Aubantisense

sense

C

pair 2
1,241
pair 51,286
10
50
T T T C A GG A C A C G T T C A G C C A G A T GGG C C T GG A G T A C T T C A G C C A G C
0
5
10UGAAAGUCCUGUGCAAGUUGGUCU15GAAAGUCCUGUGCAAGUUGGUCU
20 GAUUAAAGUCCUGUGCAAGUUGGUCU2530GUGCAAGUUGGUCUACCCGGACCU35UGUGCAAGUUGGUCUACCCGGACCUCUGUGCAAGUUGGUCUACCCGGACCU
40
45
50
30

sense

25
20
15
10

UUCAACCAGAUGGGCCUGGAGUACUUCUUCAACCAGAUGGGCCUGGAGUAUGGGCCUGGAGUACUUCAGCCAGA

AGO3

5
0

antisense

T T T C A GG A C A C G T T C A G C C A G A T GGG C C T GG A G T A C T T C A G C C A G C
0
10
20
30

UGUGCAAGUUGGUCUACCCGGACCUSupplementary Figure 3
Nagao et al.

D

sense

1,299

pair 3

1,351

10
5
0
CCTGAAGCCGGTGT T CGAC AGT T CCT CGGGCT TGT T CT ACGACGATGAGAAAAA

Aub0antisense

5
10

GGACUUCGGCCACAAGCUGUCAAG

15
20
25

10

UCGACAGUUCCUCGGGCUUGUUCUAC

50
CCTGAAGCCGGTGT T CGAC AGT T CCT CGGGCT TGT T CT ACGACGATGAGAAAAA

antisense

AGO3

sense

30

0
5
10
15
20
25
30

Supplementary Figure 3
Nagao et al.

E

sense

1,487

Su(Ste)-6

1,531

10
5
0

antisense

AGO3

sense

antisenseAub

G C C T C A G C G A T G T G T GGGG C T A G T C A A C GG T G A A G A T C T A C T G C C
0
50
100
150
200
250
1,000
2,000
3,000
4,000
15
10
5
0
G C C T C AG C G A T G T G T GGGG C T AG T C A A C GG T G A AG A T C T A C T G C C
0
10
20
30

Supplementary Figure 3
Nagao et al.

sensepair 4
1,820
1,856
10
5
0
AG T C AAGCGC T T C AA T G T T C T T C T AGGGA T GACG T GA
05
CAGUUCGCGAAGUUACAAGAAGAU
10UCAGUUCGCGAAGUUACAAGAAGAU
15
UCAGUUCGCGAACUUACAAGAAGAU
20
3
2
1
0

antisense

AGO3

antisense

Aub

sense

F

0
5
10
15
20

UGUUCUUCUAGGGAUGGCGUGAAAG T C AAGCGC T T C AA T G T T C T T C T AGGGA T GACG T GA

Supplementary Figure 4
Nagao et al.
A

0
5
210
220
230
240
15,00017,00019,000

1

51

101

251

chrX:21765977-21766248

sense

30
20
10
0
0

antisense

AGO3

201

19,059 (229)(229)
19,059AT-chX-A

1

51

101

151

10
110
120
130
5180
5190
5200

sense

B

C
1
0

Aub

0

1

51

101

151

antisense

50
100
150
19,059 (229)200

antisense

sense

AT-chX-B

AGO3

151

antisense

Aub

sense

5
0

chrX:21773610-21773780

8
6
4
2
0
0
5
10

1

51

101
5,197 (124)

151

201

251

Supplementary Figure 4
Nagao et al.
C

1
0
T A GC T T G T C A T A T T T A GA GA A A T T A C T GC CGGA A GCGA T C C C A C T GC T GA

0antisense

Aub

sense

AT-chX 71

50
100
150
200

sense

2
1
0
T A GC T T G T C A T A T T T A GA GA A A T T A C T GC CGGA A GCGA T C C C A C T GC T GA

antisense

AGO3

AT-chX-B

0
1
2
3
4
5

/ CyO/ TM3

Su(Ste)-6
sense piRNA
AT-chX 71
sense piRNA

Su(Ste) pair4
piRNA

B

Su(Ste)-6piRNA

Su(Ste) pair4
piRNA

AT-chX 71
piRNAC

squ PP32 / Df

aubHN2/QC42

AT-chX 71
piRNA

squ PP32 / CyO

Su(Ste)-6
piRNA

yw

AT-chX-1
sense piRNA

vas PH165 / Df

AT-chX-1
piRNA

1 fmol10 fmol

aubHN2/QC42yw

1 fmol10 fmol

DNA oligo

vas PH165 / CyO

Su(Ste)-4
sense piRNA

tud 1 / 1

tud 1/ CyO

piwi2/piwi2

piwi2/+

Su(Ste)-4
piRNA

krimp f06583 / f06583

krimp f06583/ CyO

spn-E 100.37 / 100.37

spn-E 100.37/ TM3

mael M391/ Df

mael

ago3t2/t3

ago3t3/+

aubHN2/QC42

DNA oligo

M391

zuc RS49 / Df

zuc

RS49

aubQC42/+WT

6Ste,YcryAarmi 1 / 72.1

armi 72.1/ TM3

WT

6Ste,Ycry

Supplementary Figure 5
Nagao et al.

Su(Ste)-6piRNA

Su(Ste) pair4
piRNA

AT-chX 71
piRNASupplementary Figure 6
Nagao et al.

1

1/4 1/16 1/64

GST-AGO31

1/4 1/16 1/64

GST-Aub
GST-AGO3

anti-GST
GST-Aub
GST-AGO3

Aub
AGO3

0.05

0.53

anti-AGO3

anti-Aubanti-Tubulin

GST-Aub
1

1/4 1/16 1/64

GST-AGO31

1/4 1/16 1/64

yw lysateovary
yw lysate

B

GST-Aub
GST-AGO3

anti-GST
GST-Aub
GST-AGO3

Aub

AGO3

1.07

anti-Aub0.42

anti-AGO3
anti-Tubulin

yw lysate×2

GST-Aubyw lysate

testisyw lysateASupplementary Table 1
Nagao et al.

AGO3-associated small RNAs
No.

Sequence

Read

1 UGUUUCAUCGUUAGACGGCUCGGGC

2642

Genome mismatch

0 AT-chX

Annotation (category)Annotation (detail1)

Annotation (detail2)

2 AAAACCUGAAGAUGAUCCUGAGUCGC

2229

0 transposon

LINE

Helena3 UGCUCUCGAAUGUAUGCCCGAUAU

2069

0 transposon

LINER1-element

4 UCUCAUCGUCGUAGAACAAGCCCGA

1670

0 Su(Ste)

Su(Ste)5 ACCCUGAACGCGCCCGAUCUCGUC

1655 no match

6 ACCCUGAACGCGCCCGAUCUCGU

1288 no match

7 ACCACCCUGAACGCGCCCGAUCUCGUC

1242 no match

8 GCACACAGAGGAGAGCAGAUGAGAGCA

1079 no match

9 ACUCGCCGAAUCCCGGGGCCGAGGGAGC

898 no match

10 UGUUUCAUCGUUAGACGGCUCGGG

875

0 AT-chX

AT-chX-B

11 AUGGCUCUCUCAGUCGCUUCCCGGGA

857

0 ncRNA

12 UGCUCUCGAAUGUAUGCCCGAUA

729

0 transposon

13 UGUUUCAUCGUUAGACGGCUCGGGCG

693

0 AT-chX

14 UGCUCUCGAAUGUAUGCCCGAUAUA

693

0 transposon

15 ACUCGCCGAAUCCCGGGGCCGAGGGA649 no match

16 ACCACCCUGAACGCGCCCGAUCUCGU

624 no match

17 GGAUCCUCAACUGUGAGGGGAUCCUCAA

621 no match

18 UGAGACUACAAACGGAUUGCGGACC

606

19 ACUCGCCGAAUCCCGGGGCCGAGGGAG

558 no match

20 AGCUUCAUCCAAGCGAACUGUGCCCGA

479

21 ACGAGUAAUAUGAGCGCCCAGAGU

441

22 UCAACUGUGAGGGGAUCCUCAA

438 no match

23 UGCUCUCGAAUGUAUGCCCGAUAUAC
24 AAAACCUGAAGAUGAUCCUGAGUC

AT-chX-B

rRNA
LINE

R1-element
AT-chX-B

LINE

R1-element

0 transposon

LINER1-element

0 transposon

LTR

opus

374

0 transposon

LINER1-element366

0 transposon

LINE

Helena25 AAAACCUGAAGAUGAUCCUGAGUCG

357

0 transposon

LINE

Helena26 UGUUUCAUCGUUAGACGGCUCGG

308

0 AT-chX

27 AAACCUGAAGAUGAUCCUGAGUCGC

283

0 transposon

LINE

Helena28 CCCGAAAGCAGACGAGGUAACGUACC

274

0 transposonLow̲complexity

F-element

29 AACUGAAUAAACGAAAUGGAUGACA

255

0 transposon

LTR

invader4

30 ACGAGUAAUAUGAGCGCCCAGAGUGA

241

0 transposon

LTR

opus

31 AAAAACCUGAAGAUGAUCCUGAGUCGC

241

1 transposon

LINE

Helena32 UUCAAGGUUACCCCAGGAUGCUGU

238

0 repeattrf

33 UACUUGUUCCCCGGAUAGUUUAGUUAC

234

0 ncRNArRNA

34 GUAACUUCGGGAUAAGGAUUGGCUCU

216

0 ncRNA

rRNA

35 ACUCGCCGAAUCCCGGGGCCGAGGG

211 no match

36 ACGAGCGCACGUGUUAGGACCCGAAA

201 no match

37 ACAUUCAUAACCGAGCGACUGUUCAA

188

38 AAGAGGGCGUGAAACCGUUAAGAGGU

182 no match

39 ACCGAAUUAAUCGCGAGGCUGCAAGA
40 UGUUUCAUCGUUAGACGGCUCGGGCGG
41 CACCCUGAACGCGCCCGAUCUCGUC

173 no match

42 CAACUGUGAGGGGAUCCUCAA

173 no match

43 AACUGAAUAAACGAAAUGGAUGAC

165

0 transposon

LTR

invader4

44 GCCGAACGUAGUCUCUCGAGAGCGA

164

0 transposon

LTR

invader1

45 AAGAGGGACGGCCGGGGGCAUUCGU

162 no match

46 CAAACCGAUAUGCUAUCUUGGCUGA

158

0 transposon

LINE

Doc

47 UGGGAACACCGCGUGUUGUUGGCCU

152

0 ncRNA48 UCUCAUCGUCGUAGAACAAGCCCG

151

0 Su(Ste)

49 ACCGAAUUAAUCGCGAGGCUGCAA

147

0 transposon

LTR

mdg3

50 AAGGAGUCUAACACGUGCGCGAGU

147 no match

51 CAAGCUAGACUAUGUAUCCCCGGGUAA

147

0 transposon

LINE

Doc

52 AAAACCUGAAGAUGAUCCUGAGUCGCA

143

0 transposon

LINE

Helena53 CCGAACUUGAGACCGCCCCUGGACGACC

139

0 Su(Ste)

54 CACCCUGAACGCGCCCGAUCUCGU

137 no match

55 AACUUCGGGAUAAGGAUUGGCUCU

131

0 ncRNA

56 UACGACGAGAACGAGAUCAGCGCGA

124

0 transposon

LTR

frogger

57 CAAACCAAUCCCAACCAAACCCGUCAA

123

0 transposon

LINE

G2

58 UUCAAGGUUACCCCAGGAUGCUGUGC

121

0 repeat59 AUCCUCAACUGUGAGGGGAUCCUCAA

115 no match

60 UUUGCAAAAACGAGAGCGAUAGAGC

113

0 transposon

LTR

micropia

61 GCCAAUUACAUUAGACGAGACGGCCC

111

0 transposon

LTR

opus

62 GUGGCUUUGAGAGGCGCCGUAGUUA

109

0 no annotation

63 AGCUUCAUCCAAGCGAACUGUGCCCG

104

0 transposon

LINER1-element

64 ACCCUUGAUAAACGGUUGACUUUCG

103

0 transposon

LINE

Rt1b

65 UGAGAUAUGCUAGCAGACUGGAGA

102

0 transposon

LINE

G2

66 UCGGCCCGAACCCUUCUGGUGUGU

102

0 transposon

LINEbaggins

67 AACUGAAUAAACGAAAUGGAUGACAC

101

0 transposon

LTR

invader4

68 AAGAGGGACGGCCGGGGGCAUUCG

99 no match

69 ACCCUUGAUAAACGGUUGACUUUC

98

0 transposon

LINE

Rt1b

70 UCGGCCCGAACCCUUCUGGUGUGUU

96

0 transposon

LINEbaggins

71 UAUGGCUCUCUCAGUCGCUUCCCGGGA

96

0 ncRNA

72 ACCCUACUGAUGAUGUGUUGUUGCC

96 no match

73 AACUGUGAGGGGAUCCUCAA

96 no match

74 GGUCCUGAGAGAUGGGCGAGCGCCGUUC

95 no match

75 ACGAGUAAUAUGAGCGCCCAGAG

94

0 transposon

76 UCUCAUCGUCGUAGAACAAGCCCGAGG

94

0 Su(Ste)

77 AGAGCAUAAAGACGACGAAAGUGAC

94

0 transposon

78 UUGGGAACACCGCGUGUUGUUGGCCU

93

0 ncRNA

79 UCGCCGAAUCCCGGGGCCGAGGGAGC

93 no match

80 UGCUCUCGAAUGUAUGCCCGAUAUU

93

0 no annotation

AT-chX-B

0 transposon

LTR

GATE

181

0 transposon

LTR

mdg3

175

0 AT-chX

1 transposon

AT-chX-B

5SrRNA
Su(Ste)Su(Ste)
rRNA

trf

rRNA

LTR

opus
Su(Ste)LINE

Doc35SrRNALINE

R1-element

81 CUCAACUGUGAGGGGAUCCUCAA

92 no match

82 GAUCCUCAACUGUGAGGGGAUCCUCAA

92 no match

83 UUCGAGAACAAACGAUACUGUUCGGC

91

0 transposon

LINE

G2

84 ACCGAAUUAAUCGCGAGGCUGCAAG

89

0 transposon

LTR

mdg3

85 AAUUCCGUAAACGAAGCCCAAAGU

89

0 transposon

LTR

Rt1c

86 UGGCUCUCUCAGUCGCUUCCCGGGA86

0 ncRNA

87 UGAUCUCGGAAGCUAAGCAGGGUC

86 no match

88 AAUACAUGCCGACGGGCGCUGACCCC

83 no match

89 CAGAUCAACAAAGUACGAUGGGGA

79

90 CACACAGAGGAGAGCAGAUGAGAGCA

78 no match

91 AGAGCAUAAAGACGACGAAAGUGACA

77

0 transposon

92 AAAGGAAUUGACGGAAGGGCACCACC

76

0 ncRNA

93 GAGGUAACGAUGGAGUUUGACGGC

75

0 transposon

LTR

flea

94 AAGGAGUCUAACACGUGCGCGAGUC

73 no match

95 AGCUUCAUCCAAGAGAACUGUGCCCGA72

0 transposon

LINER1-element

96 GUGGAGCCGGGCGUGGAAUGCGAGUG

72 no match

97 AUGGUUGCAACGGGUAACGGGGAAUC

72

0 ncRNA

98 CAAGAUAUGACCAAAGCAAAGACAC

71

0 transposon

99 GAUUCCGGAGAGGGAGCCUGAGAA

70

0 ncRNA

100 UGAGACUACAAACGGAUUGCGGACCG

69

0 no annotation

101 CAAGAUAUGACCAAAACAAAGACAC

68

0 transposon

102 CAACCAGAGAUCUAGAGGGCCCAA

66

0 no annotation

103 UCCUCAACUGUGAGGGGAUCCUCAA

65 no match

104 UAAACCGUCAUUCCAGCGCAAGUUGCCC

65

0 transposon

LTR

ninja-Dsim-like

105 AAAACCUGAAGAUGAUCCUGAGU

65

0 transposon

LINE

Helena106 CUGUGAGGGGAUCCUCAA

64

2 coding gene

107 GUGGCUUUGAGAGGCGCCGUAGUU

64

0 no annotation

108 UCCAAUAUCACCGCGGAGACUGUCGC

63

0 transposon

LINE

Doc4

109 GGCGGGUGUUGACGCGAUGUGAUU

63 no match

110 AAAAACCUGAAGAUGAUCCUGAGUC

63

1 transposon

LINE

Helena111 GGCGGGUGUUGACGCGAUGUGAUUU

63 no match

112 AAAACCUGAAGAUGAUCCUGAGUCGU

62

0 transposon

LINE

Helena113 GCAUUCGAGACCCAACGGCACGUGA

61

0 transposon

LINE

INE-1

114 AUGGCUCUCUCAGUCGCUUCCCGGG

60

0 ncRNA

115 UGCACUAAUAUAAGCCCUGACGUCCGA

60

0 transposon

LTR

G4

116 UGGGCCCGAACCCUUCUGGUGUGU

59

0 transposon

LINEbaggins

117 UCUCAUCGUCGUAGAACUAGCCCGA59

0 Su(Ste)

118 CAAGCUAGACUAUGUAUCCCCGGG

58

0 transposon

LINE

Doc

119 ACCCUUGAUAAACGGUUGACUUUCGG

58

0 transposon

LINE

Rt1b

120 GGCUUUGAGAGGCGCCGUAGUUACCAC

58

0 no annotation

121 ACCAACGGGAUACCUCAUACUCGAG

57

0 transposon

LTR

micropia

122 GUGGCUUUGAGAGGCGCCGUAGU

55

0 no annotation

123 GGCUUUGAGAGGCGCCGUAGUUACCACC

55

0 no annotation

124 CAAACCAAUCCCAACCAAACCCGUCAAA

54

0 transposon

LINE

G2

125 GCCCGGCUAGCUCAGUCGGUAGAGCAUGA

53

0 ncRNAtRNA

126 ACACGGGAAAACUUACCAGGUCCGAA

52

0 ncRNArRNA

127 GGUCCUGAGAGAUGGGCGAGCGCCGUU

52 no match

128 CCAGACGUAAUACUCCACUACCCGG

51

0 transposon

129 GGGUUCCGGGGGGAGUAUGGUUGC

51

2 ncRNA

130 CAAGCUAGACUAUGUAUCCCCGGGU

51

0 transposon

131 AACACGGGAAAACUUACCAGGUCCGAA

51

0 ncRNA

132 GGCUCAACUGUGAGGGGAUCUCAA

50 no match

133 AGCUUCAUCCAAGCGAACUGUGCCC

50

0 transposon

134 CACGGGAAAACUUACCAGGUCCGAA

50

0 ncRNA

135 AAACCAUUCGUAGACGACCUGCU

49 no match

136 UCGGCCCGAACCCUUCUGGUGUG

48

137 AUACCACCCUGAACGCGCCCGAUCUCGU

47 no match

138 ACCGAAUUAAUCGCGAGGCUGCA

47

139 AAUACAUGCCGACGGGCGCUGACCCCC

47 no match

140 ACGGGAAAACUUACCAGGUCCGAAC

46

0 ncRNA

141 CAACCAGAGAUCUAGAGGGCCCAAGA

45

0 no annotation

142 ACAUUCAUAACCGAGCGACUGUUCA

45

0 transposon

143 AGAUGUCCGGGGCUGCACGCGCGCUAC

45

1 ncRNA

144 ACAUUCAUAACCGAGCGACUGUUCAAUC

44

0 transposon

145 CCCAGAAACACAGUGUUUGACGCCAA

44

0 coding gene

146 GGAUCUCAACUGUGAGGGGAUCCUCAA

44 no match

147 UAAACCGUCAUUCCAGCGCAAGUUGCCCC

44

0 transposon

LTR

ninja-Dsim-like

148 CCACAGAGUACGGGGCUUACUGAAGUCA

43

0 transposon

LINEbaggins

149 UGUUUCAUCGUUAGACGGCUCGGGUCG

43

2 AT-chX

150 UGCUCUCGAAUGUAUGCCCGAUAAUU

43 no match

151 UACAUCGAAAAGCGAGUUGACGUGU

43

0 transposon

LTR

152 UCCGAAGAUAACGGGGAGCAGAGC

42

1 transposon

LTR

153 GCAGUUAUUACGACGAGAAGAUGGC

42

0 transposon

Unknown

154 ACGGGAAAACUUACCAGGUCCGAA

42

0 ncRNA

155 CCACCCUGAACGCGCCCGAUCUCGUC

41 no match

156 ACAACAAACAACACAUACCCGCUGG

41

0 transposon

LTR

GATE

157 GAAACCAUCAGACGCCUCCAGAGGAU

41

1 transposon

LINE

G

158 CACAGAGUACGGGGCUUACUGAA

41

0 transposon

LINEbaggins

159 CGCAAACCCAAAAUGACAAUGCACGA

40

0 no annotation

160 GCCGAACGUAGUCUCUCGAGAGCGAG

40

0 transposon

LTR

invader1

161 AAGAACAACAGUGCAGACGGCGCCCGC

40

0 transposon

DNA

H

162 CGAGAGAAGACUUUCACCCGAUGA

40

0 coding gene

CG12717-RA¦CG12717

163 CCGAGGCCCUGUAAUUGGAAUGAGUAC

40

0 ncRNA

rRNA

rRNA

0 no annotation
LINE

Doc3
rRNA

rRNA
LINE

Cr1a
rRNA

DNA

1360

CG13800-RA¦CG13800

rRNA

Su(Ste)LTR

HMS-Beagle
rRNA

LINE

Doc
rRNA

LINE

R1-elementrRNA

0 transposon

LINEbaggins

0 transposon

LTR

mdg3
rRNA

LTR

GATE
rRNA

LTR

GATE
CG18743-RA¦Hsp70Ab

AT-chX-B
Max
297
RR50960
rRNA

164 GACACAGAGGAGAGCAGAUGAGAGCA

40 no match

165 GUCUGGUUAAUUCCGAUAACGAACGA

39

0 ncRNA

166 AAAAACCUGAAGAUGAUCCUGAGUCG

39

1 transposon

167 AACUUCGGGAUAAGGAUUGGCUC

390 ncRNA

168 GCAUUCGAGACCCAACGGCACGUGACA

39

0 transposon

LINE

INE-1

169 GUAACAACGAAGAUGAUUCUGGCCC

39

0 transposon

LTR

invader4

170 CCAGACGUAAUACUCCACUACCCGGA

39

0 transposon

LTR

HMS-Beagle

171 UGUUUCAUCGUUAGACGGCUCGGGU

39

1 AT-chX

172 GCCAAUGAAAACUACACCCAGACGGA

38 no match

173 UGCUCUCGAAUGCUUGCCCGAUAUA

38

0 transposon

LINER1-element

174 CACAGAGUACGGGGCUUACUGAAGUCA

38

0 transposon

LINEbaggins

175 AAACCAUUCGUAGACGACCUGCUU

38 no match

176 UGCUCUCGAAUGUAUGCCCGAUAUUA

37

2 transposon

LINER1-element

177 UAACAAGAUGCAUACGAUGUGGC

37

0 transposon

DNA

178 UUCGAGAACAAACGAUACUGUUCGGCC

37

0 transposon

LINE

179 UAACUUCGGGAUAAGGAUUGGCUCU

36

0 ncRNA

180 GGGACAUGUGGCGUACGGAAGACCCGC

36 no match

181 GACAACCAGAGAUCUAGAGGGCCCAA

36

182 AAGGAGUCUAACACGUGCGCGAG

36 no match

183 UCCGAGGAACCAAUUGAUCCAGCUGC

36

0 Su(Ste)

Su(Ste)184 UCCUCGAUAGUAUAGUGGUUAGUAUCCC

35

0 ncRNAtRNA

185 UGUUUCAUCGUUAGACGGCUCGGGCGU

35

1 AT-chX

AT-chX-B

186 GCUUUAAUCACGAGCAAUGCGGUGA

35

0 no annotation

187 UCCGAAGAUAACGAGGAGCAGAGCU

35

0 transposon

188 GAUUCCGGAGAGGGAGCCUGAGA

35

0 ncRNA

189 ACGACGAGAAUGAGAUCAGCGCGA

35

0 transposon

190 UGAGACUACAAACGGAUUGCGGA

35

0 no annotation

191 AACUGAAUAAACGAAAUGGAUGACACA

35

192 CAAACCAAUCCCAACCAAACCCGUCA

34

193 AAGAGCAAUGGAUGAUAUUUUAAGAGA

rRNA
LINE

HelenarRNA

AT-chX-B

1360
G2
rRNA

0 no annotation

LTR

297
rRNA

LTR

frogger

0 transposon

LTR

invader4

0 transposon

LINE

G2

34

0 transposon

LTR

gypsy4

194 AUGGUUGCAACGGGUAACGGGGA

34

0 ncRNA

195 AGAGGGCGUGAAACCGUUAAGAGGU

34 no match

196 CACGGGAAAACUUACCAGGUCCGAAC

33

0 ncRNA

197 GGAACACGAAACGAAAGCCCCCUGU

33

0 transposon

198 CGCGGGCGGCCCGGGUUCGUUUCCC

33

1 ncRNAtRNA

199 UCCUCGAUAGUAUAGUGGUUAGUAUCCCC

33

0 ncRNAtRNA

200 CCGAACUUGAGACCGCCCCUGGACGA

33

0 Su(Ste)

201 UGCUCUCGAAUGUAUGCCCGAUAUUU

33

2 transposon

202 AUGGCUCUCUCAGUCGCUUCCCGG

33

0 ncRNArRNA

203 GUCUGGUUAAUUCCGAUAACGAACGAG

33

0 ncRNArRNA

204 UGAGACUACAAACGGAUUGCGGAC

33

0 no annotation

205 GGAUCAACUGUGAGGGGAUCCUCAA

33 no match

206 CUCGCCGAAUCCCGGGGCCGAGGGAGC

32 no match

207 CACUUCGAAACCAGGUGCCAGAGGG

32

208 AGAAACCUCCCGUGGAGCAGAAGGGC

32 no match

209 AUGGUUGCAACGGGUAACGGGGAAU

32

0 ncRNA

210 AAAACCUGAAGAUGAUCCUGAGUCGA

31

1 transposon

LINE

Helena211 GCAUUCAAUACAGCGAGAUGGCCCAU

31

0 transposon

LINE

Rt1a

212 ACAUUCAUAACCGAGCGACUGUUC

31

0 transposon

LTR

GATE

213 AAUUCCGUAAACGAAGCCCAAAGUU

31

0 transposon

LTR

Rt1c

214 UCCUGAGAGAUGGGCGAGCGCCGUU

31 no match

215 ACCCUACUGAUGAUGUGUUGUUGC

31 no match

216 CUACAUAUGGUUGAGGGUUGUA

310 ncRNArRNA

217 GUAACUUCGGGAUAAGGAUUGGCUCUG

30

0 ncRNArRNA

218 CCGAGGCCCUGUAAUUGGAAUGAGUA

30

0 ncRNArRNA

219 CAACCAGAGAUCUAGAGGGCCCAAG30

0 no annotation

220 AAUUCCGAUAACGAACGAGACUCUGGC

30 no match

221 UGCUUGGACUACAUAUGGUUGAGGGUU300 ncRNA

222 UCCGAAGAUAACGAGGAGCAGAGC

30

0 transposon

223 CCGAACUUGAGACCGCCCCUGGACGAC

30

0 Su(Ste)224 ACCAACGGGAUACCUCAUACUCGAGU

30

0 transposon

225 GUGGAGCCGGGCGUGGAAUGCGAGU

30 no match

226 UCGCAAAAGUUGACCGAACUUGA30

0 ncRNA

227 UACACACUCAUCAACCAAAGGACGUA

30

0 no annotation

228 ACCACCCUGAACGCGCCCGAUCUCG

30 no match

229 AACCAAAGCUUUUGGGCUCCGGGG

290 ncRNA

230 GAAACCGUCAUUCCAGCGCAAGUUGCCC

29

1 transposon

LTR

ninja-Dsim-like

231 CCCUUGAUAAACGGUUGACUUUCGG

29

0 transposon

LINE

Rt1b

232 ACAUUCAUAACCGAGCGACUGUUCAAU

29

0 transposon

LTR

GATE

233 UCAACUGUGAGGGAUCCUCAA

29 no match

234 AGUCGGUCCUGAGAGAUGGGCGAGCGC

29 no match

235 GCAUUCGAGACCCAACGGCACGUGAU

29

1 transposon

LINE

INE-1

236 CACGCAGUUACCGACCGUUGUGUCUG

29

0 transposon

LINE

Rt1a

237 CCCUGAACGCGCCCGAUCUCGUC

29 no match

238 AAACCUGAAGAUGAUCCUGAGUCG

29

0 transposon

LINE

Helena239 GCGCCGGGCCGUACCCAUAUCCGCAGC

29 no match

240 GCCCGGAUAGCUCAGUCGGUAGAGCAUUG

29

0 ncRNA

241 UCGGCCCGAACCCUUCUGGUGUGUUG

28

0 transposon

LINEbaggins

242 AAACCUGAAGAUGAUCCUGAGUC

28

0 transposon

LINE

Helena243 GGUCCUGAGAGAUGGGCGAGCGCCGUUCC

28 no match

244 GCAUUCAAUACAGCGAGAUGGCCCA

28

0 transposon

LTR

Quasimodo

245 AGAUGUCCGGGGCUGCACGCGCGCU

28

1 ncRNA

246 CCACCCUGAACGCGCCCGAUCUCGU

28 no match

0 transposon

rRNA
rRNA
LINE

Rt1a

Su(Ste)LINE

LINE

R1-element

Doc
rRNA

rRNA
LTR

297
Su(Ste)LTR

micropia
rRNA

rRNA

tRNA

rRNA

247 CGCAAACCCAAAAAGACAAUACACGAC

28

0 repeat

248 GCAUUCAAUACAGCGAGAUGGCCC

28

0 transposontrf

249 GGAUCCUCAACUGUGAGGGGAUCUCAA

27 no match

250 UCUCAUCGUCGUAGAACAAGCCCGG

27

1 Su(Ste)251 AACCUAAUCACGUUCGGUGCCCGA

27

0 transposon

252 UCAAGAAUAACAGGACCAUCCAAGAGU

27

0 no annotation

253 GCCCAGCUUCCCGGACAUCUUCUUC

27

0 repeat

254 ACCAGAGAUCUAGAGGGCCCAAGA

27

0 no annotation

255 UAGAGAGUGAUGCCGAGUAUAAA

27

0 repeattrf

256 GUGUAACAACUCACCUGCCGAAGC

27

0 ncRNArRNA

257 UAUGGCUCUCUCAGUCGCUUCCCGGG

270 ncRNArRNA

258 AGAACCUGAAACCGUAUGCGUAC

27 no match

259 GUGAGGUCUCCGGACGUGAUCACUG

27

0 ncRNArRNA

260 ACGGAAGACCCGCUCCCCGGCGCC

27 no match

261 CAAGCUAGACUAUGUAUCCCCGGGUA

27

0 transposon

LINE

Doc

262 CAAGAUAUGACCAAAGCAAAGACA

27

0 transposon

LINE

Cr1a

263 GCUUUAAUCACGAGCAAUGCGGU

26

0 no annotation

264 CCCGGGGCGUUCUAUAUAGUUAUGUAU

26

0 ncRNA

265 CCCGAAAGCAGACGAGGUAACGUAC

26

0 transposonLow̲complexity

F-element

266 UUCAGAGAUUCUCGAGCUUCAGUCGCC

26

0 transposon

LTR

ninja-Dsim-like

267 GGCGAGAUGGGUGACAGCCCCGUACGG

26 no match

268 GUUCCUCGGGAUCAAGGGCAACGAGUU

25

269 GGAGUGCCCUUCGUCCUGGGAAACGGGGC

25 no match

270 UUCCGGAGAGGGAGCCUGAGAAAC

25

0 ncRNA

271 ACAAACAGAAUUCCCGAAUGAGAG

25

0 transposon

LINE

Cr1a

272 CCCUUGAUAAACGGUUGACUUUCG

25

0 transposon

LINE

Rt1b

273 GUGGAAGUUACCGAUGACUUGGGAC

25

0 transposon

LTR

rooA

274 AGAGCAUAAAGACGACGAAAGUGA

25

0 transposon

LINE

Doc3

275 AAUGGGGCGAAGCUACCAUCUGUGGGAU

25 no match

276 AUGGCUCUCUCAGUCGCUUCCCGGGAA

25

0 ncRNA

277 UACGACGAGAACGAGAUCAGCGCGAU

25

0 transposon

LTR

frogger

278 CACAGAGUACGGGGCUUACUGAAGUC

25

0 transposon

LINEbaggins279 GUUCCUCGGGAUCAAGGGCAACGAGU

25

0 coding gene

280 AACUCAACUGUGAGGA

25

1 no annotation

281 GAGAGUGGACGGGAGCGGCGGGGGCG

24 no match

282 UGUUUCAUCGUUAGACGGCUCGGGUC

24

2 AT-chX

283 ACGGAAUGGAAUCGAGCGCUGAGU

24

0 transposon

LINE

X

284 CAGUCGCGAAAUUGGUAUCCCCGAU

24

0 transposon

LTR

diver2285 ACCCUUGAUAAACGGUUGACUUUCGGC

24

0 transposon

LINE

Rt1b

286 UGGGAACUCUAAUGGGACUGCCGGU

24 no match

287 UCCGGAGAGGGAGCCUGAGAAACG

24

0 ncRNArRNA

288 UUCUCAUCGUCGUAGAACAAGCCCGA24

0 Su(Ste)

Su(Ste)289 GUGUAACAACUCACCUGCCGAAGCA

24

0 ncRNArRNA

290 AAACCAAAGCUUUUGGGCUCCGGGGGA

230 ncRNArRNA

291 UUCAACCGGACGGGCCUAGAGUUA

23

0 coding gene

CG40635-RA¦CG40635

292 GGCUUUGAGAGGCGCCGUAGUUACCACCC

23

0 no annotation

293 UGGCUUUGAGAGGCGCCGUAGUUA

23

0 no annotation

294 AGCAAUUCUAGAGAACGAAAGCGAG

23

0 transposon

LTR

flea

295 ACGAGCGCACGUGUUAGGACCCGAAAGA

23 no match

296 UCCCCGCGGAAAGACGGAAAGACCCCAUG

23 no match

297 CAAACCAAUCCCAACCAAACCCGUC

23

0 transposon

LINE

G2

298 CACAGAGUACGGGGCUUACUAAA

23

0 transposon

LINEbaggins

299 CCCAGCUCGGGGAGGUAGUGACGA

23

0 ncRNArRNA

300 ACGCGGGCGGCCCGGGUUCGUUUCCC

23

1 ncRNAtRNA

301 ACCCUACUGAUGAUGUAUUGUUGCC

23 no match

302 CUGGAUACUAGGUAUCGACGCCGA

23

0 no annotation

303 GUUGCAAUUAAACAGAUUCCGCAGUGC

230 Su(Ste)

Su(Ste)304 GAGUACUUCAGCCAGACACUGGAC

23

0 Su(Ste)

Su(Ste)305 GAACCACUUUCAUGCUUGGGAUU

220 ncRNA

306 ACCGAAUUAAUCGCGAGGCUGCAAGAC

22

0 transposon

307 CGCAAAAGUUGACCGAACUUGAU

220 ncRNA

308 AACGAGUGUUAUUGUGGGCCGGUACU

22

0 ncRNA

309 GCAUUCGAGACCCAACGGCACGUGAUA

22

1 transposon

LINE

INE-1

310 CACAGAGUACGGGGCUUACUAAAGUCA

22

0 transposon

LINEbaggins

311 UGCCGAACGUAGUCUCUCGAGAGC

22

0 transposon

LTR

invader1

312 UGCUCUCGAAUGUAUGCCCGAUAUC

22

1 transposon

LINER1-element

313 UCCGAAGAUAAGUGCAGUUGGAAA

22

2 transposon

LTR

ninja-Dsim-like

314 AGCCCGUGGACGGUGUGAGGCCGGU

22 no match

315 UUCCGAGGAACCAAUUGAUCCAGCUGC

22

0 Su(Ste)

Su(Ste)316 UGUUUCAUCGUUAGACGGCUCGGGCGGA

21

0 AT-chX

AT-chX-B

317 AAUGAAGCGCGGGUAAACGGCGGGAGU

21 no match

318 CCCAGCUCGGGGAGGUAGUGACGAAAA

210 ncRNA

319 CAAACCGAUAUGCUAUCUUGGCUGAU

21

0 transposon

320 AAAACCUAGAAGAUGAUCCUGAGUCGC

21 no match

321 CCGAACUUGAGACCGCCCCUGGA

21

0 Su(Ste)

322 CCCGGGGCGUUCUAUAUAGUUAUGUAUA

21

0 ncRNA

323 GCCAAUUACAUUAGACGAGACGGCC

21

0 transposon

324 UGGAAGGGCCAGUGCUUCAUGUC

20

1 no annotation

325 AACGCGCCCGAUCUCGUCUGAUCU

20 no match

326 AACUACUGGACCAGAUGAUAGAGGGC

20327 GCAUUCGAGACCCAACGGCACGUGAC

20328 CAACCAGAGAUCUAGAGGGCCCA

20

0 no annotation

329 AGCUGGGACUGAGGACUGCGACGU

20 no match

LTR

Quasimodo
Su(Ste)

LINE

Rt1a
trf

rRNA

0 coding gene

CG40635-RA¦CG40635
rRNA

rRNA

CG40635-RA¦CG40635

AT-chX-B

rRNA
LTR

mdg3
rRNA
rRNA

rRNA
LINE

Doc
Su(Ste)
rRNA

LTR

opus

0 transposon

Unknown

RR50960

0 transposon

LINE

INE-1

330 CCUACAUGGAGACAUCACCGUUGG

20

0 transposon

331 ACUUCGGGAUAAGGAUUGGCUCU

20

0 ncRNA

332 GGCUUUGAGAGGCGCCGUAGUUA

20

0 no annotation

333 AGUCGGUCCUGAGAGAUGGGCGAGC

20 no match

334 UCUCAUCGUCGUAGAACAAGCCCGAU

20

1 Su(Ste)335 GCCAAUUACAUUAGACGAGACGGC

19

0 transposon

336 AACACGGGAAACCUCACCCGGCCCGGAC

19 no match

337 GGACCUCAACUGUGAGGGGAUCCUCAA

19 no match

338 AGAACUGGCGCUGCGGGAUGAA

19

1 ncRNA

339 AAGACAAUUAUCCGAUACCGCUUAUC

19

0 transposon

340 UGUGAGGGGAUCCUCAA

19

2 coding gene

CG13800-RA¦CG13800

341 GGCGGGGCGCGGGACAUGUGGCGU

19 no match

342 UUCAAGGUUACCCCAGGAUGCUGUG

19

0 repeattrf

343 AGAUCCCCGAAUCCGGAGUGGCGGAG

19 no match

344 UCCGAUUUCAAGUACCAGGCGAAC

19

0 repeat

345 UACUAAUUCAUCUCAGCCGGUACG

19

0 transposon

LINE

F

346 CAGAACUUGAAGUCGCCGAGGCAGC

19

0 transposon

LINE

F

347 AAAGGAAUUGACGGAAGGGCACCAC

19

0 ncRNA

348 GAAGCCCAAACGUGAACCAGGUUCGU

19

0 transposon

Unknown

RR50960

349 ACGAAAAUGAUCGAGUGGAUAUACAGA

19

0 transposon

LTR

McClintock

350 GCUGAACGUAGUCUCUCGAGAGCGA

19

1 transposon

LTR

invader1

351 AGCUUCAUCCAAGCGAACUGUGCCCGU

19

1 transposon

LINER1-element

352 UAGCUAAUUAACACAAUCCCGGGGC

190 ncRNArRNA

353 UAGAGAGUGAUGCCGAGUAUAAAA

19

0 repeattrf

354 CGGCUCAUCUCAUCCUGGGGCUGU

19 no match

355 CUUGUUCCCCGGAUAGUUUAGUUAC

19

0 ncRNArRNA

356 GGAGCCGGGCGUGGAAUGCGAGUGCCU

18 no match

357 UGCUCUCGAAUGUAUGCCCGAUAUAU

18

358 AGACGUGGCGACCCGCUGAAUUU

18 no match

359 AGGAAUUGACGGAAGGGCACCACC

18

360 ACCACCCUGAACGCGCCCGAUCUC

18 no match

361 AAGAGGGCGUGAAACCGUUAAGAGG

18 no match

362 ACUCGCCGAAUCCCGGGGCCGAGGGAGCG

18 no match

363 GAUUCCGGAGAGGGAGCCUGAGAAAC

18

0 ncRNA

364 UACGACGAGAACGAGAUCAGCGCG

18

0 transposon

LTR

frogger

365 GAGGCAAUCACCGAGAGCAUCAACGGC

18

0 transposon

LINE

F

366 AGUGAGGUCUCCGGACGUGAUCACUG

18

0 ncRNArRNA

367 UGGGUUCCGGGGGGAGUAUGGUUGC

18

2 ncRNArRNA

368 AGCACACAGAGGAGAGCAGAUGAGAGCA

18 no match

369 UCAAGAAUAACAGGACCAUCCAAGA

18

0 no annotation

370 UAUACCGUUACCUUCACCACCUGGC

180 transposon

LINE

Doc4

371 UUCGAGAACAAACGAUACUGUUCGG

18

0 transposon

LINE

G2

372 CUGUUAAGAAACCACUCGAGCCGCC

18

0 transposon

LINE

Doc4

373 AGAACUGGCGCUGCGGGAUGAACC

18

1 ncRNA

374 AAUACAUGCCGACGGGCGCUGACCCCCU

18 no match

375 ACCCUUGAUAAACGGUUGACUUUCGU

18

1 transposon

376 CGCAAACCCAAAAAGACAAUACACGA

18

0 repeat

377 AAAACUGAUAGACAGAUGGACGGAGC

18

0 Su(Ste)

378 CGCUAGCUCAUUUCCCGGGAUGUU

18

0 transposon

LINE

Fw2

379 ACCCUGAACGCGCCCGAUCUCGUCU

18 no match

380 ACCAACGGGAUACCUCAUACUCGAGUA

18

0 transposon

LTR

micropia

381 AUCCUCAACUGUGAGGGAUCCUCAA

18 no match

382 GAGGUCUCCGGACGUGAUCACUGU

180 ncRNA

383 UGCACUAAUAUAAGCCCUGACGUCCG

18

0 transposon

384 AAGGAAUUGACGGAAGGGCACCACC

17

0 ncRNA

385 GCAUUCGAGACCCAACGGCACGUGACAC

17

0 transposon

386 UUGUUCCCCGGAUAGUUUAGUUAC

17

0 ncRNArRNA

387 ACGAGCGCACGUGUUAGGACCC

17 no match

388 ACUGUGAGGGGAUCCUCAA

17 no match

389 GCCUGAUGACCAUAGCGAGUUGGUACCA

17 no match

390 GCGGGCGGCCCGGGUUCGUUUCCC

17

1 ncRNAtRNA

391 AAACGAGUGUUAUUGUGGGCCGGUACU

17

0 ncRNArRNA

392 CAGAACUGGCGCUGUGGGAUGAA

17

0 ncRNA

393 GAAGAAGAGAUGCCCAGUGAGUUU

17

0 transposon

LTR

ninja-Dsim-like

394 CUGGCAUUUAUACAGUGCAUUGGACU

17

0 transposon

LINEbaggins

395 UCUCAUCGUCGUAGAACAAGCCCGU

17

1 Su(Ste)

396 UGCUCAUUCCGAACAUACACCGACAA

17

0 transposon

LINE

Doc

397 CGAGCACAACAGAUCUCACAGGUCGGC

17

0 transposon

LTR

gypsy3398 CAAGAUAUGACCAAAACAAAGACA

17

0 transposon

DNA

399 GCGGGAUUAUUACAGAUGAUGGAUCA

17

0 transposon

DNA

H

400 UGCUCUCGAAUGUAUGCCCCGAUAU

17 no match

401 CGAACAACGAGACCACGUGUUGCA

17

0 transposon

LTR

HMS-Beagle

402 AGCUUCAUCCAAGCGAACUGUGGCCGA

17

0 transposon

LINE

R1

403 UGAGGGGAUCCUCAA

17

1 no annotation

404 GUGCGGAGUGCCCUUCGUCCUGGGAA

17 no match

405 CAGAGCAUUAAUCAAGACCGACCAGG

17

0 transposon

LTR

flea

406 UGCCAGGCCCGUAUAACGUUAAUGAUU

17

0 ncRNArRNA

407 AUAAUAAUAAAUAAAAGGUGACCGGC

17

0 AT-chX

AT-chX-A

408 AGAAAGCACCGUUUCCCGUCCGAUC

17 no match

409 GCCCGCGUCUGAUUAGCUAGUUGGUGA

17 no match

410 GGAUCAGCUGUGAGGGGAUCCUCAA

17 no match

411 UCUCAUCGUCGUAGAACAAGCCCGAA

17

0 Su(Ste)

412 CAGUUCAUCAAAUCGCCUUACUG

17

1 transposon

1 transposon

LINE

G2
rRNA

Su(Ste)
LTR

opus

rRNA
LTR

flea

RSP

rRNA

LINE

0 ncRNA

R1-element
rRNA

rRNA

rRNA
LINE

Rt1b
trf
Su(Ste)

rRNA
LTR

G4
rRNA

LINE

INE-1

rRNA

Su(Ste)1360

Su(Ste)LTR

flea

413 ACUUCAUAACCGAGCGACUGUUCAA

16

2 transposon

LTR

GATE

414 GGCUGCAAUUGUUUCCCGUGGGAC

16

0 transposon

LINEbaggins

415 UUCGAUUCCGGAGAGGGAGCCUGAGA

16

0 ncRNA

416 AGCUUCAUCCAAGAGAACUGUGCCCG

16

0 transposon

417 AAGCUUAUCCUUUGCUUGAUGAUUCGA

16

0 ncRNA

418 CUUGUUCCCCGGAUAGUUUAGUUA

160 ncRNA

419 AAUUCCGUAAACGAAGCCCAAAGUUC

16

0 transposon

LTR

420 AGCCGGACGGUGGCCAUGGAAGUCGGA

16 no match

421 UCGGUGGCGAAGUUGGCUCAGAAG

16

1 transposon

LTR

422 CCUCAACUGUGAGGGGAUCCUCAA

16 no match

423 UCGGGAUAAGGAUUGGCUCUGAAG

16

0 ncRNA

424 ACCAAAGCUUUUGGGCUCCGGGG

160 ncRNA

425 ACCGAAUUCAUCGCGAGGCUGCAAGA

16

1 transposon

426 GGGGACGGCGGAGCGAGCGCACGGGGU

16 no match

427 GUCUGGUUAAUUCCGAUAACGAACGAGA

16428 GAGCGCACGUGUUAGGACCCGAAA

16 no match

429 CAAACCAAUCCCAACCAAACCCGU

16

0 transposon

LINE

G2

430 UCCCCUCUAAGACGUGCAACCGCGAAU

16

0 transposon

LTR

gypsy6431 ACCAAGAUCAUCAACCCGUGUUA

16

0 transposon

LINE

Cr1a

432 AGCGUCCGACGAAUACCCUGGGG

16 no match

433 GGGCGAAGCUACCAUCUGUGGGAUU

16 no match

434 AGGAGUCUAACACGUGCGCGAGUC

16 no match

435 CGAGAUGUUCAACUACACGGAUUCGCC

16

0 transposon

LTR

3S18

436 UGAGACUACAAACGGAUUGCGGACCGG

16

0 no annotation

437 CCAGACGUAAUACUCCACUACCCGGAC

16

0 transposon

LTR

HMS-Beagle

438 GGGCUCCGGGGGAAGUAUGGUUGC

160 ncRNA

439 GCCCGAUGUCCGCGAGAUUGCCGC

16

0 transposon

440 GUGGCUUUGAGAGGCGCCGUAGUUU

16

1 no annotation

441 AGAACCAUCACUGGGGCACCGUGG

16

0 transposon

442 CAGAUCAACAAAGUACGAUGGGGAA

16

0 no annotation

443 GCCCCAGUGGCCUAAUGGAUAAGGCAUC

160 ncRNA

444 AGAGCAUAAAGACGACGAAAGUGACAC

15

1 transposon

LINE

Doc3

445 GAACUGGCAACAAAUUGAGCCCAACA

15 no match

446 CCAAGAAAAAUCCCAGACCUGAUCGA

15

0 transposon

LINE

Doc

447 CAACUGUGAGGGAUCCUCAA

15 no match

448 CCAGAUGAUAUUCCGAAAACAGCCGU

15

0 transposon

LINE

Doc4

449 AGAUGUCCGGGGCUGCACGCGCGC

15

1 ncRNArRNA

450 AUACCACCCUGAACGCGCCCGAU

15 no match

451 UGUUUCAUCGUUAGACGACUCGGGC

15

1 AT-chX

AT-chX-B

452 CUUCGGGAUAAGGAUUGGCUCUGAA

15

0 ncRNA

453 CAGGAAUCAAGGUGGCUAAGAGGA

15

0 transposon

LTR

ninja-Dsim-like454 AAAAUUACAAAGACGACGGCCCACC

15

0 transposon

LTR

springer

455 AAUACAUGCCGACGGGCGCUGACCC

15 no match

456 CACAGAGUACGGGGCUUACUGAAGUCAG

15

0 transposon

LINEbaggins

457 AACCACCCUGAACGCGCCCGAUCUCGUC

15 no match

458 AACCUGAAGAUGAUCCUGAGUCGC

15

0 transposon

LINE

Helena459 UUUGCAAAAACGAGAGCGAUAGA

15

0 transposon

LTR

micropia

460 GGCACAAUUACCAGAAGAUGUGGA

15

0 transposon

LINE

Cr1a

461 UGGGACUCAAAGAAACAAUCAGUGGU

15

0 transposon

LTR

DM88

462 CACGGCGAUGGUACUGCACUCGGUAGG

15 no match

463 GAUGUCGUAUCACCCAGGACGUUCGA

15

0 transposon

LINE

Rt1b

464 AGUGAGGUCUCCGGACGUGAUCACU

15

0 ncRNA

465 CGUACACAUAUUUCGCAACGUGAC

15

0 repeat

466 GCAUUCGAGACCCAACGGCACGUGACAU

15

1 transposon

LINE

INE-1

467 GCCCGAUGCCGACGCUCAUCAGACCCC

15 no match

468 CACAGAGUACGGGGCUUACUGAAG

15

0 transposon

LINEbaggins

469 AGAAUUCACCAAGCGUUGGAUUGUUC

15

1 ncRNA

470 AACCAAGCGCGGGUAAACGGCGGGAGU

15 no match

471 AACGCAGGUGUCCUAAGGCGAGCUC

15 no match

472 AGCACGGGAGACACACGGCGGGUGCU

15 no match

473 GCCGAACGUAGUCUCUCGAGAGCGAA

15

1 transposon

474 AACCAAAGCUUUUGGGCUCCGGGGGA

150 ncRNArRNA

475 GUUCCUCGGGAUCAAGGGCAACGAG

15

0 coding gene

CG40635-RA¦CG40635

476 GCUCCGGGGGAAGUAUGGUUGC

150 ncRNA

477 CCCAAACGCAGACAUCGAGCGGUCAA

15

0 transposonLow̲complexity

F-element

478 UGCACAUUAAGUUUUGAUCGCCGA

14

0 transposon

LTR

invader1

479 UGAGAUAUGCUAGCAGACUGGAG

14

0 transposon

LINE

G2

480 ACUGUGAGGGGAUCCUCAACUGUGUCAA

14 no match

481 UAGACAGAAAAUAAGGGGACACGC

14

0 transposon

LTR

opus

482 GGAGAGGUGGCAGAGUGGUCGAAUGU

14 no match

483 UCUCAUCGUCGUAGAACAAGCCCGAG

14

0 Su(Ste)

484 UGCUCCCGAAUGUAUGCCCGAUAU

14

1 transposon

LINER1-element

485 AAGGCUAAAUACCGGCACGAGACCGAU

14 no match

486 ACGGAAUGGAAUCGAGCGCUGAGUAU

14

1 transposon

LINE

X

487 CGUGACCUGAUUCAUCGCAGUUCCAGC

14

0 transposon

LINE

Circe

488 CAUGGCCGUUCUUAGUUCGUGGA

14

0 ncRNArRNA

489 GAUUCCGGAGAGGGAGCCUGAGAAA

140 ncRNArRNA

490 GCCUGAUGACCAUAGCGAGUUGGUAC

14 no match

491 AAAAAACCUGAAGAUGAUCCUGAGUCGC

14

2 transposon

492 CGCGUGGGUUCGGAUCCCAUCCUCGU

14

1 ncRNA

493 ACCUGAUUGAUAGCGUAGACGACGACC

14

0 transposon

494 UGGGAACACCGCGUGUUGUUGGCC

140 ncRNA

495 AAACUUGAAAAUCCAGGUGAUCCGGC

14

0 transposon

rRNA
LINE

R1-element
rRNA
rRNA
Rt1c
297
rRNA
rRNA

LTR

0 ncRNA

mdg3
rRNA

rRNA
LTR

opus

Low̲complexity

F-element
tRNA

rRNA

rRNA
HETRP̲DM

rRNA

LTR

invader1rRNA

Su(Ste)LINE

Helena
tRNA

LINE

Rt1a
5SrRNA

LTR

GATE

496 AAAUCUCGCGCCGGGCCGUACCCAU

14 no match

497 AGAGUCGUUGAAAAGUAGGCGGGCACCG

14 no match

498 UCCGCACCCUGGGCUCGAUCUUGA

14499 GCUGAGAAGACGGUCGAACUUGACUAUC

14 no match

500 GGUGACGUGUCCGAGCGGCCGAG

14 no match

501 GGCAACUGUGAGGGGAUCCUCAA

14 no match

502 ACAACAAACAACACAUACCCGCUGGC
503 GUAACUUCGGGAUAAGGAUUGGCUC

0 transposon

LTR

GATE

14

0 transposon

LTR

GATE

14

0 ncRNA504 GCUUUAAUCACGAGCAAUGCGGUG

14

0 no annotation

505 AGCCGUACCUGUUGGUUUGUCCCAUU

140 ncRNA

506 UGUGCUAGAAGACGAUUUUCGGACCGA

14

0 transposon

507 GGAUCCUCAACUGUGAGGGGGAUCCUCAA

14 no match

508 GCUGCGGGAUGAACCGAACGCCGGGUU

14 no match

509 UCCCAGCUCGGGGAGGUAGUGACGAA

14

0 ncRNArRNA

510 GUAACUUCGGGAUAAGGAUUGGCU

140 ncRNArRNA

511 UGCCGAGAGCUGAUGACGAGCUUU

14 no match

512 AAGACAAUUAUCCGAUACCGCUUA

14

0 transposon

LTR

flea

513 AUCCCCAGGACUUGAUCGCAUCGA

14

0 transposon

LINE

G2

514 AAAACCUGAAGAUGAUCCUGAGUCGUC

14

1 transposon

LINE

Helena515 GAUCUCGGAAGCUAAGCAGGGUC

14 no match

516 AUGACGGAAGGGCACCACCAGGAGUGG

14517 AGGCGCGGGUAACCCGUUGAACCCCAUU

13 no match

518 UGAGACUACGAACGGAUUGCGGACC

13

1 no annotation

519 UUCACACUCAAGAUGAUCGUGGCCA

13

0 transposon

LTR

520 UGCGCGAAGAAGGAGGACGAGAAGGCA

13

0 transposon

LINE

G2

521 ACGGAAUGGAAUCGAGCGCUGAGUAG

13

0 transposon

LINE

X

522 CCUGCAUGAAGAUGAUUCCGAAGA

13

0 transposon

LINE

Circe

523 CCGAUAACGAACGAGACUCAAAU

13

0 ncRNA

524 AAUAGGGACGGUCGGGGGCAUCAGU

13 no match

525 CGCAAACCCAAAAAGACAAUACACGACA

13

0 repeat

526 GAAACCAUCAGACGCCUCCAGAGGA

13

0 transposon

LINE

G

527 GAGCGCACGUGUUAGGACCCGAAAG

13 no match

528 AAAAACCUGAAGAUGAUCCUGAGUCGCA

13

1 transposon

LINE

Helena529 ACGAGCGCACGUGUUAGGACCCGAAAG

13 no match

530 GCCCAGAUGGCGGAAUUGGUAGAC

13 no match

531 AAGAGGUAAACGGGUGGGGUCCGCGC

13 no match

532 GCUGCGGUGUCCGAGUGGUUAAGG

13

0 ncRNA

533 UGUUUCAUCGUUAGACGGCUCGGGCA

13

1 AT-chX

534 CAAACCGAUAUGCUAUCUUGGCU

130 transposon

LINE

Doc

535 UCAAGCGAUAUUCGAGGCCCAACAA

13

0 transposon

LINE

Doc4

536 GAAGCCGGUGAUCGAUAGUUCCU

13

0 repeat

537 CAAAAUGACAAUGCACGACAGAGAGU

13

1 no annotation

538 UCAGAUAAAAACGUGUUAGUAAA

13

0 no annotation

539 CUGUUAAGAAACCACUCGAGCCGC

13

0 transposon

540 CCACUUUCAUGCUUGGGAUUGUG

130 ncRNA

541 GAGGCAAUCACCGAGAGCAUCAACGGCC

13

0 transposon

542 UCAGAUAAAAACGUGUUAGUAAAUA

13

0 no annotation

543 GCCAGGCCCGUAUAACGUUAAUGAUU

13

0 ncRNA

544 UGGCAACAUGUCGAGCUCCCAGAAC

13 no match

545 CGAGAGUGAGAAUACCUUGGCGGACUA

13

0 coding gene

546 AUGCCCGAUGUCCGCGAGAUUGCCGUU

13

2 transposon

547 AUUCAAGGUUACCCCAGGAUGCUGU

13

1 repeattrf

548 GGUCCUGAGAGAUGGGCGAGCGCCGU

13 no match

549 UCUCAUCGUCGUAGAACAAGCCCGUA

13

1 Su(Ste)

Su(Ste)550 UUCAAGGUUACCCCAGGAUGCUG

130 repeattrf

551 UGUUCCCCGGAUAGUUUAGUUACG

13

0 ncRNA

552 UCAAGAGACGCUUGAUAGCCUAGA

13

0 transposon

553 GUGGCAUUGAGAGGCGCCGUAGUU

13

1 no annotation

554 UGGGCCCGAACCCUUCUGGUGUGUUGG

13555 UGCCGAACGUAGUCUCUCGAGAU

13

556 GCCCGGGUAGCUCAGUCGGUAGAGCAUUG

130 ncRNAtRNA

557 GCACACAGAGGAGAGCAGAUGAGAGCUA

13 no match

558 UGCACCGAAAAUAUAUGCGAGGAGA

13

0 repeattrf

559 UUAACGAUCACAAAGGCAUCACGCGC

13

0 no annotation

560 AAACCUGAAGAUGAUCCUGAGUCGCA

13

0 transposon

561 GCUGAACCACUUUCAUGCUUGGGAU

130 ncRNArRNA

562 CGGUCCCGCUCAGAUGCCGCAGCCCGA

13

1 coding geneCG9536-RA¦CG9536

563 GCUUUAAUCACGAGCAAUGCGGUGAACG

13

0 no annotation

564 GGAUCCUCAA

13

0 transposon

565 UCCGAUAACGAACGAGACUCAAA

13

0 ncRNArRNA

566 UCGUCGUCGUCCAGUUCGUCCAGC

13

0 coding gene

CG3732-RA¦CG3732

567 UCUCAUCGUCGUAGAACAAGCCUGA

13

1 Su(Ste)

Su(Ste)568 CCGGGAUGGACAUACCUCUGGUGUACCA

13 no match

569 UCGCCGAAUCCCGGGGCCGAGGGAGCGAG

13 no match

570 CAACCAGAGAUCUAGAGGGCCCAU

13571 GAAUCCCGGGGCCGAGGGAGCGAGACCCGU

13 no match

572 GAACCACUUUCAUGCUUGGGAUUGU

120 ncRNArRNA

573 GUGAAACUGCUUAGAGGUUAAGCCCGAU

12

0 ncRNArRNA

574 CAAGGUGCAGGUGGACUACAAGGG

12 no match

575 AUCUCAACUGUGAGGGGAUCCUCAA

12 no match

576 GCUCGUUCUGGGUAAAUAGAGUUUCUA

120 ncRNA

577 ACCUGUUACAUUUGCUGAAGCGAC

12

0 transposon

578 UAAUUCCGAUAACGAACGAGACUCA

120 ncRNA

rRNA
rRNA
LINE

1 ncRNA

Cr1a

rRNA

297

rRNA
trf

tRNA
AT-chX-B

trf

LINE

Doc4
rRNA

LINE

F
rRNA
CG1490-RB¦Usp7

LTR

opus

rRNA
LINE

Rt1b

0 transposon

LINEbaggins

1 transposon

LTR

invader1

LINE

LTR

Helenagypsy3

1 no annotation

rRNA
LTR

Dm88
rRNA

579 AUGACAGGCACCCGAAAAAGCAAGAG

12

0 transposon

580 AUGGUUGCAACGGGUAACGGGGAAUCA

12

0 ncRNA

581 CACCCUUAACGCGCCCGAUCUCGU

12 no match

582 GCACACAGAGGAGAGCAGAUGAGGCA

12 no match

583 GAUGUCGUAUCACCCAGGACGUUCGACC

12584 ACCCUGAGCGCGCCCGAUCUCGU

12 no match

585 GUGAGGUCUCCGGACGUGAUCACUGU

120 ncRNA

586 UGGGUGGUGGUGCAUGGCCGUUCU

120 ncRNA

587 CUCCCACGGAACACCAGAGCAAUCCC

12

0 transposon

588 UGGGCUCCGGGGGAAGUAUGGUCGCA

12

1 ncRNA

589 ACCACUUUCAUGCUUGGGAUUGU

120 ncRNA

590 GCCGAACGUAGUCUCUCGAGAGCG

120 transposon

LTR

invader1

591 CACAGAGUACGGGGCUUACUGAAGU

12

0 transposon

LINEbaggins

592 CACAGAGUACGGGGCUUACUGAAGUCAA

12

1 transposon

LINEbaggins

593 UCCGAAGAUAACGAGGAGCAGAGCUGA

12

0 transposon

LTR

594 ACGAGUAAUAUGAGCGCCCAGAGUA

12

1 transposon

LTR

opus

595 AGGAGUCUAACACGUGCGCGAGU

12 no match

596 CAAACCAAUCCCAACCAAACCCGUCAAAC

12

0 transposon

LINE

G2

597 CUCGGGUCAAUCUGUAACUGGUCAAU

12 no match

598 UGUCUCAUCGUUAGACGGCUCGGGC

12599 GAUCAACUGUGAGGGGAUCCUCAA

12 no match

600 AUGCUCUCGAAUGUAUGCCCGAUA

12601 CGGGAUGGAGCAGCCCGGUAGCUCGGC

12 no match

602 AUAUCCGUGAACUACAUCCCAACGACC

12

0 no annotation

603 UCUCAUCGUCGUAGAACAAGCCCGAGGA

12

0 Su(Ste)604 CCGAAGAUUAUUUGGGAUCCGCUGA

12

0 transposon

LINE

Cr1a

605 CGCUGAAUAAACAUACGCCCGGUCGC

120 transposon

LTR

GATE

606 GGAUCUUCAACUGUGAGGGGAUCCUCAA

12 no match

607 GCAUCGGUGGUUCAGUGGUAGAAUGCU

120 ncRNA

608 GACAACAAUACGUUAAUGACCUCAA

12

0 transposon

DNA

Ivk

609 AGAACGAUGACGAUCCCACGGCUGGAGC

11

0 transposon

LTR

ninja-Dsim-like

610 CCAGAUGGAUGGUUGGCAGGGAUAACA

11

0 transposon

LINE

G2

611 GCAUUCAAUACAGCGAGAUGGCCUAA

11

0 transposon

LINE

Quasimodo

612 ACUCGCUGAAUCCCGGGGCCGAGGGAG

11 no match

613 ACAUUCAUAACCGAGCGACUUUCAA

11 no match

614 UGACCACCCAUACAAAUCCCCUCGC

11

0 transposon

LINE

Doc

615 AGCAAACCAAUCCCAACCAAACCCGU

11

0 transposon

LINE

G2

616 CGCUAGCUCAUUUCCCGGGAUGUUG

110 transposon

LINE

Fw2

617 CGCCGAAUCCCGGGGCCGAGGGAGCGAG

11 no match

618 UAGAAAACAACCAGGACUAUAUUCGGA

11619 AAACGAGAACUUUGAAGGCCGAAGU

11 no match

620 CUCCCCCGCCCCACCCCGCGCGCGCCGC

11 no match

621 UUUCCUGAAAUCCGAGUUAAUAUGGC

11

0 no annotation

622 UACAAUACAACGCUGACGACUAAA

11

0 no annotation

623 UUCUUGAGAAUUUGGACGCCGUUUA

11

0 transposon

LINE

Cr1a

624 CACUGCUGUCACCGCUGCCGCCCGU

11

0 transposon

LINER1-element

625 ACGGAAUGGAAUCGAGCGCUGAGUA

11

0 transposon

LINE

X

626 GUAGUACGAGAGGAACCGCAGGUACG

11

0 ncRNArRNA

627 UGCCGGAGCGAGGAGGAGGACUAG

110 Su(Ste)

Su(Ste)628 AAACCUUCGUAGACGACCUGCUU

11 no match

629 GGUUAAUUCCGAUAACGAACGAGACU

11

0 ncRNArRNA

630 AGAGGGACGGCCGGGGGCAUUCGU

11 no match

631 AACUACUGGACCAGAUGAUAGAGG

11

0 transposon

632 CAGAUCAACAAAGUACGAUGGGGAAC

11

0 no annotation

633 UGGCUCUCUCAGUCGCUUCCCGGGAA

110 ncRNA634 GGCCGUCGAGAUGAAGCAGGUGGCCCA

11

0 coding gene

635 ACCUUCAUCCAAGCGAACUGUGCCCGA

11

0 transposon

LINER1-element

636 GAAAAUCCGGGGGAGAGGGUGU

11 no match

637 GACACCGGAACAUGUGGCUGCGAG

11

0 transposon

LTR

diver2

638 GAAGCUUAUCCUUUGCUUGAUGAUUCGA

11

0 ncRNA

639 ACCAACGGGAUACCUCACACUCGAG

11

1 transposon

LTR

micropia

640 GGACAAAACAACAUCCCGGGAAAUGAGC

11

0 transposon

LINEbaggins

641 ACCAGAGAUCUAGAGGGCCCAAGUUG

11 no match

642 CUAAACCAUUCGUAGACGACCUGCUU

11 no match

643 UGUUUCAUCGUUAGACGGCUCGGCC

11

1 AT-chX

644 CACCAAGCGUUGGAUUGUUCACC

11

0 ncRNA

645 CAAGAUAUGACCAAAACCCAGACAC

11

0 transposon

DNA

646 CACAGAGUACGGGGCUUACUAAAGUCAA

11

0 transposon

LINE

647 GGAGCCGGGCGUGGGAUGCGAGUG

11 no match

648 UGAUGCCGUCGAUGUCUUAUGCCAAUG

11

0 coding gene

649 GCUUUAAUCACGAGCAAUGCGGUGAAC

11

0 no annotation

650 UCGCCGAAUCCCGGGGCCGAGGGAG

11 no match

651 CAACGGGAUACCUCAUACUCGAGUAA

11652 ACGGCCUGGGCUACACACGUGCUAC

11 no match

653 UGCGGGAUGAACCGAACGCCGGGUU

11 no match

654 AGCUGAGAUGUGAUGACGAGUGA

11 no match

655 CAAGCUAGACUAUGUAUCCCCGG
656 UUGGGGGCAUUAGUAUUACGACGCGA

0 transposon

LINE

rRNA

LINE

Rt1b
rRNA
rRNA

LINE

G
rRNA
rRNA

1 AT-chX
0 transposonaccord2297

AT-chX-B
LINE

R1-element

Su(Ste)tRNA

0 Su(Ste)

Su(Ste)Unknown

RR50960
rRNA
CG10691-RA¦l(2)37Cc

rRNA

AT-chX-B
rRNA
1360
baggins
CG12362-RA¦CG12362

0 transposon

LTR

micropia

11

0 transposon

LINE

Doc

11

0 ncRNA

657 AUGUCUAUGAGAUGACCGUAAUGAGC

11

0 transposon

658 AGGCCACCAUCGAAAGGGAAUCCGGUU

11 no match

659 GCUCCGGGGGAAGUAUGGUUGCAA

110 ncRNArRNA

660 ACCUUGGGAAUGGCUUCACAGUUC

110 ncRNA

alphagamma-element

661 AGCGAAUGAUUAGAGGCCUUAGGGU

110 ncRNA

rRNA

rRNA
LTR

ninja-Dsim-like662 CAAAUUAUAAGGAUGAUGAUACCGAC

11

0 no annotation

663 ACCUCGAACAAUAAAGCAUACGCCGGU

11

0 transposon

664 UGUUUCAUCGUUAGACGGCUCGGC

11

1 AT-chX

AT-chX-B

665 AAGGAGUCUAACACGUGCGCGA

11 no match

666 GCGGGAUGAACCGAACGCCGGGUU

11 no match

667 AACUUCGGGAUAAGGAUUGGCUCUGA

11

0 ncRNArRNA

668 AGCCAGUUACCGAAGCUGCGGAU

11 no match

669 UCCGGAGAGGGAGCCUGAGAAAC

11

0 ncRNA

670 AGAUCAAGAAUCCCGUGCCAAGACUGC

11

0 transposon

671 GUCCUGGGCUGCACGCGCGCUACAAU

110 ncRNA

672 UACCAUGAGAUUACACUGGAGGA

11

1 transposon

LINE

Cr1a

673 AGGACGAAAAGACCCCGGGACCUUC

11 no match

674 GCCUGAUGACCAUAGCGAGUUGGUACC

11 no match

675 CCCGAAAGCAGAUGAGGUAACGUACC

11

0 transposon

LINE

F

676 AACCCUGAACGCGCCCGAUCUCGUC

11 no match

677 GCGGCCCGCGUCUGAUUAGCUAGUUGGU

11 no match

678 UUAGAAGACAUAUCAUACCCAGGAAG

11

0 transposon

LTR

Idefix679 AACUUCGGGAUAAGGAUUGGCU

110 ncRNA

680 UCCGAUUGCAAGUAAUAGACGAACUGA

11

0 repeat

681 UCCAACUGAAGGAGUACGAAUGAUC

11

0 transposon

682 UCGAUUCCGGAGAGGGAGCCUGAGA

11

0 ncRNA

683 UUCAGAGAUUCUCGAGCUUCAGUCGC

10

0 transposon

684 AAUUCCGAUAACGAACGAGACUCA

100 ncRNA

685 GACCAUGAGAUUACACUGGAGGAU

10

0 transposon

LINE

Cr1a

686 CCCAGAUAAAUGAUGAAAUUUCGCGC

10

0 transposon

LINE

INE-1

687 GCCUGAUGACCAUAGCGAGUUGGU

10 no match

688 UGAGCGAACAAACCCAACAUAGUGAAA

10

2 transposon

LTR

McClintock

689 AACGAGUGUUAUUGUGGGCCGGU

100 ncRNArRNA

690 GGCUCUCUCAGUCGCUUCCCGGGA

100 ncRNArRNA

691 UGUUUCAUCGUUAGACGACUCGGGCGG

10

1 AT-chX

AT-chX-B

692 UCUCAUCGUCGUAGAAGAAGCCCGA

10

1 Su(Ste)

Su(Ste)693 GGUCCUGAGAGAUGGGCGAGCGCCG

10 no match

694 UCUGCGGGUUCAGCGCCACCUGG

10 no match

695 AUCCCACGGAACACCCGAGCAAUGC

10696 CUCGGCCGAUCGAAAGGGAGUCGGGUU

10 no match

697 ACUCGCCGAAUCCCGGGGCCGGGGGA

10 no match

698 CACACUAUCAGACAAUCCUGCGACUCGA

10699 CUGUAACUCGGGUCAACAACUCGGGUC

10 no match

700 UGCGCGAAGAAGGAGAACGAGAA
701 GAGAGAAUGAUAAGAACCAUUACGGA

LTR

GATE

rRNA
LINE

Circe
rRNA

rRNA
RSP
LINE

R1-element
rRNA

LTR

ninja-Dsim-likerRNA

0 transposon

LINE

G2

0 transposon

LTR

gtwin

10

0 transposon

LINE

G6

10

0 transposon

LINE

Cr1a

702 ACCGAAUUAAUCGCGAGGCUGCAC

10

1 transposon

LTR

mdg3

703 UGAUCCUCAACUGUGAGGGGAUCCUCAA

10 no match

704 UCUCAUCAUCGUAGAACAAGCCCGA

100 Su(Ste)

705 UGAGACUACAAACGGAUUGCGGACCGGA

10

0 no annotation

706 UUCCGGCACAAUGCGCAUGAAUGCGA

10

0 no annotation

707 AUGGUGACCACGGGUGACGGGGAA

10 no match

708 UACUUGUUCCCCGGAUAGUUUAGUUA

100 ncRNA

709 CCGAACUUGACAUCGCCCCUGGACGACC

10

0 repeat

710 GUAACAACGAAGAUGAUUCUGGCC

100 transposon

711 UGUGGGAUUAUGACUGAACGCCUC

102 ncRNA

712 AUUCACCAAGCGUUGGAUUGUUCACCCA

100 ncRNA

713 ACCGAAUUAAUCGCGAGGCUGCAAGAA

10

1 transposon

714 ACUCGCCGGAUCCCGGGGCCGAGGGAGC

10 no match

715 AGCGGGGAAAGAAGACCCUGUUGAG

10

1 repeat

716 UGCUCUCGAAUGUAUGCCCGAUG

10

1 transposon

LINER1-element

717 CUACAAUGGCGGUGACAGUGGGCA

10 no match

718 UGCUCGAUCAAAAGGCCCUGGCA

10

0 transposon

LTR

Dm88

719 AGGGACGUUAAUGAAGAUGCCGUGG

100 coding gene

720 CCCGGAAUGUUCUCAGGAAGAUGACUC

100 ncRNA

721 GCGGAGUUAAAAGCGUUUACGUUCGA

10

0 transposon

722 AGCGGGGAAAGAAGACCCUGUUGAGC

10

1 repeat

LSU-rRNA̲Dme

723 UCGCAUCGUCGUAGAACAAGCCCGA

100 Su(Ste)

Su(Ste)724 GUGCCAGGCCCGUAUAACGUUAAUGAUU

100 ncRNA

725 AACUGAAUAAACGAAAUGGAUGACACAC

10

0 transposon

726 UGGGGGCAUUAGUAUUACGACGCGAGA

100 ncRNA

727 CUCGCCGAAUCCCGGGGCCGAGGGAG

10 no match

728 GGUUCGAUUCCGGAGAGGGAGCCUGAG

100 ncRNA

729 CCUAAAACAAUUCAAGAUCUGGCCGG

10

1 transposon

730 UGUUUCAUCGUUAGACGGCUCGGAC

10

1 AT-chX

731 UGAUUAGACAUUCCCGUUUCUCGCGAC

10

0 transposon

732 GGAUCCUUAACUGUGAGGGGAUCCUCAA

10 no match

733 AAGCAGAACUGGCGAUGCGGGAUGA

10

2 ncRNA

734 ACACAACAACAUCCCGGGAAAUGAGC

10

0 transposon

LINE

Fw2

735 UGGAGCCACAGUAGAUUUACAUUU

10

0 transposon

LTR

gtwin

736 UUCGAUUCCGGAGAGGGAGCCUGAG

100 ncRNA

737 ACAAACGAUACCACACGAGAACGG

10

0 transposon

LINE

Rt1b

738 AACUACAACACAUCGAGCGACCGCG

10

0 transposon

LINE

Doc3

739 AUAAAUAAAAGGUGACCGGCAACGACGU

10

0 no annotation

740 AAAGUUGACCGAACUUGAUUAUUUA

100 ncRNA

741 CCCAGCUCGGGGAGGUAGUGACGAAA

100 ncRNA

742 UGGGCCCGAACCCUUCUGGUGUGUU

10

0 transposon

LINE

743 GACAAAGAGAAGCGGUGUGUGAUCGAG

10

0 transposon

LTR

744 CACAGAGUACGGGGCUUACUAAC

10

1 transposon

LINE

Su(Ste)

rRNA
trf
LTR

invader4
rRNA
rRNA

LTR

mdg3
LSU-rRNA̲Dme

pseudogene
snoRNA
LTR

micropiarRNA
LTR

invader4
rRNA
rRNA

LTR

blood
AT-chX-B

LTR

rover
rRNA

rRNA

rRNA
rRNA
baggins297
baggins

745 GGGACAUGUGGCGUACGAAAGACCCGC

10 no match

746 CUGGAGAAUAACCGAUGGACCAAUG

10747 CUCCCGGGGCUACGCCUGUCUGAGCGUCG

10 no match

748 GCUUCAUCCAAGCGAACUGUGCCCGA

10749 GCAAGUCGAACGGAGUUAUAUUGU

10 no match

750 UCCGAGGCCCUGUAAUUGGAAUGAGU

100 ncRNArRNA

751 AUGGUUGCAACGGGUAACGGGGAA

100 ncRNArRNA

752 CGAGAGAAGACUUUCACCCGAUGAGA

10

0 coding gene

CG12717-RA¦CG12717

753 GGUUAAUUCCGAUAACGAACGAGACUC

100 ncRNArRNA

754 AAGCCAGUUACCGAAGCUGCGGAU

10 no match

755 UGCUCCCGAAUGUAUGCCCGAUA

10756 AUGGCUCUCAGUCGCUUCCCGGGA

10 no match

757 AGAAUCCGGAUGGUAUUCGACCCUUUA

10

0 coding gene

758 CACACAACAAAACUAUAACCCAGCUGC

100 transposon

LINE

759 CAAUCUCAGAUAAAAACCCGAACGU

10

0 transposon

LTR

760 GCUCUCGAAUGUAUGCCCGAUAUA

10

0 transposon

LINER1-element

761 ACAAACAGAAUUCCCGAAUGAGA

10

0 transposon

LINE

Cr1a

762 UCAACCUGAGAGUUUGAUCCUGGCUC

10 no match

763 AGUGCCUCGAGGAAAUCCAGACGA

10

0 transposon

LINER1-element

764 UAUGGCUCUCUCAGUCGCUUCCCGG

100 ncRNA

765 CCAGACGUAAUACUCCACUACCCG

10

0 transposon

766 UGCGGGAUGAACCGAACGCCGGGU

10 no match

767 GGACAACUGUGAGGGGAUCCUCAA

10 no match

768 UGUUUCAUCGUUAGACGGCUCAGGC

10

1 AT-chX

AT-chX-B

769 UGCUUGGACUACAUAUGGUUGAGGGU

100 ncRNArRNA

770 AACUUCGGGAUAAGGAUUGGCUCUG

100 ncRNA

771 CAGAGAUGUGGCUAGCCUGAUAA

10

0 transposon

LTR

Stalker

772 UGGAACGAAAUUGGCCUGAUUAGCGG

90 transposon

LTR

GATE

773 CUGGACAGAAGGCUGACUUGGGG

90 transposon

LINE

G2

774 UGAGAUGUACAAUGCUGCCGAGUU

90 transposon

LINE

G2

775 CCAGACGUAAUACUCCACUACCCGGACU

90 transposon

LTR

HMS-Beagle

776 ACGCCAAGCACCCGAUUCUGAUACC

9

0 transposon

LTR

3S18

777 UAGUACAAUCUAUCAGACUGAGUUG

90 transposon

LINE

Fw2

778 CAAACCGAUAUGCUAUCUUGGCUG

90 transposon

LINE

Doc

779 ACCACCCUGAACGCGCCCGAUCU

9 no match

780 GACCAUAUCCGAAGACGCGGCGCUAGUA

9

1 transposon

LINE

Rt1b

781 GACACGUUCAACCAGAUGGGCCUGGAG

90 Su(Ste)782 UGGCAAUCAUGUUGGGUGAU

9

0 no annotation

783 CGCCACUCGAACCGGACACGCCCCU

9

1 coding gene

784 GAGUACUUCAACCAGACACUGGACGUGA

9

0 no annotation

785 CAGUUCAUCAAAGCGCCUUACUGG

90 transposon

LTR

flea

786 GACCAUAUCCGAAGACGCGGCGC

90 transposon

LINE

Rt1b

787 AGUGCGGUAACGCGACCGAUCCCGGA

9 no match

788 CGAGUAAUAUGAGCGCCCAGAGUGA

90 transposon

LTR

opus

789 UACUUGUUCCCCGGAUGGUUUAGUUAC

9

1 ncRNA

790 UACGACGAGAACGAGAUCAGCGC

90 transposon

LTR

frogger

791 CAAGAAACGACACGCUUACGUCAGA

9

0 transposon

LTR

flea

792 CUGGCAUUGAAACGAUGAUGAUCUCA

9

0 transposon

LINE

Doc2

793 CGAACCGAUUAAGAGUUAAAGUGCA

9

0 no annotation

794 AAAACCUGAAGAUGAUCCUGAGUCGCAU

9

1 transposon

LINE

Helena795 AGCUUCAUCCAAGCGAACUGUGCC

90 transposon

LINER1-element

796 AGGGUUCGAUUCCGGAGAGGGAGC

90 ncRNArRNA

797 AGAACUGGCGCUGCGGGAUGAAC

9

1 ncRNArRNA

798 CCCAGAAACACAGUGUUUGACGC

90 coding gene

799 CUAAAGUCCAUAUUGGAAAAGCUCGA

90 transposon

800 AAACGAGUGUUAUUGUGGGCCGGUA

90 ncRNArRNA

801 CACGGGAAAACUUACCAGGUCCGA

90 ncRNA

rRNA

802 GCCCGGCUAGCUCAGUCGGUAGAGCAU

90 ncRNA

803 CACAGAGUACGGGGCUUACUCAA

9

1 transposon

LINEbaggins

804 AAUAAUACAAACAGAGUUCCCGAAUGA

9

0 transposon

LINE

Cr1a

805 GAUGACUAUAUCAUUCUCGGGAUUAG

90 transposon

LTR

gypsy8806 AACCGUUGAAGACUACUGCCGCCUA

91 transposon

LINER1-element

807 CGUUAUAUUGGUUGAACUCUAGAUA

90 ncRNA

808 GUAACAACGAAGAUGAUUCUGGCCCA

90 transposon

809 GGCGGCGUCCGGUGAGCUCUCGCUGGCC

9 no match

810 CUACGAUGAUGACGAGUUCGCCGAUCA

90 coding gene

811 CAACCAGAGAUCUAGAGGGCCCAG

9

1 no annotation

812 UCUGUGAGCGGGAUUUGAGCCUGAGC

90 transposon

813 UGUUUCAUCGUUAGACGGCUCGGU

91 AT-chX

AT-chX-B

814 GAGGGACGGCCGGGGGCAUUCGU

9 no match

815 CCGAGGCCCUGUAAUUGGAAUGAGU

90 ncRNArRNA

816 AGCACUCGCCGAAUCCCGGGGCCGAGGGA

9 no match

817 GCAUUCGAGACCCAACGGCACGUCAAU

9

2 transposon

818 UACACAGGUAAACCAGGAAGGCC

90 no annotation

819 UAAGACUUAAAGAUGAUGAACCCAUU

9820 CGGCGGCGUCCGGUGAGCUCUCGCUGGCC

9 no match

821 UGUUAUCUAAGGCGACAUGGGUGCA

9822 GCACACAGAGGAGAGCAGAUGAGAGCAA

9 no match

823 CGGGAAAACUUACCAGGUCCGAAC

90 ncRNA

824 UGCUCCGAAAACAAGGCCCGUCGCUAA

90 transposon

825 GUGCUCGUUCUGGGUAAGUAGAGUUUCU

91 ncRNA

826 UCCCAGCUCGGGGAGGUAGUGACGA

90 ncRNA

827 GUGAUGUCAACGUUUGAUCCCCUGG

90 transposon

0 transposon

LTR

diver

0 transposon

LINER1-element

1 transposon

LINER1-element
CG32240-RA¦CG32240
F
297

rRNA
LTR

HMS-BeaglerRNA

Su(Ste)CG10845-RA¦CG10845

rRNA

CG18743-RA¦Hsp70Ab
LTR

Idefix

tRNA

rRNA
LTR

invader4
CG3121-RA¦CG3121

LINE

Doc4

LINE

Rt1b

0 transposon

DNA

NOF

0 transposon

LINE

Cr1a
rRNA

LINE

G6
rRNA
rRNA

LTR

ninja-Dsim-like828 AAGAGGGACGGCCGGGGGCAUUC

9 no match

829 AUGUAAGCGUAUUACCGGUGGAGUU

90 ncRNA

830 UGCUCUCGAAUGUAUGCCCGAUAUAA

9

1 transposon

831 CGGCAGGGUUCGUGACUGGGGUGA

9 no match

832 GGCACGGACUUGGGGAAUCCGACUGUCU

90 ncRNA

833 CACUCUAAAAAAGCUUCGGGACGAGA

90 transposon

834 ACCAGAGAUCUAGAGGGCCCAAUAA

9

1 no annotation

835 AGACAAUUGACGGUACCGCACACC

9

0 transposon

836 CCGAACUUGAGACCGCCCCUGGAC

90 Su(Ste)

837 ACCCUGAACGCGCCUGAUCUCGUC

9 no match

838 AAAAACCUGAAGAUGAUCCUGAGUCGU

91 transposon

839 AUUCCGGAGAGGGAGCCUGAGAAAC

90 ncRNA

840 CCCGUAAACCGCCAUCAGCAACAC

9

0 transposonLow̲complexity

F-element

841 ACACACAGAGGAGAGCAGAUGAGAGCA

9 no match

842 UAGACAGAAAAUAAGGGGACACGCCGA

9

0 transposon

LTR

opus

843 GUGAGGUCUCCGGACGUGAUCACUGUGAC

90 ncRNA

844 UGCUCGAUCAAAAGGCCCUGGCAA

90 transposon

845 AACUGGCACGGACUUGGGGAAUCC

90 ncRNArRNA

846 UGGCUCUCUCAGUCGCUUCCCGGG

90 ncRNArRNA

847 AUCCCUAGAAGAACAUUGAAGCGCU

90 Su(Ste)848 UUCAACUUUAACCCAAGAGACGUGACGA

9

0 transposonDNAtransib4

849 UUGACUAUUAUUUGGAGAACCACAG

9

0 transposon

LTR

opus

850 AGCCCGUGGACGGUGUGAGGCCGGUGGC

9 no match

851 GCAUUCGAGACCCAACGGCACGUGACU

9

1 transposon

LINE

INE-1

852 AACGAACGAGACCUUAACCUACU

9 no match

853 GGCUCCGGGGGAAGUAUGGUUGC

90 ncRNA854 GGAACACGAAACGAAAGCCCCCUG

90 transposon

LINE

Rt1a

855 UACAUCGAGAAUCUCACGCCCAU

9

1 transposon

LINE

Doc3

856 CGAGGAUAGUCCCUUCAUCAUGGGU

90 coding gene

857 ACCAAGAUCAUCAACCCGUGUUAUUC

90 transposon

858 AUACAUGCCGACGGGCGCUGACCCCCU

9 no match

859 CAACCAGAGAUCUAGAGGGCCCAAGG

9

1 no annotation

860 GCUCUCGAAUGUAUGCCCGAUAU

9861 CCGAAAGGCGUAGUCGAUGGGAACAGG

9 no match

862 UCCAGACGCAGCCCGGCCAGGAGGC
863 GCCGAACUUGAGACCGCCCCUGGAC

rRNA
LINE

R1-element
rRNA

LTR

invader3

LTR

Dm88
Su(Ste)LINE

Helena
rRNA

rRNA
LTR

Dm88

Su(Ste)rRNA

CG30393-RA¦CG30393
LINE

Cr1a

0 transposon

LINER1-element

9

0 transposon

LTR

ninja-Dsim-like

90 Su(Ste)864 CACAGAGUACGGGGCUUACUAGUC

92 transposon

865 ACGAGUGUUAUUGUGGGCCGGUACU

90 ncRNA

866 GCAAAGUGAACACGUCGCUAAGCGAAA

90 ncRNA

867 UCUGACGUGAUUCGGUUGACCUG

90 transposon

868 AAUGGCUCUCUCAGUCGCUUCCCGGGA

9

1 ncRNA

869 UGCUCUCGAAUGUAUGCCCCGAUA

9 no match

870 AACGAACGAGACUCUGGCAUGCUAA

9 no match

871 CCGGAUUACCCGAAGUCAUUCCAUC

90 transposon

872 GUAACCAAUGAAGUCCUCCUGAGGUGC

90 ncRNA

snRNA

873 CCGAACUUGAGACCGCCCCUGGACCA

91 Su(Ste)

Su(Ste)874 CGAGAUCAAACCGCCGAGCUGCAAC

90 repeat875 UGCUCUCGAAUGUAUGCCCGAUAA

8

1 transposon

876 UGGCCCAAACUGAUUUCCCUAAAUC

80 repeat

SAR̲DM877 ACUUGAGACCGCCCCUGGACGACCC

80 Su(Ste)

Su(Ste)878 UCAUACGGGUAGUACAACUUACAAUUGU

80 ncRNArRNA

879 UCAACUGUGAGGGGGAUCCUCAA

8 no match

880 CAAUCUCAGAUAAAAACCCGAACGUGGA

8

0 transposon

LTR

invader3

881 CCGUUCAAAAAUGUUCAUGCAGGAGA

8

0 transposon

LTR

Rt1c

882 AGUUUUAUCCGGUAAAGCGAAU

8 no match

883 UGCACAGGGAUGCGCGUCUGCCGAU

8

0 transposon

LTR

ninja-Dsim-like

884 AGCAAAGUUAAAGGCCCUGCUGA

8

0 transposon

LTR

gypsy3885 UGCAAUAGAAACGCGCGAUGAGUUGCCC

80 transposon

LTR

Dm88

886 CGAGAGAAGACGUUCACCCGAUGAG

8

1 coding gene

887 CUCAGCUGUGAGGGGAUCCUCAA

8 no match

888 UUUCUCAUCGUCGUAGAACAAGCCCGA

80 Su(Ste)889 UGACUCUAGACCGGAAGCUCACUUGGC

81 transposon

LINE

G

890 CCGGCUCGUAGCACGCAUCCUAGA

8

0 transposon

LINE

G2

891 CGUACUCAUAUGCGCACCCACACACUU

8

0 coding gene

892 CACAGAGUACGGGGCUUACUAAAGU

8

0 transposon

893 UGUGAACGAGUGAACUGGCAACAUU

81 Su(Ste)894 CGAAAACCGCAAUUACUUCUGCACCAGCC

8 no match

895 GCAUUCAAUACAGCGAGAUGGCCCAA

8

0 transposon

LTR

Quasimodo

896 CAUCCUAGAAUCGACCGACCAGC

8

0 transposon

LTR

flea

897 UUUGUAAGGACCUGAGAACUUGUAC

8

0 transposon

LINE

Doc4

898 UUACCAGGUCCGAACAUAAGUGUG

80 ncRNA

899 ACCAGAGAUCUAGAGGGCCCAAG

8

0 no annotation

900 UCGCAAAAGUUGACCGAACUUGAU

80 ncRNA

901 ACGAGUAAUAUCCGCCCGGAGUGA

8 no match

902 AUAUCCGUGAACUACAUCCCAACGAC

8

0 no annotation

903 GAAGUCAUUACUGAGAUCAUACGAGA

8

0 transposon

904 AACGAGCUCCAGAUGAUGGGCCAGUUC

80 coding gene

905 GUAGUCAUUACCGUGGGAUAUCA

8

0 transposon

906 GAAGCCGGUGAUCGAUAGUUCCUCU

80 repeat

907 CGCUCACAGACUACCUAAAAGGCGC

80 transposon

908 CCCAGCGAUCUCCGUACCCGGUUU

8 no match

909 AUCGAUAUUAUCCCAGCACUACGAAGC

8910 AACUCGCCGAAUCCCGGGGCCGAGGGAGC

8 no match

0 no annotation

Su(Ste)LINEbagginsrRNAalphagamma-element

LINE

Doc
rRNA

LTR

springer(TTG)nLINE

R1-element

CG12717-RA¦CG12717
Su(Ste)CG8963-RA¦CG8963
LINE

baggins
Su(Ste)

rRNA
rRNA

LTR

diver2CG10795-RA¦CG10795

LINE

Circe
trf

LINE

Doc4

911 CUAGAAUGCAAACAGUCACGUUGCG

80 repeat912 UAACCGUCAUUCCAGCGCAAGUUGCCCC

8

1 transposon

LTR

HETRP̲DM
ninja-Dsim-like

913 UGCUCUCGAAUGCUUGCCCGAUAU

8

0 transposon

LINER1-element

914 GUGAGGGGAUCCUCAA

8

2 transposon

LINEbaggins

915 AAGAACAACAGUGCAGACGGCGCCCG

80 transposon

DNA

H

916 ACGGAAUGGAACCGAGCUCUGAGUAG

80 transposon

LINE

X

917 CCUGCAGAGAACGCACCCGCUUGA

8

0 transposon

LINE

G2

918 GGAUCAUCAACUGUGAGGGGAUCCUCAA

8 no match

919 AAGUGAUCGAUACGCCCCCUCAGU

8

1 transposon

DNA

S

920 AGGUGGGGAGUUUGGCUGGGGCGGCAC

8 no match

921 AGCUAAUUAACACAAUCCCGGGGC

80 ncRNA

922 CAGUUCAUCAAAGCGCCUUACUGGA

8

0 transposon

923 AAGGUGCCGGAAUACACGCUCAUC

8 no match

924 AGAUGUCCUGGGCUGCACGCGCGCUA

80 ncRNA

925 GAUGUCGUAUCACCCAGGACGUCCGA

8

0 transposon

926 AGCGUAUUACCGGUGGAGUUCUU

80 ncRNA

927 UGAAACUGAAGCACGAAUUGUCCA

8

0 transposon

LTR

Dm88

928 UGAGCGAACCCGGGGAACUGAAAC

8 no match

929 AGCAAACCAAUCCCAACCAAACCCG

80 transposon

LINE

G2

930 UAAGACUUAAAGAUGAUGAACCCA

8

0 transposon

DNA

NOF

931 GUGAUGUCAACGUUUGAUCCCCUGGG

80 transposon

LTR

ninja-Dsim-like

932 CCGAUAACGAACGAGACUCAAAUAU

80 ncRNA

933 AACAGCUUAUCACCCCGGAAUUGGU

8 no match

934 CGCUUUGAUAGAAACCUAUAGAGA

8

0 transposon

LTR

opus

935 CUGGCAUUUAUACAGUGCAUUGGA

8

0 transposon

LINEbaggins

936 CCGAAGAUGACCAAGUUGGCUACCGA

8

0 transposon

LTR

gypsy6937 AAUGUAGGUAAGGGAAGUCGGC

80 ncRNA

938 UAGAUGCUAAUCCCGAGGAUGACAU

8

0 transposon

LTR

opus

939 GCCUGAUGACCAUAGCGAGUUGGUA

8 no match

940 CCCGAUGAGAAGAAUGGCCCGUAAAGC

8

0 transposon

LINE

RR49783941 GAAGCAGACGGCGGCCCAGAAGCGUC

80 coding gene

942 AAGUCCCGCAACGAGCGCAACCCUCGCCA

8 no match

943 GAAACGAGAAACUUCAUCCCAGUCGGA

8

0 no annotation

944 AAGAACAACAACAACCAGAGCAU

8

1 transposon

945 UUCCGAUAACGAACGAGACUCAAA

80 ncRNA

946 GAGAUUCCCACUGUCCCUACCUACUAUC

8

2 ncRNA

947 UGGGCCCGAACCCUUCUGUGUUGU

8

1 transposon

948 ACGGAAGACCCGCUCCCCGGCGCCGCUC

8 no match

949 UCAGAUAAAAACGUGUUAGUAAAU

8950 ACAUACCAGAUGGAUUUCGCCCGUUU

8 no match

951 GGAUUCUCAACUGUGAGGGGAUCCUCAA

8 no match

952 UACGACGAGAACGAGAUCAGCGCGAA

8

1 transposon

953 GACGGUACACCUGGACGAUUAGAUCA

8

1 coding gene

954 GCCACAGAGGAGAGCAGAUGAGAGCA

8 no match

955 CGUAAAACAAUUCAAGAUCUGGCCGGC

80 transposon

956 UUCAGAAUACCCGGGCUUGAACUUC

80 repeattrf

957 GCUGCGGGAUGAACCGAACGCCGGGU

8 no match

958 CGCAAAAGUUGACCGAACUUGAUU

80 ncRNArRNA

959 ACUCGCCGAAUCCCGGGGGCCGAGGGAGC

8 no match

960 UACUCGAAGACACCACGGUGAAAG

8

0 transposon

LTR

ninja-Dsim-like

961 UGCACUAAUAUAAGCCCUGACGUCCGAA

8

0 transposon

LTR

G4

962 CAACAAAGCACCAGGACAUGACGU

80 transposon

LINE

X

963 GGUAACGCAGGUGUCCUAAGGCGAGCU

8 no match

964 GCAAGCUACAAGCGUUCCUGCAGCGAUC

80 transposon

Simple̲repeatI

965 GUGAGGUCUCCGGACGUGAUCACU

8

0 ncRNA

966 GCUCUCGAAUGUAUGCCCGAUAUAC

8

0 transposon

LINER1-element

967 GCAGCCCGGGCGUCCUCCAGCGAUGAA

8

0 transposon

LINER1-element

968 AGUCGGUCCUGAGAGAUGGGCGAG

8 no match

969 GAGGCAAUCACCGAGAGUACCGAGA

8

0 no annotation

970 CAAGAUAUGACCUAAGCAAAGACAC

8

1 transposon

LINE

Cr1a

971 CGAGAUCAAACCGCCGAGCUGCAA

80 repeat(TTG)n972 GCCGAACUUGAGACCGCCCCUGGACGA

80 Su(Ste)

Su(Ste)973 CCACACAGAGGAGAGCAGAUGAGAGCA

8 no match

974 AAGAGGAGAAGGUGGCUUUGAGA

8

0 no annotation

975 ACGUACUAAAACAAAAACCUCCGCGU

80 transposon

LINE

Rt1b

976 CAACAAGACAUCCGAUUAGUUCAUU

8

0 transposon

LINE

Circe

977 GACGCGAUGUGAUUUCUGCCCAGUGCU

82 ncRNA

978 UGUGCUAGAAGACGAUUUUCGGGUUU

8

1 no annotation

979 GGGAAUCCUCGAGCCCUGACCUCACC

8

1 coding gene

CG17119-RA¦CG17119

980 CUGGUUAAUUCCGAUAACGAACGAG

80 ncRNArRNA

981 AUUCACCAAGCGUUGGAUUGUUCACC

8

0 ncRNArRNA

982 GCCCGUGGACGGUGUGAGGCCGGUGGC

8 no match

983 GACGCGAUGUGAUUUCUGCCCAGUGCUC

82 ncRNArRNA

984 GUGGGUGGUGGUGCAUGGCCGUUCUU

8

1 ncRNArRNA

985 GGCUGGGUCGGUCGGGCUGGGGCGC

8 no match

986 AGAACUGGCGAUGCGGGAUGAACCGA

8 no match

987 CGGACAGAGACGGCGCAUUUUCCA

8

0 transposon

988 GGCAAUGAGUCGUCCUGGGCAUCG

8

0 coding gene

989 CUGUCUAUUCGCCAGGUCCCGAUAGAA

8

0 transposon

990 CCGGAGAAGACGUUGAAUGGAUCG

8

0 no annotation

991 UCUGAAACAAGAAGAGGACGACGA

8992 UGCUAAGGGAUCCAGUUGCGAUA

8993 UACGUAAACAACCCCAGGCUGACUCC

8

rRNA
LTR

flea
rRNA

LINE

INE-1
rRNA

rRNA

rRNA

CG12717-RA¦CG12717

Unknown

RR50960
rRNA
rRNA

LINE

baggins

LTR

frogger

0 no annotation

CG34069-RA¦mt:CoII
LTR

blood

rRNA

rRNA

LTR

McClintock
CG11379-RA¦CG11379

LINE

Cr1a

0 transposonLow̲complexity

F-element

0 transposon

DNA

0 transposon

LTR

1360
Max

994 AGAACGAUGACGAUCCCACGGCUGGA

8

0 transposon

LTR

ninja-Dsim-like

995 AGUUUCAUCCAAGCGAACUGUGCCCGA

8

1 transposon

LINER1-element

996 GGACCUUGCUGCGGACCCUGUGGAC

80 repeat

997 CAACUCGUUACAAUCGUGUCUACGACC

7

0 transposon

998 UCUGAGGGGGAUCCUCAA

7

2 coding gene

999 AAAACCCGAAGAUGAUCCUGAGUCGC

7

1 transposon

1000 ACGGGAAAACUUACCAGGUCCGAACA

7

0 ncRNA

rRNA

1001 GGUCCCGGGACAUGGCGUGGUGGGUAG

7 no match

1002 ACCUGAGAGGGUGACCGGCCACACUGG

7 no match

1003 UCUUCACCGUUGACUAGCCCCACACA

7

0 Su(Ste)

Su(Ste)1004 GCUCGUCCCUAACUCCCUUACUAUUCU

7 no match

1005 UCCGAAGAUAACGAGGAGCAGAG

7

0 transposon1006 UCGGGAUAAGGAUUGGCUCUGAA

7

0 ncRNA

1007 AACGAGCGCAACCCUUGUCCUUAGUUAC

7 no match

1008 UCGGUGGCGAAGUUGGCUCAGAG

7

0 transposon1009 CCCAGAAACACAGUGCUUGACGCCA

7

1 coding gene1010 CACCACAACAAAACGGCGUCGCGG

70 transposon

1011 GUCAAGUUCCGUGAGAUCGGCCUGGC

70 coding gene1012 CUAACACGUGCGCGAGUCGGGGGCU

7 no match

1013 GAGGUCUCCGGACGUGAUCACUGUGA

70 ncRNA

1014 ACUGACAAUGACAGGGCAAUUUA

7

0 transposon

LTR

1015 AAACAACACAAUCGAUCCCGAAAU

7

0 transposon

LTR

1016 GCUGGGUCGGUCGGGCUGGGGCG

7 no match

1017 AACUGUGAGGGAUCCUCAA

7 no match

1018 CCGAUAACGAACGAGACUCAAAUA

71019 CCCUGAACGCGCCCGAUCUCGU

7 no match

1020 CAUGCCGACGGGCGCUGACCCCCU

7 no match

1021 GUUCCUCGGGAUCAAGGGCAACGA
1022 ACCACUUUCAUGCUUGGGAUUG

trf
LTR

opus
CG3848-RC¦trr

LINE

Helena

LTR

297
rRNA

LTR

297
CG18743-RA¦Hsp70Ab

LTR

Dm88
CG12699-RA¦CG12699
rRNA
gypsy417.6

0 ncRNArRNA

70 coding gene

CG40635-RA¦CG40635

70 ncRNArRNA

1023 AGAGGUUCGAAGGCGAUCAGAUACC

7

0 ncRNArRNA

1024 GAUCCCCGAAUCCGGAGUGGCGGAGAUG

7 no match

1025 CGGCUCAUCUCAUCCUGGGGCUGUA

7 no match

1026 UUGUACACACCGCCCGUCGCUACUACC

70 ncRNArRNA

1027 UGUUUCAUCGUUAGACGGCUCGGGCGC

71 AT-chX

AT-chX-B

1028 AAACGAAACUUUGAAGGCCGAAGU

7 no match

1029 CCACAGAGUACGGGGCUUACUGAAGUUU

7

2 transposon

1030 UUCCAGUGUUACUCGAUACGACGACUC

7

0 no annotation

1031 GCAUCCUAGAAUCGACCGACCAG

7

0 transposon1032 AUUCCGGAGAGGGAGCCUGAGAA

7

0 ncRNA

rRNA

1033 AUCUUAUGGUAUUGGGUUUUGAUGC

70 repeat

LSU-rRNA̲Dme

1034 CGUUUCAUCGUUAGACGGCUCGGGC

7

1 AT-chX

1035 CAAUCUACAAAGAGCUGAAAAUCCG

7

0 transposonLow̲complexity

F-element

1036 AAAAACCUGAAGAUGAUCCUGAGU

7

1 transposon

LINE

Helena1037 GGCACGGACUUGGGGAAUCCGACUGUC

70 ncRNA

1038 GACAACCAGAGAUCUAGAGGGCCC

7

0 no annotation

1039 GUGGAGCCGGGCGUGGAAUGCGAGUGC

7 no match

1040 AGAGGUUCGAAGGCGAUCAGAUACCG

70 ncRNA

rRNA

1041 CAGGCCCAUCUGGUUGAACGUGUCCUG

7

0 Su(Ste)

Su(Ste)1042 AGUGGCAUGUCUCGAGGUUAACCCGUG

7 no match

1043 ACCAAGAUCAUCAAACCCGUGUUA

71044 CAACUGUGAGGGGGAUCCUCAA

7 no match

1045 AAAUCUGGAUACUAGGUAUCGACGCCG

7

0 no annotation

1046 GAGAGGCGCCGUAGUUACCACCCC

7

0 no annotation

1047 ACGGGAAAACUUACCAGGUCCGA

7

0 ncRNA

1048 CAGGGGGAUCUUUGAGUGAUGAAA

7

1 transposon1049 UCCGAUUUCAAGUACCAGACAAAC

7

0 repeat

RSP

1050 GCAUUGAUUACGUCCCUGCCCUUUGUA

70 ncRNArRNA

1051 GAUGGUGUGCAUCGAUCGCUGUGUGGC

70 coding gene

CG9878-RA¦Tim101052 GGAGAGAUACCCAAGUGGCCAACGGG

7 no match

1053 GAUUCCGGAGAGGGAGCCUGAG

70 ncRNA

1054 AUCCCACGGAACACCCGAGCAAUGCCAU

7

1 transposon

LINE

G2

1055 AAAGAGGGCGUGAAACCGUUAAGAGGU

7 no match

1056 GGAACACGAAACGAAAGCCCCCUGUC

70 transposon

LINE

Rt1a

1057 CCGGGGCUACGCCUGCCUGAGCGUCGCUU

7 no match

1058 ACCGAAUGCUAUAAGUUACAAAGAUG

7

0 transposon

LTR

1059 UGAGCAAUAACAGGUCUGUGAUGCCCUU

70 ncRNA

1060 AGGCGCGGGUAACCCGUUGAACCCCAUUC

7 no match

1061 AAACCUUCGUAGACGACCUGCU

7 no match

1062 CAAUCCGAUACAUUUCACGCCGACA

7

0 transposon

1063 AAAGCGAAUGAUUAGAGGCCUUAGG

70 ncRNArRNA

1064 AGAUUAAGCCAUGCAUGUCUAAGUACA

7

0 ncRNArRNA

1065 UGAGAUAGUCGGGCUUGAUUGGGAAA

70 ncRNArRNA

1066 GACGCGAUGUGAUUUCUGCCCAGUGC

72 ncRNArRNA

1067 GCCUGAGAAACGGCUACCACAUCUAAG

70 ncRNArRNA

1068 CACGAAACUGGAACGGGAUUAAGA

7

0 no annotation

1069 GACACGCAUGGAUCCACCACCUUCAGGA

7

1 coding gene1070 CGACUCGUUUUUAAAUUUCGCAACAAGC

7

0 transposon

LINE

Cr1a

1071 UGUUAUCUAAGGCGACAUGGGUGC

70 transposon

LINE

Cr1a

1072 ACUCGCCGAAUCCCGGGGGCCGAGGGAG

7 no match

1073 UGUCUCAUCGUUAGACGGCUCGGG

7

1 AT-chX

AT-chX-B

1074 CUGUUUCAUCGUUAGACGGCUCGGGC

7

0 AT-chX

AT-chX-B

1075 GUCGAGAGAUAUCGGAAGAGUUU

70 ncRNArRNA

1076 CACUUUCAUGCUUGGGAUUGUGA

70 ncRNArRNA

0 transposon

LINEbaggins

LTR

flea

AT-chX-B

rRNA

LINE

Cr1a

rRNA
LINE

baggins

rRNA

297
rRNA

LINE

INE-1

CG3982-RA¦CG3982

1077 AGGACGAUAACGACUAGAACCGCGUA

7 no match

1078 ACGAGCGCACGUGUUAGUACCCGAA

7 no match

1079 UUCGGCCCGAACCCUUCUGGUGUG

7

0 transposon1080 GAUUAACGAGAUUCCUACUGUCCCU

70 ncRNA

1081 AAGACAAUCUGGGAGGUGCCCGA

7 no match

1082 GCGGAAAGAGAGUAAUUUUGGCC

70 transposon1083 UGAGAUUACAAACGGAUUGCGGACC

7

1 no annotation

1084 UCACAUGAACUUGGAAUUCCCAGUAAGU

7

0 ncRNA

1085 GGCUCAUCUCAUCCUGGGGCUGU

7

2 no annotation

1086 GAUUCAAAGACGAGGUUGACGCCGC

70 transposon

1087 GGAGGAGCCGGAACUGGGAGCCCAGGA

7

0 coding gene1088 CUACGUCCGUUGGAUUAUGCCUGAA

7

0 ncRNA

1089 AACUGAAUAAACGAAAUGGAUGA

7

0 transposon

LTR

invader41090 GGUAGUAGAACACGUUUUAUUCUGGA

7

0 transposon

LTR

ninja-Dsim-like1091 GACGUAGAAAAACUUGGAGACGA

7

0 transposon

LTR

diver21092 ACGCCCGAUACAUAGUGUCGAAUCG

7

1 coding gene1093 UUCAAGGUUACCCCCAGGAUGCUGUGC

7 no match

1094 CCAUGGACUCAGAUCAGCUUAAGGC

7

0 transposon

1095 UCGCGAAAGUCGCUACCGAUGUACCCACG

7

0 coding gene1096 ACCGAUUAAUCGCGAGGCUGCAA

7 no match

1097 ACGACUAUGAGAGUGCAGCUGAGGC

70 transposon

1098 AGUGAGGUCUCCGGACGUGAUCACUGU

70 ncRNA

1099 CUCGCAAGAAAACUAAUCCGAGUAUG

7

0 transposon

1100 GCUAAACCAUUCGUAGACGACCUGCUU

7 no match

1101 CAAAGCUUUUGGGCUCCGGGGGAA

70 ncRNA

1102 AGGGACGUUGAUGAAGAUGCCGUGGU

70 coding gene1103 CCAGACGUGAUACUCCACUACCCAGA

7

0 transposon1104 CUGGUAAAGCGAAUGAUUAGAGGCC

70 ncRNA

rRNA

1105 UGUUCCAUCGUUAGACGGCUCGGGCGG

7

1 AT-chX

AT-chX-B

1106 AGAGGUGAAAUUCUUGGACCGGCGC

72 ncRNA

rRNA

1107 UGACGGAAGGGCACCACCAGGAGU

70 ncRNA

rRNA

1108 AAGGUGGAAAUAAAGAAAAGGAUCCUCAA

7 no match

1109 CGUAACUUCGGGAUAAGGAUUGGCUCU

70 ncRNA

rRNA

1110 ACCCUGAACGCGACCGAUCUCGUC

7 no match

1111 ACGCGACCUCAGAUCAGACGUGGC

7 no match

1112 GUAUACCUAUACAUUACCGCUAAA

70 ncRNA

rRNA

1113 ACGAGCUGGAUAACUUGUUGCCCCACA

7

0 coding gene

CG8251-RA¦Pgi

1114 CAACGAGUUCCUCUGCCACAUGCCC

71 Su(Ste)1115 CAAGAUAUGACCAAAGCAAAGACACUAG

7

0 transposon

LINE

Cr1a

1116 AACGCUUUCAACACCGCCAGAUGGCCCA

7

1 transposon

LINE

F

1117 AACCAAGCUAGAGUACAGAUCGAAA

7

0 transposonLINEjockey1118 ACCUGAGAAGAAACCGAUGGCGCCC

70 coding gene1119 ACAACCGAUAUAAUUCUAACUGAGCACC

7

0 transposon

LTR

G4

1120 ACAAAGUUAACGCGAGCCAAAUUUC

7

0 transposon

LTR

gypsy121121 CUUGGUUAGGUCGAUUCUUUUUGAAU

7 no match

1122 AAGAAGAUGAAGCGCAACAAGCCGA

7

0 transposon

LTR

ninja-Dsim-like1123 CAGCUGCCAUACUGCGAUCCACUGAA

7

0 ncRNA

1124 CUAGCAAAAAUAUUUGAUCCGUUAGG

7

0 transposon

1125 UCGGACAAUUAUUUUUUAUGUUGUGGC

70 repeat1126 UUCAGGGGGAUCUUUGAGUGAUGAA

7

0 transposon

1127 CGCGAGAGGUGAAAUUCUUGGACCGUCG

70 ncRNA

1128 GUGGCUUUGAGAGGCUCCGUAGUUA

7

1 no annotation

1129 AAACCUGAAGAUGAUCCUGAAGUCU

7 no match

1130 UAAGGCUGAGAACUGAUGACGAGUGUU

7 no match

1131 CACCUUGGGAAUGGCUUCACAGUUC

71132 ACUCUAGAUAACCUCGGGCCGAUCGC

7 no match

1133 CAGAUCGAGAACUGGUUUGCUGAGCGCU
1134 CCGCAAGCGUAUCAAUCUGCGUCCCGAC
1135 AGCAGGACGGAAAGACCCCGGGACCUUU

7 no match

1136 UGCUCUCGAAUGUAUGCCCGAUAAU

7

2 transposon

1137 GAGGUCUCCGGACGUGAUCACUGUGAC

7

0 ncRNA

1138 CACAGAGUACGGGGCUUACUAAAGUC

7

0 transposon

1139 CAACCUGAGAGUUUGAUCCUGGCUC

7 no match

1140 GACUGCAGAUCGAGAGGUCCCCGGUU

70 ncRNA

1141 UAUGAAGUAGCCCGUCUUCCGAA

7

1 transposon

LTR

gypsy41142 AGGAGUCUAACACGUGCGCGAG

7 no match

1143 AACCAUUCGUAGACGACCUGCU

7 no match

1144 AGAUCCCCGAAUCCGGAGUGGCGGAGA

7 no match

1145 UACGUAAACAACCACAGGCUGACUC

7

1 transposon

LTR

Max

1146 UGAGAUAGAUUCCCGGGAAUUCAAAAG7

0 no annotation

1147 AUACCGCCCUAGUUCGAACCAUAAA

7

1 ncRNA

1148 CCCAGAAACACAGUGUUUGACGCC

70 coding gene

1149 GCAUUCGAGACCCAACGGCACGUGAUU

7

2 transposon

LINE

INE-1

1150 ACCAACGGGAUACCUCACGCUCGAGUA

7

2 transposon

LTR

micropia1151 AGGUAGUGACGACAAUUGCAUCGGUU

70 coding gene

CG1059-RA¦Karybeta3

1152 GAAUAUUCUGUGCAUGGGAUAAUGA

7

0 ncRNA

rRNA

1153 UGUUUCAUCUUUAGACGGCUCGGGC

7

1 AT-chX

AT-chX-B

1154 CUUAUCCUUUGCUUGAUGAUUCGA

7

0 ncRNA

1155 CUCCCACGGAACACCAGAGCAAUCCCACC

7

0 transposon

1156 ACUUCGGGAUAAGGAUUGGCUCUGA

7

0 ncRNA

1157 ACCUGAUUGAUAGCGUAGACGACGAC

7

0 transposon

LINE

Rt1a

1158 GAUGACUAUAUCAUUCUCGGGAUUA

7

0 transposon

LTR

gypsy81159 GAUCCUCAACUGUGAGGGGAUCUCAA

7 no matchLINEbaggins
rRNA

LINE

Cr1a
rRNA

LTR

gtwin
CG11319-RA¦CG11319
rRNA

CG40635-RA¦CG40635
LTR

gypsy6
CG8982-RA¦Acp26Aa

LTR

297
rRNA

LINE

Doc
rRNA
CG12717-RA¦CG12717

LTR

HMS-Beagle2265

Su(Ste)CG8787-RA¦Asx

rRNA
DNA

HB
SAR̲DMLINE

bagginsrRNA

0 ncRNA

alphagamma-element7

0 coding gene

CG17210-RA¦scpr-B

7

0 coding gene

CG12334-RA¦Atg8b
LINE

R1-element
rRNA

LINE

bagginstRNA

rRNA
CG18743-RA¦Hsp70Ab

rRNA
LINE

G
rRNA

1160 CACCCUGAACGCGCCCGAUCUCG

7 no match

1161 ACCGAAUUAAUCGCGAGGCUGCAAGU

7

1 transposon

LTR

mdg3

1162 AGAACACGCAAGAGCAGCUCCAGC

7

0 transposon

LINE

G6

1163 GCGGGAGCCCCGGGGAGAGUUCUCUU

7 no match

1164 AGAUCAGUGAAAUCAUCUUCCGGGA

7

0 transposon

LTR

micropia1165 CGAGUGUUAUUGUGGGCCGGUACU

7

0 ncRNArRNA

1166 CAGGCAAGGUGUUGUAAGUGGUUGAGC

70 ncRNArRNA

1167 GGAGAGGUGGCAGAGUGGUCGAAUG

7 no match

1168 UGAGACUACAAACGGAUUGCGACC

71169 CGCCCCCCGGCCCCGCGUCCUCCCUC

7 no match

1170 UAACGAGUUCCUCUGCCGCGUGCC

7

1 coding gene

CG40719-RA¦CG40719

1171 GACUGCAGAUCGAGAGGUCCCCGGUUC

70 ncRNAtRNA

1172 AAGAACGAAAGUCGGAGGUUCGAAGA

7 no match

1173 ACUUCGGGAUAAGGAUUGGCUCUGAA

60 ncRNA

1174 CAACAAAGCACCUGGACAUGACGUC

60 transposon

1175 AUUCGUGAUGGGGAUCGGGGAUUGC

6 no match

1176 CUGUGAGGGGACCUCAA

6

2 coding gene

CG2083-RB¦CG2083

1177 GCCCUAGUUCUAACCAUAAACGAUGCC

60 ncRNArRNA

1178 AUACAUGCCGACGGGCGCUGACCCC

6 no match

1179 GGAUCCUCAACUGUGAGGGAUCCUCAA

6 no match

1180 CAUGGCUCUCUCAGUCGCUUCCCGGGA

6

1 ncRNA

1181 CCCGAAGGCAGAUGAGGUAGCGUAC

6

1 transposon

1182 CAAACGUAAUGUUACGGUGCCCAA

60 ncRNA

1183 UUCCUCGGGAUCAAGGGCAACCAGU

6

0 repeat1184 UAACGAGAGAAGCAUUUUUGCCGC

60 transposon

1185 GCCCUGAAGACCAUUACUCGUCAUU

6

0 coding gene1186 UUCCAGCGAAUACCGAGUGUUUUGGC

61 transposon

LTR

GATE

1187 GCUGCUAGAGAGAACUGAUAAAGUU

6

0 transposon

LTR

flea

1188 UGCUAGAAGACGAUUUUCGGGCCGA

6

0 transposon

LINE

Cr1a

1189 CAACCAAAGAGGUAUUGCACUAGCGA

6

0 transposon

LINE

X

1190 CGCGCGCCAAGGAGCACCCCGUCUUUCUG

60 coding gene

1191 CGCUUCAUCCAAGCGAACUGUGCCCGA

6

1 transposon

LINER1-element

1192 AAAACCUAGAAGAUGAUCCUGAGUCG

6 no match

1193 UAUGCUAAAAGUUAUCCUUACCCAGUC

60 transposon

LTR

opus

1194 AUAGGACCCUGAAAGCACCGCAUC

6 no match

1195 UCUGAUGUUACGCCCGAAGAGAUA

60 transposonLow̲complexity

F-element

1196 AACUGAAUAAACGAAAUGGAUGACUA

62 transposon

LTR

invader4

1197 CCUGAAGGAAUGAAGUUUUCACCGAC

6 no match

1198 CUCGACGGUAACCGAUGGUUAGGC

60 transposon

LTR

Quasimodo

1199 UGCCGGGGCGAGGAGGAGGACUAGCUG

60 Su(Ste)

1200 GAUUCCGCAGUGCGUUGAUAUGGCCAG

6

0 Su(Ste)

1201 UGCACAGGGAUGCGCGUCUGCCGA

6

0 transposon

LTR

ninja-Dsim-like1202 GAGAGAUGGGCGAGCGCCGUUCCGAA

6 no match

1203 CCAGCCUACAUGGAGACAUCACCG

6

0 transposon

LINE

G2

1204 UUUGCAAAAACGAGAGCGAUAGAG

6

0 transposon

LTR

micropia1205 GACGAAAUAAACAAGCACUCGAGCAGA

60 transposon

Simple̲repeat

I1206 CGACUCGUUUUUAAAUUUCGCAAC

6

0 transposon

LINE

Cr1a

1207 GAUCUCAACUGUGAGGGGAUCCUCAA

6 no match

1208 UGCUCUCGAAUGCUUGCCCGAUAA

6

1 transposon

LINER1-element1209 CAACAAAUCAUGAAAGAGCGCGAGU

6

0 no annotation

1210 AGAUCAGACGUGGCGACCCGCUGAAU

6 no match

1211 AGAUGUCCUGGGCUGCACGCGCGCUAC

60 ncRNA

1212 UAGCUGAUCCAGAUCGAGGUUCUCCGGG

60 transposon

LTR

flea

1213 UGACAGUCCAAACCCCGUAACUUGAU

6

1 transposon

LTR

GATE

1214 UGCGCAGAGUCAUGCCAGUACUGGA

6

0 transposon

LINE

G2

1215 GUGGGUGGUGGUGCAUGGCCGUU

6

1 ncRNA

1216 UGGCCACACUGUCUCCUCCUGAGA

6 no match

1217 CAGUCUAUGAAAGGUGUGUUGCCCAGC

6

0 transposon

LTR

GATE

1218 UUGGUUCGAAAGCUAUCGUGCUGA

6

0 transposon

LTR

DM88

1219 AUCCAACUGUGAGGGGAUCCUCAA

6 no match

1220 GCACACUGAGGAGAGCAGAUGAGAGCA

6 no match

1221 GCCGUGAUCGUCUAGUGGUUAGGACCCC

60 ncRNA

1222 GCCGAGAUAUGCUGCGAGCUGCCAA

6

1 transposon

Simple̲repeat

I1223 AGGCCAUUAUACACUAUAGUUAGUGA

6

0 transposon

LTR

roo

1224 AAACGAGUGUUAUUGUGGGCCGGUAC

60 ncRNArRNA

1225 AACCACCCUGAACGCGCCCGAUCUCGU

6 no match

1226 UUCAGCGAGAUACUGGACGUGAUCCU

6

0 repeattrf

1227 UUCCGGAGAGGGAGCCUGAGAAACG

60 ncRNArRNA

1228 UCCGGAGAGGGAGCCUGAGAAACGG

60 ncRNA

1229 UUGGGCCCGAACCCUUCUGGUGUG

60 transposon

LINEbaggins1230 CACACUGGAAAAAUCUCCGAUUGG

6

0 transposon

LTR

opus

1231 CAAUUCAUCAAGCGGUGGAUCCUGCGUUU

6 no match

1232 CUCGGAAGCUAAGCAGGGUCGGGC

6 no match

1233 CUGGGAAACGGGGCGCGGCCGGAA

6 no match

1234 CGGACAGAGACGGCGCAUUUUCC

6

0 transposon

LTR

McClintock

1235 AUUCCGAUGCAUGGACCCUCGAAGCA

6

0 coding gene1236 UCCCCGCGGAAAGACGGAAAGACCCCA

6 no match

1237 AUCCCCUGGACCUGUACUGACGCUCAU

6 no match

1238 AUAGGGACGGUCGGGGGCAUCAGU

6 no match

1239 AGGGACGUUAAUGAAGAUGCCGUGGU

60 coding gene

1240 AGGACGUUCACACGAGGGUUACUAUGA

6

0 transposon

LTR

opus

1241 CCACAGAGUACGGGGCUUACUGA

6

0 transposon

LINEbaggins

1242 AUGGAACACAUAGGGGCUUCGAGG

60 transposon

LTR

HMS-Beagle

2 no annotationrRNA
Simple̲repeat

I

rRNA
LINE

FW
rRNA
trf

LTR

gypsy12
pseudogene

CG10340-RA¦CG10340

Su(Ste)Su(Ste)

rRNA

rRNA

tRNA

rRNA

CG11181-RB¦cup

pseudogene

1243 GUUGUAUUACGAGAUUGAGGACUGGC

60 coding gene1244 UGUCCGCCCUUCGUGCCUCAAGAUAA

6

1 transposon

DNA

CG14579-RA¦CG14579

1245 UGCUCUCGAAUGUAUGCCCGAUGUA

6

1 transposon

LINER1-element

1246 GACGAGAUAAACCAGCACUCGAGC

60 transposon

LINE

Doc3

1247 UCUUGCAAUAAAGCUCGUCCUCGGGU

60 transposon

LINE

G6

1248 AUGGCUCUCUCAGUCGCUUCCCGGGAAA

60 ncRNA

1249 AAAGAAACGAAGACAAGAACAGCUCGA

6

0 transposon

LTR

invader6

1250 CUGACUAAGAGGGCUGCACAGUU

6

0 transposon

LTR

HMS-Beagle

1251 GGCUCUCUCAGUCGCUUCCCGGGAA

60 ncRNA

1252 ACCGAAAUGAAUUUGGCUAGCGCUA

60 transposon

LTR

GATE

1253 CCCACCUGAAUCUCCGCAACCCAGU

6

0 transposon

LINE

G2

1254 AAACCUGAAGAUGAUCCUGAGUCGU

60 transposon

LINE

Helena1255 CGGAACGAAACGGCCUUUUCUAAU

6 no match

1256 GCGAUGAACAGAAAAGAAUCAACCGA

6

0 transposon

Unknown

RR50960

1257 AGCGAACCGGGACCAGGCCAGUGCUCU

6 no match

1258 CCGAAAGAUGGUGAACUAUGCCUGGGCA

6 no match

1259 AUUCCGAACAUACACCGACAAACA

6

0 transposon

LINE

Doc

1260 AAAAACCUGAAGAUGGUCCUGAGU

6

2 transposon

LINE

Helena1261 ACAUUCAUAACCGAGCGACUGUUCAU

6

1 transposon

LTR

GATE

1262 UACCGGGGCUAAGCAUAUUACCGA

6 no match

1263 CGUACACAUAUUUCGCAACGUGACUG

61264 GAUGCAAACUCCGAAUACCAGCA

6 no match

1265 UGCUUGGACUACAUAUGGUUGAGGG
1266 GCCCGAAUCGGAUUUCCAUAACUUCCGC
1267 AAUAGGGAACGUGAGCUGGGUUU

6 no match

1268 UUCAACCGGACGGGCCUAGAGUUAUUC
1269 UCUCAUCGUCGUAGAACAAGCCCGC

1360

rRNA

rRNA

0 repeat

HETRP̲DM

6

0 ncRNArRNA

60 coding gene

CG31764-RA¦vir-1

60 coding gene

CG40635-RA¦CG40635

6

1 Su(Ste)

Su(Ste)1270 CGCUUGGGAACACCGCGUGUUGUUGGCCU

60 ncRNA

1271 ACUGCUGCUGAGAACUCGACUGA

6

0 transposon

LTR

flea

1272 GGAUAGUCCCGAAGAAACCUAAACC

6

0 transposon

LTR

opus

1273 CUAACCAUAAACGAUGCCAGCUAGC

60 ncRNA

1274 AUGACAGUUCACGAUUGAUUCCCCA

6

0 transposon

LTR

1275 GCACACAGGGGAGAGCAGAUGAGAGCA

6 no match

1276 CAAUAAACAACAAAAUCGAUCCCGAA

6

0 transposon

LTR

1277 UGCUCUCGAAUGUAUGCCCGGUAU

6

1 transposon

LINER1-element

1278 AUUGCUUGUACCUGAGUCGUUGCGU

60 transposon

LINE

Circe

1279 UCCGGGAACAUGCCACCUCCGUUGU

60 coding gene

CG1763-RA¦nod

1280 AUACCACCCUGAACGCGCCCGAUCUCGUC

6 no match

1281 AACUCUAAGCGGUGGAUCACUCG

60 ncRNA

rRNA

1282 ACGAAUGAUAAGUUGUAUGCCUCCGG

6

0 no annotation

1283 CGCAAUCCUGGGCCUCGACGCGAAU

6

0 transposon

1284 ACCAAAGCUUUUGGGCUCCGGGGGA

60 ncRNA

1285 UGCACUUGAAUCCAAGAGAAACGCA

60 transposon

LTR

Idefix

1286 CCCGUAUCAAUUCCACGUUUGGAGC

60 transposon

LTR

3S18

1287 GUAGAGCGUCCGACGAAUACCCUGGGG

6 no match

1288 UAUUACAUAGAUGUAGAUGGGUCGGAG

6

0 no annotation

1289 CAGACAGAGAGGCUCAUUUACAACCA

6

0 transposon

LTR

McClintock

1290 GACGUCCAGAGCGGUUUCAACGUGG

60 coding gene

CG18111-RA¦Obp99a

1291 ACUACCCUGAACGCGCCCGAUCUCGUC

6 no match

1292 GGUGUCCCAAGGCCAGCUCAGUGC

60 ncRNArRNA

1293 GCACACAGAGGAGAGCAGAUGAGACA

6 no match

1294 AUGUUUCAUCGUUAGACGGCUCGGGC

6

1 AT-chX

AT-chX-B

1295 CUGAAGUUGAGUGGUGAAUCCGUG

6

0 coding gene1296 UACGUAAACAACCCCAGGCUGACUC

60 transposon

LTR

Max

1297 UAACGACCAGACAUACGCCAUAAUC

6

0 transposon

LINE

R1

1298 GGCACGGACUUGGGGAAUCCGACUGU

60 ncRNA

1299 CACUGGAAAAAUCUCCGAUUGGU

60 transposon

1300 CGCAAACCCAAAAGGACAAUACACGA

6

1 repeat1301 CCGAAUUAAUCGCGAGGCUGCAAGA

6

0 transposon1302 UAGAUCUUCACCGUUGACUUGCCCC

60 Su(Ste)1303 CGACUCGUUUUUAAAUUUCGCAACA

6

0 transposon

1304 UAGAGAGUGAUGCCGAGUAUAAAAG

6

0 repeat1305 CACGGGAAAACUUACCAGGUCCGAACA

60 ncRNA

1306 CCAUCAUUCAAAGCCAGCUGGAUGCCC

60 transposon

1307 AGAGAAGACCCUCAGCCUACGAGA

60 coding gene1308 ACUUGCCGAAUCCCGGGGCCGAGGGAG

6 no match

1309 CGUUGUGGCCGAUGAAACCCUGGUUC

6 no match

1310 UGCUCUCGAAUGUAUGCCCCGAUAUAC

6 no match

1311 AGUGCGGUAACGCGACCGAUCCCGGAGA

6 no match

1312 CUGGAGGAGGCUAGCUGUAUCCCUCGGC

60 transposon1313 CGGUUCCUGACGAAAAUAUUUUUUU

6

0 no annotation

1314 AUCCGUUGAAGACUACUGCCGCA

6

1 transposon

1315 UGCAAUCGAAACGAGAAACUUCAUCCC

6

0 no annotation

1316 GAGCGCGGGAACGAGAUGUCCGAGGUU

6

1 coding gene

CG5075-RA¦CG5075

1317 GACUGCAGAUCGAGAGGUCCCCGG

60 ncRNAtRNA

1318 AUGCCUGAACGCCUCUAAGGUCG

60 ncRNArRNA

1319 AUUCCCCAUGAACGAGGAAUUCCCAGU

6 no match

1320 GUAGGGAGUUUGACUGGGGCGGUA

60 ncRNA

1321 GAAACCAUCAGACGCCUCCAGAGGAA

6

0 transposon

LINE

G

1322 AAAAUUACAAAGACGACGGCCCA

6

0 transposon

LTR

springer1323 UACAAUGAUCUGAUCGGGUUUUUC

6

0 transposon

LINE

Cr1a

1324 UGUGCUAGAAGACGAUUUUCGGACCG

60 transposon

LINE

Cr1a

1325 ACCCUGAACGCGCCCGAUCUCGUCUGA

6 no match

5SrRNA

rRNA

LINE

opus
17.6

R1-elementrRNA

CG41545-RA¦CG41545

rRNA
LTR

opus
trf

LTR

mdg3
Su(Ste)

LINE

Cr1a
trf
rRNA

LINE

G
CG41521-RA¦CG41521

LTR

opus

LINE

R1-elementrRNA

1326 CGAGAUCAAACCGCCGAGCUGCAACAAC

6

0 repeat1327 UGCACUAAUAUAAGCCCUGACGUCC

60 transposon(TTG)n1328 UCCCUAGAAGAACAUUGAAGCGC

60 Su(Ste)1329 AGGGAAAGGAGCCGAGGCGUCGAC

6

0 transposon

1330 UCUCAUCGUCGUAGAACUAGCCCG

60 Su(Ste)

1331 AGUUCGGUCCUGAGUGCGAGCUCC

6 no match

1332 CACGAUGAUCGAUGACGAACUACGAA

6

0 transposon

LTR

ninja-Dsim-like

1333 GGACAAAACAACAUCCCGGGAAAUGA

6

0 transposon

LINEbaggins

1334 AGGACGGUGGCCAUGGAAGUCGGAAUC

6 no match

1335 AGCAGACAAAGGACAACGAGAGA

60 transposon

LINE

X

1336 GAAGAAGAGAUGCCCAGUGAGUUUGC

60 transposon

LTR

ninja-Dsim-like

1337 AGCAGACUCCAUCGGCAGCUAUG

6

0 coding gene

CG9936-RC¦skd

1338 GAGCGCACGUGUUAGGACCCGAAAGAU

6 no match

1339 AAGCGAAUGAUUAGAGGCCUUAGGGU

60 ncRNA

rRNA

1340 GGAGCCGGGCGUGGAAUGCGAGUGCCUA

6 no match

1341 UGCUUCAUCGUUAGACGGCUCGGGC

6

1 AT-chX

1342 AUCGCUGAUGAGACACCGGGACC

6

0 transposon

1343 ACCAAACCAAGGCAAACUCCGAAUACCG

6 no match

1344 CCGUGGGUGGUGGUGCAUGGCCGUU

62 ncRNA

1345 AGGUAGGGAGUUUGACUGGGGCGGUAC

60 ncRNA

1346 AGCGAAUUAAUCGCGAGGCUGCAA

6

1 transposon

LTR

mdg3

1347 UCUGAAACAAGAAGAGGACGACG

60 transposonLow̲complexity

F-element

1348 AACGAAAGUGGACAGCGAGCGAAAGC

6

0 transposon

LTR

diver21349 CCGAACUUGAGACCGCCCCUGGAUUU

6 no match

1350 ACGGGUGACGGGGAAUCAGGGUU

61 ncRNA

1351 AGCUUAUCCUUUGCUUGAUGAUUCGA

6

0 ncRNA

1352 GAGAAACUGACAAAGGCCCUUGA

6

0 transposon

LTR

gypsy81353 GGAGAAGCCGGCGGGAGCCCCGGGGAGA

6 no match

1354 CCCCCAAUGAGAUGGCCUUUGGCGAGA

6

0 transposon

LTR

Quasimodo

1355 UGGAACGAAAUUGGCCUGAUUAGCGGA

6

0 transposon

LTR

GATE

1356 GCAGAGAGAUAUGGUAGAUGGG

60 ncRNA

rRNA

1357 GACCAUAAAGAAGCCGUCGAGA

60 ncRNA

rRNA

1358 GGAGCGGUGGCCGAGUGGUCGAAGG

6 no match

1359 UGGACAACCCUGGGGAAAGUACAC

6

0 transposon

1360 UCCGAUUUCAAGUACCAGGCGAA

6

0 repeat

RSP

1361 AUUCACCAAGCGUUGGAUUGUUCACCC

60 ncRNA

rRNA

1362 AAUACAUGCCGACGGGCGCUGACCCCCUU

6 no match

1363 CUUGUUCCCCGGAUAGUUUAGUUACG

60 ncRNA

rRNA

1364 CGGGAUAAGGAUUGGCUCUGAAG

6

0 ncRNA

rRNA

1365 CUGGAUACUAGGUAUCGACGCCGAU

6

0 no annotation

1366 UACAAACAGAAUUCCCGAAUGAGAG

6

0 transposon

LINE

Cr1a

1367 ACAAACAGUACACCUACUAGCCCAUGU

6

0 transposon

LINEbaggins

1368 AGGGGAUCGAAGAUGAUCAGAUACCGUC

6 no match

1369 CCCUUGAUAAACGGUUGACUUUCGGC

60 transposon

LINE

Rt1b

1370 GAAGCUGUCAGUAAACUCACAAU

6

0 transposon

LINEbaggins1371 UAUAGCUAAUUAACACAAUCCCGGGGC

60 ncRNA

1372 GGCGAGCGGACGGGGAACAGCCCA

6 no match

1373 GCGAAUGAUUAGAGGCCUUAGGGU

60 ncRNA

1374 UACAUCGAAAAGCGAGUUGACGUG

60 transposon

1375 UAUGGUUCUCUCAGUCGCUUCCCGGGA

6

1 ncRNArRNA

1376 GUUCGAUUCCGGAGAGGGAGCCUGAGA

6

0 ncRNArRNA

1377 AGGUUCGAGUCCUGCAGUUGUCGCC

6 no match

1378 CCGAACUUGAGACCGCCCCUGGACAAC

60 Su(Ste)

Su(Ste)1379 UGACGCCUUGCGUGUUACGGUUGUUUC

60 ncRNA

1380 GGAACUGGGAAGGUGGGACUUGAGU

60 transposon

LINE

G2

1381 AAUAGGGACGGUCGGGGGCAUC

6 no match

1382 AGAGCAUAAGGACGACGAAAGUGA

6

1 transposon

LINE

Doc3

1383 AUCCCACGGAACACCCGAGCAAUGCC

60 transposon

LINE

G2

1384 CAGGGACACAGCACUAUGGAGCAG

6

1 transposon

LINE

BS

1385 UGAGAUAGAUUUCCGUGAGUUCAAAA

6

0 no annotation

1386 GACGCGAGAGGUGAAAUUCUUGGACC

60 ncRNA

1387 AAGGGAACGGGCUUGGCGGAAU

6 no match

1388 UGUGCUAGAAGACGAUUUUCGGGCCGA

6

0 transposon

1389 GUCUGAUGACCAAGGUUGUGCUCGAA

6

0 coding gene1390 ACAAAACAUACUAAAACACCGUUGA

6

0 transposon

1391 UGGUUAAUUCCGAUAACGAACGAGA

60 ncRNA

1392 AAAGCCUAGAGGUGAACCCGAUACAA

6

0 transposon1393 CGCCGGCGGUGGUAGGUCUGAGU

60 coding gene1394 UCCGAACGUACCACGGUGCCCCAGUGA

6

0 transposon

1395 ACCCUACUGAUGAAUGUUACCGC

6 no match

1396 UCUCAUCGUAGUAGAACAAGCCCGA

6

1 Su(Ste)

Su(Ste)1397 AGGGGCGGUCUCAAGUUCGGCAG

60 Su(Ste)

Su(Ste)1398 GCCGAACUUGACGACCCACGAUAAUCCC

6 no match

1399 AAAGAUAAUAUUCCGAUACAUUUUCC

6

0 transposon

LINE

Circe

1400 CUGGCGAAUAAAAGUAAACGAGCAAA

60 transposonLow̲complexity

F-element

1401 UAGUUGCUUUCCGAGCUCGAUGGUC

6

0 no annotation

1402 UCGAGAUGGAGAGGCUUCAGAGUGA

6

0 transposon

LTR

ninja-Dsim-like1403 AAACCUGAAGAUGAUCCUGAGUCGUC

6

1 transposon

LINE

Helena1404 AUGCAAAUAAAUAGCCAUUGCCGAGGGA

60 coding gene1405 UGCGCGAAGAAGGAGGACGAGAA

6

0 transposon

LINE

G2

1406 AAGGGCUGGGUCGGUCGGGCUGGGGC

6 no match

1407 AAAUCCCGGAAGCACAUUUGCAACGC

6

0 transposon

LTR

opus

1408 GGAGAAGCCGGCGGGAGCCCCGGGGA

6 no match

LTR

G4
Su(Ste)LTRninja-Dsim-like
Su(Ste)AT-chX-B
LTR

accord
rRNA
rRNA

rRNA
rRNA

LINE

Fw2

rRNA
rRNA
LTR

Max

rRNA

rRNA
LINE

Cr1a
CG13434-RA¦Nnf1a

LINE

RR49783rRNA

LTR

Quasimodo
CG5467-RA¦CG5467

Low̲complexity

F-element

CG32199-RA¦CG32199

1409 GCCCCAAAGAUUUUCCCCGGCACGU

61410 GAUCGGGGUCCGGGACAGCGCAUGGCA

6 no match

0 Su(Ste)1411 AUGAGGCGCUCGGUGUCGGUGA

6 no match

1412 GCAUUCAAUACACCGAGAUGGCCCAA

61413 GGAACUGUGAGGGGAUCCUCAA

6 no match

1414 UCUCUAAUCUAUGGGUGGUGGUGCAUG

6

1 ncRNA

1415 CCGAUUGGUAUUAGCGAGUUUAUC

6

0 transposon

LTR

opus

1416 AACCCUGAACGCGCCCGAUCUCGU

6 no match

1417 CCAAACUAAAGCCGACGAGAAGCGU

50 transposon

LTR

invader61418 GCGUGUCCGAUCAGACGAGAUGGCCA

50 transposon

LINE

F

1419 GGGAAAGAAGACCCUGUUGAGCUUGA

5

1 repeat1420 GUCGUGUUGAUCGGUACUUGCUGC

50 transposon

LTR

invader41421 CCAAAAGAUAAAAACGUUUACGAGCA

5

0 transposon

LTR

mdg3

1422 CAUCGAAGGAACGAUCGCAAGGCAGU

5

1 transposon

LTR

flea

1423 AUGCUCUCGAAUGUAUGCCCGAUAU

5

0 transposon

LINER1-element

1424 AUGGCUCUCUCAGUCGCUUCCCGGGUA

51 ncRNA

1425 GUAUACCUAUACAUUACCGCUAAAGU

5

0 ncRNA

1426 CCAGACGUAAUACUCCACUACCCGGUU

5

2 transposon

1427 ACGAGCCGGUGACCAUAGAAGUGCCCGU

5

1 coding gene

1428 UGAUUAGACAUUCCCGUUUCUCGCGA

5

0 transposon

1429 UCCGAUAACGAACGAGACUCAAAUAUAU

50 ncRNA

rRNA

1430 GACGCGAUGUGAUUUCUGCCCAGU

5

2 ncRNA

rRNA

1431 GAGAGAGGACGGGAGCGGCGGGGGC

5 no match

1432 GAGCCGUACCUGUUGGUUUGUCCCAUU

50 ncRNArRNA

1433 ACGAGAGGUCCCGGGUUCAUUUCCCG

52 ncRNAtRNA

1434 AUCUUAUGGUAUUGGGUUUUGAUGCA

50 repeat

LSU-rRNA̲Dme

1435 AAGUGUUAUUGUGGGCCGGUACU

5

1 ncRNArRNA

1436 CUCGCCGAAUCCCGGGGCCGAGGGA

5 no match

1437 AUGACAAGAAACCCCGAUGUAUUCA

5 no match

1438 GCACCGUGUACGAUUACUUCUAUGGCU

50 coding gene

1439 UUGGCUAUUUCUAAUAUAUUUUCAA

5

0 transposon

1440 CCAACUGUGAGGGGAUCCUCAA

5 no match

1441 GGGUUCCGGGGGAGUAUGGUUGC

5 no match

1442 GCGUCCGGGACUCAACUACGUGGACUA

50 coding gene

1443 UGCAAACGAACGAGAGACGGCAACC

5

0 transposon

1444 ACCCUGAACGCGCUCGAUCUCGU

5 no match

1445 UGAGACUAAAAACGGAUUGCGGACC

5

1 no annotation

1446 CCUAUCUUGAGCGGCGAGGACCUUA

5

0 transposon

1447 CAAGGAGCACCUUCGACCGAUCUG

5 no match

1448 UAGCUAAUUAACACAAUCCCGGGGCG

50 ncRNArRNA

1449 GUUUGACUGGGGCGGUACAUCU

50 ncRNArRNA

1450 AACACGGGAAAACUUACCAGGUCCGAAC

50 ncRNA

1451 GAUGUAGAGAAACGGUUGACAUUUAU

50 transposon

LTR

invader31452 UGUGCUAGAAGACGAUUUUCGGGCC

50 transposon

LINE

Cr1a

1453 CCGGGAGACACCAAUGCUGGCCAAG

50 coding gene1454 UAUGGCUCUCUCAGUCGCUUCCCGGGAA

50 ncRNA

1455 UUCGAUAGUACAGGAGGAGUUGCUAGA

5

0 transposon

1456 CAUAUCCGAGGCCCUGUAAUUGGAAU

50 ncRNA

1457 ACCCUGAACGCGCCCGAUCUCGUCUG

5 no match

1458 AACAAUUACAACCGAGGCAACAAUA

5

0 transposon

1459 GCACCGAGAGAUUCGCCUACGCCGGC

50 coding gene

1460 UGUGUCCCGGGACCCACCAAAUUGUGAG

5

0 transposon

LINEbaggins

1461 CCCAGCGCGCCACCCGGCUCCGUAGCUGUAA

5 no match

1462 CAGUUCAUCAAAGCGCCUUACUGGAGU

5

1 transposon

LTR

flea

1463 UGUUACAUCGUUAGACGGCUCGGGC

51 AT-chX

1464 AUGUGAGGGGAUCCUCAA

5

2 no annotation

1465 UUCGGGAUAAGGAUUGGCUCUGAAG

5

0 ncRNA

1466 UGCCAGGCCCGUAUAACGUUAAUGAU

5

0 ncRNA

1467 UGCUCUCGAAUGUAUGCCCGAUAC

5

1 transposon

1468 UACCUUGGGAAUGGCUUCACAGUU

5

1 ncRNA

1469 UGCGACCGCCCCUGGACGACCCA

51 Su(Ste)

1470 UGCUAAGGGAUCCAGUUGCGAUAA

5

0 transposon

1471 CUCGAGAAUACAAUUCCAGUGGCUGAU

5

1 no annotation

1472 CCAGCUUGGACCGAACACUUUGAAC

5

0 Su(Ste)

1473 CAAGACCAGAACCAAUGGACGUGGAC

5

0 transposon

LINE

HMS-Beagle2

1474 AUAGAACCUGAAACCGUAUGCGUAC

5 no match

1475 CUAACUGUGAGGGGAUCCUCAA

5 no match

1476 ACCCUUGAUAAACGGUUGACUUUCA

5

0 transposon

LINE

BS

1477 GGUCAACUGUGAGGGGAUCCUCAA

5 no match

1478 GUAAAUCUUGAGAUCGGGCGUUC

5 no match

1479 CCGAAGAUGACCAAGUUGGCAACCGC

52 transposon

LTR

gypsy61480 GGACACAACAACAUCCCGGGAAAUGA

5

0 transposon

LINE

Fw2

1481 UAACGACCAGACAUACGGCAUUAU

5

1 transposon

LINER1-element

1482 UCCGUCGAGGUGGUGGUGCGAUC

50 transposon

LINE

R1

1483 GCCGGGCGUGGAAUGCGAGUGCCU

5 no match

1484 AAGAGGGACGGCCGGGGCAUUCG

5 no match

1485 GCAAUCAAUACAGCGAGAUGGCCCAAA

5

2 transposon

LTR

Quasimodo

1486 CUGGACGUGAUCCUGAAGCCGGUGA

50 repeattrf

1487 GAACUUGAGACCGCCCCUGGACGA

50 Su(Ste)

Su(Ste)1488 AUCUGGUAAAGCGAAUGAUUAGA

50 ncRNA

1489 UAUUAUUAAGAUGGGCUUGUAGGU

50 transposon

1490 GUCUGGUUAAUUCCGAUAACGAACG

50 ncRNA

1491 UGUUACAAAAAAAGCUUCGUCUCGA

5

2 transposon

0 transposon

Su(Ste)LINE

QuasimodorRNA

LSU-rRNA̲Dme

rRNA
rRNA
LTR

HMS-Beagle
CG16742-RA¦CG16742

LTR

rover

CG2100-RA¦CG2100
DNA

1360

CG17686-RB¦DIP1
LINE

I

LINE

Cr1a

rRNA

pseudogene
rRNA
LINE

Doc3
rRNA

LTR

Stalker2
CG17210-RA¦scpr-B

AT-chX-B
rRNA
rRNA
LINE

R1-elementalphagamma-element
Su(Ste)DNA

1360
Su(Ste)rRNALINEbagginsrRNA

LTR

gypsy3

1492 UGUUUCAUCGUUAGACGACUCGGGCGU

52 AT-chX

1493 UAGCAAGUUAAUUGAACCUGAUCA

5

0 transposon

Unknown

AT-chX-B
RR50960

1494 ACCGAUUAAUCGCGAGGCUGCAAGA

5 no match

1495 ACACCCUGAACGCGCCCGAUCUCGUC

5 no match

1496 AGAACGAUGACGAUCCCACGGCUGGAG

5

0 transposon

LTR

ninja-Dsim-like1497 GCACACAGAGGAGAGCAGAUGAGGGCA

5 no match

1498 CGAGAAAGUACAAGAGGGUCGAU

5

0 transposon

LTR

frogger

1499 GGAUCCUCAACUGUGAGGGGACCCUCAA

5 no match

1500 CAAGAUAUGACCAAAGCAAAGAC

5

0 transposon

LINE

Cr1a

1501 GAGCCGGGCGUGGAAUGCGAGUGCCU

5 no match

1502 GACUAGCUGGCCGAGGAUUUGAUAU

51503 AUUGAGCGAACCCGGGGAACUGA

5 no match

1504 UAAUAAAACAACGACCCGCUACCGGA

5

0 transposon

LTR

opus

1505 UACAUCGAAAAGCGAGUUGACGUA

50 transposon

LTR

invader4

1506 AUUGGCCCCUAUCCGAGAUGCGCA

5

0 no annotation

1507 UUACCGUACGAUCAGGACAACCGU

50 transposon

LTR

mdg1

1508 AAAACCUGAAGAUGAUCUUGAGUCGC

5

1 transposon

LINE

Helena1509 GCACCUGGGAAACCCAACCCUCAUGGAG

5

1 transposon

LTR

ninja-Dsim-like

1510 AUACAAACGAGGGACUAACGGAGC

50 coding gene

1511 UAGUAAAUCACACACCUCUAUCGA

5

0 no annotation

1512 GACACCGAAACAUGUGGCUGCGAG

5

0 transposon

LTR

diver21513 AGAACAACAGUGCAGACGGCGCCCGC

50 transposon

DNA

H

1514 GAAGCUGCGCGCUCGGUCGAAGAGGACGA

5 no match

1515 GACGGACCGCAAUGCCCGCUCACA

5

0 coding gene

1516 AACAUAUGCAUUCCACAAGCCGA

5

0 transposon

LINE

Doc

1517 CAAGCAUUCGACAAAGUCUGGCUCGA

5

0 transposonLow̲complexity

F-element

1518 UGCAACGGGUAACGGGGAAUCAGGGUU

50 ncRNA

rRNA

1519 AACUCAAAGAAAAAGACGAUGACU

50 Su(Ste)

Su(Ste)1520 UAAUUCCGAUAACGAACGAGACC

5

1 ncRNArRNA

1521 UCGAGAAGCGAACCCGGCGAACU

5 no match

1522 CCGUAACUUCGGGAUAAGGAUUGCCU

5

1 ncRNArRNA

1523 UGUGAUGCCCUUAGAUGUCCUGG

50 ncRNArRNA

1524 GCAUCGGUGGUUCAGUGGUAGAAUGC

50 ncRNA

1525 CAAGCUAGACUAUGUAUCCCGGGUAA

52 transposon

LINE

Doc

1526 ACCAAGAUGAUCAACUCGUGUUAUUC

5

0 transposon

LINE

Cr1a

1527 CAGGUGGACUACAAGGGCGAGAGC

5 no match

1528 CAAGAUAUGACCAAAGCAAAGACACU

5

0 transposon

LINE

Cr1a

1529 GGGCUCCGGGGGAAGUAUGGUUGCA

50 ncRNA

1530 GAUACUUUUAUCAGAGGCCUUCGAGG

50 transposon

LTR

HMS-Beagle

1531 ACCCUGCACGCGCCCGAUCUCGUC

5 no match

1532 CAAACUAAUCACACCCACGCUUUGGA

5

0 transposon

LINE

INE-1

1533 AAACUGUUCACAUGAACUUGGAAUUCCC

50 ncRNA

1534 ACGGGAAACCUCACCCGGCCCGGACAC

5 no match

1535 GGUUAAUUCCGAUAACGAACGAGA

50 ncRNA

1536 AUAGAUAUUAGAGAAUAUGUUGA

5

0 transposon

1537 UUCGCAAAAGUUGACCGAACUUGAU

50 ncRNA

1538 AAUGAUGAUGAGCGAUAUUCAACU

5 no match

1539 CCGAUGAACCUGAAUAUCCGUUAUGGA

50 ncRNA

1540 ACCGAUAUAAUUCUAACUGAGCACCC

5

0 transposon

LTR

G4

1541 GGCGGGUGUUGACGCGAUGUGAU

5 no match

1542 GGAGCCGGGCGUGGAAUGCGAGUGCC

5 no match

1543 CAUCCUAGAAUCGACCGACCAGCUGU

50 transposon

LTR

invader3

1544 UGCUCUCGAAUGUAUGCCCGAUACU

5

2 transposon

LINER1-element

1545 UGCGCGAAGAAGGAGGACGAGA

5

0 transposon

LINE

G2

1546 UUCAAGGUUACCCCAGGAUGCUGUU

5

1 repeattrf

1547 GCCGAACUUGAGACCGCCCCUGGA

50 Su(Ste)

Su(Ste)1548 CUCUCCGGGAGACACCAAUGCUGGCC

50 coding gene1549 UUAAUAACUAUAAGGCAUUUUCCGAA

5

0 transposonDNA

hopper2

1550 AUGAACACAUAGGGGCUUCGAGG

5

2 transposon

LTR

HMS-Beagle

1551 GGGUUCCGGGGGGAUUAUGGUUG

5 no match

1552 UAACUGCGAAGUCGAUCAGGUCCGGC

50 transposon

LINE

F

1553 GGACUCAUAUCCGAGGCCCUGUAAUUGG

50 ncRNA

1554 GACCAUGAGAUUACACUGGAGGA

5

0 transposon

LINE

Cr1a

1555 AACGAGAGAAGCAUUUUUGCCGCA

5

0 transposon

LTR

gypsy121556 UUUUCUUUGAAGAUGGCCCACAUAA

50 repeat1557 CGAAUAGUGAUUGCGAACCGCCCGA

5

0 transposon

1558 GACUUCCAACUGGCCGAUAUGAA

5

0 coding gene

1559 GGCACAAUACUUGUUCGAGCGAA

50 ncRNA

1560 GGCUAGCUCAUUUCCCGGGAUGUU

5

1 transposon

LINE

Fw2

1561 CACAGAGUACGGGGCUUACUGA

5

0 transposon

LINEbaggins

1562 GGACUCAUAUCCGAGGCCCUGUAAUU

50 ncRNA

1563 AGAGAUGACAAUGUGGCACACGC

50 transposon

LTR

1564 ACCGUUUACACAUUUAUAUUUUUGUU

50 transposon

DNA

1565 CCAGAACGUGUAUUGCUACCAACGGA

5

0 transposon

DNA

H

1566 GCAUUCAUAACGAGGUUGCGCAUUGC

50 transposon

LINE

Doc4

1567 GCAGAUCCAGAACGUGUAUUGCUACC

5

0 transposon

DNA

H

1568 CGCCGAAUCCCGGGGCCGAGGGAGCGAGA

5 no match

1569 UAGUACAUAUUAGGGUAGUUUUUGC

50 transposon

DNA

1570 UGCUCUCGAAUGUAUGCCCCGAUAUA

5 no match

1571 ACCUGAUUGAUAGCGUAGACGACGA

5

0 transposon

LINE

Rt1a

1572 GUGGAUGAGAUCUCGUCACCCGUU

5

0 transposon

LINE

X

1573 UACAAACACACUUUGGAGACUUA

5

0 transposon

LTR

invader1

1574 AUGAUUCAUCGUUAGACGGCUCGGGC

52 AT-chX

0 Su(Ste)

Su(Ste)CG6141-RA¦RpL9

CG3715-RA¦Shc

tRNA

rRNA

rRNA
rRNA
LTR

invader4
rRNA
rRNA

pseudogene

rRNA

trf
DNA

S
CG9074-RA¦Mst57Da
rRNA

rRNA
Max
1360

1360

AT-chX-B

1575 GAAACAAUCAGUGGUUUCCCUAAGC

5

0 transposon

LTR

DM88

1576 GACGAAAUAAACAAGCACUCGAGCA

5

0 transposon

Simple̲repeat

I

1577 UUGAAACUGAAGCACGAAUUGUCCA

5

0 transposon

LTR

Dm88

1578 GGAUCCUCAACUGGAGGGAAUCCUCAA

5 no match

1579 UACAUUCAGUGGCAAGGUUAACCGA

5 no match

1580 UGUUUCAUCGUUAGACGGCUCGGGA

5

1 AT-chX

1581 AAAACCUGAAGAUGAUCCUGAG

50 transposon

LINE

Helena1582 CCACAGAGUACGGGGCUUACUAAA

5

0 transposon

LINEbaggins

1583 UCAUAUAUCGAGCAACUCUCUCCC

50 transposon

LINE

Doc

1584 AGAGCCAUCGGACACCAUUGAGA

5

0 repeattrf

1585 CAGAGCGAGCAGGACUGGGCGGCGG

5 no match

1586 AGUCGAGAGUGGACGGGAGCGGC

5 no match

1587 UGCCGGAGCGAGGAGGAGGACUAGC

50 Su(Ste)

Su(Ste)1588 GACUUGAUCUCGGUGUUCAGUACACA

50 repeat

LSU-rRNA̲Dme

1589 CGCGGCUAGACGGAAAGACCCCGU

5 no match

1590 UGUUAUAUUAUCCUCGAGAAUGGA

5

1 transposon

1591 CCUCAUCGUCGUAGAACAAGCCCGA

5

1 Su(Ste)

1592 GAGACCCGUCGCCGCGCUCUCCCCCCUC

5 no match

1593 UCCGAAAGAGAAAAAUAUUCAUCGGC

50 transposon

LINE

HMS-Beagle2

1594 UACGACGAGAACGAAAUCAGCGCGAU

5

1 transposon

LTR

frogger

1595 GGCACAAUUACCAGAAGAUGUUGAC

5

0 transposon

LTR

roo

1596 CAAUGCUUAACGGAACACGAUCGAG

5

0 transposon

Unknown

RR50960

1597 CAAGCCAGAGAAUCCGGAGAGCG

5 no match

1598 CGCUAGCUCAUUUCCCGGGAUGUUGU

50 transposon

LINE

Fw2

1599 CGCUCUUCACCACAGAGUCUCCGA

5

0 transposon

LTR

GATE

1600 CAAGCUAGACUAUGUAUCCCCGGGUAU

5

1 transposon

LINE

Doc

1601 UUAUGGCUCUCUCAGUCGCUUCCCGGGA

50 ncRNA

1602 AACGAGCGCAACCCUUGUCCUUAGUUA

5 no match

1603 GCCAGAGAACCCUCUAAUUGGGCCCGAA

51604 AAGGCCGGCGGGGAAGGUGGCUCGGG

5 no match

1605 UGAGACUACAAACGGAUUGCGGACCGC

5

1 no annotation

1606 GUUCCUCGGGAUCAAGGGCAACCAGU

5

0 repeattrf

1607 UGUUUCAUCGUUAGACGGCUCGGA

5

1 AT-chX

AT-chX-B

1608 AGCGUAGUCGAUGGGAAACGGGU

5 no match

1609 GAUGUCCUGGGCUGCACGCGCGCUAC

5

0 ncRNA

rRNA

1610 AACGAGUGAACUGGCAACAUUUCGA

5

1 Su(Ste)

1611 UGCUCUCGAACGCUUGCCCGAUAU

5

0 transposon

1612 AGCGUAUUACCGGUGGAGUUCUUAUAU

50 ncRNA

1613 GAUAGUCGGGCUUGAUUGGGAAA

50 ncRNA

1614 CUACGAGGAAGCAGUGGAGGAUUGCU

50 transposon

1615 GCACACAGAGGAGAGCAGAUGAGAGA

5 no match

1616 CGGGAAAACUUACCAGGUCCGAA

50 ncRNA

1617 AUUAUAAGGAUGAUGAUACCGAU

5

0 no annotation

1618 ACGAGCGCACGUGUUAGGACCACGGAC

5 no match

1619 UGAGACCGUACCCGAAACCGACACA

5 no match

1620 UCCGAGGAACCCGUUGAUCCAGCU

5

1 no annotation

1621 CGACUCGUUUUUAAAUUUCGCAACAAG

5

0 transposon

1622 GGCGGCGACGACCCAUUCGAACGUC

5 no match

1623 GUCGGCGUCCGGUGAGCUCUCGCUGGCCC

5 no match

1624 GACUGCAGAUCGAGAGGUCCCCGGU

50 ncRNA

1625 GAUAAACAUAGGCAAGGACUCGU

50 transposon

1626 CGGGAUAAGGAUUGGCUCUGAA

50 ncRNArRNA

1627 CCGAACUUGAGAUCGCCCCUGGACGACC

50 coding gene

CG42398-RA¦SteXh:CG42398

1628 ACUCGCCGAAUCCCGGGGCCGAGGGG

5 no match

1629 ACUCGCCGAAUCCCGGGGCCGAGGGAGU

5 no match

1630 UGGGUUCCGGGGGAGUAUGGUUGC

5 no match

1631 CCGGUCCCGGGACAUGGCGUGGUGGGUA

5 no match

1632 CGAAUCAACAAAUUGCUCCGAUAU

5

1 coding gene

CG41545-RA¦CG41545

1633 CAACCGUGAGGGGAUCCUCAA

5 no match

1634 GGAGAUGACCACGUUGAUAGGCU

5 no match

1635 GGAACAAGUAGCUGCCCAGAGGCGAC

5

0 transposon

LINE

R1

1636 AAAACCCGAAGAUGAUCCUGAGUC

5

1 transposon

LINE

Helena1637 CGCCCUAGUUCUAACCAUAAACGAUGCC

50 ncRNA

1638 AGAGAACGCACCCGCUUGACCUUAC

5

0 transposon

LINE

G2

1639 CACGAUGACAUAGGACAUUACGGCA

50 transposon

LTR

flea

1640 AAACCUGAAGAUGAUCCUGACUCG

5

1 transposon

LINE

Helena1641 CGCCAGCUAAGGUCCCUAAAAUUGGCU

5 no match

1642 AACUUCGGGAUAAGGAUUGGCUCUA

5

1 ncRNArRNA

1643 CUGGCUCUCUCAGUCGCUUCCCGGGA

5

1 ncRNArRNA

1644 CUGUGAGAGAGUAGCACGACGCCAGC

5 no match

1645 UGCACUAAUAUUAUCCCUGACGUCAGA

5

0 transposon

LTR

G4

1646 CAGUACUUUACUACUCUUGACCUC

50 transposon

LTR

gypsy121647 CACAGAGGAGAGCAGAUGAGAGCA

5 no match

1648 AGAGAGAAGACCCUCAGCCUACGAG

50 coding gene

1649 UAUGCUUCUUACUAGGGUACUUCCCGA

5

0 transposon

LINE

G2

1650 CAAUCUUAGAUAAAAACCCGAACGUG

50 transposon

LTR

gypsy41651 GCUGAGAAGACGGUCGAACUUGAC

5 no match

1652 AAUCGCUCGAUGUCGUGAGGUGACCGC

50 no annotation

1653 CCGAUCAACUUCUUUAUCAGCGAU

50 coding gene

1654 UACAAUCUCCGAGCAAGACCCCGA

5

0 transposon

LINE

Circe

1655 AACUUCGAUAGCGAAAUGACUCUGU

50 transposon

LINER1-element

1656 UCCGAGGCCCUGUAAUUGGAAUGAGUAC

50 ncRNA

1657 UGAGACUACAAACGGAUUGCGGUACC

5 no match

0 transposon

AT-chX-B

LTR

IdefixSu(Ste)rRNALINEbaggins

Su(Ste)LINE

R1-element
rRNA
rRNA

LTR

ninja-Dsim-like
rRNA

LINE

Cr1a

tRNA
LTR

GATE

rRNA

CG41521-RA¦CG41521

CG10602-RA¦CG10602

rRNA1658 AGGUUCGAAUCCUGUCUUCCCGACCA

5 no match

1659 GCGCCGCGGAGCCUCGGUUGGCCUCGGA

5 no match

1660 ACUCGCCGAAUCCCGGGGCCGAGGGAGCGA

5 no match

1661 UCUCAACUGUGAGGGGAUCCUCAA

5 no match

1662 UAAGUUACGAACCCUCUUCUUGCGA

51663 ACUGUCCCUACCUACUAUCCAGCCA

5 no match

1664 AUAACCUUGAGACUGAGGGAGGGGC

51665 AAACCAUUCGUAGACGACCUGCUUC

5 no match

1666 GCAGACAACAUUUACGGUUUCCAUG

51667 AACCCAGACCGUCAGCUAAGGUCCC

5 no match

1668 GGCCGCCCGCGAUCCGCCCAAGUGCCGU

51669 GUGUCCUAAGGCGAGCUCAGGGAGGAC

5 no match

1670 AGCCCGUGGACGGUGUGAGGCCGGUAGC

5 no match

1671 CAAAGGCAUGCCCGAUGUCCGCGAGA

51672 CUCCCGGGGCUACGCCUGUCUGAGCGUCGCU

5 no match

1673 GCUGAGAAGACGGUCGAACUUGACU

5 no match

1674 UGAGAUAUGCUAGCAGACUGGUGA
1675 GCAUUCGAGACCCAACGGCACGUGAAU
1676 ACCCUACUGAUGAUGUGUUGUUGCCA

5 no match

1677 UAGGCAAACUAGGUGGGUCCCGGGACA
1678 CUGCCAUCGAUGCUGACCCCCUACCCGC
1679 GGAUCCUCAACUGUAAGGGGAUCCUCAA

5 no match

1680 UUGGACCGUCGUAAGACUAACUUAA

51681 UGAGAAGACGGUCGAACUUGACU

5 no match

1682 UACUCUGGAAGGACGACCACGUUGU

50 transposon

LTR

ninja-Dsim-like

1683 UUCGGCCCGAACCCUUCUGGUGU

50 transposon

LINEbaggins

1684 AAUGAAACGACAGUGUCCCGCGGA

5

0 transposon

LTR

springer

1685 ACCGAAUUAAUCGCGAGGCUGCAAGACA

5

0 transposon

LTR

mdg3

1686 GACUGGGGCGGUACAUCUCUCAAAU

50 ncRNA

1687 AAUAAUACAAACAGAGUUCCCGAAUGAA

5

0 transposon

LTR

copia

1688 UGCUCUCGAAUGUAUGCCCGAUAUACG

5

0 transposon

LINER1-element

1689 GGUGGUGCAUGGCCGUUCUUAGUUCG

50 ncRNA

1690 GGAUCCUCAACUGUGACGGGAUCCUCAA

5 no match

1691 GCGGAAAGAGAGUAAUUUUGGC

50 transposon

LINE

Cr1a

1692 UACGUCAACAUAUCAGGGCAGCCCGA

5

0 transposon

LINE

Doc4

1693 UAGCUAAUUAACACAAUCCCGGGG

50 ncRNA

1694 CAAGCCAAUCUGGACGUACGGAA

5

0 transposon

1695 GGACUCCGAUCCUAGAGCGCGGCGUGGC

50 coding gene

1696 ACCCUUGAUAAACGGUUGACUUU

5

0 transposon

LINE

Rt1b

1697 AUCAAUCGCUGAUGAGACACCGGGA

5

0 transposon

LTR

accord1698 CGCUUCCAGAACAAGUGCCUGAGGCUAA

50 transposon

LINE

G

1699 UCAAAUAGAAAUGGACUCAGAGU

50 transposon

LTR

rover

1700 UGCAAGAUAAAGACCCUUCUACCUGCGC

50 transposon

LINE

Helena1701 CAUGGUUGCAACGGGUAACGGGGAAU

50 ncRNArRNA

1702 AAACCGGAGGAAGGUGGGGAUGACGUC

5 no match

1703 AGGUGUCCCAAGGCCAGCUCAGUGC

50 ncRNArRNA

1704 UACACACUCAUCAACCAAAGGACG

5

0 no annotation

1705 GGGGAACUGAGGAGCGCAUUUCAA

5

0 transposon

LTR

flea

1706 CGCUUCAGGAACCUAUUUCGGGCUGAAA

5

1 transposon

DNA

invader2

1707 CCGUACUUUACUUUUGCAACAAAA

5

0 transposon

DNA

1708 CGAGGCCCUGUAAUUGGAAUGAGUACA

5

0 ncRNA

1709 CGACCAAUAAAACGAUUAAGACCAGC

5

0 transposon

1710 ACACGGGAAAACUUACCAGGUCCGAAC

50 ncRNA

1711 UGUUUCAUCGUUAGACGGCUCGGGGC

52 AT-chX

1712 GACCAUAUCCGAAGACGCGGCGCUAGU

5

1 transposon

LINE

F

1713 AACUACUGGACCAGAUGAUAGA

5

0 transposon

Unknown

RR50960

1714 AAGAAGCGCUACGGAGAAUAUUACUC

50 coding gene

1715 CAAGAUAUGACCAGAGCAAAGCAA

50 Su(Ste)

1716 UACAAUCUCCGAGCACGACCCCGA

5

0 transposon

1717 GGUUCCAUGGUGUAAUGGUUAGCAC

50 ncRNAtRNA

1718 CCGAACUUGAGACCGCCCCUGGACG

50 Su(Ste)

Su(Ste)1719 UCCGAGCUAAUAUGGCACCAAGCUGA

5

1 no annotation

1720 CGUUCAAUAAUGACAGAGGUACAUCU

5

0 transposon

1721 AUCUGUGGGAUUAUGACUGAACGC

5 no match

1722 UCGGAGGACAUGGUGCCAAAUGUGU

50 coding gene1723 UAUGCGAGCACCCGUUCCCAGGUU

50 transposon

LTR

opus

1724 GAAAGAGUCAACAGAAGCCUAGG

50 transposon

LTR

flea

1725 CAGGAAUCAAGGUGGCUAAGAGGACC

5

0 transposon

LTR

ninja-Dsim-like1726 GCUUCAUCCAAGAGAACUGUGCCCGA

5

0 transposon

LINER1-element

1727 AGCGUCCGACGAAUACCCUGGGGG

5 no match

1728 GGGCAAAUCAUCGCCGGCGACGGGAA

50 coding gene

1729 GCAUUCAAUACAGCGAGAUGGCC

50 transposon

LTR

Quasimodo

1730 GCCCGUAGAAAACCUUUGGAGUGC

50 transposon

LTR

HMS-Beagle

1731 UCGAGAUCAAGAUGUCAAAAGGGG

50 transposon

LTR

flea

1732 ACCCUGAACGCGCCCGAUCUCGUA

5 no match

1733 CCAGACUUGUCAACCUUCGAUGG

50 transposon

LTR

gypsy21734 CCGGAUCGAGGACAGUGUAUGGUGGG

5 no match

1735 GCAUUCGAGACCCAACGGCACGUGAUAU

5

2 transposon

LINE

INE-1

1736 ACCCGUUGAACCCCAUUCGUGAU

5 no match

1737 AACGAACGAGACCUUAACCUACA

5 no match

1738 ACCAGAGAUCUAGAGGGCCCAAUAAA

5

1 no annotation

1739 ACUUGUUCCCCGGAUAGUUUAGUUAC

5

0 ncRNA

1740 GCAUUCGCGUCGAGGCCCAGGAUU

5

0 transposon

0 transposon

LTR

opus

0 transposon

LTR

opus

0 transposon

LINE

Cr1a

0 coding gene

CG4691-RA¦CG4691

0 transposon

LTR

opus

5

1 transposon

LINE

G2

5

2 transposon

LINE

INE-1

5

0 transposon

LINEbaggins

5

0 transposon

LINER1-element

0 ncRNA

rRNA

rRNA

rRNA

rRNA
LINE

G2
CG30178-RA¦CG30178

1360
rRNA

LTR

McClintockrRNA
AT-chX-B

CG3354-RA¦Mst77F
Su(Ste)
LINE

LINE

Circe

Rt1a
CG32164-RA¦CG32164

CG33936-RC¦CG33936

rRNA
LINE

R1-element

1741 ACUUGUUCCGUGACUGCGUACCUU

5 no match

1742 CAAGAUAUGACCAAAACAAAGCAACG

51743 ACCGGGACCAGGCCAGUGCUCUUGUGA

5 no match

1744 ACCAAGAUCAUCAACUCGUGUUA

50 transposon

1745 CACCAAGCGUUGGAUUGUUCACCCAU

40 ncRNArRNA

1746 AAAGGAAUUGACGGAAGGGCAC

40 ncRNArRNA

1747 CUGGCUCUCUCAGUCGCUUCCCGGGAA

4

1 ncRNArRNA

1748 AAGAACGAAAGUCGGAGGUUCGAAGAC

4 no match

1749 UGGACAGAUAGAAAGAUUUCACUCCA

40 transposon

1750 UAGCGACGUCGCUUUUUGAUCCUUCGAU

40 ncRNA

1751 ACGUGGGAACGUGCCUUUAGGUUCGGA

4 no match

1752 UCAACUGUGAGGAUCCUCAA

4 no match

1753 CUGGUAAAGCGAAUGAUUAGAGGCCUU

40 ncRNA

1754 UCCGAUCUCCUGAGUCGGACUCCGAUAU

4

2 transposon

LINE

R1

1755 CCUGACCAGAAGAACCGUAAGGCA

40 transposon

LTR

micropia

1756 AGAAUCAACCGAAACUGGCAGUGAGA

4

0 transposon

Unknown

RR50960

1757 CUGUGAGGUGUGAGGAUCCUCAA

4 no match

1758 CCCGAUUUCAAGUACCAGGCGAACAGA

40 repeat1759 GGGAACUGGGAAGGUGGGACUUGAGUU

40 transposon

LINE

G2

1760 AGCUAAACGAAAGGACUAUCCCGG

40 transposon

LTR

gypsy3

1761 CCUGGCGUAGAGGUUAACCGUGAU

40 ncRNA

1762 GAGCGUCCGACGAAUACCCUGGGG

4 no match

1763 UUACCGAGAAGAGGAACAGAUUAG

41764 GCACACAGAGGAGACAGAUGAGAGCA

4 no match

1765 AAAGAGGAGAAGGUGGCUUUGAGA

4

0 no annotation

1766 UCUCAUCGUCGUAGAACAAGCCCAA

4

1 Su(Ste)

1767 AGCUUCAUCCAAGAGAACUGUGCCCGAU

4

1 transposon

1768 UGUUUCAUCGUUAGACGGCACGGGC

4

1 AT-chX

1769 UCUCAUCGUCGUAGAACAAGCCCCGA

42 Su(Ste)1770 ACCUGAUUGAUAGCGUAGACGAC

4

0 transposon

LINE

Rt1a

1771 GAAUCCUCAACUGUGAGGGGAUCCUCAA

4 no match

1772 ACGGGAAAAGAAAAUUUGGUUGCUGA

4

1 transposon

LTR

gypsy31773 GGUUCCGGGGGGAGUAUGGUUGC

42 ncRNA

1774 GGGGAACUGAGGAGCGCAUUUCAAA

4

0 transposon

1775 UGAUCCAAUACCAUCCCGUCAAGGUGCC

40 coding gene

1776 UCGAUUCCGGAGAGGGAGCCUGAG

40 ncRNA

1777 CAGACACGAACGACAUUUUGAUUA

40 transposon

LTR

Idefix1778 GAAGAAAUGAAUGCCUUCCUGAGCGA

4

0 transposon

LTR

Rt1c

1779 UACAUCGAGAAUCUCACGCCCACAG

4

0 transposon

LINE

Doc3

1780 CGAGAUAGUACGAAUCGGUUACGA

4

0 transposon

LINE

I

1781 ACCUGACGUAACAUUAUCCCAAACU

4

0 transposon

LINE

Circe

1782 GACCGGCAACGACGUUCCACACGC

4

0 no annotation

1783 AUACCACCCUGAACGCGCCCGAUCUCG

4 no match

1784 UGCAAUAUGAUGAACGUCAUCCGA

4

0 transposon

LTR

Rt1c

1785 AAAACAAAGCAUUGUGAUGGCCCU

40 ncRNA

1786 AACCCUGAAGCAAUUGAUGAUGUGA

4 no match

1787 GCGACCUCAGAUCAGACGUGGCGACC

4 no match

1788 GUAACCCAAACGUCGAGCAUGAAGGC

40 transposon

LINER1-element

1789 GGAGAUGACAAUGUAGUGAACGCCA

4

0 transposon

LTR

invader4

1790 AUUUAUGUUAGUUACUUGUUCCCCGG

40 ncRNA

1791 AACACAGCCCAACUGCGGACCCAUUAA

4

1 coding gene

1792 ACGGAAUGGAACCGAGCUCUGAGU

40 transposon

1793 GUUCGUUUCCCGGCCGACGCACCA

42 ncRNAtRNA

1794 UGUUCAUCGUUAGACGGCUCGGGCG

42 AT-chX

AT-chX-B

1795 GGUCGCGGGUUCGUUCCCCUCAUGGGC

41 ncRNA

1796 GUCCGCGAGAUUGCCGCAAACUUAGAA

4

0 transposon

1797 CGGCUCCGGGACGGCUGGGAAGGCCC

4 no match

1798 CUGCUUCUGGGUCGGGGUUUCGUACGU

4 no match

1799 CUGGGUAAGUCGGGACCUAAGGCGAGGC

4 no match

1800 CCGAACUUGAGAUCGGCCCUGGACGAC

4

1 coding gene1801 ACAUUCAUAACCGAGCGAUUGUUCAA

4

0 transposon

LTR

GATE

1802 GUCGUGUUGAUCGGUACUUGCUGCGC

40 transposon

LTR

invader4

1803 UCAUCGAGAUAUUAAGGACUGGGGAA

4

0 transposon

LTR

blood

1804 GAUAUUCUUAACCCGACAUCAGAAGUGG

40 transposon

LTR

micropia

1805 CCAAGUGAUAUCGUCGGCGGAUGC

40 no annotation

1806 AGAGAGGCGAUGAAGGACGUGGCAAGC

4 no match

1807 GUCGGUGGUGUAAUGGUUAGCAUAGUU

40 ncRNA

1808 UACAUCGAAAAGCGAGGUGACGUGU

4

1 transposon

LTR

Max

1809 GCCCCUGAUGAAGAAGAGAUGCCCAG

4

0 transposon

LTR

ninja-Dsim-like

1810 UGACAUGAGACGUCUGGCCAUUCAA

4

0 transposon

LTR

3S18

1811 AGCUUCAUCCAAGCGAACUGUGGCC

40 transposon

LINE

R1

1812 GUGCACAUAUACCGAGGCCAACGAUC

4 no match

1813 GAGGGAGACAAACAUGUUCGAGC

40 transposon

Unknown

RR50960

1814 CGCGAGAGGUGAAAUUCUUGGACCGUC

40 ncRNA

1815 ACCCUUGAUAAACGGUUGACUUUCGGU

4

1 transposon

1816 UAGAACCUGAAACCGUAUGCGUAC

4 no match

1817 ACCAAGCGUUGGAUUGUUCACCCAUGC

40 ncRNA

1818 UACAUCGAGAAUCUCACGCCCACAGGC

40 transposon

1819 UAGUGAGGUCUCCGGACGUGAUCAA

4

1 ncRNA

1820 GGAUCCUCAACUGUGAGGGGAUCCUCUAA

4 no match

1821 AACCACUUUCAUGCUUGGGAUUG

40 ncRNA

1822 UUCGCUAGUCCGUCCGAUUCUUGAGUA

40 transposon

LINE

Cr1a

1823 CAAACGAACGAGAGACGGCAACC

4

0 transposon

LINE

I

0 Su(Ste)0 transposon

Su(Ste)
LINE

LTR

Cr1a

HMS-Beagle
rRNA

rRNA

RSP

snRNA
LTR

copia

Su(Ste)LINE

R1-element
AT-chX-B
Su(Ste)

rRNA
LTR

flea
CG8209-RA¦CG8209
rRNA

rRNA

rRNA
CG14034-RB¦CG14034
LINE

X

tRNA
LTR

opus

CG42398-RA¦SteXh:CG42398

tRNA

rRNA
LINE

Rt1b
rRNA

LINE

Doc3
rRNA
rRNA

1824 AUCGAUAUUAUCCCAGCACUACGA

4

0 no annotation

1825 CGUGUAUCAUUUCCUAGCCAUUAUACG

4

0 repeat

1826 UUAUGAAUCGAGUAAAAACUGCAG

4

0 transposon

LTR

diver21827 AACUGAAUGUGGAGACGUCGGCGCGA

4 no match

1828 AGAGCAUAAAGACGACGAAAGUGACC

4

1 transposon

LINE

Doc3

1829 AUCAGGGUUCGAUUCCGGAGAGGGAGC

40 ncRNA

rRNA

1830 GCUCUCUCAGUCGCUUCCCGGGAAAC

40 ncRNA

rRNA

1831 GGAUCGAAGAUGAUCAGAUACCGUCGU

4 no match

1832 CCGGGACCCACCUAAUUUUGAGUUUGC

41833 CGUCGGCGCGAGCCCUGGGAGGAGUU

4 no match

1834 ACAUAUACUGAUAAGACAUUCCCGU
1835 AACGAGAAUAUACACAGGGGCUUALSU-rRNA̲Dme

1 transposon

LINEbaggins

4

1 transposon

LTR

rover

4

0 transposon

LINE

Doc3

1836 ACAAACAUCAAGAAAACCGACGACAC

4

0 transposon

LTR

INE-1

1837 CGAGCGAACCGGGACCAGGCCAGU

4 no match

1838 UACGAAUUCAACGAGGUAUGGC

40 repeat

1839 UCCGAAGACAAGUAUACCGUGGCACACC

4

0 transposon

1840 CUUGAAAUGAUGAUGACUAAGGUCGC

4

0 no annotation

1841 UAAGAGGGACGGCCGGGGGCAUUCGU

4 no match

1842 CCAGACGUAAUACUCCACUACCCGGG

41843 AGCUUCAUCCAAGCGAACUGUGCCCU

41844 AACAAGAUGCAUACGAUGUGGCUCCAGSAR̲DM
LTR

micropia

1 transposon

LTR

HMS-Beagle

1 transposon

LINER1-element

4

0 transposon

DNA

1845 GCCGAGCGCAAAAGUUGUACGAUACC

4

0 transposon

LTR

1846 AGUCCCGCAACGAGCGCAACCCUCGCC

4 no match

1847 CCCAGAAACACAGUGUUUGACGCCAC

4

1 coding gene1848 UACAUCGAGAAUCUCACGCCCACAGG

4

0 transposon

1849 GCGGACCAUGCUAUGCCUGUGGACC

40 coding gene

1850 AUCCCACGGAACACCCGAGCAAUGCCAC

40 transposon

LINE

1851 AACACAAUCGAUCCCGAAAUUUUGA

4

0 transposon

LTR

1852 AAGUACGAGAGACACCCUAACAAACC

4

0 transposon

LTR

opus

1853 CAACCGACUACAAAGAUGCCAUACGA

4

0 transposon

Unknown

RR50960

1854 GGCUCAACUGUGAGGGGAUCCUCAA

4 no match

1855 AGAACGAUGACGAUCCCACGGCU

40 transposon

LTR

ninja-Dsim-like

1856 UUUGAACAUCGAGAAUACUGCACAGC

40 transposon

LINE

Doc

1857 ACACCUGACGUUUCGACCAAUUUAAUU

4

1 transposon

LTR

diver21858 GAAGAAGAGAUGCCCAGUGAGUUUG

4

0 transposon

LTR

ninja-Dsim-like

1859 ACCGAAUUAAUCGCGAGGCUG

40 transposon

LTR

mdg3

1860 CCCGCAAUAUGGCAAUCGCUCGAU

40 coding gene

CG40609-RA¦CG40609

1861 UUCCGAUAACGAACGAGACUCAA

40 ncRNA

rRNA

1862 CGAAAUGAACCGUGCAUCGACAA

40 coding gene1863 UAGACAUUUACUCAUCCGAAGGCAAA

40 transposon

LTR

McClintock

1864 CGGGGUGGGGGACGAGCGCUGGGUU

4 no match

1865 AGUGAGGCCCUCGGAUCGGCACCGCCGGG

4 no match

1866 AUGUCUAUGAGAUGACCGUAAUGA

4

0 transposon

LTR

ninja-Dsim-like

1867 UCCCACGGAACACCCGAGCAAUGCC

40 transposon

LINE

G2

1868 AAAGAGAGUAAUUUUGGCCGUCAC

4

0 transposon

LINE

Cr1a

1869 GCGUAUAACAACUACUUCUCCGUGA

4

1 transposon

LTR

accord1870 GAAGAAGAAAAAGAUGAUAUCGAGUC

40 transposon

DNA

HB

1871 AAACCGAUAUGCUAUCUUGGCUGA

4

0 transposon

LINE

Doc

1872 AGAGCAAUGGAUGACAUAUUGAGAGA

40 transposon

LTR

gypsy41873 CCACAGAGUACGGGGCUUACUGAG

4

1 transposon

LINEbaggins

1874 CCCCGUACGUGAAAUGACCUGUGUG

4 no match

1875 CAAACCGAGAGAAGACUUUCACCCGA41876 GGAUCCUCAACUGUGAGGGGAUUCUCAA

4 no match

1877 UGUUCCAUCGUUAGACGGCUCGGGC
1878 ACUGUCCCUACCUACUAUCCAGCGAAAC

1360
opus
CG18743-RA¦Hsp70Ab

LINE

Doc3
CG17956-RA¦Mst87F
G2
17.6

CG1394-RA¦CG1394

0 coding gene

CG12717-RA¦CG12717

4

1 AT-chX

AT-chX-B

4

2 ncRNA

1879 ACCCUUGAUAAACGUAUGACUUUCGG

40 transposon

LINE

BS

1880 UCAACCUGAGAGUUUGAUCCUGGCU

4 no match

1881 AGAAGCGAUAUCCGAUGCCGAUUGU

4

0 transposon

LTR

diver21882 UGAACCAGAAAACAAGCCUCCUAGA

40 transposonLow̲complexity

F-element

1883 CAUUUAUGUUAGUUACUUGUUCCCCGG

40 ncRNA

1884 ACACGAUUAACGAGUCAAUUUAUA

40 transposon

1885 AGCGUCGGGCGCGGUUAGUACUUA

40 ncRNA

5SrRNA

1886 AAUAGAAGCAGUUUGGGGGCAUUAGU

40 ncRNArRNA1887 GUGCAUGGCCGUUCUUAGUUCGUGGA

40 ncRNArRNA1888 AGAGCGUCCGACGAAUACCCUGGGG

4 no match

1889 ACCUCUAGAGCCACGGCGAAAUGUGCC

4 no match

1890 UGCUCUCGAAUGUAUGCCGAUAU

4 no match

1891 CAGGCACCCGAAAAAGCAAGAGCUCGG

40 transposon

1892 AUCGCAUGGUGAACGAGGCUGAGA

4

0 coding gene1893 AAGACCGUAAACGAAAAGCUAAGA

4

0 transposon

LTR

Idefix1894 CAGACACGAACGAAAUUUUGAUUAUU

40 transposon

LTR

Idefix1895 CGCAAACCCAAAAUGACAAUGCACGACA

4

0 no annotation

1896 GCACAUCCUGAGCUGCGUUUUCCUGA

4

0 no annotation

1897 UGCUCGGGAGACACACGGCGGGUGCUA

4 no match

1898 AUGCAAGGGAACGUGAGCUGGG

40 ncRNA

1899 UAAUUCCGAUAACGAACGAGACUCAAA

40 ncRNA

1900 GCCGAAGUCAUUGUGCGCCAGAGUAA

40 transposon

Simple̲repeat

I

1901 AACGAACGAGACCUUAACCUACUAAAU

4 no match

1902 AAAAUAAUCAAAGACAAUCUCAGCCCGA

4

0 transposonLow̲complexity

F-element

1903 UCAGUGGUAGAAUGCUCGCCUGCCACGC

40 ncRNA

1904 UUAGGGCUGACCCUGGACAGAAGGC

40 transposon

1905 GGAUCCAACUGUGAGGGGAUCCUCAA

4 no match

1906 UCAGCCCUUGCCCGCAAAACCAAAUU

4

0 coding gene

rRNA

rRNA
LINE

LINE

Cr1a

accord2
CG31359-RA¦Hsp70Bb

rRNA
rRNA

tRNA
LINE

G2
CG34102-RA¦BG642163

1907 GGAUCAACUGUGAGGGCAUCCUCAA

4 no match

1908 UUCGAUUUCAAGUACCAGGCGAA

40 repeat1909 UUAUGGCUCUCUCAGUCGCUUCCCGGG

40 ncRNA

1910 CUGACCUGUAUUCGGAUAAUGGAA

4

0 transposon

1911 UUGUUCCCCGGAUAGUUUAGUUACGU

40 ncRNA

1912 GAGCGCACGUGUUAGGACCCGAAAGA

4 no match

1913 AGCAACAACGACGAUUUCAGCAAU

4

1 transposon

1914 CGCAAACCCAAAAUGACAAUGCACG

4

0 no annotation

1915 UAGCAGCACAAGGUCACUACCGAGAUCC

41916 CAGACCGAUAUGCUAUCUUGGCUGA

4

1917 CGGGAUAAGGAUUGGCUCUGAAGAUUG

40 ncRNA

rRNA

1918 ACGAACGAGACUCUGGCAUGCUA

4 no match

1919 GGCAAAUUAGAUCCGUAACUUCGGGA

40 ncRNA

rRNA

1920 GAGAGGCGCCGUAGUUACCACCC

4

0 no annotation

1921 ACCCAGACCGUCAGCUAAGGUCCCAA

4 no match

1922 CGGGACAUGGUGUCGGACCGACUUGGGC

41 transposon

Simple̲repeat

I

1923 GACGAAAUAAACAAGCACUCGAGCAG

40 transposon

Simple̲repeat

I

1924 UGCCGGGGCGAGGAGGAGGACUAGCU

40 Su(Ste)

1925 UUCACCAAGCGUUGGAUUGUUCACCC

40 ncRNA

1926 AACGAGUAAUAUGAGCGCCCAGAGUGA

4

1 transposon

LTR

opus

1927 AAACUGAAUAAACGAAAUGGAUGAC

4

0 transposon

LTR

invader4

1928 UUGGGCCCGAACCCUUCUGGUGUGUU

40 transposon

LINEbaggins

1929 GUACUUCGGGAUAAGGAUUGGCUCU

42 ncRNA

1930 UGCACCGAAAAUAUUUGCGAGGAGA

4

0 repeat1931 UACAUCGAAAAGCGAGUUGACGUAU

40 transposon

1932 UGGUUGCAACGGGUAACGGGGA

40 ncRNA

1933 GGCGCUAAACCAUUCGUAUACGAC

4 no match

1934 UACGUCCGUUGGAUUAUGCCUGA

40 ncRNA

1935 CAGUCUAUGAAAGGUGUGUCGCCCAGC

4

1 transposon

LTR

GATE

1936 CGACAAGAUAGACAGGCGAAACCGCA

4

0 transposon

LTR

micropia1937 ACGAUGCCAGCUAGCAAUUGGGUGUA

40 ncRNA

1938 AGCCGGACGGUGGCCAUGGAAGUCGGAAU

4 no match

1939 AACGAGUAAUAUGAGCGCCCAGAGU

4

1 transposon

1940 UAGGAACGAAAGAGGCGAGGACAACGA

4

0 coding gene1941 GGAUCCCAAGCUGACUCCCGCCGGCCA

40 coding gene1942 CCCGUAAACCGCCAUCAGCAACACACCC

4

0 transposonLow̲complexity

F-element

1943 CGAGAUGACAACCUUGGACCUGACCA

4

0 transposon

LTR

micropia1944 CAAAUUGACACCGUAACUUCGGAAGAAGG

4 no match

1945 ACCGAUAUAAUUCUAACUGAGCACC

40 transposon

LTR

G4

1946 GCGGACGAGGCGUUCCGAGCUGCCCA

40 coding gene1947 CCCGAAAGCAGACGAGUUAACGUACC

4

1 transposonLow̲complexity

1948 AAUAGGGACGGUCGGGGGCAUCA

4 no match

1949 ACCAAUGAGACCCCUACUUUACCAUA

40 transposon

DNA

1950 AACUUAAUAAACGAAAUGGAUGACA

4

1 transposon

LTR

invader4

1951 UCCAAUAUCACCGCGGAGACUGUCG

40 transposon

LINE

Doc4

1952 UGCGUCCCGCAGAUUAGUGAGCCUUGU

40 transposon

LTR

opus

1953 UGCAAUAGAAACGCGCGAUGAGUU

40 transposon

LTR

Dm88

1954 AUGGCUCUCUCAGUCGCUUCCCGC

4

1 ncRNA

1955 ACUGAAUAAACGAAAUGGAUGAC

4

0 transposon

1956 GUGGAAAUGAAGAAAGUACAUCGAAAU

4 no match

1957 AAUCGCUCGAUGUCGUGAGGUGACC

41958 AAAGAGGGACGGCCGGGGGCAUUCGU

4 no match

1959 GCUCGUUCUGGGUAAAUAGAGUUUCU

41960 UGUUUCAUCGUUAGACGGCUCGGGCUUACUAA

4 no match

1961 CGCCGAAUCCCGGGGCCGAGGGAGCGA

4 no match

1962 UGCGAAAUAAUUGCCAGAGUCACCGG

40 transposon

1963 CUGCCCAGUGCUCUGAAUGUCAAAG

40 ncRNA

1964 GAAGACGUUCAUUACGGACAUGGGA

4

0 transposon

LINE

F

1965 UCAGACGAGAUGGCCAACAGAGUG

40 transposon

LINE

F

1966 UCCGAACGUACCACGGUCCCCCAGUG

4

1 transposonLow̲complexity

F-element

1967 UGUUCAUCGUUAGACGGCUCGGGC

42 AT-chX

AT-chX-B

1968 GUCGAGAGAUAUCGGAAGAGUUUU

40 ncRNArRNA

1969 CACCAAGCGUUGGAUUGUUCACCCAUG

40 ncRNArRNA

1970 CAUGGUUGCAACGGGUAACGGGGAAUC

40 ncRNArRNA1971 AAUUCCGAUAACGAACGAGACUCAA

40 ncRNA

1972 AACUGGGAAGGUGGGACUUGAGUUUG

4

0 transposon

1973 CACCGCCCGUCGCUACUACCGAUUG

40 ncRNA

1974 UUUCAUAAUAAGUUCCCCGACGUGCC

40 Su(Ste)

1975 CAAACCGAUAUGCCAUCUUGGCUGA

4

1 transposon

1976 UGUAUACCUAUACAUUACCGCUAA

40 ncRNArRNA

1977 CGCAAACCCAAAAAGACAAUACACG

4

0 repeattrf

1978 UUGUACACACCGCCCGUCGCUACU

40 ncRNArRNA

1979 CUAAGGAGGGAUGAACCGGGCCAG

40 ncRNA

7SLRNA-RA

1980 GGGAAACCUCACCCGGCCCGGACACGGA

4 no match

1981 ACCCUUGAUAAACGGUUGACUUUU

41982 AAAUACAUGCCGACGGGCGCUGACCCC

4 no match

1983 UGUGAAAAGAUCCCGUUUGAAUAUGACC

41984 GCACACAGAGGAAGCAGAUGAGACA

4 no match

1985 CAAGAUAUGACCAAAACAAAGCAACU

4

1 Su(Ste)1986 UUAUAAGGAUGAUGAUACCGACUAA

4

0 no annotation

1987 CAAGCAUUCGACAGAGUCUGGCUCGA

4

0 transposon

LINE

F

1988 GUAACAACGAAGAUGAUUCUGGCCCAG

4

0 transposon

LTR

invader4

1989 GAGAAAAUUAUGAAGCCACUUGGGA

4

0 transposon

LINE

Cr1a

RSP
rRNA
LTR

3S18
rRNA

LINE

BS

0 transposon

LTR

Quasimodo

1 transposon

LINE

Doc

Su(Ste)
rRNA

rRNA
trf
LTR

invader4
rRNA
rRNA

rRNA
LTR

opus
CG40271-RA¦CG40271
CG13340-RA¦CG13340

CG4836-RA¦CG4836
F-element
1360

rRNA
LTR

invader4

0 no annotation
0 ncRNArRNA

LTR

Quasimodo
rRNA

rRNA
LINE

G2
rRNA
Su(Ste)LINEDoc

1 transposon

LINE

Rt1b

0 transposon

DNA

S
Su(Ste)1990 GCCGAACGUAGUCUCUCGAGAGC

40 transposon

1991 GACCAAAUCAACACAUCCGACCAG

40 no annotation

LTR

invader1

1992 ACGAGCGCACGUGUUAGGACCCGAUAG

4 no match

1993 CGACUCAGUAUCCCGUUUAUUUGG

40 transposon

1994 UCCAAGCUGGGCGAGUCCUCCGACGA

40 coding gene

LINE

Rt1b
CG3213-RA¦CG3213

1995 CACCAAGCGUUGGAUUGUUCACCC

40 ncRNArRNA

1996 CCGUCGCUCGAUGAUCGUCCCAGACU

4 no match

1997 AUACCGCCCUAGUUCUAACCAUAA

40 ncRNArRNA

1998 CAGACUCGGAACGCCUCAUUGGU

40 coding gene1999 UCGUCAAAAAGAAGAACGGAACCGACC

40 transposon

2000 UACCCGGAUCCCGCCUCGCUAUUCUA

4

1 coding gene2001 GGCACAAUUACCAGAAGAUGUGGAU

40 transposon

2002 UAAAGGAAUUGACGGAAGGGCACCACC

40 ncRNA

2003 UGCUCUCGAAUGUAUGCCCGAUAUCU

4

2 transposon

2004 UGUCACGCGGGAGACCGGGGUUCAA

40 ncRNA

2005 GUAAUUGGAAUGAGUACACUUUAA

40 ncRNA

2006 AGCAAUAGAAGUAUUGGUAGGCCGA

4

0 transposon

LTR

rooA

2007 AUGCCCGAUGUCCGCGAGAUUGCCGC

40 transposon

LTR

opus

2008 ACAGAGAGAAGACUCACCCGACGAGA

4

0 no annotation2009 AUCGCAUGGAGGCAACCGACAGCCA

40 transposon

LTR

GATE

2010 GACUCUGAAUCCUGCGAUCCGA

40 ncRNA

2011 GCCCUAAUGAUGAUGACCUGCAUU

4

1 coding gene2012 UGCCGAACGUAGUCUCUCGAGAGCGA

4

0 transposon

2013 AGUAUCUAGGACUACCAUGGUUGCAA

40 ncRNA

2014 UAAGACUUAAAGAUGAUGAACCCAU

4

0 transposon

DNA

NOF

2015 UCCGGACAAACACACAAGACCCGAUC

40 transposon

LTR

opus

2016 UACGAUACGGAAGAUGGCCCAAA

4

0 transposon

LINE

F

2017 CACAGAGUACGGGGCUUACUGAAGUCAC

4

1 transposon

LINEbaggins2018 CGGGCGCGGUUAGUACUUAGAUGG

40 ncRNA

2019 CCAGCAUAUACCCGAGAUCAUGGA

4 no match

2020 GACUACGAUAAUAGGUGACUUACUGA

4

0 transposon

LTR

flea

2021 UAUGCUAAAAGUUAUCCUUACCCAGU

4

0 transposon

LTR

opus

2022 UACGACGAGAACGAGAUCAGCGCA

4

1 transposon

LTR

frogger

2023 UCCGAAGACAAGUAUACCGUGGCA

40 transposon

LTR

micropia2024 ACUCGCCGAAUCCCGGGGCCGAGGGGGC

4 no match

2025 AUCCAGUACACGGAGCUACCUGCGUU

40 transposon

LINE

G2

2026 UCCCAUAUUGUCUAGUGGUUAGGAUACC

40 ncRNA

2027 UGCUCUCGAAUAUAUGCCCGAUAU

4

1 transposon

LINER1-element

2028 GAGGUAACGAUGGAGUUUGACGG

40 transposon

LTR

flea

2029 GUGUCAUUGAGAGGCGCCGUAGUUA

4

2 no annotation

2030 UACAACCCGAUCCAUUCUAAAUAAUA

4

1 no annotation

2031 CCAGACGUAAUACUCCACUACCCGA

4

1 transposon

LTR

HMS-Beagle

2032 CAGACCUUCCUAUCACACCCUCCCGA

4

0 transposon

LINE

G

2033 AGGGAGUUUGACUGGGGCGGUACAUC

40 ncRNA

2034 CUGAUGGCAGUGUACUCAGUGGCAGA

40 ncRNA

2035 AUGAGAACGAUGACGAUCCCACGGC

40 transposon2036 CGCGGGCGGCCCGGGUUCGUUUCC

4

1 ncRNA

2037 UACCGGAGGUGGCAUUGCGAACUUUA

4

1 coding gene2038 GCUAGUUCCGAAAAAAUCAUUACCGA

4

0 transposon

LTR

Stalker22039 UGCUCUCGAAUGCUUGCCCGAUAUAC

4

0 transposon

LINER1-element

2040 CAUGUCAUAACAACUAAACACGAAGACCC

40 transposon

LTR

Quasimodo

2041 GGGUAAACCGCUGAACCACUUUCAUGCU

40 ncRNA

2042 ACGAGUAAUAUGAGCGCCCAGGGU

4

1 transposon

LTR

opus

2043 UACGACGAGGACGAGAUCAGCGCGC

42 transposon

LTR

frogger

2044 UUUCCCGAAAUCCGAGUGAAUAUGGCAC

40 no annotation

2045 GACUAGCUGGCCGAGUAUUUGAUGU

40 Su(Ste)2046 UGGGUCGGGGUUUCGUACGUAGC

4 no match

2047 UGCCAGGCCCGUAUAACGUUAAUGA

40 ncRNA

2048 UAAAUCAUGACAAGGCCCAAACAAGA

4

0 transposon

LTR

springer

2049 AAGCCCGUGGACGGUGUGAGGCCGGU

4 no match

2050 ACAACAAACAACACAUACCCGCUGGCC

40 transposon

LTR

GATE

2051 GCCGAACUUGAGACCGCCCCUGGACGAC

40 Su(Ste)

2052 UGAUCGAGCAUAUUCCAUCUUUCGGAA

40 transposon

LTR

Dm88

2053 UAUGAGAUGGCGUACAGGAGGCU

40 transposon

LTR

ninja-Dsim-like2054 CUGCUCCGAAAACAAGGCCCGUCGU

4

1 transposon

LINE

G6

2055 UGCACAGAUAAGGCGGGUCCAAGU

4

0 transposon

LINE

TART-A

2056 GAUACCACCCUGAACGCGCCCGAUCUCGU

4 no match

2057 CACAGAGUACGGGGCUUACUGAAA

4

1 transposon

LINEbaggins

2058 UGACAGACAUCCGAAGAAGCAGGAGC

40 transposon

LTR

blood

2059 CUGUUAAGAAACCACUCGAGCCGCCU

40 transposon

LINE

Doc4

2060 AGAUGUAACGGGGCUCAAGACGU

4 no match

2061 AACGAGAAACUUUAUCCCAGUCGGA

4

1 no annotation

2062 UUAUAAGGAUGAUGAUACCGAUUAAA

40 no annotation

2063 AACUGAAUAAACGAAAUGGAUGACAA

4

1 transposon

LTR

invader42064 UGCUCUCGAAUGUAUGCCCGAUAUAUG

4

1 transposon

LINER1-element

2065 GGCUCUCUCAGUCGCUUCCCGGGAAAC

40 ncRNArRNA

2066 UGGUUCAUCGUUAGACGGCUCGGGC

4

1 AT-chX

AT-chX-B

2067 UGAGACUACAAACGGAUUGCGGCCC

4

1 no annotation

2068 CAAGCGUUGGAUUGUUCACCCAUGCAA

40 ncRNA

2069 ACUCGCCGAAUCCCGGGGCCGAGGGGA

4 no match

2070 GCAUUCGAGACCCAACGACACACAUGA

4

0 transposon

2071 UAGCUAAUUAACACAAUCCCGGGGCGU

40 ncRNA

rRNA

2072 UCUCAUCGUCGUAGAACAGGCCCGA

4

1 Su(Ste)

Su(Ste)CG31359-RA¦Hsp70Bb
LTR

micropiaCG7056-RA¦CG7056

LINE

Cr1a
rRNA

LINE

R1-element
tRNA
rRNA

tRNA
CG40600-RA¦CG40600
LTR

invader1rRNA

5SrRNAtRNArRNA
snoRNA
LTR

ninja-Dsim-liketRNA
CG8322-RA¦ATPCLrRNA

Su(Ste)rRNA

Su(Ste)

rRNA
LINE

Rt1b

2073 UUGUCCGACAAUUCCCGAAGCAAUGCCA

40 transposon

2074 UGAGACUACAAACGGGUUGCGGACC

4

1 no annotation

LTR

diver22075 GCACGCAGAGGAGAGCAGAUGAGAGCA

4 no match

2076 CCCUGAUGAAGAAGAGAUGCCCAGUGA

42077 UACCAACCCAGAAUAUGACCCAGCA

4

0 transposon

LTR

ninja-Dsim-like

0 transposon

LTR

2078 AGCCGUCGAGAGAUAUCGGAAGA

40 ncRNA

McClintock

2079 UCCCACGGAACACCCGAGCAAUGC

40 transposon

2080 UCCGAUAACGAACGAGACUCAAAUA

40 ncRNA

2081 UUCAAGCGACGAGUUAAUGAGUCAGA

4

0 no annotation

2082 GGAUCCUAACUCCUCAACUGUGAGGUCAA

4 no match

2083 CCGCCUGGGGAGUACGGCCGCAAGGUUGA

4 no match

2084 CUUGGUUCAAAGUGUUCGGUCCCAA

40 Su(Ste)2085 UCGCUCGAUGUCGUGAGGUGACCG

40 no annotation

2086 GCUGCGGCUGAUCCCCCGGGCCUUGCACCC

4 no match

2087 AAUUCCAUGAAAAAGACAUUGGCCA

42088 GCGCUUGUGACGGCCCGUGAAAAUCC

4 no match

2089 ACAUCAAUCGCUGAAAAGGCACCGGGA

4

0 transposon

2090 CCCCGGAUAGUUUAGUUACUUAGCCAAU

4

1 ncRNA

2091 AGCGAAACCACAGCCAAGGGAACGGGCU

40 ncRNA

2092 CGAAGCUAAAACGCUGGAAGGCUCG

40 transposon

LTR

opus

2093 UCCGAAGUGACAGACCGAAUCGCAAUU

4

0 transposon

LTR

Quasimodo

2094 AUUCUGGUUGAUCCUGCCAGUAGUU

40 ncRNA

2095 CAAUCAUCCAAGGCUGAGAUCCGG

4

0 transposon

LTR

mdg3

2096 AGGCGUAGUCGAUGGAUAACCAGUUG

4 no match

2097 AGAUCCCCGAAUCCGGAGUGGCGGA

4 no match

2098 AUGGAACACAUAGGGGCUUCGAG

4

0 transposon

LTR

HMS-Beagle

2099 ACCCAGGUGAUUACCACUAUUAACGAA

40 Su(Ste)

2100 ACCGAAAGCAGACGAGGUAACGUACC

4

1 transposonLow̲complexity

F-element

2101 CGACCAAUAAAACGAUUAAGACCAG

4

0 transposon

LTR

McClintock

2102 AAAACCUGAAGAUGAUCCUGAGUCGCG

4

1 transposon

LINE

Helena2103 CCACAGAGUACGGGGCUUACUGAA

4

0 transposon

LINEbaggins2104 AAGGGCUGGGUCGGUCGGGCUGGGGCGC

4 no match

2105 AAUUACAUUAGACGAGACGGCCCUAC

4

0 transposon

LTR

opus

2106 CCAAGGUGAAGAGUCUCUAGUCGAUA

40 ncRNA

2107 CAUUCAUAACCGAGCGACUGUUCAA

4

0 transposon

LTR

GATE

2108 GUGGGUUCGAUUCCUUCCAGCCGCACC

4 no match

2109 UCCGAAGAUGACCAAGUUGGCAACCGC

42 transposon

LTR

gypsy62110 ACUCGCCGAAUCCCGGGGCCUAGGGA

4 no match

2111 AGCUUCAUCCAAGCGAACUGUGCCCAA

4

1 transposon

LINER1-element2112 GAAGAAGAAAUCGAAUUACAGCUCAA

4

0 transposon

LTR

2113 UCCCGGGGCUACGCCUGUCUGAGCGUCGCU

4 no match

2114 UAGACGACUUAAUGGGAACGGGG

4 no match

2115 GCACACAGAGGAGAGCAGAUGAGUGCA

4 no match

2116 UAGUGUCCCGGGACCCACCAAAUUGUAU

4 no match

2117 GGCGAAGGCGACAUACUGGCUCAUUA

4 no match

2118 UAAUUCCGAUAACGAACGAGACUCAA

40 ncRNA

2119 UGCCCUCGAAUGUAUGCCCGAUAUAC

4

1 transposon

LINER1-element

2120 AACUCCAGCAGAGACCGUACCCGAAACC

4 no match

2121 ACCGAUGGCGAAGGCAGCCCCCUGGGAU

4 no match

2122 UACUCGAAGACACCACGGUGAAAGUGG

40 transposon

LTR

ninja-Dsim-like2123 GGUUCGAGUCCUGCAGCUGUCGCC

4 no match

2124 AGGGACGGUCGGGGGCAUCAGUAUUC

4 no match

2125 UGAGGUCUCCGGACGUGAUCACUG

40 ncRNA

2126 ACAACCAUAAACACGAAACAGAAUUGC

40 transposon

Unknown

RR50960

2127 UCAAGCCAAAGAGGGAGCCCGGU

4

1 transposon

LTR

flea

2128 ACCAAUACUUAUGCACACCGCAUU

40 transposon

LTR

Dm88

2129 UGCACAUCGAUAUUUUCUCGACGGA

4

0 transposon

LTR

gypsy32130 GAGAGUGGACGGGAGCGGCGGGGGC

4 no match

2131 CAGAACUUGAAGUCGCCGAGGCAGCCA

40 transposon

LINE

F

2132 GCGAUGGUCAGAAAGUGAUGUUGACGC

4 no match

2133 ACUCCAUCUCAGAGCGGAGAAUUUGGAC

4 no match

2134 AACCAUAAACGAUGCCAGCUAGCA

42135 CCUAAAGUGUAACGGAGGCGCGCGA

4 no match

2136 CGAACUCAAGCGUUCUGCCCUUCGU

40 coding gene

2137 GGUGACGGCCAAAAUUACUCUCUUU

4

0 transposon

2138 UGGAGGCAUCGACGGUGGAGAUCGAGG

40 coding gene2139 AGAGCUAAACUCGAACACGAUUUCGG

40 transposon

LTR

micropia2140 UCGAGAAAAAUUGACGAAUUGCUG

40 transposon

LTR

invader2

2141 CUUGUUCGAGCGAACAGUGGUAUGACG

40 ncRNA

2142 ACCCUGAACGUGCCCGAUCUCGUC

4 no match

2143 CCCGAAAGCAGACGAGGUAGCGUACC

4

0 transposon

2144 CGAACCGAUUAAAAAUUAAAGUGCA

4

0 no annotation

2145 CGGAGUCGGGUUGCUUGGGAAU

4 no match

2146 CUCCGGGGGAAGUAUGGUUGCAAAGCU

40 ncRNA

2147 GAUAACACUUAUAUAUCCCCCUUUGC

4

0 no annotation

2148 ACUCGCCUAAUCCCGGGGCCGAGGGAG

4 no match

2149 GACACGUUCAACCAGAUGGGCCUG

40 Su(Ste)2150 CCAGACGUGAUACUCCACUACCCAGAU

4

0 transposon

2151 CCCAGCUCGGGGAGGUAGUGACGAA

40 ncRNA

2152 ACCGUAUAGACCGUACCCGAAACCGACA

4 no match

2153 GAAACAAUCAGUGGUUUCCCUAAG

4

0 transposon

2154 GAAGCCGGUGAUCGAUAGUUCCUC

40 repeattrf

2155 GACUCAUAUCCGAGGCCCUGUAAU

40 ncRNA

rRNA

rRNA
LINE

G2
rRNA

Su(Ste)0 coding gene

CG41322-RA¦CG41322
LTR

accord
rRNA
rRNA

rRNA

Su(Ste)

rRNA

297

rRNA

rRNA

0 ncRNArRNA
CG5366-RA¦CG5366
LINE

Cr1a
CG1403-RA¦Sep1

rRNA
LINE

F

rRNA

Su(Ste)LTR

HMS-Beagle2265
rRNA

LTR

DM88

2156 GCGUCAGAAAACGUUACGCCGACGC

40 repeat2157 CCCGAAAGCAGAUGAGGUAGCGUACC

4

0 transposon

LINE

trf
FW

2158 CAAGCCAAUCUGGACGUACGGAAUU

40 transposon

LINE

G2

2159 UCGCUCGAUGUCGUGAGGUGACCGC

40 no annotation

2160 GGCUAGCUCAUUUCCCGGGAUGUUG

4

1 transposon

LINE

Fw2

2161 GUAGAGCGUCCGACGAAUACCCUGGGGG

4 no match

2162 UAAACCAUUCGUAGACGACCUGCUU

4 no match

2163 UGGGAACUGGGAAGGUGGGACUUGAGU

40 transposon

LINE

G2

2164 CGGGCUUGAUUGGGAAACAAUAACA

40 ncRNA

2165 GGAUACUAAGCAGGGACGUUGAUGA

40 coding gene2166 UUGGGCCCGAACCCUUCUGGUGUGU

40 transposon

2167 GAUGGCCCUAGCGGGUGUUGACACA

40 ncRNA

2168 GGAGUCUAACACGUGCGCGAGU

4 no match

2169 UUCGAUUCCGGGCUUGCGCACCA

4 no match

2170 GCCCAGAAGACUCACCGGGAAGCA

4

0 transposon

LINE

G2

2171 UGCCGAGAUAUGCUGCGAGUUGCCAAA

4

1 transposon

Simple̲repeatI2172 CAACCAGAGAUCUAGAGGGCCCUAUA

4

2 no annotation

2173 CCCCAGGAGGACAACCAUCUUCUCACC

4

0 no annotation

2174 AUCGAAUGGAGUGCCAGAACCCGUUGG

40 transposon

LINER1-element2175 GUUCGAGUCCUGCAGUUGUCGCCA

4 no match

2176 AUGGCUCUCUCAGCCGCUUCCCGGGA

4

1 ncRNA

2177 AACGAGAAUAUACACAGGGGCU

40 transposon

LINE

Doc3

2178 AACGGCCUCUAGUGCAGAUCUUGGU

4 no match

2179 UGACCACACACUUCUUCCAGGACAUC

4 no match

2180 GUGACUUCAACGCCAAACACUCCUGG

40 transposon

LINE

G2

2181 AACCUGAGAGUUUGAUCCUGGCUC

4 no match

2182 AGCGAGAUAAAGCGAAAACCGGCA

40 transposon

LINE

G6

2183 GCCGAACGUAGUCUCUCGAGAGCGG

4

1 transposon

LTR

invader1

2184 CCGAAUUAAUCGCGAGGCUGCAAGAC

4

0 transposon

LTR

mdg3

2185 GCGUCGGUGGUGUAAUGGUCAGC

40 ncRNA

2186 UGCAGGGAAAAUUUAGCUUUAGCUAAA

4

1 transposon

2187 GGGAACACCGCGUGUUGUUGGCCU

40 ncRNA

2188 AAAACCUGAAGAUGAUCCUGAGUCGCU

4

1 transposon

LINE

Helena2189 ACCACAGAGUACGGGGCUUACUAA

40 transposon

LINEbaggins

2190 ACCCUACUGAUGAUGUGUUGUUG

4 no match

2191 CUGCCGAACGUAGACUGGUCGCGAG

4

0 transposon

LTR

invader1

2192 AAUAGUGAAAUCCUGGUACAGAACCGA

4

0 transposon

LINE

Circe

2193 UGCUCUCGAGUGUAUGCCCGAUAU

4

1 transposon

LINER1-element2194 UCCCCGCGGAAAGACGGAAAGACCCCAU

4 no match

2195 UAUAGCUAAUUAACACAAUCCCGGGG

40 ncRNArRNA

2196 ACUACUACGACGGUGGACUGGUGGA

4

0 coding gene

CG6022-RA¦Cchl

2197 GAGUCCAAGAGAUUUGCUCCCGAGGA

40 coding gene2198 CGGACUCUAAGACGGUGCUGAGA

4

0 transposon

LTR

ninja-Dsim-like

2199 CCCCGUACGUGAAAUGACCUGUGUGG

4 no match

2200 UCGGCCCGAACCCUUCUGGUGUGAU

4

1 transposon

LINEbaggins2201 AUGACAUACAGUACCAUGAAGGUGA

4

0 transposon

LTR

McClintock

2202 GCGAGGCAUGUCUGUCUUUUUCGGC

40 transposon

LTR

invader1

2203 UAACCGUCAUUCCAGCGCAAGUUGCCC

41 transposon

LTR

ninja-Dsim-like

2204 GGAUCCUCAACUGUGAGGGGCAA

4 no match

2205 UGAUAGUUCAAAGACCCCAUAUG

4

0 transposon

LINE

Cr1a

2206 GCAUUCGAGACCCAACGGCACGUGAA

4

1 transposon

LINE

INE-1

2207 UACGGCCUGGGCUACACACGUGCUAC

4 no match

2208 CCGGCUAGCUCAGUCGGUAGAGCAUGA

40 ncRNA

tRNA

2209 CGUGGGUGGUGGUGCAUGGCCGUU

42 ncRNA

rRNA

2210 AACCGAUAUGGUUGGACCACAAUCUUU

40 ncRNA

7SLRNA-RA

2211 AAAUCUCGCGCCGGGCCGUACCCAUA

4 no match

2212 AUCGAGAGUAUGCUACACACCUGGGG

42213 UGCAAGGUUACCCCAGGUGCUGUGCCU

4 no match

2214 CCGGUGCGGAGUGCCCUUCGUCCUGGGA

4 no match

2215 GCGCGAACCAUAACGAGAGUAGUGA
2216 AACUGAACAAACGAAAUGGAUGACArRNA
CG12717-RA¦CG12717
LINE

baggins
rRNA

rRNA

tRNA
LTR

ninja-Dsim-like
5SrRNA

CG31359-RA¦Hsp70Bb

0 transposon

LINE

F

4

0 transposon

LTR

Dm88

4

1 transposon

LTR

invader42217 ACUAAUCGCGAAAUCGAGCGGCUGU

4

1 transposon

LINE

Doc

2218 AUGACAGUUCACGAUUGAUUCCCC

4

0 transposon

LTR

opus

2219 CUUUCGCAGAGAGAUAUGGUAGAU

40 ncRNA

2220 CGGGCUCGCUCAAAAUCGAUGUGC

40 coding gene2221 UCCUUCUGAAGAGUUGUUGGCACG

4

0 transposon

LTR

GATE

2222 UACAAGCAAGACCACCACACCCGACGC

40 transposon

LTR

gypsy122223 UUCCUCGGGAUCAAGGGCAACGAG

40 coding gene

CG40635-RA¦CG40635

2224 ACACGGGAAACCUCACCCGGCCCGGAC

4 no match

2225 AGCCUGAGAGGUGAUGCGUAGCC

4 no match

2226 GAACUGAGAACCGUUGGACCAUGU

40 coding gene

CG17376-RA¦CG17376

2227 ACUCUCCGAAUCCCGGGGCCGAGGGAG

4 no match

2228 ACCGAGAGGUCCGGGUAAACCGCUGAA

40 ncRNA

2229 UUCGAGAACAAACGAUACUGUUCGGCCG

40 transposon

LINE

G2

2230 CGUUCAAGGAUCACGCGAGCUACGCCAUA

4

2 transposon

LINE

Rt1b

2231 AGAAGCGAUAUCCGAUGCCGAUU

40 transposon

LTR

diver22232 UGCCGAGAUAUGCUGCGAGUUGCCAA

4

0 transposon

Simple̲repeat

I

2233 UUCCGAGGAAUCUGGGUUCAAGAUUU

4 no match

2234 CCCUGAUGGAAGACCGAAACAGUUCUGA

40 ncRNA

2235 ACCCUGAACAAUACACUACACCGCAGC

40 transposon

LTR

mdg3

2236 CGGACAUACUAGUUGCAAGUGGCGCGA

4

1 transposon

LINE

TART

2237 UUCAACCGGACGGGCCUAGAGUUAU

4

0 coding gene

CG40635-RA¦CG40635

2238 UGUUUCGUCGUUAGACGGCUCGGGC

4

1 AT-chX

AT-chX-B

rRNA
CG9660-RA¦toc

rRNA

rRNA

2239 UUCCGAGGAACCAAUUGAUCCAGCUG

40 Su(Ste)

2240 CAAACAGUACACCUACUAGCCCAUGU

40 transposon

LINE

Su(Ste)baggins2241 CAAUUCUGCAACUCGAGCGACGCCGU

40 transposon

LTR

Quasimodo

2242 AUCAUAUUAUCCCAGCACUACGAA

4 no match

2243 AAUUCGGCCCGAACCCUUCUGGUG

40 transposon

LINEbaggins

2244 AACCGAUAUGGUUGGACCACAAUCUUUU

40 ncRNA

2245 ACCGAAAAUAUAAACGAACACUUAGA

40 transposon

2246 GAGCGGCCCGUCCCCCUCCGAGA

4 no match

2247 GUGUUUCAUCGUUAGACGGCUCGGGC

4

1 AT-chX

AT-chX-B

2248 GAGAACGACGAGGUCCUGGUUGCC

40 coding gene

CG8415-RA¦RpS23

2249 GGUGCAAGCUCCGAAUUGAAGCCCCAGU

4 no match

2250 CCCUAGCUCAUUUCCCGGGAUGUUUAU

42 transposon

2251 UACCAUAGGGAUAACUGGCUUGUGGC

40 ncRNA

rRNA

2252 UAGAGAGUGAUGCCGAGUAUAAAAGU

4

0 repeattrf

2253 GUCAUGCGAGGCGAACCGGGUGAAC

4 no match

2254 GAUUAACGAGAUUCCUACUGUCC

40 ncRNA

rRNA

2255 GGAGAGGUGGCAGAGUGGUCGAAUGUA

4 no match

2256 GCAUACGAGACCCAACGGCACGUGACA

42257 GUAUCCUCAACUGUGAGGGGAUCCUCAA

4 no match

2258 AUCUGUGGGAUUAUGACUGAAC

4 no match

2259 CUGUAACUCGGGUCACUGUAACUCGGG

4 no match

2260 CCCGAAGAAACCUAAACCAAACA
2261 UAAAGAGACAAUUGACGGUACCGC

7SLRNA-RA
UnknownLINE

RR50960

baggins

1 transposon

LINE

INE-1

4

1 transposon

LTR

opus

4

0 transposon

LTR

Dm88

2262 GACUUGAUCUCGGUGUUCAGUAC

4

0 repeat2263 GGUUCCAUGGUGUAAUGGUUAGCA

40 ncRNA

2264 UGUGCUAGAAGACGAUUUUAGGCCCGA

4

0 transposon

DNA2265 AUCGGGGACUCGCCAAUCUCUUGCU

40 transposon

LTR

springer

2266 CCCAAAAGCAGACGAGGUAACGUACC

4

1 transposonLow̲complexity

F-element

2267 CAGGAGUUGACGACACCGGUGCGA

4

1 transposon

LTR

diver

2268 UGUUUCAUCGUUAGACGGCUCGGGCAU

4

2 AT-chX

2269 AGAGCGAACCCGGGGAACUGAAACA

4 no match

2270 UUCCGGAGAGGGAGCCUGAGAAACGG

40 ncRNA

2271 AAUCAUCCUAAUGAGUCGAACGCGU

30 transposon

LTR

2272 CAAGAUAUGACCAAAACAAAGACACU

3

0 transposon

DNA

2273 AGUACUGGGAUGACGUCAUAUUUUG

30 transposon

LTR

2274 GCACACAGAGGAGAGCAGAUAGAGCA

3 no match

2275 GGAUCCUCAACUGUGAGGGGACCUCAA

3 no match

2276 CAGGGUUCGAUUCCGGAGAGGGAGC

30 ncRNArRNA

2277 UAACUUCGGGAUAAGGAUUGGCUCUGA

30 ncRNArRNA

2278 CGCUGGCAAGCAACUGGAAGACGGAC

3

1 repeat2279 GAGGCAAUCACCGAGAGCAUCAACGGUC

30 transposon

2280 UUGGGUUCCGGGGGGAGUAUGGUUGC

32 ncRNA

rRNA

2281 AAACCAAAGCUUUUGGGCUCCGGGGGGA

3

1 ncRNA

rRNA

2282 CGUCGAGAGAUAUCGGAAGAGUU

30 ncRNA

rRNA

2283 UGUAUCAUCGUUAGACGGCUCGGC

32 AT-chX

2284 AAACUGAAUAAACGAAAUGGAUGACA

3

0 transposon

LTR

invader42285 GCGAAAAACAAUACAGACCGCCUUGGCAA

3

1 transposon

LINE

Circe

2286 CAAAGCAAUAUUGAAACCAUGAAGAGU

30 transposon

LINE

Fw3

2287 CCGAUAACGAACGAGACUCUGGC

3 no match

2288 AGGGCAUAAAGACGACGAAAGUGACA

3

1 transposon

LINE

Doc3

2289 AAGCUAACUACAGACGGGGUGA

3

0 transposon

LINE

R1

2290 GCAUGGCCGUUCUUAGUUCGUGGA

30 ncRNA

2291 GCAUUCAUAACGAGGUUGCGCAUUU

3

1 transposon

LINE

Doc4

2292 GCACACAGAGGAGAGCAGGUGAGAGCA

3 no match

2293 CUCAGUCAAAUGGCAUCGUGGAGA

3

0 transposon

LINE

Doc4

2294 UGCUGACGGGGCCCGAAAACACGA

3

0 transposon

LTR

opus

2295 GAAACCGGAACAUGUGGCUGCGAGU

3

1 transposonLINEaccord2

2296 CUUGUUCCCCGGAUAGUUUAGUUACGU

30 ncRNA

2297 UGUCCCAAGGCCAGCUCAGUGCGGACA

30 ncRNA

2298 CCCCAUCCAAAGCCACAGUAUAGCGCC

30 transposon

2299 CAUGGUUGCAACGGGUAACGGGGA

30 ncRNA

2300 GGACAAACAAGACGACACCACGA

3

0 no annotation

2301 AUCCCCAGGACUGGAUCGCAUCGA

3

0 transposon

LINE

G2

2302 GCAUUCAAUACACCGAGAUGGCCCAAU

3

0 transposon

LINE

Quasimodo

2303 ACUCGCCGAAUCCCGGGGCCAGGGA

3 no match

2304 CCGUACCUGUUGGUUUGUCCCAUU

30 ncRNA

2305 AUUGAUAUCACGGGCAACGUCGA

3

0 transposon

LTR

gypsy62306 UACAUCGAAAAGCGAGUUGACGU

30 transposon

LTR

Max

2307 GACGAACUUAUAAGUGAAUUGUUGGC

30 transposon

LINE

Cr1a

2308 CAAUCUCAGAUAAAAACCCGAACGUG

30 transposon

LTR

invader3

2309 AGGACGAGGCCGAGGCAGGAGCA

30 coding gene

CG3788-RA¦CG3788

2310 UUACGACGCGAGAGGUGAAAUUCU

30 ncRNA

rRNA

2311 AUGGUUGCAACGGGUAACGGGG

30 ncRNA

rRNA

2312 GUUUGACUGGGGCGGUACAUCUCUC

30 ncRNA

2313 GAUGUCUAAGCCCAAACUGGUGUCC

30 transposon

LINE

F

2314 AUAGAAGAAAUUGCCGUUACAACUGU

30 transposon

LTR

G4

2315 CAGGACCAUAUCCGAAGACGCGGCGC

30 transposon

LINE

Rt1b

2316 UCAAGAAUAACAGGACCAUCCAAG

3

0 no annotation

2317 GCCCGUUAUAUUUGGCUCGUCAAACGU

3

1 transposon

LTR

diver22318 UGAGAACGAUGACGAUCCCACGGCU

30 transposon

LTR

ninja-Dsim-like

2319 CCAGAUGAUAUUCCGAAAACAGCCUU

3

1 transposon

LINE

Doc4

2320 UUCAACUUUAACCCAAGAGACGUGA

3

0 transposonDNAtransib4

2321 UAAUCAAGUAACCGAGAAACGUGUU

30 transposon

LTR

invader2

LSU-rRNA̲Dme
tRNA
1360

AT-chX-B
rRNA
gypsy
1360
Max

trf
LINE

Rt1b

AT-chX-B

rRNA

rRNA
rRNA
LTR

GATE
rRNA

rRNA

rRNA

2322 GGGGAACUGAGGAGCGCAUUUCA

3

0 transposon

LTR

flea

2323 AUCGAAGUUAUCGACAAUCAGUCAUC

3

0 transposon

LTR

flea

2324 AAGACGGCCACUGAUUCGGAGA

3

0 coding gene2325 GUGGCUUUGAGAGGCGCCGUAGUUAU

3

1 no annotation

2326 AGAGGGCGUGAAACCGUUAAGAGG

3 no match

2327 AAAUAAUCGGAUGAGACCUUGGAGGAC

3

1 ncRNA

rRNA

2328 UGACGCCUUGCGUGUUACGGUUGUUU

30 ncRNA

rRNA

2329 CCCGCACGAAUGGCGUAACGAUUUCUC

3 no match

2330 UACGAGAGGACCGGGAUGGACGCACCC

3 no match

2331 AAGAGGGACGGCCGGGGCAUUCGU

3 no match

2332 GACUCUUAGCGGUGGAUCACUCGGCUC

32 ncRNA

rRNA

2333 ACUCCGGAUGUGCUGACCCCUGCGAUUU

3 no match

2334 CUGAAGUUGAGUGGUGAAUCCGU

30 coding gene2335 UGCUGUUUACUUCGAGGACAAGGUGA

3

0 transposon

2336 CAGCCAAGAGUUCCCGUGGUAGGCAGU

30 ncRNA

7SLRNA-RA

2337 UUGGGAACACCGCGUGCUGUUGGCCU

3

1 ncRNA

5SrRNA

2338 AGUUAACGAUCACAAAGGCAUCACGC

3

0 no annotation

2339 GCCGCGGAGCCUCGGUUGGCCUCGGA

3 no match

2340 AGAUGUCCUGGGCUGCACGCGCGC

32341 ACUCGCCGAAUCCCGGGCCGAGGGAGC

3 no match

2342 CAGCUGCCAUACUGCGAUCCACUGA
2343 GUUCGAUUCCGGAGAGGGAGCCUGAG
2344 ACCUCAGAUCAGACGUGGCGACCCGCU

3 no match

2345 GGAUCCUCAUCUGUGAGGCUCAA

3 no match

2346 CAAGAUAUGACCAAAACAAAGACACC

32347 UCUCAUCGUCGUAGAACAGCCCGA

3 no match

2348 AACUGUGAGGAUCCUCAA

32349 AGCUAUGGUGAUGGUGAUGGUGCA

3 no match

2350 CGAGAGGUCCGGGUAAACCGCUGAA

32351 UCAGCACCAUGGACGAGAUCUCCUCCGGG

3 no match

2352 AAUAGAAGCAGUUUGGGGGCAUUAGUA
2353 ACCAAGCGUUGGAUUGUUCACCCACU

CG3061-RA¦CG3061

CG41545-RA¦CG41545
LTR

flea

0 ncRNArRNA

30 ncRNArRNA

30 ncRNArRNA

1 transposon

DNA

1360

1 no annotation
0 ncRNArRNA

30 ncRNArRNA

32 ncRNA

2354 GACAGCGAUACCUGGGGCCUUGU

32 transposon

2355 GCAAGUCUGGUGCCAGCAGCCGCGGUA

30 ncRNA

2356 UCUGUCUCCGGGCGGAGGUGGGCGGC

3 no match

2357 CCAUCCUAAAACUGAUAGACAGCUGG

3

1 Su(Ste)

2358 GCCUUACGAAACGAAACCCGAUCAA

3

0 transposon

2359 GACUCAUAUCCGAGGCCCUGUAAUU

30 ncRNA

2360 ACUCACAAUCUCAGAUAAAAACCCGA

3

1 transposon

2361 CGGGUAGCUCAGUCGGUAGAGCAUUG

30 ncRNA

2362 AAAACCUGAAGAUGAUCCUGAUUCG

3

1 transposon

LINE

Helena2363 CCAGAUGAUAUUCCGAAAACAGCCGUC

30 transposon

LINE

Doc4

2364 AGUGAGGUCUCCGGACGUGAUCAC

30 ncRNA

2365 AAGAGUGGCGCAGUGGAAGCGUGCU

3

1 ncRNA

2366 UUCGAUAACAACGUCAACCUGAGGCAU

30 transposon

LTR

diver22367 AGCGUCGAACGAUUUCUGCCCACCU

30 transposon

LTR

Quasimodo

2368 GCGGCGAUGAGAAGCUGACCACAGCCGGC

30 coding gene2369 AGCUAGACUAUGUAUCCCCGGGUAA

30 transposon

LINE

Doc

2370 ACCCUUAACGCGCCCGAUCUCGU

3 no match

2371 AGGAUCCUCAACUGUGAGGGGAUCCUCAA

3 no match

2372 ACGGAUGCCGUGUAUCGUUUGACCUU

3 no match

2373 GAAGAAGAGAUGCCCAGUGAGUU

30 transposon

LTR

ninja-Dsim-like2374 AGCUGCCAUACUGCGAUCCACUGAAA

3

1 ncRNArRNA

2375 UACGAAUUCAACGAGGUAUGGCAUU

30 repeat

SAR̲DM

2376 AAGGCGCUUGAGAGAACUCGGGU

3 no match

2377 AUGCCUUAGACAGUCACAGUGCCCUCAC

30 coding gene

CG31682-RA¦CG31682

2378 AAACUGUGAGGGGAUCCUCAA

3 no match

2379 UACCCUGGUAGUCCACGCCGUAAA

3 no match

2380 CUGGGGGAUCUUUGAGUGAUGAAG

3

1 transposon

2381 AGCAGCUACUGGAGACCGGCGUCC

30 coding gene

CG18568-RA¦CG18568

2382 UAAUAGAAGCAGUUUGGGGGCAUUAGU

30 ncRNArRNA

2383 AAACGAGAACUUUGAAGGCCGAA

3 no match

2384 UCCAACGAGAGAGCGGAGAGCCAGC

3

0 transposon

Unknown

RR50960

2385 CAACAAAGCACCAGGACAUGACGUCA

30 transposon

LINE

X

2386 AGGCGAGAAAGCAGCGUUCUGGA

30 coding gene

2387 UCAACCUGAGAGUUUGAUCCUGGCUCA

3 no match

2388 UCUCACCUCGUAGAACAAGCCCGA

3

2 no annotation

2389 UGGUUGCAACGGGUAACGGGGAAUC

30 ncRNA

2390 UAAACCUGAAGAGAGCCCUGAAUCGU

30 transposon

2391 UACCGCCCUAGUUCUAACCAUAA

30 ncRNA

2392 AGCCCCUGGACUAGAUGGUAUUCC

3

0 transposon

2393 CGUUAUAUUGGUUGAACUCUAGAU

30 ncRNA

2394 CUUGACCAGCAUUUUCUUACAAUAUUGU

30 coding gene2395 UAGACAGAGAUAUUACCAGAAGCCACAA

3

0 transposon

2396 UUGAAUCGUGUCCCAAUAUCUCCUGUGA

30 coding gene2397 UUUGUAAGGACCUGAGAACUUGUA

30 transposon

2398 ACUCGAAGGACGCGAAAAGGUAGCCACU

3

1 coding gene

2399 AUCUGUGGGAUUAUGACUGAACG

3 no match

2400 UAGGCAAACUAGGUGGGUCCCGGGA

30 transposon

LINEbaggins2401 UACGAGAGACACCCUAACAAACCAAA

3

0 transposon

LTR

opus

2402 CGGCUUGGAAGGCUGGCGGGGAAGGUGGC

3 no match

2403 UCGACCAAUAAAACGAUUAAGACCAGC

3

0 transposon

LTR

McClintock

2404 AAACGAGUGUUAUUGUGGGCCGGU

30 ncRNA

rRNA
LINE

F
rRNA
Su(Ste)

LTR

gypsy
rRNA

LTR

invader3
tRNA

rRNA
tRNA

CG4546-RA¦CG4546

LINE

baggins

CG4918-RA¦RpLP2

rRNA
LINE

Rt1b
rRNA

LINE

F
rRNA
CG10859-RA¦CG10859

LTR

gypsy4CG42398-RA¦SteXh:CG42398

LINE

Doc4
CG8137-RA¦Spn2

rRNA

2405 AUAGAAAGUAAGCCCCAUGUAAUCGAA

3

0 transposon2406 UCCGUGGGUGGUGGUGCAUGGCCGUUC

32 ncRNA

LTR

micropia2407 AAACCCAAGGCACCCCCAAGGCCCCG

3 no match

2408 GGGCGGAGGCCGGCGGCGGGUGGGU

3 no match

2409 GAUCGAGGCCCAGCCCGUGGACGGUGU

3 no match

2410 CAACUGUGAGGGGAUCCUAUGA

3 no match

2411 CAGAGAUCUAGAGGGCCCAAGAAA

30 no annotation

2412 UGCCAGCGAGGAGGAGGACUA

32 coding gene2413 AGCAAUUCUAGAGAACGAAAGCGA

3

0 transposon

2414 ACUCGCCGAAUCCCGGGGCCGAGGGAGUC

3 no match

2415 GAGCGCGACGGCAAGCCCUAUUGCAAA

30 coding gene

CG31624-RA¦CG31624

2416 GAAGCUUGACGACGAAGUAAAGGUGGC

30 coding gene

CG17603-RA¦Taf1

2417 AGGAUCUUCAACUGUGAGGGGGAUCCUCAA

3 no match

2418 UAUAGCGACAACCAGAGUUCCCAGU

3

0 transposon

LTR

DM88

2419 CCAGAUAAAAAUAAGAUUGUCAUACGA

3

0 transposon

LTR

Idefix2420 UGGAGCCGGGCGUGGAAUGCGAGUGCCU

3 no match

2421 UGGGUUCCGGGGGGGAGUAUGGUUGC

3 no match

2422 ACCAGAACGAGAAGGUAGCCUAGA

30 transposon

LTR

Idefix2423 GGUCCUCAACUGUGAGGGGAUCCUCAA

3 no match

2424 UCCCGUAAACCGCCAUCAGCAACACC

3

1 transposonLow̲complexity

F-element

2425 UUCCGAUAACGAACGAGACUCAAAUA

30 ncRNA

2426 UAUUCCGAUAAACGCCCAUUACACU

3

0 transposon

LTR

gypsy32427 UACGACGAGAACGAAAUCAGCGCGA

3

1 transposon

LTR

frogger

2428 AACUGAAUAAACGAAAUCGAUGACA

3

1 transposon

LTR

invader42429 UCCUCAACUGUGAGGGAUCCUCAA

3 no match

2430 UCCCGUAAACCGCCACCAGCAACACAU

3

1 transposon

LINE

F

2431 CGCAUGAUUAAGAUGGAUGUCAUU

3

0 transposon

LINE

Circe

2432 CACAGAGUACGGGGCUUACUAAAGUCAU

3

1 transposon

LINEbaggins

2433 UGCAACUCGAGCGACGCCGUCUCUGCCA

30 transposon

LTR

Quasimodo

2434 UAAGAUAUGCUAGCAGACUGGAGA

3

1 transposon

LINE

G2

2435 ACAUUCAGUGGCAAGGUUAACCGA

3 no match

2436 UGGAGUUCGAGGAGUGGCCCGUUUA

3 no match

2437 CGAGAUGACAACCUUGGACCUGACC

3

0 transposon

LTR

micropia2438 ACUACUUCCAUCCUAAAACUGAUAGAC

3

0 Su(Ste)

2439 ACGAGUAAUAUGAGCGCCCAGAGUGAUA

3

0 transposon

LTR

opus

2440 CUCAUUCCGAACAUACACCGACAAA

30 transposon

LINE

Doc

2441 GUAGGGAGUUUGACUGGGGCGGUAC

30 ncRNA

2442 ACGGAAGACCCGCUCCCCGGCGCCGCU

3 no match

2443 CACGAUGAUCGAUGACGAGCUACGAAG

3

0 transposon

LTR

ninja-Dsim-like2444 AUCCCACGGAACACCCGAGCAAUGCCA

30 transposon

LINE

G2

2445 CUCGCCGAAUCCCGGGGGCCGAGGGAGC

3 no match

2446 UUGUCGCCGUCGUUCACCACCUGG

3 no match

2447 GGCUUUGUGAGGCGCCGUAGUUUU

3 no match

2448 CUGCUUCUGGGUCGGGGUUUCAUACGU

3 no match

2449 UGCUCUCGAAUGUAUGCCCGAAA

3

1 transposon

LINER1-element2450 AUUGAAGGAAUCCCAGCACCAGCGU

30 transposon

LTR

flea

2451 CCCCAUCCAAAGCCACAGUACAGCGCAC

3

0 transposon

LTR

GATE

2452 AUGUCGGCUCUUCCUAUCAUUGUGAA

30 ncRNA

2453 AAAGGAGUCUAACACGUGCGCGAGU

3 no match

2454 AACGAACGAGACUCUGGCAUGCUAAC

3 no match

2455 AGAGAUCAGAGAGUGGAUUCGAG

3

0 transposon

LTR

Quasimodo

2456 GCGUUCAACACCGCCAGAUGGCCCGU

3

1 transposon

LINE

F

2457 UCCGAAGACAACGAGGAGCAGAGC

30 transposon

LTR

2458 UGAUACCGAGAAUGACAAUGGCUG

30 transposon

LTR

2459 ACGAGUGUUAUUGUGGGCCGGUACUAU

30 ncRNA

2460 CCAACAGAUACCAGAUAAGAAUAAGAU

3

0 transposon

LTR

Idefix2461 UACAUAAGAAAGCCGACAUCCCGACA

30 transposon

LTR

GATE

2462 UUUGCAAAAAACGAGAGCGAUAGAGC

3 no match

2463 ACUCCGGAUGUGCUGACCCCUGC

3 no match

2464 ACUGGGAAGGUGGGACUUGAGUUU

30 transposon

LINE

G2

2465 CGUACUCUAAUAGUUCUAAUGCCCACC

3

0 transposon

LTR

diver22466 UGCUCCGAAAACAAGGCCCGUCGCU

30 transposon

LINE

G6

2467 GCACACAGAGGGAGCAGAUGAGAGCA

3 no match

2468 UAAUACAUAUCGAUCAUUACGGCCCAG

3

0 transposon

LTR

flea

2469 AAUAGAACCUGAAACCGUAUGCGUAC

3 no match

2470 UCGAGGGCAUCCAGCUGGCUUUGA

3

0 transposon

LINE

G

2471 ACGUGGGCCUCUCCACCCUAUAGU

3 no match

2472 UGCUUCAUCGUUAGACGGCUCGGGCG

3

1 AT-chX

2473 CCGAUUGUCUCCAGGCCACAUAC

3

0 transposon

2474 CCUCGUGUCCACACUGAUAACUCCG

3

0 no annotation

2475 AAUACAUGCCGACGGGCGCUGACCCCCC

3 no match

2476 AUGCCCGAUGUCCGCGAGAUUGCCGU

32477 GACCGGCUCCGGGACGGCUGGGAAGGCCC

3 no match

2478 UACAUGCCGACGGGCGCUGACCCCC

3 no match

2479 CAGUCGCGAAAUUGGUAUCCCCG

32480 CGGCCUGGUGGUUCUAGCGAGGAGCC

3 no match

2481 AACAGGAGAAGGUGGCUUUGAGA

32482 AACUUGAGACCCAACAACGCAACCGA

3 no match

2483 UUCCCCAUGAACGAGGAAUUCCCAGU

3 no match

2484 UACGACGAGAAUGAGAUCAGCGCGA

3

0 transposon

2485 GGGAAACCAAAGCUUUUGGGCUCCGGGG

30 ncRNA

2486 AAGACAAUCUGGGAGGUGCCCG

3 no match

2487 UGAGACUACAAACGGAUUGCGUACC

3

rRNA

CG7776-RA¦E(Pc)
LTR

flea

rRNA

Su(Ste)

rRNA

rRNA

1731
gypsy3rRNA

AT-chX-B
LINE

accord2

1 transposon

LTR

opus

0 transposon

LTR

diver2LTR

frogger

1 no annotation

1 no annotationrRNA2488 UCGACCUGUAUUCAGAAAUGUAAA

30 repeat2489 AGCGAGUGGACUGGGCCAGGCAUGC

30 transposon

LTR

ninja-Dsim-like

2490 AUUGACGUUAUGCUACUCUCAGAG

3

0 transposon

LINE

Doc3

2491 AUACAUGCCGACGGGCGCUGACCCCC

3 no match

2492 AUAUCGACGGCGGUGUUUGGCACCU

3 no match

2493 GAGCGCACGUGUUAGGACCCGAAC

3 no match

2494 GAUCGAAGAUGAUCAGAUACCGUCGU

3 no match

2495 CCGAACUUGAGACCCCAACCGCUCCUC

3

1 no annotation

2496 UAAACCGUCAUUCCAGCGCAAGUUGCC

30 transposon

LTR

ninja-Dsim-like2497 AUCCUCAA

30 transposon

LTR

2498 CGGUAUGUACUAUCCGGCUGAGCCU

3 no match

2499 AGCGCCGCGGAGCCUCGGUUGGCCUCGGAU

3 no match

2500 CAUGACAGUUCACGAUUGAUUCCCCA

3

0 transposon

LTR

opus

2501 GAAGAGAUAACUGAGGCGCUAAAG

3

0 transposonLow̲complexity

F-element

2502 CGCAUCUUAAAGUAAAUGGCCUACGC

30 transposon

LINE

Cr1a

2503 CUGACAAUGACAGGGCAAUUUAUA

30 transposon

LTR

2504 GAACUGGCAACAUGUCGAGCUCCCAGA

3 no match

2505 UGAUCUCGGAAGCUAAGCAGGGUCGGG

3 no match

2506 AUACCUAUACAUUACCGCUAAAGU

30 ncRNA

2507 GCAACUAGCGACGCUGCUAUACCC

30 coding gene2508 GCCCGAAAACACGAGAGCCGAGCGCUGGU

30 transposon2509 GGCUUUGAGAGGCGCCGUAGUUAC

3

0 no annotation

2510 AGAGGCGACAUUCAUAACCGAGCGA

3

0 transposon

2511 ACACUGGAUCCUCAA

3

1 coding gene

CG9886-RA¦CG9886

2512 ACCGAUCCAGACGAGGGACGAUGAC

3

0 coding gene

CG2750-RA¦CG2750

2513 AGCCGCGUGCCCACCGACUACGUGCAGG

3

1 repeat2514 CCCGAUAUUAAUCUAUCCUGAUUUU

3

0 transposon

LTR

Idefix2515 GACACAGAAAAGAAGACUCCGAAGGC

30 transposon

LINE

Rt1b

2516 UAGUUUACCGGAACGGUCUGGAAUGGCA

3 no match

2517 UCCGCAUGUGAAUGUUGGCCCCAGA

3

0 no annotation

2518 UGUUUCAUCGCUAGACGGCUCGGGCGG

3

1 AT-chX

2519 UCGGGAUAAGGAUUGGCUCUAAGGGUC

3 no match

2520 CAGAACUUGAAGUCGCCGAGGCAG

3

0 transposon

LINE

F

2521 UACGUAAACAACCCCAGGCUGACUCCGG

3

0 transposon

LTR

Max

2522 CGAACGCUUAAUGAACACGAGGUCA

30 transposon

LTR

McClintock

2523 GCAUUCGAGACCCAACGGCACGUG

30 transposon

LINE

INE-1

2524 UCGAGGAUGAACCCGGGGUGGAGCGCGA

3

1 coding gene

2525 AUCCUCAACUGUGAGGGGGAUCCUCAA

3 no match

2526 ACACUGAACGCGCCCGAUCUCGUC

3 no match

2527 CCAACUAUAACAAGCUGAUAUCCGA

3

0 transposon

LINE

G2

2528 CACGCAGUUACCGACCGUUGUGUCAUU

3

0 transposon

LINE

Quasimodo

2529 GAAACUCCAUAAAAAUCAUUGCCGC

30 transposon

LTR

accord2530 ACUGAAGUGGAGAAGGGUUUCGU

30 ncRNA

2531 CACAGAGUACGGGGCUUACUAA

30 transposon

2532 GCCGAACUUGAGACCGCCCCUGGACGAA

3

1 Su(Ste)

Su(Ste)2533 UCCCCGCGGAAAGACGGAAAGACCCAUG

3 no match

2534 UCGACAGUUCCUCGGGCUUGUUCUAC

3

0 Su(Ste)

Su(Ste)2535 ACGAGCGCACGCGUUAGGACCCGAAA

3 no match

2536 AUAAACCUGGAUAUAGAUGAGCCGA

3

2 transposon

2537 CCAUCCUAAAACUGAUAGACAGAUGG

30 Su(Ste)

2538 UGGCCACACUGUCUCCUCCUGAGACU

3 no match

2539 UUAAUGCCGGAAGCGAUCCCACUGCUGA

3

0 coding gene2540 ACGACCAAGAGAGCUCUGAUGACGA

3

0 transposon

2541 ACGAGUGUUAUUGUGGGCCGGUAC

30 ncRNA

2542 GACUGUAAAUCUUGAGAUCGGGC

3 no match

2543 ACAACAAACAACACAUACCCGCUG

32544 GGGCAACUGUGAGGGGAUCCUCAA

3 no match

2545 CGGCCAUAGUGAUCCGGUGGUCCCG

3 no match

2546 ACAUACUCACACACUCCCACACACACAC

3

0 repeat2547 UGUCCUGGGCUGCACGCGCGCUACAAU

30 ncRNA

2548 UGACUCAAGUUCAAAUAGGUUUGC

30 transposon

2549 UAGAUGUCCUGGGCUGCACGCGCGCUA

30 ncRNA

2550 CUUAAACGAGUGUUAUUGUGGGCCGG

30 ncRNA

2551 CCGAUUAUCAAACCUUUUUUGAAGC

30 transposon

2552 GGUUAAUUCCGAUAACGAACGAGAC

30 ncRNArRNA

2553 AACGAGAUUCCCACUGUCCCUAU

3

1 ncRNArRNA

2554 ACUCGAAUCAACAAAUUGCGCCGA

3

0 coding gene

CG41545-RA¦CG41545

2555 UUCAAGGUUACCCCAGGAUGCUGUGCC

30 repeat2556 AAUAAUACAAACAGAAUUCCCGAAUGA

3

0 transposon

LINE

Cr1a

2557 GACAAAACAACAUCCCGGGAAAUGAGC

30 transposon

LINEbaggins

2558 UGCCGAGAGCUGAUGACGAGCUUUCUU

3 no match

2559 UCCGAAAUGAACGUCUUCAUUGGACC

3

0 transposon

LTR

gypsy82560 UGGCUCCAUUUCCGGUGACCGUGUG

30 coding gene

CG13340-RA¦CG13340

2561 UUAAUGCCGGAAGCGAUCCACUGC

3 no match

2562 UGAGACCGCCCCUGGACGACCCACG

30 Su(Ste)

Su(Ste)2563 AUCCUGAACGCGCCCGAUCUCGUC

3 no match

2564 CGGCUCAUCUCAUCCUGAGUCGC

3 no match

2565 ACCGUCACCAUACCCGACACUUACCCC

30 transposon

2566 UGUUUCAUCGUUAGACGGCUCGGCU

32 AT-chX

2567 GGUUCGAUCCCGUUCACCUCCACC

3 no match

2568 CCGGAUAUUACAGGCGAUUUAUUCC

32569 CUGGGAAACGGGGCGCGGCUGGA

3 no match

2570 GUAACCGAGAAACGUGUUGACAUCUGU

30 transposon

SAR̲DM

297

297

rRNA
CG12717-RA¦CG12717
LTR

opus

LTR

GATE

trf

AT-chX-B

CG33715-RE¦Msp-300

rRNA
LINE

LTR

bagginsflea
Su(Ste)CG41580-RA¦CG41580

LINE

G6
rRNA

LTR

GATE

(TG)n
rRNA
LINE

Doc3
rRNA
rRNA

LTR

Quasimodo

trf

LTR

opus
AT-chX-B

0 transposon

LTR

HMS-Beagle

0 transposon

LTR

invader2

2571 ACCGACGACAGAUCUUUCAAAUGUC

32572 AAGCCACUGUGAUUGAUACAACAGACAA

3 no match

0 ncRNArRNA

2573 AGGUGGAAAUAAAGAAAGUACA

3 no match

2574 AAAACUGAUAGACAGAUGGACGGAG

32575 UGGGAACUCUAAUGGGACUGCCGG

3 no match

0 Su(Ste)

Su(Ste)2576 GAAAAUGGUCGAGUGGAUAUACAGAG

32577 CCACUCCCGACCCGGGGAGGUAGUGACGAA

3 no match

2578 AGACGUGAUACUCCUCUACCCAGU

32579 CUGCGGGAUGAACCGAACGCCGGGUU

3 no match

2580 GGCGGCGUGUCCGAGCGGCCGAAGGU

3 no match

2581 CAGACCCGAUGCUGCGCUCCUACUCUAG

30 coding gene

CG7212-RA¦cdm

2582 CCGAACUUGAGACCGCCCCUGGACGACCC

30 Su(Ste)

Su(Ste)2583 GCACACAGAGAAGAGCAGAUGAGAGCA

3 no match

2584 GACCUCAGAUCAGACGUGGCGACCC

3 no match

2585 UGAACGCGCCCGAUCUCGUCUGAUCU

3 no match

2586 AGAUCAGACGUGGCGACCCGCUGAA

3 no match

2587 AACCCUAGAAGCAAUUGAUGAUGUGA

3

0 transposon

LTR

GATE

2588 GACAAUCCCAAACGCAGACAUCGAGC

30 transposonLow̲complexity

F-element

2589 CGCAAACCCAAAAUUACAAUGCACG

3

1 no annotation

2590 CAGUGUUGGCUGAAGUACUCCAGG

3

1 Su(Ste)2591 UCCUUGGAAUGUGUUGGCAAGUAGCA

3

1 transposon

LTR

ninja-Dsim-like2592 AAAAGAGAGUAAUUUUGGCCGUCAC

3

0 transposon

DNA

FB

2593 UCCGAAGUGACAGACCGAAUCGCAA

30 transposon

LTR

Quasimodo

2594 CACGCGGGCGGCCCGGGUUCGUUUCCC

3

1 ncRNAtRNA

2595 AGUAUCUAGGACUACCAUGGUUGCA

30 ncRNArRNA

2596 AUGGCUCUCUCAGUCGCUUCCCGGGU

3

1 ncRNA

2597 GCCCGAAAAAACGACUUGGUUGACACU

3

0 transposon

2598 AGCGUUGGAUUGUUCACCCAUGC

30 ncRNA

rRNA

2599 GCGCGGGUAAACGGCGGGAGUAA

3

1 ncRNA

rRNA

2600 ACGUCGGCUACCCACCCGACCCGUC

3 no match

2601 GCAACGGGUAACGGGGAAUCAGGGUU

30 ncRNA

2602 AUGUACAAUGCUGCCGAGUUUGCCAA

3

0 transposon

LINE

G2

2603 UGCUCAUUCCGAACAUACACCGACGA

3

1 transposon

LINE

Doc

2604 UUUGUCAAUAAACAAGAUUCCCGAA

3

0 transposon

LTR

micropia2605 UGACGUGCAUCAUUCCGUUGUGCGAAA

30 coding gene

2606 UGCUCUCGAAUGUAUGCCCGAUAUUUAU

3 no match

2607 ACUGAUCACAUUGCCUUCGUGUUA

30 transposon

2608 UAAGAAGAUGUCCGGACAGCUGGGC

30 Su(Ste)

2609 AAAACCUGUAGAUGAUCCUGAGUCGC

3

1 transposon

LINE

Helena2610 GCGAAUGGCAUCCGGAUGAGAAAU

30 transposon

LTR

flea

2611 UGGGCUCCGGGGGAAGUAUGGUUGCA

30 ncRNA

rRNA

2612 ACCGAGCCUGGUGAUAGCUGGUUGUC

3 no match

2613 CGAGGCCCUGUAAUUGGAAUGAGUAC

30 ncRNArRNA

2614 UGAUCCAAUACCAUCCCCGUCAAGGUGCC

3 no match

2615 CGUAACAAGGUUUCCGUAGGUGAACC

30 ncRNArRNA

2616 UGGCUCCCUCAGUCGCUUCCCGGGAAA

3

1 ncRNA

2617 AAUUACAUUAGACGAGACGGCCCUACA

3

0 transposon

LTR

opus

2618 UCAAGCAGGCGUUCGACAGAGUGU

30 transposon

LINE

G2

2619 UGCUCUCGAAUGUAUGCCCGAU

3

0 transposon

LINER1-element2620 AGGGACGGUCGGGGGCAUCAGU

3

2 no annotation

2621 AUGGUUUCAACGGGUAACGGGGAAUCA

3

1 ncRNA

2622 CCGUUACUCAGCUAGUAUAAUUGC

30 transposon2623 UACGAACAGAAUACGAGUUGAUGG

3

0 no annotation

2624 GCCGAGCUGUGACCAUCGAGCUAG

32625 GAAGACGAAAUCCAAACUGACAAUGGGA

32626 GCGGGUGUUGACGCGAUGUGAUUU

32 ncRNA

2627 UAGUCCCGCAAAUCUUAGUCGAGUAAA

3 no match

2628 GACAAACUUACCAUCGAGAUACCACC

3

0 transposon

2629 UGUUUCAUCGUUAGACGGCUCGGGG

3

1 AT-chX

2630 AAAAUUACAAAGACGACGGCCCAC

3

0 transposon

LTR

springer

2631 GUUCGAGAAAAAUUGACGAAUUGCUGA

3

0 transposon

LTR

invader2

2632 GGGCUGGGUCGGUCGGGCUGGGGCGC

3 no match

2633 CAGACAUCUACUUCCCCCCGCUCC

30 transposon

LTR

invader1

2634 GCAGCAACACCCGAACGUGCGAGU

30 coding gene

CG17736-RA¦schuy

2635 GCAACCACGACUCCUCGGUAAACUCGGU

30 coding gene

CG6773-RA¦sec13

2636 CUCAGCGAUGUAUGGGGCAAGUCAAC

3

0 coding gene2637 CACAUCAACAGAAAGCGUAUCCAGGCC

30 transposon

LINE

G2

2638 UGCUCUCGAAUGUAUGCCCGACAUAC

3

1 transposon

LINER1-element2639 UAACAAGAUGCAUACGAUGUGGCUC

30 transposon

DNA2640 GCACACAGAGGAGAGCAUACGCCGGU

3 no match

2641 ACCCUGAACGCGCCCGAUCUCU

3 no match

2642 AUCGAGGAGCUCAUUCGGAGUCAGGAC

32643 GACACAGAGGGAGCAGAUGAGAGCA

3 no match

2644 UAACAAGAUGCAUACGAUGUGGCUCC

30 transposon

DNA2645 CACCAAGAUCAUCAACCCGUGUUA

30 transposon

LINE

Cr1a

2646 CCGAACUCGACGCGGUUGUCAUGAA

3

0 no annotation

2647 UACACACUCAUCAACCAAAGGACGUAG

3

0 no annotation

2648 CAAGCUAAAACGUGGAUUCCCGCUGGA

30 transposon

LINE

R1

2649 CGUGAAGCGAACCCGGUGAACUGAA

3 no match

2650 AGCUGCCAUACUGCGAUCCACUGAAG

32651 AGAGCAUAAACCCAUACCACGACGAA

3 no match

2652 GAUUCCGCAGUGCGUUGAUAUGGC

30 Su(Ste)

2653 GCAUUCGAGACCCAACGACACACAUG

30 transposon

1 transposon

LTR

McClintock

0 transposon

LTR

HMS-Beagle

Su(Ste)

rRNA
LTR

gypsy

rRNA

CG13340-RA¦CG13340
LINE

Cr1a
Su(Ste)

rRNA

rRNA
LINE

INE-1

0 transposon

LINER1-element

0 transposon

LINE

Porto1rRNA

LTR

accordAT-chX-B

CG42398-RA¦SteXh:CG42398

0 coding gene

1360

CG14039-RA¦qtc

0 ncRNA

1360

rRNA
Su(Ste)LINE

Rt1b

2654 UGUUCCAUCGUUAGACGGCUCGGG

3

1 AT-chX

2655 AGCUUCAUCCAAGAGAACUGUGCCC

30 transposon

LINER1-element

2656 UACAAGCUGAGCUAGACCACUGUGU

30 transposon

LINE

RR497832657 UUGAAAAUCCGGGGGAGAGGGUGU

3 no match

2658 UGCCUCAACAUUUGGUGACCUCGACGU

3

0 no annotation

2659 GGAGAAGAUAGCCACCUCGGAGU

30 coding gene2660 AUUCCGUGGGUGGUGGUGCAUGGCCGU

3 no match

2661 UAGGACUCCCGGGGGAAACAUGGUC

30 transposon

2662 UAAUGUCCCUUAAAUCAGCACUCG

3

0 no annotation

2663 GCCGGGGCGAGGAGGAGGACUAGCUG

30 Su(Ste)2664 CAUGUCAUAACAACUAAACACGAAGACC

30 transposon

2665 GGCUUUGGAGGCGCCGUAGUUACCACC

3 no match

2666 AGCGUCCGACGAAUACCCUGGGGGG

3 no match

2667 CGGCAGGGUUCGUGACUGGGGUG

3 no match

2668 AAAGGAAUUGACGGAAGGGCACC

30 ncRNA

2669 GACCGAGCCAGAUGUACCAGUUCCU

30 coding gene2670 UAGGACAAUGAUGCGACCCGUCUCUA

30 transposon

2671 AUCCUCAACUGUGAGGGGAUCAUCAA

3 no match

2672 AGAUGUAACGGGGCUCAAGUGA

3 no match

2673 CAAACCGAGAGGAGACUUUCACC

3

1 coding gene2674 AUAGCGACAACCAGAGUUCCCAGU

3

0 transposon

2675 GCCCCGUACGUGAAAUGACCUGUG

3 no match

2676 CGCGCAUGAAUGGAUUAACGAGAUU

30 ncRNA

2677 GUAGUGACGAAAAAUAACAAUACAG

30 ncRNA

2678 UAUACCGUUACCUUCACCACCUGGCGA

3

0 transposon

LINE

Doc4

2679 ACCAAGAUGAUCAACUCGUGUUAU

3

0 transposon

LINE

Cr1a

2680 AAAGGAUUGACGGAAGGGCACCACC

3

2 ncRNA

2681 AUGCUCUCGAAUGUAUGCCCGAUAUA

3

0 transposon

2682 GCAUUCCUGCGUAGUACGAGAGGAAC

30 ncRNA

2683 GUAGCAAAAAUAACUCCGAAUUAUGCC

3

1 transposon

2684 UCCGCAGUGCGUUGAUAUGGCCAGC

30 Su(Ste)

Su(Ste)2685 CCGAACUUGUGACCGCCCCUGGACGACC

3

1 Su(Ste)

Su(Ste)2686 GAUGGUCCGAAAGCACCGACGCCU

3 no match

2687 GGCUAAGGAGGGAUGAACCGGGCCAGG

30 ncRNA

2688 UGAGACUUUAUUACACCUUGGCCUA

30 transposon

LTR

gypsy82689 CAUCAAGCCUGAGAGGUGAUGCGUAGCC

3 no match

2690 GCCCCUGAUGAAGAAGAGAUGCCCA

3

0 transposon

LTR

ninja-Dsim-like2691 ACCGAAGAAAACAAAGCCUCUGCCAAC

3

1 transposon

LINE

F

2692 UGCUCUCGAAUGUAUGCCCGAUAUACGGA

3

0 transposon

LINER1-element2693 UGAUCCAAUAAAAACUGUACACAGACG

30 transposon

LTR

invader62694 CACUGCAAUACUAAGUCGAUCCAG

3

0 transposon

LINE

Doc3

2695 GACUGAGAAGAUAUUGUACCCGUGA

30 coding gene2696 AUCGAUAUUAUCCCAGCACUACGAAGCG

3

0 no annotation

2697 AGCUCGAUCGUGUGACUCCGGGUAG

30 transposon

LINE

Doc2

2698 GCGCGCGAUGGUUAGCUCAGACCGG

3 no match

2699 GCACACUACAUGAGUCAGUCACUUGA

3

0 transposon

LINE

Cr1a

2700 AAGGGAACGGGCUUGGCGGAAUC

3 no match

2701 CGGGACAUCAUGCUGGCUGAUGACCAGUA

3

1 transposon

LTR

GATE

2702 UGGCUUUCUCAGUCGCUUCCCGGGA

3

1 ncRNA

2703 UUCGGCCCGAACCCUUCUGGUGUGU

30 transposon

LINEbaggins

2704 UGCGCGAAGAAGGUGAACGAGAAGGC

3

1 transposon

LINE

G6

2705 CGAGGCCCUGUAAUUGGAAUGAGUA

30 ncRNArRNA

2706 GUGGCUAUGAGAGGCGCCGUAGUUUU

3 no match

2707 GGCGGGUGUUGACGCGAUGUGAUUUC

3 no match

2708 UUCAAGGUUACCCCCAGGAUGCUGU

3 no match

2709 ACAAAUAGGACAAUUAAUUCGAGA

3 no match

2710 AUGGGUAUUUACUCGACGCGUUCCGGA

3

0 coding gene

CG11598-RB¦CG11598

2711 UCACACAGAGGAGAGCAGAUGAGAGCA

3 no match

2712 UGGGACAUGUGCUUUUAUUAGGCUAAA

30 ncRNArRNA

2713 AGGGACAUUAUUGUGGAAAUGUGACG

3 no match

2714 UAAUACAUGCCGACGGGCGCUGACCCCC

3 no match

2715 CCACUUGUCGUGCUGUCGCUGGUCUGA

3

1 coding gene

CG32351-RA¦CG32351

2716 GAUCCUCAACUGUGAGGGGGAUCCUCAA

3 no match

2717 AAGACAAUUAUCCGAUACCGCUUAU

30 transposon

LTR

flea

2718 UAGACAGAAAAUAAGGGGACACGCCG

30 transposon

LTR

opus

2719 GUUUCGCAAAAGUUGACCGAACUUGA

30 ncRNA

2720 UCGGAACUUUUGUAACUUUUUCGA

3

0 transposon

DNA

FB

2721 UCAGAUAAAACGUGUUAGUAAAU

3 no match

2722 GAGUCCGCUAGCUCAUUUCCCGGGAUGU

3

1 transposon

LINEbaggins2723 UAAACCAUUCGUAGACGACCUGCU

3 no match

2724 CUAUCCGUUAGGCAGCUGUGACAG

3 no match

2725 CAAGCCGAGAGGUGACCCAGUUGAGAG

3 no match

2726 UCACACAGAGGAGGGCAGAUGAGAGCA

3 no match

2727 UCGCCGAAUCCCGGGGCCGAGGGAGCGA

3 no match

2728 UGCUGAGCAACGAUUAGACCCCGA

3

0 transposon

LTR

micropia2729 GAAGUGGAGAAGGGUUCCAUGUG

32 ncRNA

2730 AGAGGGACGGCCGGGGGCAUUCG

3 no match2731 UGGAUAGGGGACCUCAACGGCUA

3 no match

2732 CUGUAGCCCGAUGACCAGGUAAAUCCGGU

3 no match

2733 UGCUCAUUCCGAACAUACACCGACACU

32734 GGAGAAGCCGGCGGGAGCCCCGGGGAG

3 no match

2735 UCGGCCGAUCGAAAGGGAGUCGGGUU

3 no match

2736 CUCUCUCAGUCGCUUCCCGGGAA

3

2 transposon

0 ncRNA

AT-chX-B

CG7832-RA¦l(3)L1231
Low̲complexity

F-element
Su(Ste)LTR

QuasimodorRNA
CG30488-RA¦CG30488
LTR

ninja-Dsim-like

CG12717-RA¦CG12717
LTR

DM88
rRNA
rRNA

rRNA
LINE

R1-element
rRNA

LINE

Cr1a

7SLRNA-RA

pseudogene

rRNA

rRNA

rRNA

LINE

Doc

rRNA

2737 UUCAGGGGGAUCUUUGAGUGAUGA

3

0 transposon

LINEbaggins2738 AAAACCUGAAGAUGGUCCUGAGUCGC

3

1 transposon

LINE

Helena2739 CCCGAAAGCAGACGAGGUGACGUACC

3

1 transposonLow̲complexity

F-element

2740 AACCAAAGCUUUUGGGCUCCGGGGG

30 ncRNA

2741 CAUGAGAGGUUUGGCCAUAUAAGCA

3

0 transposon

LTR

copia

2742 AUUGCUUGUACCUGAGUCGUUGCG

30 transposon

LINE

Circe

2743 AAAGGAGUCUAACACGUGCGCGAGUC

3 no match

2744 ACCGUCCCAGGUAGACCGUUAUACCAAU

3

0 transposon

LTR

G4

2745 AAGAGUAAUAUGAGCGCCCAGAGU

3

1 transposon

LTR

opus

2746 GGUCGUUCUUCCCGGAGGAGAUCUCGUCC

3 no match

2747 AAAUCAGCCGACCAAUAGCAUUAA

3 no match

2748 AUCAAGAACGAAAGUUAGAGGUUCGAA

3

0 ncRNA

2749 GCCCUAAACGAAUCGACAUGUCAAC

3

0 transposon

LINE

INE-1

2750 CACGCAGUUACCGACCGUUGUGUCU

30 transposon

LINE

Rt1a

2751 AUGGAACAGAAACCCGCGCCAGAG

3

0 transposon

LTR

ninja-Dsim-like2752 GCUAAACCAUUCGUAGACGACCUGCU

3 no match

2753 CCUGUAAGCGGAUCCCAUAGGAUG

3 no match

2754 UGUUCAUCGUUAGACGGCUCGGG

32755 AUCUGGAGGUCCUGUGUUCGAUC

3 no match

2756 GUGAGGUCUCCGGACGUGAUCAC

30 ncRNA

2757 UACGAAGUUUCUGAAAGAUGUUGGC

30 transposon

2758 CUUCGGGAUAAGGAUUGGCUCU

30 ncRNA

2759 GGGAUCCUCAACUGUGAGGGGAUCCUCAA

3 no match

2760 ACAUCAAUCGCUGAAAAGGCACCGGGAU

3

1 transposon

LTR

accord2761 UGCUCUCGAAUGUAUGCCCGAUAUCA

3

2 transposon

LINER1-element2762 ACUCGCCGAAUCCCGGGCCGAGGGAG

3 no match

2763 CGAGAUAGUACGAAUCGGUUACAA

3

1 transposon

LINE

I

2764 UCUCAUCGUCGUAGAACAAGCCCUA

3

1 Su(Ste)2765 AGAACUGGCGAUGCGGGAUGAACCG

3 no match

2766 ACCAUAAACGAUGCCAGCUAGC

30 ncRNA

2767 CAACCUCGAACCUGCUAGCAACAA

3

0 transposon

2768 UGUUUCAUCGUUACGGCUCGGGCGG

3 no match

2769 CAGGGUUCGAUUCCGGAGAGGG

32770 CGGCUCAUCUCAUCCUGGGGCUGUAG

3 no match

2771 GCAUUCGAGACCCAACGACACACA

3

0 transposon

LINE

Rt1b

2772 CAAUUCUGCAACUCGAGCGACGCC

30 transposon

LTR

Quasimodo

2773 ACCCAGAACGCGCCCGAUCUCGU

3 no match

2774 ACCUGAUUGAUAGCGUAGACGACGACCC

30 transposon

LINE

Rt1a

2775 ACCGAAAGUAUAUGAGAAGAACACC

3 no match

2776 GAUGUGCCUAGGACGGAAAUAUGACCA

30 coding gene

CG17991-RA¦CG17991

2777 CUUCGGGAUAAGGAUUGGCUCUGA

30 ncRNArRNA

2778 GAGGGCGUGAAACCGUUAAGAGGU

3 no match

2779 GGGUUCCGGGGGGAGUAUGGUUGCA

32 ncRNA

2780 UCUGGAGUAAUAAGGCGGGCAGUGAA

3

0 transposon

2781 UUCCGGAGAGGGAGCCUGAGAAA

30 ncRNArRNA

2782 AAGGAGUCUAACACGUGCGCGAGUA

3 no match

2783 GUGCCCGUAGCUCAGCUGGAUAGAGCAA

3 no match

2784 CGCAAACCCAAAAUAACAAUGCAG

30 repeattrf

2785 ACUCAUAUCCGAGGCCCUGUAAUU

30 ncRNA

rRNA

2786 CUGAAGUUGAGUGGUGAAUCCGUGG

30 coding gene2787 UAUUCGGAAACGUUUUCUCCAGUA

30 transposon

2788 GGUGCCAAAAUUAUCGAGCUGCCCUAC

3

0 coding gene2789 AACUCGCCGAAUCCCGGGGCCGAGGGA

3 no match

2790 GACAAAGAGAAGCGGUGUGUGAUCGAU

3

1 transposon

2791 AUUCCGAUAACGAACGAGACUCAAAUA

30 ncRNA

2792 UCCAACUGUGAGGGGAUCUCAA

3 no match

2793 GGCGAGAUGGGUGACAGCCCCGUACGGGAC

3 no match

2794 AGCCGCAGACGCAGACCUACGAGGUGGAC

30 coding gene2795 UAGCUUCAUCCAAGCGAACUGUGCCC

30 transposon2796 GUUGCAAUUAAACAGAUUCCGCAGU

30 Su(Ste)

Su(Ste)2797 AAUCAUGCCGACGGGCGCUGACCCC

3 no match

2798 UCUCAUCAUCGUAGAACAAGCCCGAU

3

0 Su(Ste)

Su(Ste)2799 AAGAGGAGAAGGUGGCUUUGAGAG

3

0 no annotation

2800 AAGCAGCGUCGGGCGCGGUUAGUAC

30 ncRNA

2801 AGCUCGAUCAUGUGACUCCGGGU

30 transposon2802 AUGCCUGAACGCCUCUAAGGUCGUAUCC

30 ncRNA

2803 GUGGCAAGAGCGAUUUGAAGGAGUA

30 transposon2804 UCCUCUUUAGAAUAACUCGAUAUU

3

0 no annotation

2805 AGGGACAUUAUUGUGGAAAAUGUGAC

3

0 no annotation

2806 UGUUUCAUCGUUAGACGGCUCG

3

0 AT-chX

2807 AAAACCUAGAAGAUGAUCCUGAGUC

3 no match

2808 CACGAUGAUCGAUGACGAACUACGAAGG

3

0 transposon

LTR

ninja-Dsim-like

2809 ACCCAAAAGCAGACGAGGUAACGUACC

3

2 transposonLow̲complexity

F-element

2810 ACCGCAACGACCUCCCAGCCCAGC

3

0 transposon

LINE

Doc

2811 CGAGAAACUUAUCGACUAAUCGAC

3

0 transposon

Unknown

RR50960

2812 CUUGGAUUGACUCUAGACCGGAAGC

3

1 transposon

LINE

G

2813 AUCUGUGGGGUUCCAAGCAGCUGAA

30 coding gene2814 UUGAUCUUGACACCAAACCGAGCAGU

30 transposon2815 UGGAGUAUAAGGGUGAGUCCAAGA

3

0 coding gene

CG18743-RA¦Hsp70Ab

2816 CGGCAGGGUUCGUGACUGGGGUGAA

3 no match

2817 AUUCCGAUAACGAACGAGACUCA

30 ncRNArRNA

2818 GUGUUAUUGUGGGCCGGUACUAUUACU

30 ncRNA

rRNA

2819 AUUCCGAUAACGAACGAGACUCAAA

30 ncRNA

rRNA

rRNA

rRNA

2 AT-chX

AT-chX-B
rRNA
DNA

Tc1-2
rRNA

Su(Ste)rRNA
LINE

0 ncRNA

G2
rRNA

rRNA
LTR

diver2CG41545-RA¦CG41545
LTR

frogger
CG8137-RA¦Spn2

LTR

297
rRNA

CG7349-RA¦CG7349
LINE

R1-element

5SrRNA
LINE

Doc2
rRNA

LTR

micropia

AT-chX-B

CG4931-RA¦Sra-1
LTR

accord2820 UGCUCUCGAACGCGUGCCCGAUAU

30 transposon

2821 ACGCCGACGAGGAGGACAAGAACGA

3

0 coding geneLINER1-element2822 GUAACAACGAAGAUGAUUCUGCCC

31 transposon2823 ACCACCCUGAACGCGCCCGAUCUCGA

3 no match

2824 AUCCUCGAUAGUAUAGUGGUUAGUAUCCC

30 ncRNAtRNA

2825 AUGGCUCUCUCAGUCGCUUCCCAA

32 ncRNArRNA

2826 GGUGAGAUAAUCCCGCAAUAUGGCA

3

0 no annotation

2827 CUAACUGGAACGUACCUUGAGCAU

30 ncRNA

2828 GGAGAACUUUGGAGUGAAGACCGCGC

30 transposon

LTR

ninja-Dsim-like2829 UAUUCCGAUAAACGCCCAUUACACUUGC

30 transposon

LTR

gypsy32830 CUACCGAUUGAAUUAUUUAGUGAGGU

30 ncRNA

2831 AGCUCGCGUUGAAUUCGUCCCUGC

3 no match

2832 UGGGCCUGGAGUACUUCAGCCAGA

30 Su(Ste)

2833 GAUAAUUCCAGACCAACCAAAGA

3

0 transposon

2834 UCCGAUUUCAAGUACCAGGCGAAAC

3

2 repeat2835 AUGUCCACCAAAGGCAUGCCCGA

3

0 transposon

LTR

opus

2836 UCUAGGCUGAGCGGAGAACCAGAGUUGA

3

0 transposonLow̲complexity

F-element

2837 ACGAGUAAUAUGAGCGCCCAGAGA

3

1 transposon

LTR

opus

2838 UCUGGGUCGGGGUUUCGUACGUA

3 no match

2839 CCCUAAGACGCCUGCAGAGAACGCA

30 transposon

LINE

G2

2840 CAACCUAUCCAUCAACCCAGACGA

30 coding gene

CG18743-RA¦Hsp70Ab

2841 UGAAAGUAGUUGGUGGGCACGUGGC

30 Su(Ste)

Su(Ste)2842 ACUGAUGAUGUGUUGUUGCCAUG

3 no match

2843 UGGACAAAAAAACGAAUGACACAG

3

0 transposonLINEaccord2

2844 AUUCCGAAGACAAGUAUACCGUGG

30 transposon

LTR

micropia2845 CUUCGGGAUAAGGAUUGGCUCUGAAG

3

0 ncRNA

2846 CCUGACAUUACAACAAAUAUUUUUUGA

3

0 Su(Ste)2847 UCCAACGAGAGAGCGGAGAGCCAGCG

30 transposon

2848 UCCGUGGGUGGUGGUGCAUGGCCGUU

32 ncRNA

2849 CAGGACCAUAUCCGAAGACGCGGC

30 transposon

LINE

Rt1b

2850 GAGGCAAUCACCGAGAGCAUCAACGG

3

0 transposon

LINE

F

2851 GACAAAUCUACGAAAAUACGACGUC

30 transposon

LTR

diver22852 CAGUUCAUUCUUGAGGCCUUCGAG

3

0 transposon

LINE

G2

2853 AAGUUAACGAUCACAAAGGCAUCACGC

3

0 no annotation

2854 UCACGUCCAGUGUCUGGUUGAAGUACU

3

0 no annotation

2855 AGCAUACGAGGAAGCAUACGAAGAUAU

3

2 transposon

LTR

invader32856 CUGCCCUAUCAACUUUUGAUGGUAG

30 ncRNA

2857 UGUUUCAUCGUUAGACGACUCGGGCG

3

1 AT-chX

2858 AUCAGCUGAACAACACUUUUCUCCGA

3

0 transposon

LTR

gypsy122859 CAACAUUGAAUACCGAAAAUAUAA

3

0 transposon

LTR

gypsy122860 ACGAGUAAUAUGAGCGCCCAGAGUG

30 transposon

LTR

opus

2861 UGGGAACUCUAAUGGGACUGCCGGUG

3 no match

2862 GAUCGUUCCUUCGAUGACUGAUU

3

0 transposon

LTR

flea

2863 GCUAAUCCCACUGCCAUGCUGCUCUGC

30 coding gene

CG6439-RA¦CG6439

2864 UGUUUCAUCGUUGGACGGCUCGGGC

3

1 AT-chX

AT-chX-B

2865 AGGUAGCCAAAUGCCUCGUCAUCU

30 ncRNArRNA

2866 ACCAGAGAUCUAGAGGGCCCAAGG

3

1 no annotation

2867 CAGGACUUUGCAUACCGGUUCUCGGAA

30 transposon

2868 UCUCAUCGUCGUAGAACAAGCCCGAAA

31 Su(Ste)2869 CCCAGAUGCCUCAGGUUGCACCCA

30 transposon

2870 UUGUAACUAGAGCGAUGUAGAUACAC

3

0 no annotation

2871 AAGCCAGUUACCGAAGCUGCGGA

3 no match

2872 CGCCCGUCGCUACUACCGAUUGAA

30 ncRNArRNA

2873 AAGGAAUUGACGGAAGGGCACCAC

30 ncRNArRNA

2874 AUUACCCAGGUGCGUGUUCUGUAAGAA

3

0 coding gene

CG6694-RA¦CG6694

2875 ACUACUGACUGACCGAUAGUGAACC

3 no match

2876 CGAGAGAAGACUUUCACCCGAUGAG

30 coding gene

CG12717-RA¦CG12717

2877 AGAAGACUCACCCGACGAGAAUCAAA

3

0 no annotation

2878 AGAGAUCAAAGAGUGGAUUCGAGG

30 transposon

LINE

Rt1a

2879 UACAUCGAAAAGCGAGUUGAUGUGU

31 transposon

LTR

Max

2880 AUUGGUUGAACUCUAGAUAACA

3

0 ncRNA

2881 UUGGAAGAAACACGAUAUGAACUAAA

30 transposon

2882 AAUCGAAUGAGACCUUGGAGGACU

30 ncRNA

2883 GAAGCAUCGGGUUAGUAAGUAUACGGGC

3 no match

2884 UGUGCUAGAAGACGAUUUUCGGA

3

0 transposon

2885 AUCUCAUCGUCGUAGAACAAGCCCGA

3

1 Su(Ste)

Su(Ste)2886 GAUGUCCUGGGCUGCACGCGCGCUACA

30 ncRNArRNA

2887 AAUCUCGCGCCGGGCCGUACCCAU

3 no match

2888 GCAGAACUCCGAUGGCGAUAGCAAC

3

0 no annotation

2889 CAGACUGACAAAACACAUCCUUUAGGC

30 transposon

LINE

BS

2890 GAUUCCGUGGGUGGUGGUGCGUGGCCG

3 no match

2891 GAUGACUAUAUCAUUCUCGGGAUUAGA

30 transposon

LTR

gypsy82892 CUAAGUUGUAUUGACAAAUUUAGCAA

30 transposon

LTR

opus

2893 UCCCGCAAUAUGGCAAUCGCUCGA

30 coding gene2894 CAAGACCAGAACCAAUGGACGUGGA

3

0 transposon

LINE

HMS-Beagle22895 CGAGAAUCCGAGCAUUUUGUCACA

3

0 transposon

LTR

HMS-Beagle

2896 UCUGAAGAUAAGUGGAGUUGGAAAGC

30 transposon

LTR

ninja-Dsim-like2897 ACCCGAUCGGACCUCACGCAGCUGCAGA

30 transposon

LTR

invader42898 UGUUUCAUCGUUAGGCGGCUCGGGC

3

1 AT-chX

2899 GGGUGUUGACGCGAUGUGAUUA

3 no match

2900 CAGUGCCAAGGCUAAAGAUGAUUCGU

30 coding gene

2901 UUUGUAAGGACCUGAGAACUUGUACGC

30 transposon

2902 GGUGGAGUGAUUUGUCUGCUUA

32 ncRNA

CG32351-RA¦CG32351
LTR

invader4

rRNA

rRNA
Su(Ste)LTR

IdefixRSPrRNA
Su(Ste)Unknown

RR50960
rRNA

rRNA
AT-chX-B

Simple̲repeat

I
Su(Ste)

LINE

R1

rRNA
LINE

Porto1
rRNA

LINE

Cr1a

CG40609-RA¦CG40609

AT-chX-B
CG2658-RA¦CG2658
LINE

Doc4
rRNA

2903 UACUUGUUCCCCGGAUAGUUUAGUUACG

30 ncRNA

2904 UCCGAAGACAACGAGGAACAGAGC

30 transposon

LTR

rRNA

2905 UUUGAACAUCGAGAAUACUGCACAG

3

0 transposon

LINE

Doc

2906 CCCGAAAGCAGAUGAUGUAGCGUACC

3

0 transposon

LINE

F

2907 CCGUAGGAUGGCUGUGUUGCAACCC

3

0 transposon

LTR

GATE

2908 UGCUCAUUCCGAACAUACACCGACA

30 transposon

LINE

Doc

2909 CACACAACAAAACUAUCACCCAGC

3

0 transposonLow̲complexity

F-element

2910 CGAGAUGUUCAACUACACGGAUUCGC

30 transposon

LTR

3S18

2911 UACGUAAACAACCCCAGGCUGACUCCGU

3

1 transposon

LTR

Max

2912 UUCAACAAGGAUAAUAUGCCCGCUCA

3

0 coding gene

2913 GAGGCCCUGUAAUUGGAAUGAGUA

30 ncRNA

2914 UAGACAGAGAUUUAACCAGAAGCCACAA

3

0 transposon

LTR

gypsy42915 GGGAAUACCGGGUGCUGUAGGCUUU

3 no match

2916 CGAGUAAUAUGAGCGCCCAGAGUG

30 transposon

LTR

opus

2917 AGAGAGCGAAAACUUAAAUACCGAGA

30 transposon

LTR

Dm88

2918 UCCGAUCUCCUGAGUCGGACUCCGAGC

30 transposon

LINE

R1

2919 CCGCUUCAUCUCGGCACCGGACCCA

30 coding gene2920 AAGACAAAGAUCGCAAACCUGCUGCA

30 transposon

LTR

gypsy62921 AACUGGGAAGGUGGGACUUGAGUUU

30 transposon

LINE

G2

2922 AAUACAAACAGAAUUCCCGAAUGAGAG

3

0 transposon

LINE

Cr1a

2923 AGACCGAUAUACCUUCGACGACCAGACU

30 coding gene2924 GAGAUGACAAUGUAGUGAACGCCA

3

0 transposon

LTR

invader42925 UAUGAAGAUGGACAACGGGGAUGUU

3 no match

2926 GACCUCAGAUCAGACGUGGCGAC

3 no match

2927 CACGACCCCCAGCUACGUGGCCUUCACCG

3 no match

2928 GACGACGAGCGAGAUCCGGAUGUC

30 transposon

LTR

ninja-Dsim-like2929 AGGAACGGUCGGGGGCAUCAGU

3 no match

2930 ACCCUGAACUCGCCCGAUCUCGU

3 no match

2931 CAAGAGUCAAGCCGAUUAUAGUUUAGG

3

0 transposon

LTR

diver22932 UUAUAAGGAUGAUGAUACCGAUUA

3

0 no annotation

2933 ACUGAAUAAACGAAAUGGAUGACA

3

0 transposon

LTR

invader42934 CUUGAGCGAGGCAUGUCUGUUAU

3

0 transposon

LTR

Dm88

2935 GAGCGCACGUGUUAGCACCCGAAAG

3 no match

2936 CUUUAGAUGAGAUUCCGCUGGCGC

30 transposon

LTR

invader1

2937 CACUCAGUUACCGACCGUUGUGUCUG

3

1 transposon

LINE

Rt1a

2938 CCAGUCCGAGUGUGUUUCUGAUCCUACC

30 coding gene

CG30372-RB¦CG30372

2939 GGCCCAGAAGCGAAGACCGGCGAAUUC

3

0 coding gene

CG15525-RB¦CG15525

2940 UGCUCUCGAAUGUAUGCCCGAUAUUUU

3 no match

2941 UGAGACUACAAACGUAUUGCGGACC

3

1 no annotation

2942 CCCAAGAAAAAUCCCAGACCUGAUCGA

3

0 transposon2943 CUGGCUGCAACGAGGUGACCGAGGCGG

30 coding gene2944 ACCCUGAACAAGCCCGA

3

1 coding gene2945 ACGAGUAAUAUGAGCGCCCAGAGUU

3

1 transposon

2946 ACUGAUGAUGUGUUGUUGCCAUGGU

3 no match

2947 AUGGUGUAAUGGUUAGCACUUUGG

30 ncRNA

2948 CAGAUACCCGUUACUCAGCUAGUA

3

0 transposon

2949 CGCGGAAAGACGGAAAGACCCCAUGA

3 no match

2950 UUGAACGUGUCCUGAAAGUAGUUGG

30 Su(Ste)

2951 UCUGAAGAUAAGUGGAGUUGGAAA

30 transposon

LTR

ninja-Dsim-like2952 CAUCAUUGUUUUCCCGAUGCAUCCGA

3

0 transposon

LINE

R1

2953 UGGAUACAAAACGAGAGAAAGCGGC

30 transposon

LTR

GATE

2954 CCCCAUGAACGAGGAAUUCCCAGU

3 no match

2955 AGAACCAUCACUGGGGCACCGUGGUACA

3

0 transposon

LINE

F

2956 CAGUUCAUCAAAGCGCCUUACUG

3

0 transposon

LTR

flea

2957 AUUGACAUCAUUCAGCGAGCACAA

3

0 transposonLow̲complexity

F-element

2958 GAGCACCGUUUCCCGUCCGAUC

3 no match

2959 ACCCUGUGGACCCUGUGGACCUUGUUG

32960 ACCCUACUGAUGGUGUGUUGUUG

3 no match

2961 CGACUCGUUUUUAAAUUUCGCAA

30 transposon

2962 CAGACUCGGAACGCCUCAUUGGUGA

30 coding gene2963 GCUGACGAUAUUGCCCUGUUGUAC

30 transposon

LINE

BS

2964 UGGGCCCGAACCCUUCUGGUGUGUUA

3

1 transposon

LINEbaggins

2965 CAAGUUCUCGGCUGAUCAGUACCC

3

0 transposon

LTR

Quasimodo

2966 UGGAUCCUCAACUGUGAGGGGAUCCUCAA

3 no match

2967 GCUGGGUCGGUCGGGCUGGGGCGC

3 no match

2968 UUGACUCUAGUCUGGCACGGUGAAGA

3 no match

2969 AUGCCUUGGCGAUUACAGGCGACGAAGGAC

3 no match

2970 UCCGAGGCCCUGUAAUUGGAAUGAGUU

32971 CAGCACACAGAGGAGAGCAGAUGAGAGCA

3 no match

2972 UAGUACAAUAGAUCCGACUGGGCCA

30 transposon

LINEbaggins

2973 GCCGAACGUAGUCUCUCGAGAGCGAU

3

1 transposon

LTR

invader1

2974 GUUCGUGGAGUGAUUUGUCUGGUU

30 ncRNA

2975 AGGGACAUUAUUGUCGAAAAUGUGACA

3

2 no annotation

2976 CUGGUUAAUUCCGAUAACGAACGAGACU

30 ncRNA

2977 CUCGCCGAAUCCCGGGGCCGAGGG

3 no match

2978 CUGGAACGAACUCAUCUGGCCCGCGUA

3 no match

2979 AAACCUAGAAGAUGAUCCUGAGUCGC

3 no match

2980 UGUUCUCGAAUGUAUGCCCGAUAU

3

1 transposon

LINER1-element2981 CCCGCCAUAACACUUCUCGUCCCUGCGA

3

0 transposon

LTR

invader42982 CCGAACAUCGAAGAUUGGCCUACCCU

30 transposon

LTR

2983 GUGGAAGUCAAAGGAGUUGAAAUCGCC

30 transposon

LTR

Quasimodo

2984 CCCAAUUCAAGAAGUCGGUGUACC

3

1 transposon

LINER1-element2985 UUUGUAAGGACCUGAGAACUUGUACG

3

0 transposon

LINE

Doc4

1731

CG40601-RA¦CG40601
rRNA

CG31538-RA¦CG31538

CG5089-RA¦CG5089

LINE

Doc
CG32085-RA¦CG32085
CG3615-RA¦Atg9

LTR

opus
tRNA

LINE

INE-1
Su(Ste)0 coding gene

CG17945-RA¦Mst84Dc
LINE

Cr1a
CG31359-RA¦Hsp70Bb

1 ncRNA

rRNA

rRNA
rRNA

297

2986 GUUAGAGGUUCGAAGGCGAUCAGA

30 ncRNA

2987 UACCGACGACUAAUUAUGGACAAU

3

0 no annotation

rRNA

2988 ACCUGAUUGAUAGCGUAGACGACG

30 transposon

LINE

Rt1a

2989 GCAUCCGUUACUGUCGAGUCAA

3

0 transposon

LTR

gypsy122990 CGGACUCUAAGACGGUGCUGAGAUG

30 transposon

LTR

ninja-Dsim-like2991 CACCAAGCGUUGGAUUGUUCGCC

3

1 ncRNA

2992 ACCCCCGCCACGCAGUUUUAUCCGGUAA

3 no match

2993 AAAACCUGAAGAUCGAUCCCUGUAGUCGCC

3 no match

2994 CCAGCGAAUACCGAGGGUUUUGGC

30 transposon

2995 UGUUUCAUUGUUAGACGGCUCGGGC

3

1 AT-chX

2996 CCCGAAAGCAGACGAGGUAGCGUAC

3

0 transposon

2997 GACCGAGUAGUGUAGUGGGUGACCAU

3 no match

2998 ACAACGGCGGGAGUAACUAUGACUCU

32999 AUCCAUGAGCAGGUUGAAGCCGGUGU

3 no match

3000 GUGAUCGAUACGCCCCCUCAGAGU

33001 GGACUGUGAGGGGAUCCUCAA

3 no match

3002 GAUAGGCAGAUGUGCCCGAGCGUGG
3003 UUAUGGCUCUCUCAGUCGCUUCCCGG

rRNA

LTR

GATE
AT-chX-B

LINE

1 ncRNAF
rRNA

0 transposon

LTR

Max

3

0 transposon

LINE

Cr1a

3

0 ncRNA

rRNA

3004 AGGUGGGGAGUUUGACUGGGGCGGUAC

3

1 ncRNA

rRNA

3005 GAGUCCAAGAGAUUUGCCCCCGAUCC

3 no match

3006 CCGAACUUGAGACCGCCCCUGGACGAAU

3

1 coding gene3007 CAAAACUGCAAGUUUAGAGACGGGUC

30 transposon

LTR

ninja-Dsim-like

3008 UGCCAAACGAACCCAUAGCGCAGA

30 transposon

LINE

INE-1

3009 CGCUGAGAGCUGAGAGCCCGCAGA

30 ncRNA

3010 UGCUCUCGGAUGUAUGCCCGAUAUA

3

1 transposon

LINER1-element

3011 ACUCGCCGAAUCCCGGGGGCCGAGGGGAGC

3 no match

3012 AAGAGGCGUGAAACCGUUAAGAGGU

3 no match

3013 GCAUAAUCAAAACAUCCGAUGACGAAG

3

0 transposon

LTR

McClintock

3014 AGGGAUGAUAAGGAGCCGAAAAACGCCU

30 transposon

LTR

springer

3015 GCUGACAAAACUAAGAGUGCCCAAGA

3

0 transposon

LTR

springer

3016 AUCAAUCGCUGAUAAGGCACCGGGAGA

3

2 transposonLINEaccord23017 GGCGAGCGUGAGAUGGCUAACGA

3

0 coding gene3018 UGCUCUCGAAUGUAUGCCCGAUUA

3

2 transposon

LINER1-element

3019 AACGAUUCUAUUUUUCCGUGCCCAGC

3

0 transposon

DNA

FB

3020 GCGGGUGUAGCUCAGUUGGUUAGAGCGCC

3 no match

3021 GAAACCUAGAACGACAUAAAUGGCAC

30 transposon

LTR

HMS-Beagle

3022 UAAACCUGAAGAGAGCCCUGAAU

3

0 transposon

LINE

Rt1b

3023 AGAUCCUCAACUGUGAGGGGAUCCUCAA

3 no match

3024 GCCGAACGUAGUCUCUCGAGAGCGAAU

3

2 transposon

LTR

invader1

3025 AACGCAGGUGUCCUAAGGCGAGCU

3 no match

3026 GCGUAAAACAAUUCAAGAUCUGGCCGG

30 transposon

LTR

blood

3027 GACUCGUUGACUGCGCACAGUUGCAUC

3

1 transposon

LTR

micropia3028 ACGACGAGCUCCCCGAUUUGUGAUUCC

30 coding gene3029 ACGGAAUGGAAUCGAGCGCUGAG

30 transposon

LINE

X

3030 CAAGUUCUCGGCUGAUCAGUACCCG

3

1 transposon

LTR

Quasimodo

3031 GUUCCUCGGGAUCAAAGGCAACGAGU

3

1 Su(Ste)

3032 UCUCAUCGUCGUAGAACAAGCCC

30 Su(Ste)

3033 UGACGUAAUUCGGUUGACCUGUUCGA

3

1 transposon

LINE

Doc

3034 ACGGAAGACCCGCUCCCCGGCGC

3 no match

3035 GACAGAAACGAGGCCACCGCCGUCCC

3 no match

3036 UACGAGAACAUCAUCAUCCUCGGC

3 no match

3037 UCAGAGCAUACAGUAGGCCUAAGU

3

0 transposon

LTR

mdg3

3038 CGGGAUAAGGAUUGGCUCUGAAGA

30 ncRNA

3039 AGGUGGAAAUGAAGAAAGUACA

3 no match

3040 ACUUCAUAACCGAGCGACUGUUCAAUC

3

2 transposon

3041 AUCAAGGCCUUCUGGUGCAACCGAA

30 Su(Ste)

3042 CGAGGUCUAAUCCAGCUCAGCAGC

30 transposon

3043 ACCAGAGAUCUAGAGGGCCCAAGAU

3

1 no annotation

3044 UAGGCAUGGAACUAGACCUGUUGAG

3

0 transposon

3045 GAUCAUGGAAGUCGAAAUCCGCUAAGGA

30 ncRNA

3046 AGGAUCUUCAACUGUGAGGGGAUCCUCAA

3 no match

3047 AUCCCACGGAACACCCGAGCAAUG

3

0 transposon

3048 AUUUCCUGGGCUGCACGCGCGCUAC

3

1 ncRNA

3049 AUCGCAAAGAAACUGUUUCGAAGGACC

30 coding gene

3050 UGUGCUAGAAGACGAUUUUCGGGCCG

30 transposon

LINE3051 GGCGGCGGGGGUGCCGGGCAGCUUCCGGGA

3 no match

3052 GCGGACAGACAGCAAUUUUGGCC

30 transposon

DNA3053 CGUUGACCAAUUUCCGAACAUACGCCAC

3

0 transposon

LTR

3054 CAAGAAAUGACGAAAGCAAAGACAA

3

0 transposon

DNA3055 CGGGUAACGGGGAAUCAGGGUUCUAU

3

1 ncRNA

3056 ACAAAAGAUAAUACGGCCAAUGUGG

30 transposon

LINE

RR49783

3057 AGAAUAAGAAGACGUCGACGACGAA

30 transposon

LTR

HMS-Beagle

3058 AUAUCCGUGAACUACAUCCCAACGA

3

0 no annotation

3059 UGAACCAGAAAACAAGCCUCCUAGAAA

30 transposonLow̲complexity

F-element

3060 CAAGCAAGCAAAUUCAUUUUUUAGA

3

1 transposon

DNA

1360

3061 CAAGAUAUGACCAAAGUAAAGACAC

3

0 transposon

DNA

1360

3062 CAACAUGUCGAGCCCAACAACAACAA

3 no match

3063 GUUCGUCCUGAGUGACCGCGUACCUUU

3 no match

3064 CAGUCUAUCAAUCCGAAUUGCAUCA

3

0 transposon

DNA3065 AUCUAGGACUACCAUGGUUGCAACGG

30 ncRNA

3066 AUCCUCAACUUGAGGGGAUCCUCAA

3 no match

3067 CUCCUGAUAUGACGCGUGACAUGCCA

30 transposon

LINE3068 CAAGAUAUGACCAAAGCAAAGACUA

3

1 transposon

DNA

CG40820-RA¦CG40820

alphagamma-element

CG8542-RA¦Hsc70-5

CG34269-RA¦CG34269

Su(Ste)Su(Ste)

rRNA
LTR

GATE
Su(Ste)Low̲complexity

F-element

LINE

INE-1
rRNA

LINE

G2
rRNA
CG12717-RA¦CG12717
Cr1a
1360
DM88
1360
rRNA

Ivk
rRNA
G2
1360

3069 AGAUGCAACUGAAGCGCGAUCUCGA

30 coding gene

3070 CAAGAUGAAGAAGAACCGCAUUCA

3

1 coding gene

3071 AUAGAAGAAAUUGCCGUUACAA

3

0 transposon

3072 CAAGAGUUCCCGUGGUAGGCAGUAGU

30 ncRNA

3073 AUCGAUAUUAUCCCAGCACUACGAA

3

0 no annotation

3074 CCAGACGUGAUACUCCACUACCCA

30 transposon

LTR

HMS-Beagle2265

3075 UACGUAACUAUACACUUCAUAAAGACC

30 transposon

LINE

Helena3076 AAGAUAAAGGAGACGCACCGUUGCA

3

1 transposon

LTR

flea

3077 CCCGUAGAAAACCUUUGGAGUGC

30 transposon

LTR

HMS-Beagle

3078 UCCCCAAAACAUAACAGACCCUCCUGAA

3

0 transposon

DNA

Tc1-2

3079 AAUAACUGUAAUUAAUAACUGGCCCCC

3

0 transposon

LINE

HMS-Beagle2

3080 GACCAAUGUUGGCGACGAGAAGG

3

0 transposon

LTR

GATE

3081 GACGAACUACCGAGCCCGAGCCUU

30 transposon

LTR

Max

3082 ACUCGCCGAAUCCCGGGGGCCGAGGGA

3 no match

3083 GACUGAGCGGGGACGAGGAGGAUG

30 coding gene3084 AGAGAAUUGAUUUUGCGUUUGAAUGA

3

0 transposon3085 ACUUCGGGAUAAGGAUUGGCUC

30 ncRNA

rRNA

3086 AGAAACUUCAUCUCAGUCGGAUUAGCCC

30 coding gene

CG41521-RA¦CG41521

3087 CUGGCCAUACCCCUCUGCCUCCCGAAG

3 no match

3088 GAAACCGAAAAAUCACAAUUUGCC

30 transposon3089 ACUUACAAUUGUGGUUAGUACUAUACC

30 ncRNArRNA

3090 UGCACCGAAAAUAUUUGCGAGGAGAU

3

0 repeattrf

3091 UCGCCGAAUCCCGGGGCCGAGGGAGU

3 no match

3092 CCGCCAGCUAAGGUCCCUAAAAUUGGCU

3 no match

3093 CAAACCGAUAUGCUAUCUUGGCUGAC

3

1 transposon

LINE

Doc

3094 AACGAGAAUAUACACAGAGACUUCCAA

3

0 transposon

LINE

Doc3

3095 AGCAAACUCUUUCGUCAUGCCGAGG

30 transposon

LINER1-element3096 CAGACCUAUACAGAUUGGAACAUU

30 transposon

LTR

McClintock

3097 UGGUAUCCAGGACUUUGCAUACCGG

30 transposon

Simple̲repeat

I3098 ACGAGUAAUAUGAUCGCCCAGAGU

3

1 transposon

LTR

opus

3099 GCAACCCAAGGGACAAGGCAGCAC

30 transposon

LINE

G2

3100 UGUCCUUUGUGGGCUCCGACCAGG

30 coding gene

3101 CACUAUCAGACAGCAACAUGACCC

30 transposon

LTR

McClintock

3102 CCAAAAAACAACUAACACCUACCGACU

3

0 transposon

LINE

TART-A

3103 CAAGAACGAAAGUUAGAGGUUCGAAG

30 ncRNA

3104 UGGUAAAGAAAACCAUGUAGCAGAUGC

30 transposon

3105 ACACCGCCCGUCGCUACUACCGAU

30 ncRNA

3106 AAAUACCAUAGCAAGCUUCACACGC

30 transposonLow̲complexity

F-element

3107 GACAUCAUUUCGAGACCCAUUUUA

30 transposon

LTR

gypsy123108 GCAACGGGUAACGGGGAAUCAAGGUU

3

1 ncRNA

3109 GGAUCCUCAACUGUGAGGGGUCCUCAA

3 no match

3110 GAUGGGGGCCGCUUGGGAACACCGC

3 no match

3111 CCCGGAAUGUUCUCAGGAAGAUGACUCA

30 ncRNA

3112 UGGACAGAAACCACCCGACGGGUAGC

3

0 transposon

3113 AAAAGGAAUUGACGGAAGGGCACCACC

3

1 ncRNA

3114 GAUCUCCUGAGUCGGACUCCGAG

3

0 transposon

LINE

R1

3115 ACCGAAUUAAUCGCGAGGCUGCAU

3

1 transposon

LTR

mdg3

3116 UAGAACAAGCCCGAGGAACUGUCGAA

30 Su(Ste)

3117 CUUCAUCCAAGCGAACUGUGCCCG

30 transposon

3118 GGGUUCCGGGGGGGAGUAUGGUUGC

3 no match

3119 GACCAAAUCAACACAUCCGACCAGC

30 no annotation

3120 UCCCACGGAACACCCGAGCAAUGCCACC

3

0 transposon

3121 AUACCAAGAUGAUUCAGUGCGCCG

30 coding gene

CG7642-RA¦ry

3122 UAGUGAGGUCUCCGGACGUGAUCACUG

30 ncRNArRNA

3123 AGGCGUAGUCGAUGGAUGACGGGUU

3 no match

3124 UUAACCAGAACUGAGUCCAGAACAGA

3

1 transposon

3125 UGAUCCUGAAGCCGGUGAUCGAUAGU

30 repeat3126 CCAGCUCGGGGAGGUAGUGACGAAAA

30 ncRNA

3127 CGUAAAACAAUUCAAGAUCUGGCCGG

30 transposon

LTR

blood

3128 UCGGCCCGAACCCUUCUGGUGUGUUGG

30 transposon

LINEbaggins

3129 GAAGAUAUCAGGGGCCUUCGCAG

3

0 transposon

LTR

HMS-Beagle

3130 UUUGCAAAAACGAGAGCGAUAGGC

32 transposon

LTR

micropia3131 UCGCGGUGAAUGCGUUCCCGGGUCUUGUA

3 no match

3132 AACCGAUAUGGUUGGACCACAAUCUU

30 ncRNA

3133 GCCGAACGUAGUCUCUCGAGAGCGAGA

30 transposon

3134 UGUCCCAAGGCCAGCUCAGUGCGGAC

30 ncRNA

3135 UGGCUCUCUCAGUCGCUUCCCGGGAAA

30 ncRNA

3136 AGCAACUGAACCCAAGAAAAUCGCC

30 transposon

LINE

Doc

3137 GGAUCCUCAACUGUGAGGGGUCUCAA

3 no match

3138 AUGGAACAGAAACCCGCGCCAGAGG

30 transposon

LTR

ninja-Dsim-like3139 CUUCGGGAUAAGGAUUGGCUCUGAAGA

30 ncRNA

3140 UCUCAUCGUCGUAGAACAAGCCCGAUAU

3 no match

3141 CCGUACUUUACUUUUGCAACAAAAC

33142 ACCAGGUGGCGCUGAACCCGCAGA

3 no match

3143 GGACUCAUAUCCGAGGCCCUGUAAUUGGA

30 ncRNA

3144 GCGUAAAACAAUUCAAGAUCUGGCCU

3

1 transposon

LTR

blood

3145 ACGAGUAAUUGAGCGCCCAGAGU

3 no match

3146 AAUUCCGUAAACGAAGCCCAAAGUUU

3

1 transposon

LTR

Rt1c

3147 AACGUAGAGAGCAACAUGCCUGGAGUC

30 coding gene3148 UGCUCUCGAAUGCUUGCCCGAUA

30 transposon3149 CCGGCGACGGUGUGGGUCCCGAGCUGGUCU

30 coding gene3150 GGCACGAAACGGUAUUGGCACCAU

3

0 transposon

3151 AGCCUGGGCAACAUAGCGAGACCCCGUC

3 no match

0 transposon

CG6223-RA¦betaCop
CG4750-RA¦loopin-1
LTR

G4
7SLRNA-RA

pseudogene
DNA

LTR

invader2

McClintock

CG17896-RA¦CG17896

rRNA
LTR

Quasimodo
rRNA

rRNA

snoRNA
LINE

INE-1
rRNA

Su(Ste)LINE

R1-element

LINE

G2

LTR

gypsy3trf
rRNA

7SLRNA-RA
LTR

invader1
rRNA
rRNA

rRNA
DNA

1360
rRNA

CG5338-RB¦RpS19b
LINE

R1-element
CG6439-RA¦CG6439

LTR

Idefix

3152 CAAGCAUUCGACAAAGUCUGGCUCGAC

3

0 transposonLow̲complexity

F-element

3153 UGGAACGAAAUUGGCCUGAUUAGC

30 transposon

LTR

GATE

3154 CAAAGGCAUGCCCGAUGUCCGCGAG

3

0 transposon

LTR

opus

3155 GUGGUGGUGCAUGGCCGUUCUUAGUUC

20 ncRNA

3156 GCGGAAAGAGAGCGAUUUUGGCC

20 transposon

DNA3157 UGCUCAUUGAACUCCCAAAGUGUGC

20 transposon

LINE

Doc

3158 UCCUCAACCAGCACGACAAGGCCCAA

2

1 transposon

LINE

G2

3159 CAAGUUCUCGGCUGAUCAGUACCCA

2

0 transposon

LTR

Quasimodo

3160 GCCAGAGAACCCUCUAAUUGGGCCCGU

2

1 transposon

LINEbaggins

3161 CCGACAAGGAGACGGGUGACGAGAAGUC

2

0 coding gene3162 UUCGUAACAAAAUUCCCCAUCGACC

20 repeat3163 AAAACAGACACGAACGAAAUUUUGA

2

0 transposon

LTR

Idefix3164 ACCCGAAAUAACCGAAACGGAAGACC

2

0 transposon

LTR

accord3165 AACUGAAUAAACGAAAUGGAUGACGC

2

1 transposon

LTR

invader4

3166 ACUCGCCGAAUCCCCGGGGCCGAGGGAGC

2 no match

3167 AAACCAAAGCUUUGGGCUCCGGGGGA

2 no match

3168 AGAACCAUCACUGGGGCACCGUGGUAC

2

0 transposonLow̲complexity

F-element

3169 GCAUUCGAGACCCAACGGCACGUGAUC

2

2 transposon

LINE

INE-1

3170 GGACCCUGUGGACCCUGUGGACCUUGUU

20 coding gene3171 CCAGACGUAAUACUCCACUACCCGGAA

2

1 transposon

LTR

HMS-Beagle

3172 CAUCCUAGAAUCGACCGACCAGCUGUGC

20 transposon

LTR

invader3

3173 ACCCCUGAACGCGCCCGAUCUCGU

2 no match

3174 AAAGCUUAUCCUUUGCUUGAUGAUUCGA

2

1 ncRNA

3175 GCAUUCGAGACUCAAUGGCACGUCAU

2

1 transposon

LINE

Rt1b

3176 AAUGGGCGUGGGUUUUGUGUUGAGA

2

0 transposon

LINE

Circe

3177 UCACCAAGCGUUGGAUUGUUCACCCA

20 ncRNA

3178 UACUUCGUUACUACCCAUUUGGAA

2

0 no annotation

3179 GGCUUUGAGAGGCGCCGUAGUUAA

2

1 no annotation

3180 GUCUGGUUAAUUCCGAUAACGAACGAGG

2

1 ncRNA

3181 AGCUUCAUCCAAGCGAACUGUGUCCG

2

1 transposon

3182 UAUGGCUCUCUCAUUCGCUUCCCGGGA

2

1 ncRNA

3183 AGAGAUGGAUUGGUGCCUUCGGGA

2 no match

3184 GCGAAUGAUAAGUUUCAUGCCACCGG

2

0 no annotation

3185 UUCUUGACAACCCGAUCGGACCUCA

2

0 transposon

3186 UAUGGCUCUCUCUGUCGCUUCCCGGGA

2

1 ncRNA

3187 UCUACACCAAAGUAAGCCGUGCC

20 coding gene3188 GUGCUAGAAGACGAUUUUCGGGC

20 transposon

3189 ACCAGAGAUCUAGAGGGCCCAAGAA

2

0 no annotation

3190 AUCAACUGUGAGGGGAUCCUCAA

2 no match

3191 UACACAGAGGAGAGCAGAUGAGAGCA

2 no match

3192 GGAAUCGACGGCGCCCAGCGAUACAAC

2

1 coding gene

CG32656-RA¦CG32656

3193 AAGAGUUCCCGUGGUAGGCAGUAGU

2

0 ncRNA

7SLRNA-RA

3194 UCCGGGAAGAACGACCGGCUCUCGCC

2 no match

3195 UGAGAUAUGCUAGCAGACUGGAGAACC

2

0 transposon

LINE

G2

3196 CAGACAAGAAGGUGGCAUCGGUG

20 transposon

DNAH

3197 AGGUCAUCGGUUCGAUCCCGUUUA

2 no match

3198 GAGGGCGUGAAACCGUUAAGAGG

2 no match

3199 CGUACGCUGACGAUAUUGCCCUGUU

20 transposon

LINE

BS

3200 AGAGGCGUGAAACCGUUAAGAGGU

2 no match

3201 CGGAGAGGGAUCCUGAGAAACGGC

2

1 ncRNA

3202 UGAGCGAACAAACCCAACAUAGUGCA

2

0 transposon

LTR

McClintock

3203 CGGACUCUAAGACGGUGCUGAGAU

2

0 transposon

LTR

ninja-Dsim-like3204 AGGAAUAAUGGAAUAGGACCGCGGUUC

2 no match

3205 UAUUUACAAAACCGUUGCCUGCUGC

20 transposon

LINE

Cr1a

3206 UUCGAUUUCAAGUACCAGGCGAACA

2

0 repeat

RSP

3207 CGGAUCAGUUCGCCCAAGUCGCCGCC

2

0 coding gene

CG5151-RA¦CG5151

3208 GCCGGGCCCGUAUAACGUUAAUGA

2

1 ncRNA

rRNA

3209 ACGAGUUCGAUCGCGAGCGGCAGGCCC

20 coding gene3210 UGCUCUCGAAUGCUUGCCCGAUAUU

2

1 transposon

3211 AAGAGGACGUGAAACCGUUAAGAGGU

2 no match

3212 CUGGGAACACCGCGUGUUGUUGGCCU

2

1 ncRNA

5SrRNA

3213 GACGGAGCUGCUGAUUCAUCCGGACA

2

1 coding gene

CG6750-RA¦CG6750

3214 CGGAGGUGUCCCAAGGCCAGCUCA

20 ncRNA

3215 ACAGCUAUGUACCCGACGGCAAGAC

2

0 transposon

LINE

G2

3216 AUACAAACAGAAUUCCCGAAUGAGAG

2

0 transposon

LINE

Cr1a

3217 ACCAACUACAACACAUCGAGCGACCG

20 transposon

LINE

Doc3

3218 AAGAGACAAAGCAGGCUGCACGAAA

2

0 transposon

LTR

micropia3219 UGUUUCGUCGUUAGACGGCUCGG

2

1 AT-chX

AT-chX-B

3220 ACGGAGGUGUCCCAAGGCCAGCUCAG

20 ncRNA

rRNA

3221 GAAAGAAAAGGGAGGUCGAGGUUU

20 coding gene

CG42481-RA¦CG42481

3222 CAGCCUGAGAGGUGAUGCGUAGCCGA

2 no match

3223 GACGCGAACACGAAGCUCGAGGUC

20 transposon

LTR

3224 GUAACCUGGAACUUAACCCAAACAA

2

0 transposon

LTR

3225 CGUAGAACAAGCCCGAGGAACUGUCGC

21 Su(Ste)

3226 AGCAGAGACCGUACCCGAAACCG

2 no match

3227 AUAUCCGUGAACUACAUCCCAACGACCG

20 no annotation

3228 GCUUGGGAACACCGCGUGUUGUUGGCCU

20 ncRNA

3229 UAGGCGAAACGAACCGGGUACCUC

20 transposon

3230 AGGUGGGGAGUUUGGCUGGGGCGGC

2 no match

3231 ACUGAGAAGAUAUUGUACCCGUGAA

23232 AGUGGGAGACGGUGGUGGGUGAUGA

2 no match

3233 CAAGCGGUGGAGCAUGUGGUUUAAUU

2 no match

3234 AAAGAGAGCAAUUUUGGCCGUCAC

2

rRNA

CG8583-RA¦sec63
SAR̲DM

CG17945-RA¦Mst84Dc

rRNA

rRNA

rRNA
LINE

R1
rRNA

LTR

invader4
rRNA
CG31359-RA¦Hsp70Bb

LINE

Cr1a

rRNA

CG10958-RA¦CG10958
LINE

R1-element

rRNA

GATE
297
Su(Ste)5SrRNA
Simple̲repeat

0 coding gene

0 transposon

1360

I
pseudogene

LINE

Cr1a

3235 AUGGCUCUCUCAGUCGCUUUCCCGGGA

2 no match

3236 UAGUGAGGUCUCCGGACGUGAUCACU

23237 GCGAAGAUGUAACGGGGCUCAAGACGU

2 no match

3238 GAAGAUGAAAGCAGAACCGAGUCUGA

2

0 transposon3239 AAAAACCGAAUGCGAUCCGGAUU

20 coding gene

3240 ACCACUGAAACAGCAGAAGCCGCA

2

0 transposon

3241 GUUCGAUCCCGGAUGGAACCACCA

22 ncRNAtRNA

3242 CGUAAACAAUUCAAGAUCUGGCCGGC

2 no match

3243 UGCCCGAGGAUUCCGACACCUACUUGCA

20 coding gene

CG7269-RA¦Hel25E

3244 GAAUCCCGGGGCCGAGGGAGCGAGACCCGUC

2 no match

3245 UGAGGUCUCCGGACGUGAUCACUGUGA

20 ncRNArRNA

3246 ACUGGGAGAAGGUGGGCUUUGUG

2 no match

3247 GUGAUGUCAACGUUUGAUCCCCUG

2

0 transposon

LTR

ninja-Dsim-like3248 UGCCGAACGUAGUCUCUCGAGAGCG

20 transposon

LTR

invader1

3249 AAGGACACUAGCUUCUUAAAUGGACAA

20 ncRNA

rRNA

3250 AAGCGCUGGUAAACGGCGGGAGU

22 ncRNA

rRNA

3251 GAGUGCCUAGUGGGCCACUUUUGGU

2 no match

3252 AACACAAAGACGGGGUGACCACGGGA

20 coding gene3253 AGAACGAUGACGAUCCCACGGCUGGAU

2

1 transposon

3254 ACGAGGUAACCACGAGCAGCGAGGAGC

20 coding gene

CG11666-RA¦CG11666

3255 CGCGUCAGAAAACGUUACGCCGACGAG

2

1 repeattrf

3256 GACGAGGAGGUCGAUGAGAUGAUCCGGG

2

0 coding gene

CG8472-RA¦Cam

3257 CCACCCUGAACGCGCCCGAUCUCG

2 no match

3258 ACAUUCAUAACCGAGCGACUGUUUAA

23259 AGAUCAACUGUGAGGGGAUCCUCAA

2 no match

3260 AGGACAAUUAUCCGAUACCGCUUAUC
3261 CAACCGACUACAAAGAUGCCAUACG
3262 ACCCCGAACGCGCCCGAUCUAGUC

2 no match

3263 AGCUCGAUCAUGUGACUCCGGGUAG
3264 UGUACUACCCCUUCAUGACUCAAAGAU

0 ncRNA

rRNA
LINE

Rt1a
CG4714-RA¦CG4714

LINE

X

CG5546-RA¦MED19
LTR

ninja-Dsim-like

1 transposon

LTR

GATE

2

1 transposon

LTR

flea

2

0 transposon

Unknown

RR50960

2

0 transposon

LINE

Doc2

2

0 transposon

LINE

Fw2

3265 GUGGGUGGUGGUGCAUGGCCGUUC

2

1 ncRNA

3266 UCCGGGAACAUGCCACCUCCGUUGUUGU

2

0 coding gene3267 GCCAAUGAAAGUCACCCCUAAACCCGA

2

0 transposon

LTR

rover

3268 UUAGCCGAUCUAGAUGCCCAGCAUU

22 transposon

LINE

Doc2

3269 CCGAACGUACCACGGUGCCCCAGUGA

2

0 transposonLow̲complexity

F-element

3270 UAAUAGGGAACGUGAGCUGGGUUU

2 no match

3271 AUGGCUCUCUCAGUCGCUUCCCUGGA

2

1 ncRNA

3272 CGGAUAUACAUUUUGCAAGUGACG

2

0 transposon

LINE

TART

3273 UGCGGUGAAUACGUUCCCGGGGCUUGUA

2 no match

3274 GACCAUGAGAUUACACUGGAGGAUGUAC

2

0 transposon

LINE

Cr1a

3275 AAAGCGCGAAGAAGAUGACUGGCC

2 no match

3276 GGUUCCGGGGGGAGUAUGGUUG

23277 UACUUGUUCCCCCGGAUAGUUUAGUUAC

2 no match

3278 AAGUCCCGCAACGAGCGCAACCCUCGC

2 no match

3279 AGAGAGCGAUUUUGGCCGUCACUAA

2

0 transposon

3280 GAGAAGAACGAUCCAGACAAGCCCA

2

0 coding gene

CG12366-RA¦O-fut1

3281 UUAGAUCGUUAACAGUUACUUGGAU

20 ncRNArRNA

3282 UCAACUGUGAGUGGAUCCUCAA

2 no match

3283 UCUAAUGAGACUGCCGGUGACAA

2 no match

3284 UUCGUCGAUAAACAGAUUUCUGAGUC

2

0 no annotation

3285 CCAGUCAGUAGAGCACUACCGCCGG

20 repeat

3286 AGAUCAGACGUGGCGGCCCCGGGU

2 no match

3287 AAAACCCGAGAUGAUCCUGAGUC

2 no match

3288 UCGAGAUCGCAGGAAUAAGGUUGG

2 no match

3289 UACGUCAACAUAUCAGGGCAGCCCG

23290 AGGGCGAGAGCCGGUCGUUCUUCCCGGAGG

2 no match

3291 CCCAAGAAAAUCGCCUGGCUACGACC
3292 GUGUACCCUGCACCCCAGCCUACAUCCA
3293 AAACUCUGGACCAGAUGAUAGAGGGC

2 no match

3294 UCGCAUCGUCGUAGAACAAGCCCGAGG

2

0 Su(Ste)3295 ACCCAGUUCAUUCUUGAGGCCUUCGAC

2

1 transposon

LINE

G2

3296 GCAACUCAAACUCGAAACGGCAUAA

2

2 transposon

LTR

ninja-Dsim-like3297 UAUGGCUCUCUUAGUCGCUUCCCGGGA

2

1 ncRNA

3298 GCUGAAUCAACAUAAACAUCGGGC

20 no annotation

3299 GAGACCGAAUGAUUUAACCCGGA

2

0 transposon

LTR

Rt1c

3300 CAACAAACAACACAUACCCGCUGG

2

0 transposon

LTR

GATE

3301 AGAGCAUAAAGACGACGAGAGUGA

2

1 transposon

LINE

Doc3

3302 GGAGUUAAAAAAUCACGUCAUCCCUAG

2

0 Su(Ste)

3303 GCAGCGACGAGAGCGAUGGGCCUG

2

0 transposon

3304 AACCAAAGCUUUUGGGCUCCGGGGGAA

20 ncRNA

rRNA

3305 UAUCUUCAACAAGGAUAAUAUGCCCGC

2

0 coding gene

CG40601-RA¦CG40601

3306 AGUCGGUCCUGAGAGAUGGGCGAGCG

2 no match

3307 CGACUCGAAAUAGUAACUACGUAAU

2

0 transposon

3308 UUUACUGAGACAUAGUGACAUCGGCCA

2

1 no annotation

3309 AUCACUGAGAUGCCCCGGCGCGGA

2

0 coding gene

CG14355-RA¦CG14355

3310 GCAGUCGUGGCCGAGCGGUUAAGG

2

0 ncRNA

tRNA

3311 AUAUCCGUACUACAUCCCAACGACC

2 no match

3312 UCUCCGGACGUGAUCACUGUGAC

2

0 ncRNA

3313 UCCUUAACAAGAACGACGUUGUCC

2

0 transposon

LTR

diver23314 UACAAGCAAGACCACCACACCCGACU

2

1 transposon

LTR

gypsy123315 CAAGAUAUGACCAGAGCAAAGCAAU

21 Su(Ste)

Su(Ste)3316 UCCUGAUGGAAGACCGAAACAGUUCUGA

2

1 ncRNA

rRNA

3317 AGGGGUGAUAACGAGUCUGCUUG

2 no matchrRNA
CG1763-RA¦nodrRNA

2 ncRNA

rRNA

DNA

1360

trf

0 transposon

LINE

Doc4

2

0 transposon

LINE

Doc

2

0 coding gene

CG17567-RA¦CG17567
Su(Ste)rRNA

Su(Ste)
LTR

GATE

LTR

17.6

rRNA

3318 ACAGAGAGAAGACUCACCCGACGUC

2

2 no annotation

3319 CUAUCCUGAAUUCACGCCCGCUGU

20 transposon

3320 ACUCGCCGAAUCCCGGGUCCGAGGGAG

2 no match

3321 UGAGUAACGGAUAUACGAUAUAGAU

2

0 no annotation

3322 CGCAAACCCAAAAUAACAAUGCAGG

2

0 repeat3323 CCCCUGACACAAGCACCCAGACCAU

2

1 transposon

LTR

McClintock

3324 CCGAACUUGAGACCCAACAACGCAAC

2 no match

3325 AGAGACAAUUGACGGUACCGCAC

2

0 transposon

LTR

Dm88

3326 GAGUUCGAAUCUCUUAGCAACCACC

2 no match

3327 CACCCUGAACGCGCCCGAUCCCCUC

2 no match

3328 CCCCUGGACAACCCACUAAGGCCUUGA

2 no match

3329 ACCGACGAUGAAAUGGCUGAGCUG

2

0 no annotation

3330 UAACCAUGAGACCGAUAGUAAACA

2

0 ncRNA

3331 AGCGAAAUGACUCUGUCCCGAUUC

2

0 transposon3332 ACUCGCCGAAUCCCGGGGGCCGAGGG

2 no match

3333 GUCCCGGGACAUGGCGUGGUGGGUAGUU

2 no match

3334 ACCCUGAACGCGCCCGAUCUCGUU

2 no match

3335 GUGGCUUUGAGAGGCGCCGUAGUUG

2

1 no annotation

3336 CGAGAUAGUACGAAUCGAUUACGAAA

2

0 transposon

3337 UCUGGCGAAGAUGACUACGAGGA

2

0 coding gene

3338 GUAGGGAGUUUGACUGGGGCGGUACA

2

0 ncRNA

3339 GCAACCGAUAACGCCCACCGAGGUCC

2

1 transposon

LTR

ninja-Dsim-like

3340 CAAUCCAGAAUGUUCUCCUUGAGG

2

0 transposon

LINE

G2

3341 AGACCAAGUAUCCAAGUUUCUCCGA

2

0 coding gene

CG4691-RA¦CG4691

3342 GUAUCACGAGAAGGAACAUACCAAGGA

2

0 coding gene

CG34074-RA¦mt:CoIII

3343 AACACCGAGAAGUGACGACGAGUGUCU

2 no match

3344 GUCCAGAGGAGGCGAGAAUUUUACA

2

0 AT-chX

AT-chX-B

3345 UCCCAGCUCGGGGAGGUAGUGACGAAA

20 ncRNA

3346 CAUUAAUGAAGUGUUGGCCCAAU

2

0 transposon

3347 UUGUUCCCCGGAUAGUUUAGUUA

20 ncRNA

3348 AUCGAGGAAUAAAGUUUACAAGU

2

0 transposon3349 AAAAAGGUCGUAUCCGUGCUGGACUGCA

2 no match

3350 AGAACUGGCGCUGCGGGAUGAACCGAAC

2

2 ncRNA

3351 UUGACUAUUAUUUGGAGAACCACAGCA

2

0 transposon3352 AUUGAGCGAACCCGGGGAACUGAAAC

2 no match

3353 GAUGGAAGACCGAAACAGUUCCGA

2

1 ncRNA

3354 AAGACCGUAAACGAAAAACUAAGAAUC

2

0 transposon

LTR

Idefix3355 CACUAUAACAACGGACCAGGGAAU

2

1 transposon

LINE

Doc4

3356 CCGAACGUACCACGGUGCCCCAGUGAUG

2

0 transposonLow̲complexity

F-element

3357 UGUUAUCUAAGGCGACAUGGGUGA

2

1 transposon

LINE

Cr1a

3358 AACCGAUUAACGUUGAAAAGUUACCGGA

2 no match

3359 AGUGCGCAGGUUGUGGGAAAAAGUACC

2 no match

3360 ACAAACAGUACACCUACUAGCCCA

2

0 transposon

LINEbaggins

3361 CCGCUGAGCCACUUUCAUGCUUGGGAUU

2

1 ncRNA

3362 UGCUCAUUCCGAACAUACACCGA

2

0 transposon3363 CCGCCCGUCGCUACUACCGAUUGAAUUA

20 ncRNA

3364 UGAGACUACAAACGGAUUGCGGACCC

2

1 no annotation

3365 UAAACGAGUGUUAUUGUGGGCCGGUAC

20 ncRNA

3366 AAGUCUGGUGCCAGCAGCCGCGGUAAU

20 ncRNA

3367 UUUGCAAAAACGAGAGCGAUAGAUC

2

1 transposon

LTR

micropia3368 UGGGUGCUAACGGGGCCGAUUUC

2

0 transposon

LTR

Rt1c

3369 GGUAGAGAGUGAUGCCGAGUAUAA

2

0 repeat3370 GGAUCAACUGUGAGGGGAUCUCAA

2 no match

3371 GGAUCCUCAACUGUGGGGGAAUCCUCAA

2 no match

3372 ACCCAUUACAUCCUAUACGGUAAUUU

23373 ACGAGUAUAUGAGCGCCCAGAGU

2 no match

3374 UCUCAUCGUCGUAGACAAGCCCGA

2 no match

3375 ACUUCGGGAUAAGUAUUGGCUCU

23376 CCCCGCGGAAAGACGGAAAGACCCCAUG

2 no match

3377 ACGACGCGAGAGGUGAAAUUCU

20 ncRNA

3378 CAGCAAACAAACAUCCUUGACGGAAUC

2

0 transposon

3379 ACCGAUUAAUCGCGAGGCUGCAAG

2 no match

3380 UCCAGGGGCGGUCUCAAGUUCGGC

20 Su(Ste)3381 CGUGGACGGCGUAAGUCCUUGUCA

2

1 coding gene3382 ACCUUCUCGAGCUAGCGGUUGA

2

0 transposon

LTR

3S18

3383 CCUCAAAUCAUUCACUGAGGGUAGA

2

0 transposon

LINE

G

3384 CAGCCAAGAGUUCCCGUGGUAGGC

20 ncRNA

3385 UGUUACAAAAAAAAGCUUCGUCUCGA

2

0 transposon

3386 ACCGAUUCGGCGACAGCAGCGAGGGU

20 coding gene3387 UAUCCAUCAGUCCCAGCCCAAGUA

2

0 transposon

3388 AAACCAAGCUUUUGGGCUCCGGGGGA

22 ncRNA

3389 CACGAAUUUACUACUGCUUUCAUCAGG

2

0 transposon

3390 AACUCGCCGAAUCCCGGGGCCGAGGGAG

2 no match

3391 UGAGACUACAAACGGGAUUGCGGACC

2 no match

3392 UCCGGGAACAUGCCACCUCCGUUG

2

0 coding gene3393 CGAGAUGUUCAACUACACGUAUUCGCC

2

1 transposon

LTR

3S18

3394 AUGUCUAUGAGAUGACCGUAAUGAG

2

0 transposon

LTR

ninja-Dsim-like3395 GACCAUAUCCGAAGACGCGGCUCUAA

2

1 transposon

LINE

Rt1b

3396 UCGCCGAAUCCCGGGGCCGAGGGAGCGAGA

2 no match

3397 GGCUCCGGGGGAAGUAUGGUUGCA

20 ncRNA

3398 GCUGCAGGACGGUAUAAUUCGACC

2

0 transposon

3399 AUCACCCUGAACGCGCCCGAUCUCGU

2 no match

3400 CUUGGGAACACCGCGUGUUGUUGGCCU

20 transposon

LTR

trf

rRNA
LINE

R1-element

LINE

I
CG9351-RB¦flfl
rRNA

rRNA
LTR

HMS-Beagle
rRNA

DNA

transib2
rRNA

LTR

opus
rRNA

rRNA
LINE

Doc
rRNA
rRNA
rRNA

trf

LTR

1 ncRNA

0 ncRNA

3S18

GATE

rRNA
rRNA
LTR

invader6
Su(Ste)CG9284-RA¦CG9284

7SLRNA-RA
LTR

gypsy3
CG14472-RA¦poe

LTR

McClintock
rRNA

LTR

GATE

CG1763-RA¦nod

rRNA
LTR

opus
5SrRNA

3401 UGAGUAAAUUGGACGAUGAGGCGU

23402 UACCACUCAUCAACCAAAGGACGUA

2 no match

1 transposon

LTR

Rt1c

3403 CACGCAAAAAGGCUCUGAGAACACGCAA
3404 AGGGAUGAGAUGCCAGCUGAGCAU

2

0 transposon

LINE

G6

2

0 transposon

LINEbaggins

3405 AUGACCAAGAACUGUGGGCACGAUA

2

0 transposon

LTR

RR50204

3406 UCUCAUCGUCGUAGAACAAGCCGGA

2

1 Su(Ste)

Su(Ste)3407 CUGCGAUCCACUGAAGCUUAUCCUU

20 ncRNA

rRNA

3408 CAACGGGUAACGGGGAAUCAGGG

20 ncRNA

rRNA

3409 UUCCUCGGGAUCAAGGGCAACGAGU

20 coding gene3410 UACGAACCCGAACGAAACCAUUUUGA

2

0 transposonLINEaccord2

3411 GACAAUGUGAACAAGACGAGCGCCGG

2

0 transposon

LINE

Doc

3412 CACACAGAGGAAGCAGAUGAGAGCA

2 no match

3413 AUAACGUGUCCUGAAAGUAGUUGGUGG

23414 AGAGAUGAUCAGCAGUUCCCCUG

2 no match

3415 ACACCGACGAGGGCGAGUUCGACUGGAC
3416 ACCCUGAACGCGCCCGAU

CG40635-RA¦CG40635

2 Su(Ste)

Su(Ste)20 coding gene

CG6963-RA¦gish

2

2 no annotation

3417 CGGGACAUGGUGUCGGACCGACUUG

2

0 transposon

3418 GACCCUGAUCCGUGAACGUGGAAUGGA

2

0 coding gene3419 UCCAGACGUAAUACUCCACUACCCGG

2

0 transposon

LTR

HMS-Beagle

3420 CAAUAUGUAAGAACACCAUGUACGGGU

20 transposon

LTR

Stalker2

3421 AGGAAAUGAUAGAACAAGGGAUUGU

2

1 transposon

LTR

Idefix3422 UCUCCCCGUGAGGCACCUGUAUU

2 no match

3423 UUCAACGGGUAACGGGGAAUAAGGGUUC

23424 GAAACCAACCGGGAUUGCCUUAGUAAC

2 no match

3425 GCUGAGAAAAAACGAAGUAUAACGA

2 no match

3426 UGGUGCCGGCGGUGAUGGGGGUUACU
3427 GCAGGACGGUGAUCAUGGAAGU

Simple̲repeat

I
CG4750-RA¦loopin-1

2 ncRNArRNA

2

0 coding gene

CG3506-RA¦vas

20 ncRNArRNA

3428 GUGAGGUCUCCGGACGUGAUCACUGUGA

20 ncRNA

3429 CAAAGCAUAAAGGACCCUAUGUCAAA

2

1 transposon

Unknown

RR50960

3430 GCACGUGACACGAGAGACAAAUGGC

20 transposon

LINE

Rt1b

3431 CCGAACUUGAGAUCGCCCCUGGACGUACC

2

2 coding gene3432 ACGAGCGCACGUGUUAGGACCCGA

2 no match

3433 CACCAAGAUAAUCAACCCGUGUUA

20 transposon

LINE

Cr1a

3434 AGAUUCUUGAGAAUUUGGACGCCGUU

2

0 transposon

LINE

Cr1a

3435 ACCCUGAACGCGCCCGAUCUCG

2 no match

3436 UACGAAUUCAACGAGGUAUGGCA

20 repeat3437 UAAACCAUUAAUGCUGUGCCCAAA

2

1 transposon

LTR

HMS-Beagle

3438 ACUACUGGACCAGAUGAUAGAGGGC

20 transposon

Unknown

RR50960

3439 CCUCUAACUGGAACGUACCUUGAGC

20 ncRNA

3440 CGAGAGCAUAUAAUGCCCCGUAGGUUG

20 transposon

LINER1-element3441 UCAGCACCAUGGACGAGAUCUCCUCCGG

2 no match

3442 CCAGAACGUGUAUUGCUACCAACG

2

0 transposon

DNAH

3443 GAGAUUCCCACUACGGCCGGGGGCAU

2 no match

3444 CACCAAGAUCAUCAAACCCGUGUUA

20 transposon

LINE

Cr1a

3445 ACCCUGAACGCGCCCGAUCCCGUC

2 no match

3446 UCUGCAAGAAGCCCAAACGUGAACCA

2

0 transposon

Unknown

RR50960

3447 AGAACGAUGACGAUCCCACGGCUGG

2

0 transposon

LTR

ninja-Dsim-like3448 AUGUCGAGCUAAAGGUGACUGGGU

20 coding gene3449 AAAGGACAUCAACGAGACUCCGUCA

2 no match

3450 AACCUAAGGACGAGAGAGCUUACAGAG

2

1 transposon

3451 CACUUGAUCGAGUGUCUGCAGGGCAAA

2

1 coding gene

CG3180-RA¦RpII140

3452 CUCAGCGAUCUAUGGGGCAAGUCAA

2

1 coding gene

CG42398-RA¦SteXh:CG42398

3453 AGGAAGGCAGCAGGCGCGUAAAUUAC

2

0 ncRNA

3454 GCGAAACAGAGAGAAUGCCACCCGAA

2

0 transposon

3455 CCACUUUCAUGCUUGGGAUUGUGAA

2

0 ncRNA

3456 UGAUUUGGAUGACAGAAGAAGGUGUA

2

1 transposon

LINE

Doc2

3457 AAGGUAACGAUGGAGUUUGACGGC

2

1 transposon

LTR

flea

3458 UAAUAAUAAUAAAUAAAAGGUGACCGU

2

1 AT-chX

3459 GGAAAACCUGAAGAUGAUCCUGAGUC

2

0 transposon

LINE

Helena3460 ACGGUACCCGGAGAAGAAGCCCCG

2 no match

3461 CGUAAAACAAUUCAAGAUCUGGCC

20 transposon

LTR

blood

3462 AAAAAACCUGAAGAUGAUCCUGAGUC

2

2 transposon

LINE

Helena3463 UCCCCUGGACCUGUACUGACGCUCAUGC

2 no match

3464 GGGGACGUAGCUCAGUGGUAGAG

2

0 ncRNA

3465 UAUGUAGGGGCGGUGCAUUCGAGA

2

0 transposon

3466 UACGAUUUCGAGUACAAAGCGAACA

2

0 repeat3467 ACUCGCCGAAUCCCGGGGCCGAGGGAUC

2 no match

3468 ACCAAAGCUUUUGGGCUCCGGGGG

20 ncRNA

3469 UCCGAAGUGACAGACCGAAUCGCA

2

0 transposon

3470 UGGUGCAUGGCCGUUCUUAGUUCGUGGA

2

0 ncRNA

3471 GGCCCAGCGUCGUUAUGCCAACCAGC

20 coding gene3472 AGCUUCAUCCAAGCGAACUGUGCCCGAU

2

1 transposon

LINER1-element3473 ACAUAACGGAACCGCUAGCAGAUCGC

2

0 transposon

LTR

opus

3474 GCGACGUCGCUUUUUGAUCCUUCGAU

2

0 ncRNA

3475 GGUGAGCCCGUUCGGACGGUUC

2 no match

3476 CAGUCCGAAACACACCCCCCGAUUAA

2

0 no annotation

3477 GAUACUCGAAGAUACCACGGUGAA

2

0 transposon

LTR

ninja-Dsim-like3478 UUGUGUCCCGGGACCCACCAAAUUGUGA

2

0 transposon

LINEbaggins

3479 AAGGUGCAGGUGGACUACAAGGG

2 no match

3480 AGGGUUGACAGGACCAAAGACACUAGA

20 Su(Ste)3481 GCCGGAGCGAGGAGGAGGACUAGC

20 Su(Ste)3482 AGAGCAUAAAGACGACGAAAGUGACU

2

1 transposon

3483 AAGCACCGUUUCCCGUCCGAUCAA

2 no matchrRNA

CG42398-RA¦SteXh:CG42398

SAR̲DMrRNA

CG7008-RA¦Tudor-SN
LINE

G

rRNA
Simple̲repeatIrRNA

AT-chX-AtRNA
LTR

Stalker4
RSP
rRNA

LTR

QuasimodorRNA
CG6276-RA¦CG6276

rRNA

Su(Ste)Su(Ste)LINE

Doc3

3484 UGCUUAGUAUCCACUUGCGAUUCCGGC

20 coding gene

pseudogene

3485 GGUCAACGAGGCCGAGAAGUACCGCAA

2

0 coding gene

CG4264-RA¦Hsc70-4

3486 AAGUGUGUAAGACAGAUUGAUAGC

2

0 ncRNA

3487 CGUUUCAUGAGGAAUGGGCCCAGUG

2

0 transposon

3488 AUCACGAUCGAGAACGACAAGGGA

2

1 coding gene3489 AAGAAAUGGAAAUAGGAGUAAUCUG

2

0 transposon

LTR

rooA

3490 UCGCCGAAUCCCGGGGCCGAGGUAGC

2 no match

3491 CCCAACUGUGAGGGGAUCCUCAA

2 no match

3492 AGAUGUCCGGGCUGCACGCGCGCUAC

2 no match

3493 AGAUACUCAAGACUGGACACGAU

2

0 transposon

LINE

Circe

3494 UGUGCUAGAAGACGAUUUUCGGGC

20 transposon

LINE

Cr1a

3495 GAGUACUUCAGCCAGACACUGGAUG

2

1 Su(Ste)

Su(Ste)3496 CGAGCGCAACGUGCUCAUCUUCGAC

2

2 coding gene

CG4264-RA¦Hsc70-4

3497 CAGGUAGGGAGUUUGACUGGGGC

20 ncRNArRNA

3498 UUGGGAACACCGCGUGUUGUUGGCCUC

20 ncRNA

5SrRNA

3499 GACGCCCACCCAUUGGAAGCAAACGGU

20 coding gene

CG6563-RA¦Art3

3500 UGUUUUCAUCGUUAGACGGCUCGGGCG

22 no annotation

3501 CAAACCAAUCCCAACCAAACCCAU

2

1 transposon3502 UCCGGAUGUGCUGACCCCUGCGA

2 no match

3503 CUACGUCCGUUGGAUUAUGCCUGA

2

0 ncRNA

3504 CAGUCCAAGAAGCUCUGCAGUUUCACCU

2

1 transposon

LTR

GATE

3505 UUCUUGCGAGGGGAUUUGUAUGGGUG

20 transposon

LINE

Doc

3506 GUCUUAGGGAUUGGCUAUGGUCUAGAA

2

0 transposon

LINE

G2

3507 AGUGACGCGCAUGAAUGGAUGAAC

2

1 ncRNA

3508 UUCGAGAGAGCCUGGAGCCACCACU

2

0 transposon

DNA3509 CAGUCCGAAACACACCCCCGAUUAA

2 no match

3510 CUCGCGAUAAUUUGGUCAUUGGACAA

2

0 transposon

LTR

3511 AGCUCCGAAGCACUAAGGCCCACC

2

1 coding gene

CG18455-RA¦Optix

3512 UGUUUCAUCGUUAGACGGCUCGGGCGA

2

1 AT-chX

AT-chX-B

3513 ACUCGCCGAAUCCCAGGGCCGAGGG

2 no match

3514 GCACCCAGAGGAGAGCAGAUGAGAGC

2 no match

3515 ACCGAAGAAAACAAAGCCUCCGCCAA

2

0 transposonLow̲complexity

F-element

3516 AAGCUUCAUCCAAGCGAACUGUGCCCGA

2

1 transposon

LINER1-element3517 CGCAUAAUCAAAGCAUCCGAUGACGA

2

0 transposon

LTR

McClintock

3518 GAAACCAAAGCUUUUGGGCUCCGGG

20 ncRNA

rRNA

3519 UUCGUGGAGUGAUUUGUCUGGUUAAUU

20 ncRNA

rRNA

3520 GUCGGUCCUGAGAGAUGGGCUAGCGC

2 no match

3521 CCAGACGUAAUACUCCACUACCCCGG

23522 AAGGAUCCUCAACUGUGAGGCAA

2 no match

3523 UAGGCAAACUAGGUGGGUCCCGGGGCA
3524 UGUUUCAUCGUUAAACGGCUCGGGC

rRNA
LINE

G2
CG18743-RA¦Hsp70Ab

LINE

G2
rRNA

rRNA
1360
opus

2 transposon

LTR

HMS-Beagle

2

1 transposon

LINEbaggins

2

1 AT-chX

AT-chX-B

3525 AACGCGAAGAUGAUAAACCCCAUGUGG

20 coding gene

CG6612-RA¦Adk3

3526 CAAGAGUUCCCGUGGUAGGCAGUAG

20 ncRNA

3527 UACGACGAGAACGAGAUCAGCGCGU

2

1 transposon

LTR

frogger

3528 CCACCCUGAACGCGCCCGAUCGCGU

2 no match

3529 CCCGAAAGCAGACGAGGUAACGUACU

2

1 transposonLow̲complexity

F-element

3530 ACGAACCGAAAAUCCUUUACUGGA

2

1 transposon

LTR

DM88

3531 AAUAGUAAGAAGUUCAACCGGUGA

2

0 transposon

LTR

invader2

3532 CCGAGGCCCUGUAAUUGGAAUGAGUACA

2

0 ncRNA

3533 AACCAUAUCGGACGACGCAGCGCAC

2

0 transposon3534 UGGCUUUGAGAGGCGCCGUAGUU

2

0 no annotation

3535 CGGCGCGAGCCCUGGGAGGAGUU

2 no match

3536 CAAGAUAUGACCAAAGUCAAAGACAC

23537 ACCAGAAAGCACCGUUUCCCGUCCGAUC

2 no match

3538 AAAACCUUCGUAGACGACCUGCUU

2 no match

3539 CAAGAUAUGACCAAAACAAUGCAACG

2

0 no annotation

3540 GACAUAAACAUCCGCAGCCGCAUU

20 transposon3541 CUUGUACCGACGACAGAUCUUUCAA

2

0 ncRNA

3542 UAUCCUGAGAAUCGAUUCGCAAGAAGA

2

0 transposon

LINE3543 AGAUGAUUUAAUUCUAGCGUCCCAGU

2

1 transposon

LTR

3544 GAUGCCGAAGUGGAGAAGGGUUC

2 no match

3545 GAAGCUGAACGCGCCCGAUCUCGU

2 no match

3546 CUGGAGUACAUCAGCCAUACACUGGA

23547 UGAUCGAGGCCCAGCCCGUGGACGGUGU

2 no match

3548 UAAGAGAAUAUGCAAAGGAAGUUGGCCC

20 transposon

LINE

Cr1a

3549 UUAGUGCCAACGACUUUACCCGUAAAC

2

1 transposon

LINE

F

3550 GAUUACGUCCCUGCCCUUUGUACACA

2

0 ncRNA

3551 UACGAAUGAUGUUGGCUCCAAGAG

2

0 transposon3552 UGCUUGGACUACAUAUGGUUGA

2

0 ncRNA

3553 CUUCGGGAUAAGGAUUGGCUCUG

20 ncRNA

3554 CCCAAACUUAGCACCAUUGCGUAAGGAA

2

1 transposon3555 AGCAACCGAUUUUCGAUGUGGAGACUA

2

0 coding gene3556 AGCUCUCGAAUGUAUGCCCGAUA

2

1 transposon3557 GACGCGCAUGAAUGGAUGAACGAGAU

2

1 ncRNA

3558 GCUUUGAGAGGCGCCGUAGUUACCAC

20 no annotation

3559 CAAAAGGGCAAAUGCUGACUUGA

20 ncRNA

rRNA

3560 UUCGGGAUAAGGAUUGGCUCUGAAGA

2

0 ncRNA

rRNA

3561 GCGAUAACGAACGAGACCUUAACCUACU

2 no match

3562 UCUCAUCGUCGUAGAACAAGCCGA

22 Su(Ste)3563 GAAGGGGGGCUCGAAGAUGCGGGGAA

2

1 transposon3564 GAGGUCUCCGGACGUGGUCACUGUGU

22 ncRNA

3565 UGCCCCUGCCGAACCCAUGUCCCUU

2 no match

3566 AGAGAUAUGACCACGCGGGAGGU

2

1 transposon

7SLRNA-RA

rRNA
LINE

Rt1a

LINE

F

LTR

QuasimodorRNA

2 Su(Ste)0 transposon

Cr1a
1731

Su(Ste)

rRNA
LINE

Cr1a
rRNA
rRNA

LINE

Circe
CG8517-RA¦CG8517

LINE

R1-elementrRNA

Su(Ste)
LTR

opus
rRNA

LTR

rooA

3567 GUGGCAUGUUUCCGGAUUCCCGACAGC

2

1 ncRNA

3568 UUCAAGAACAAACGAUACUGUUCGGC

2

1 transposonalphagamma-element3569 GCGGCAACAAUCCUGUGAUCCGGAGA

2 no match

3570 UCUCAUCGUCGUAGAAUAAGCCCGA

2

1 Su(Ste)

Su(Ste)3571 AGGGCGAAACCUCUGAGAGUUGUGGC

20 coding gene

CG7816-RA¦CG7816

3572 ACGGGAAAACUUACCAGGUCCGAAA

2

1 ncRNA

3573 UUUGCAAAAACGAGAGCGAUAGAGUC

2

2 transposon3574 UUUCCCGAAAUCCGAGUGAAUAUGG

2

0 no annotation

3575 AUGAGAGACAUAUGCAGAGCGGGU

20 transposon3576 UGUCCUGAAAGUAGUUGGCAGAGGAAC

2 no match

3577 GCGAUCCACUGAAGCUUAUCCUUUGC

20 ncRNA

3578 GAGAGAUAUGGUAGAUGGGCUAGAA

2

0 ncRNA

3579 UUCAAACUGAAACCGAGGAUAGCCA

2

0 transposon

3580 AUCUAGGACUACCAUGGUUGCAACGGGU

20 ncRNA

3581 UACUCGAAGACACCACGGUGAACG

2

1 transposon

LTR

3582 GUCGGGGAGGCGGCAAUAUC

2 no match

3583 CAGAGGAAUCAGGACCCGCAUUCUGA

2

0 transposon

LTR

3584 GCGAUACUUGAGGGGCACAGCUGA

2

0 transposon

LTR

DM88

3585 AUGGAACACAUAGGGGCUUCGAGGAAA

2

1 transposon

LTR

HMS-Beagle

3586 CGUUCAAGGACCACGCGAGCCACGCCAU

2

1 transposon

LINE

Rt1b

3587 CCCUGAACGCGCCCGACCUCGUC

2 no match

3588 UAGACAGAAAAUAAGGGGACACGCC

20 transposon

LTR

opus

3589 AAUUCAAGGACAUUGCCAGGUAGGG

20 ncRNA

3590 AACUGAAUGUGGAGACGUCGGCGCGAG

2 no match

3591 UGUGAGACGAGUAAUAUGAGCGCCCAGAG

2 no match

3592 AAAGCCUGAAGAUGAUCCUGAGUCGC

2

1 transposon

LINE

Helena3593 GAGUCAAACAUCCAAGUACCAGAGCA

2

0 transposon

LTR

frogger

3594 GAUGUCGUAUCACCCAGGACGUCCGAA

2

1 transposon

LINE

INE-1

3595 CAUACCAGAAGUUAGAUGUGAAGAGCC

20 transposon

LTR

gypsy123596 ACGCCCGACGCGCACUGUUAUCCAGUUC

20 coding gene3597 AAAGCAUCGCGAAGGCCCGCGGCGGGU

2 no match

3598 UAUGGCUCUCUCAGUCGCUUCCUGGGA

2

1 ncRNA

3599 UUGACCUAUAUUCAGCAGAUUAUCCCG

2

0 transposon

3600 UAGUGGCUCAGAAAAGUAAAUAUUCG

2

0 no annotation

3601 GACGAAAUAAACAAGCACUCGAGC

23602 AGAUUCUUGAGAAUUUGGACGCCGU

23603 CAAGCUAGACUAUGUAUCCCCGGGG

LINE

G2

rRNA
LTR

micropia

LINE

G2
rRNA
rRNA

LINE

Doc2
rRNA
ninja-Dsim-like
297

rRNA

CG4750-RA¦loopin-1
rRNA
LINE

G2

0 transposon

Simple̲repeat

I

0 transposon

LINE

Cr1a

2

1 transposon

LINE

Doc

3604 ACAAACAGUACACCUACUAGCCCAUGUU

2

0 transposon

LINEbaggins

3605 CCUCAUUCAAAGCCAGCUGGAUGCC

2

1 transposon

LINE

G

3606 CCCGAAGAACAAUUUUACCUACAAGACC

2

0 transposon

LINE

G6

3607 CGAAUCAACAAAUUGCGCCGAUAU

2

0 coding gene3608 AAACGGGGUAGGUCCCUCCCUGGGUGGCA

2 no match

3609 ACGACUCGGGUAUUACCUUUUCGU

2 no match

3610 ACUUCAUAACCGAGCGACUGUUCAAU

23611 AAAUAGAUCCUGAAACCGCGUGCUUAC

2 no match

3612 UAACUCGAAACUUUUGCCCCCCGAAU

2 no match

3613 AAAAUCUGAAGAUGAUCCUGAGUCGC

23614 GCAACAGAGGAGAGCAGAUGAGAGCA

2 no match

3615 CAAUACUGUAUUCGCUGGACCUU
3616 ACAACCCUAAAAGAUUGGCUACGUG
3617 ACCACCCUGAACGCGCCCGAUCUCGUUC

2 no match

3618 GAGGAGGAUGAUGAUGAUGAAGAG

2

0 repeat3619 UUGGAUUGCCUCUAGACCGGAAGCUC

22 transposon

3620 UCUGACGAGAACUCGAGCCGCGUAGCCU

2

0 no annotation

3621 GCGAACGUUGCGAUACCAGUCCUU

23622 CGGGACAUGGUGUCGGACCGACUUGGGA

23623 CCCCUGGACAACCCACGUCCCUAUGCUA

2 no match

3624 UACAAUGAUCUGAUCGGGUUUUUCU

23625 AGUCCAAUCCGACGAUACCAGGCUUU

2 no match

3626 UGCACUAAUAUAAGCCCUGACGUCCGU
3627 UGCUAGAAGACGAUUUUCGUGCCGA

CG41545-RA¦CG41545

2 transposon

LTR

GATE

1 transposon

LINE

Helena2

0 transposon

LTR

Burdock

2

1 transposon

LTR

mdg3
(CGA)nLINE

G

0 transposon

LINE

INE-1

0 transposon

Simple̲repeat

I

0 transposon

LINE

Cr1a

2

1 transposon

LTR

G4

2

1 transposon

LINE

Cr1a

3628 AACCAAGCUAAAGUACAGAUCGAA

2

0 transposon

Unknown

RR50960

3629 AGCGAAUGAUUAGAGGCCUUA

20 ncRNA

3630 ACCCAUUACAUCCUAUACGGUCAUU

2

0 transposon

LTR

GATE

3631 UGCUCUCGAAUGUAUGCCCGAUAUG

2

1 transposon

LINER1-element3632 GUCCGAGGCCCACUUCGAUGAGUACGA

2

0 coding gene3633 ACCCUGAACAAUACACUACACCGCAG

2

0 transposon

LTR

mdg3

3634 UAUCGAGAAACUUAUCGACUGAUCGAC

2

0 transposon

LTR

mdg3

3635 UGCUCUCGAAUGUAUGCCCGAUAUAAA

2

2 transposon

LINER1-element3636 GGUUCCUUAGAUCGUUAACAGUUA

20 ncRNA

3637 UGAUCCUGAAGCCGGUGUUCGACAU

2

1 Su(Ste)3638 CACCAAGAUCAUCAACCCGUGUUAU

2

0 transposon

LINE

Cr1a

3639 UGAUUCAUCCAGGGAAUGUCAGCGCCG

20 transposon

LTR

ninja-Dsim-like

3640 CCGAACUUGAGACCGCCCCUGGAA

2

1 Su(Ste)3641 AAUGACUGUAAAUUGAUAUACCG

2

0 transposon

LTR

G4

3642 UUGUAUGUUAGUUUCAGUUUCAAA

2

0 transposon

LTR

HMS-Beagle

3643 CGCAAGCUUAUUUCCCGGGAUGUUG

22 transposon

LINE

Fw2

3644 CUCGGGUCAAUAGGACUGGGCGGCGG

2 no match

3645 UUGUCGGCUAGCUCAUUUCCCGGGAU

2

1 transposon

LINE

Fw2

3646 GCUUUCAACACCGCCAGAUGGCCCGU

2

0 transposon

LINE

F

3647 AUCCCACGGAACACCCGAGCAAUGCCACC

2

0 transposon

LINE

G2

3648 AUGUCAUAAAAUAGAUAACCUGAUUG

2

1 transposon

LINE

Cr1a

3649 GAGGCAAUCACCGAGAGCAUCAACGC

2

1 transposon

LINE

F

rRNA

CG6770-RA¦CG6770

rRNA
Su(Ste)Su(Ste)3650 CACGAUGAUCGAUGACGAGCUACGAA

2

0 transposon

3651 UUCCGAGGAACCAACUGAUCCAGCU

2

1 Su(Ste)

LTR

ninja-Dsim-like3652 UUACCAGGUCCGAACAUAAGUGUGUA

20 ncRNA

3653 UGCGAGGAGGCCCGUAUUACUGUCACA

2

0 transposon

LTR

ninja-Dsim-like3654 CCCUCAAACACAGCAGCCGAUUCCGACC

2

0 transposon

LINE

G2

3655 GAGAGUGGACGGGAGCGGCGGGGGCGGC

2 no match

3656 GACCGGCAACGACGUUCCACAUUA

2 no match

3657 CAAGCCAAUCUAGACGUACGGAA

2

0 transposon

LINE

G2

3658 CAGGUACGGACCAAUGGCACAAU

20 repeat3659 AGCUCAACAACGUGCGAGAGGUGCAGCC

2

0 transposon

LTR

ninja-Dsim-like

3660 CAACGGGAUACCUCAUACUCGAGU

2

0 transposon

LTR

micropia3661 CAGACAGAGACGGAGCUUUCUCCAGUAU

2

1 transposon

LTR

3662 AGGUCUGUGAUGCCCUUAGACGUUC

22 ncRNA

3663 AACGCGCCCGAUCUCGUCUGAUC

2 no match

3664 GAAUCAGUUAACUUCCCGACAUCAGA

2

0 transposon

LTR

invader63665 AGAUACUGAAACGAGUUGGCAUUCUU

2

0 transposon

DNA

RR51476

3666 ACUCGCCGAAUCCCCGGGGCCGAGGGAG

2 no match

3667 GUGGAGCCGGGCGUGGAAUGCGAGUGUC

2 no match

3668 CUACGAGUGGCUGGACAAAAUGGUCG

20 coding gene3669 UGCAACUCGAGCGACGCCGUCUCUGC

2

0 transposon

LTR

Quasimodo

3670 GUACAAUAGAUCCGACUGGGUAA

2

1 transposon

LINEbaggins

3671 CCCGAUGAGAAGAAUGGCCCGUAAAAGC

2

2 transposon

LINE

RR497833672 AACCCUACUGAUGAUGUGUUGUUGCC

2 no match

3673 UAGAGAUGCCCGCUGUACUGUCGAAA

2

0 transposon

LTR

diver23674 CGCUCUCGAAUGUAUGCCCGAUA

2

1 transposon

LINER1-element3675 AUAGGGACGGUCGGGGGCAUCAGUA

2 no match

3676 CCGGAGUGGACUGCCGUUAUCAGCCC

20 ncRNA

7SLRNA-RA

3677 CAAGAUAUGACCAGAGCAAAGCAACGU

20 Su(Ste)

Su(Ste)3678 CCCGCGGAAAGACGGAAAGACCCCAUGA

2 no match

3679 UACGUCCGUUGGAUUAUGCCUGAA

20 ncRNA

3680 CCACAGAGUACGGGGCUUACUAAAGUC

2

0 transposon

3681 CGAGAGGUGAAAUUCUUGGACCGUCG

20 ncRNA

3682 ACCGGAAACAUUAGUCGAGGCGUA

20 transposon

LINE

Rt1b

3683 AUCCUCAACUGUGAGGGAUCCUAA

2 no match

3684 GAUCCUCAAUGUGAGGGGAUCCUCAA

2 no match

3685 AGCGUGUGCCUACCCUACGCCGGC

2 no match

3686 AAAGACGACAAAUGGACUAAGCCUAAA

2

0 transposon

LTR

rooA

3687 CCAAACUUAACGUAAACACAGCUUCCGC

2

0 transposon

LTR

HMS-Beagle

3688 UACAUCAGUAAAUUACGGACCCCG

2

0 transposon

LINE

McClintock

3689 ACCGAAGAGACGCCGGCCGCUAC

2

0 transposon

LTR

G4

3690 UACAAUUACGUCACGAGCAACACAGAU

2

0 transposon

LTR

Dm88

3691 GCACACAGAGGAGAGAGAUGAGAGCA

2 no match

3692 UAAUAAAACAACGACCCGCUACCGGAG

2

0 transposon

LTR

opus

3693 AUCCGCAGUAGGUCUCCAAGGUGAA

2

2 ncRNArRNA

3694 GCGAUCAGAUACCGCCCUAGUUCU

2

0 ncRNArRNA

3695 GCCGAAUCCCGGGGCCGAGGGAGCGA

2 no match

3696 ACCCUUGAUAGACGGUUGACUUUCG

2

1 transposon

LINE

Rt1b

3697 AGCCGAACGUAGUCUCUCGAGAGCGA

2

1 transposon

LTR

invader13698 UGCUUCAUCGUUAGACGGCUCGGG

2

1 AT-chX

3699 CCCGAAAAAAUCCCCCGGCUGCGAC

2

0 transposon

3700 CACACAAGGUGGUCAUGAUUACGG

2

0 coding gene

3701 UCGUCUGUGAAGGGAUCCUCAA

2 no match

3702 GCGUUCGUUGACGUUGAUGGCUGC

20 transposon

3703 CUGGUUGAUCCUGCCAGUAGUUAUAUG

20 ncRNA

3704 CGGGAACACCGCGUGUUGUUGGCCU

2

1 ncRNA

3705 CCCGAAAAAUCCCCCGGCUGCGAC

2

1 transposon

LINE

F

3706 GCUCCGAAAACAAGGCCCGUCGCUAA

2

0 transposon

LINE

G6

3707 ACCACCCUGAACGCGCCCCGAUCUCGU

2 no match

3708 AGAGCGUCCGACGAAUACCCUGGGGG

2 no match

3709 AGCAACUGAACCAAGAAAAUCACCUGC

2

0 transposon

LINE

Doc

3710 AAAGCCGAGCACUACUAAUUGCCC

2 no match

3711 UUUUCAUCGUUAGACGGCUCGGGC

2

1 AT-chX

3712 UCCUGGGUCACACGGAGGCCGACG

20 coding gene3713 CUGAUGAAAAAUAUGUUGCCGUUU

2

0 transposon

LINE

TART-A3714 CCGAACUUCAUACAGAUGCCUCUAA

2

0 transposon

LTR

flea

3715 UGGGCCCGAACCCUUCUGGUGUUUA

2

2 transposon

LINEbaggins

3716 ACCAACGGGAUACCUCACACUCGAGUAA

2

1 transposon

LTR

micropia3717 GAUGUGUUGUUGCCAUGGCAAUCCUGC

2 no match

3718 GCGUAUAACAACUACUUCUCGGUGA

2

0 transposon

LTR

accord3719 AGUAACUUCGGGAUAAGGAUUGGCUCU

2

1 ncRNA

rRNA

3720 GACUGGCGGAUAACCCGGUUCAAGUU

2

0 coding gene

CG9970-RA¦CG9970

3721 GGCAACUGUGGGGGGAUCCUCAA

2 no match

3722 UUCCGAGGAACCCAUUGAUCCAGCUGC

2

0 no annotation

3723 ACGACGCGAGAGGUGAAAUUCUUGGACC

20 ncRNA

3724 ACAGAGAGAAGACUAACCCGACGAGA

2

1 no annotation

3725 UCCUGUAGUACGAGGUCAUGCCUAGAAA

2

0 transposon

LTR

opus

3726 GCCACCGAGAUAUGAGGACGACGA

2

0 transposon

LTR

ninja-Dsim-like

3727 UAGGACUUAAAGAUGAUGAACCCAUU

2

1 transposon

DNA

NOF

3728 AUGCCCGAUGUCCGCGAGAUUGC

2

0 transposon

LTR

opus

3729 GAGACCCGUCGCCGCGCUCUCCCCCUC

2 no match

3730 UACAUAUGGUUGAGGGU

20 ncRNA

3731 ACAUCACAUAGAAGGAAGAUCCAGCGA

2

0 transposon

3732 GGAUCGUGCUGCGGAUAUUACUGCU

20 coding gene

Su(Ste)rRNA

LSU-rRNA̲Dme

297
rRNA

CG2915-RA¦CG2915

rRNA
LINE

bagginsrRNA

AT-chX-B
Low̲complexity

F-element
CG6230-RA¦CG6230

LTR

HMS-BeaglerRNA
5SrRNA

AT-chX-B
CG3356-RA¦CG3356

rRNA

rRNA
LINE

G2
CG17945-RA¦Mst84Dc

3733 AUCCCAACUGUGAGGGGAUCCUCAA

2 no match

3734 GAAUGAGUUAAACGAGAAUGUAGAGCA

2

0 transposon

LTR

micropia3735 AUGGAACACAUAGGGGCUUCGAGU

2

1 transposon

LTR

HMS-Beagle

3736 AUCGUCUAGUGGUUAGGACCCCA

20 ncRNA

3737 CAGGAUUUUAAUUUUCAACCCGAACA

2

0 transposon

3738 GAAGGCCCGCGGCGGGUGUUGACGCGAU

2 no match

3739 GCACACAGAGGAGAGCACGAUGAGAGCA

2 no match

3740 UAGAUGUCCUGGGCUGCACACGCGCUAC

2

1 ncRNA

3741 GAAACCAUCAGACGCCUCCAGAGGAAA

2

0 transposon

3742 GCCGGUGAUCGAUAGUUCCUCUGGC

20 repeat3743 GUCAUGCGAGGCGAACCGGGUGAACUG

2 no match

3744 UCGGAAAUUAAACGAGAAGACUGAC

2

0 transposon

3745 UCUCAUCGCCGUAGAACAAGCCCGA

2

1 Su(Ste)3746 CACCAAGAUAAUCAACCCGUGUU

2

0 transposon

3747 UUCGUUCCUCGGGAUCAAGGGCAA

20 coding gene3748 AGCGCCGCGGAGCCUCGGUUGGCCU

2 no match

3749 UCUGAAACAAGAAGAGGACGACGAUC

2

0 transposonLow̲complexity

F-element

3750 AACGACACGCUUUGUUUUACCCA

2

0 transposon

DNA

RR514763751 AAGGGCUGGGUCGGUCGGGCUGGGGCG

2 no match

3752 UAUCCGUGAACUACAUCCCAACGACC

2

0 no annotation

3753 UGGGGACACCGCGUGUUGUUGGCCU

2

1 ncRNA

5SrRNA

3754 UACCACCCUGAACGCGCCCGAUCUCGUC

2 no match

3755 AAUGAUAUGCACCGAAACUAUAUGAG

2

0 Su(Ste)

Su(Ste)3756 AAGGGCCUAGAGGAUCUCUGUUGC

20 coding gene

CG12700-RA¦skpD

3757 GACUUAUAUCCGAGGCCCUGUAAU

2

1 ncRNA

3758 UUCACUAUUAAUGGAGACCGCUAUGU

2

0 transposon

3759 GCGAUCAGAUACCGCCCUAGUU

20 ncRNA

3760 CGAGAUCAAACCGCCGAGCUGCAACAA

2

0 repeat3761 GCAAUCAUCCAAGGCUGAGAUCCG

2

0 transposon

3762 GUGAGGCAGGAACCGUACCCCAAAC

2 no match

3763 ACUCGCCGAAUCCCGGGGCCGAGUGA

2 no match

3764 UCUGCUGGCCUUCGAGUUGUACUA

2

0 coding gene3765 CAAUCUCAGAUAAAAACCCGAACGUAG

2

0 transposon

3766 GGCAAAUUAGAUCCGUAACUUCGG

20 ncRNA

3767 GCGUAUUACCGGUGGAGUUCUUAUA

20 ncRNA

3768 UCCCCUGCGUAGGCGCUGAGCUCUUA

2

0 transposon

3769 AUUGGCGAGUGACCGAUAGCGAAC

2 no match

3770 UCACCAAGCGUUGGAUUGUUCACCC

20 ncRNA

3771 UAACCGAGAAACGUGUUGACAUCUG

2

0 transposon

3772 UCGCCGAAUCCCGGGGCCGAGGGAGUC

2 no match

3773 UGAGACUACGAACGGAUUGCGGAC

2

1 no annotation

3774 UGCACCGACAAAGGAGUAUUGCCAGA

23775 GCCAAUUACAUUAGACGAGACGGCCCU

23776 GACCUCAGAUCAGACGUGGCGACCCG

2 no match

3777 UAACGACCCAUUUCUGUUACUUUG

2

0 repeat3778 UUCCGAGGAACCAAUUGAUCUAGCUGC

2

1 Su(Ste)3779 UCUAACAAAAAUUCGAGAGAGCCUGGA

2

0 transposon

3780 ACCGAGAAAGCAGUAGCGCUGGGUU

2 no match

3781 CGCCGAAAGACCAAGGGUUCCUGCG

2 no match

3782 UUACGAGCUCAGCGAGGUAUGACAU

2

0 repeat3783 UUCGAGAGCAUAUAAUGCCCCGUA

2

0 transposon

LINER1-element3784 CCUGCAGAGAACGCACCCGCUUGUA

2

1 transposon

LINE

TART-A3785 GUCAAUAAUAAUAAAUAAAAGGUGACC

2

1 no annotation

3786 AGCUUCAUCCAAGCGAACUGUGUCCCGA

2 no match

3787 AGAAGCACCGUUUCCCGUCCGAUC

2 no match

3788 UACGAGGAAGCAGUGGAGGAUUGCU

20 transposon

LTR

ninja-Dsim-like3789 AAUAGUGUGUUAGAGAGAGAUGAC

2

0 transposon

LTR

Max

3790 ACACAUACAAAUAACAAUACUGCCAUGC

20 ncRNA

3791 GGUUCCGGGGGAGUAUGGUUG

2 no match

3792 AUCCUCAACUGUGAGGGGAUCCUCAG

2 no match

3793 UUGGGCGGCGAGGACUUUGACAACCG

2

0 coding gene3794 AGCCAUGAGAAGAGGAAGAUGAUCGAA

2

0 transposon

3795 CGAGAGUGGACGGGAGCGGCGGGGGCG

2 no match

3796 UGGUUAAUUCCGAUAACGAACGAGAC

20 ncRNA

3797 UAAGAUCGGACUCGAGCCUUAGCGA

2

0 transposon

LINE

Rt1b

3798 GCUGAACGUAGUCUCUCGAGAGCG

2

1 transposon

LTR

invader1

3799 AGAGCAGAGAACCCUCUAAUUCGGCC

20 transposon

LINEbaggins

3800 AUUCGAUUCAUGGUGUGACUACA

2

0 transposon

LTR

springer

3801 UCAACUGUGAGGGGAUCCUCUAA

2 no match

3802 ACAAAAGGGUAAAAGUCCCCUUGAU

2 no match

3803 UGCGAGAGGUCCCGGGUUCAUUUCCC

2

1 ncRNA

3804 UGAGAUAUGCUAGCAGACUGGAGU

2

1 transposon

LINE

G2

3805 UGGAAAACCUGAAGAUGAUCCUGAGUC

2

0 transposon

LINE

Helena3806 CAUGCAAGGGAACGUGAGCUGGG

20 ncRNArRNA

3807 CCGCUGGCGGUGUGAUGAGCGUGUU

2

0 coding gene

CG4264-RA¦Hsc70-4

3808 UGACUCUCGAAUGUAUGCCCGAUAU

2 no match

3809 UAUAACGACCGGUAGACCAGCACUAA

2

0 transposon

LTR

McClintock

3810 AUCUCACGGAACACCCGAGCAAUGCC

2

1 transposon

LINE

G2

3811 UUCCGAGGAACCAACUGAUCCAGCUGCU

2

1 Su(Ste)

3812 AGGCGGGGCUAGUGACUGGAGUGA

2 no match

3813 ACAACAAACAACACAUACCCGCUGGCCU

2

1 transposon

3814 GCUUAUCCUUUGCUUGAUGAUUCGA

2

0 ncRNA

3815 GCCGAACGUAGUCUCUCGGGAGCG

2

1 transposon

tRNA
LTR

flea

rRNA
LINE

G
trf

LTR

INE-1
Su(Ste)LINE

Cr1aCG40635-RA¦CG40635

rRNA
DNA

Tc1-2
rRNA
(TTG)nLTR

mdg3

CG12202-RA¦Nat1
LTR

gypsy4
rRNA
rRNA

LINE

R1-element
rRNA

LTR

invader2

0 transposon

LTR

gypsy80 transposon

LTR

opus
trf
Su(Ste)

LINE

Cr1a

SAR̲DM

ncRNA

CG18743-RA¦Hsp70Ab
LTR

Dm88
rRNA

tRNA

Su(Ste)
LTR

GATE
rRNA

LTR

invader1

3816 AAGAACGAAAGUCGGAGGUUCGAA

2

2 ncRNA

3817 GAGUCCAAGAGAUUUGCUCCCGAGGAGA

2

0 coding generRNA

3818 CAAGAGAUGUUGUUGUCGAUGAAA

2

0 transposon

LINE

Cr1a

3819 UGCUCUCGAAUGUACGCCCGAUA

2

1 transposon

LINER1-element

3820 GCGCUAGUCCCAAGACCCAAAUCAGCC

20 coding gene

3821 GGAAAAGAAACCAACCGGGAUUGCCUU

2 no match

3822 GCUCCUGAAGCAGGACUCGCAGAUCCUC

2

1 coding gene3823 AACCAAGCUAGAGUACAGAUCGAA

2

0 transposonLINEjockey3824 ACCCUGAACGCGCCCGAUCUCGUCUGAU

2 no match

3825 UCAACCAGCACGACAAGGCCCAUACGA

2

0 transposon

LINE

G2

3826 ACCAAGAUCAUAAGCCCGUGAUAU

2

0 transposon

LINE

Cr1a

3827 CAGAACGUCAUCGAACCCUAGAGGC

20 transposon

LTR

GATE

3828 AACAGAGAGAAGACUCACCCGACGAG

2

0 no annotation

3829 AGCCAGGAAAGAGCAGAGAACCCUC

2

0 transposon

LINEbaggins

3830 CAAGCCAAAGAGGGAGCCCGGAUC

2

0 transposon

LTR

flea

3831 ACCAAGGCGCUUGAGAGAACUCGGGU

2 no match

3832 AAGACUACUGCCGCCUAUGCUCCC

2

0 transposon

LINER1-element3833 AAGAAUACUAUUUGGGUUAAAC

2

0 ncRNA

3834 GGAACCUCAACUGUGAGGGGAUCCUCAA

2 no match

3835 UGCUCUCGAAUGUGAGGGGAUCCUCAA

2 no match

3836 AUUUGACAGAGUGUGGCUCGAUGGA

23837 ACCGUGGAGACCGGGGUUCGACUCC

2 no match

3838 GCAAUCGUUUUUAGACGAGUAUUCCGA
3839 AUUCCGAUAACGAACGAGACUCAA

CG31359-RA¦Hsp70Bb

CG3330-RA¦CG3330
CG9074-RA¦Mst57Da

rRNA

0 transposon

LINE

Doc

2

0 transposon

LTR

Rt1c

2

0 ncRNArRNA

3840 UCUCAUCGUCGUAGAACAAGCCCGGG

2

1 Su(Ste)

Su(Ste)3841 GGCUCUCUCAGUCGCUUCCCGGG

20 ncRNA

3842 AACAUCGAGAAUACUGCACAGCC

2

0 transposon

3843 UCACAUCGUCGUAGAACAAGCCCGA

2

1 Su(Ste)3844 AAGACAACUAUCCGAUACCGCUUAUC

2

0 transposon

LTR

diver23845 ACCUGGCAGACUGGAAUGGACCGC

2

0 transposonLow̲complexity

F-element

3846 GGCGGGUGUUGACGCGAUGUGAUUC

2 no match

3847 GCGAGAGGUCCCGGGUUCAUUUCCC

2

1 ncRNA

3848 GCCAAUUACAUUAGACGAGACGGCCU

2

1 transposon

3849 CUUCGGGAUAAGGAUUGGCUCUA

2

1 ncRNA

3850 GACAGACGGACAUGACUAGAUCGAC

2

0 transposon

LINE

INE-1

3851 UUCGCAAAAAGCACGGAACGAUCGAA

2

1 transposon

LINE

Doc2

3852 ACAUUCAUAACCGAGCCACUGUUCAAUC

2

1 transposon

LTR

GATE

3853 ACCGAAGAGACGCCGGCCGCUACGU

2

0 transposon

LTR

G4

3854 AGAUGUCCGGGGCUGCACGCGCGCUA

2

1 ncRNA

3855 UACUCGAAGACACCACGGUGAAAGU

2

0 transposon

LTR

ninja-Dsim-like3856 GUCCCGCUGGUCUAGGGGUUAUGAUCCU

2 no match

3857 CAGAUCAACAAAGUACGAUGGGAACCA

2 no match

3858 UUCUGCCCGAACCCUUCUGGUGUGU

2

1 transposon

LINEbaggins

3859 UACGAAAUAAGCUGUCUGAGUUAA

2

0 coding gene3860 GUAAAGGCUUACCAAGGCGACGAU

2 no match

3861 ACCGAAUUAAUCGCGAGGCCGCAAGA

2

1 transposon

LTR

mdg3

3862 CAAGAGUCAAGCCGAUUAUAGUUUAG

2

0 transposon

LTR

diver23863 AAAAUCUCGCGCCGGGCCGUACCCAU

2 no match

3864 AGAGGAGAAGGUGGCUUUGAGAGG

23865 UGCUCUCGAAUGUAGUGUCCCGAUA

2 no match

3866 UGCUACUCGAAUGUAUGCCCGAUAU

2 no match

3867 GUCGAGAAGAAGAUGAAGCGCAA

2

0 transposon

LTR

ninja-Dsim-like

3868 UACUUGUUCCCGGAUAGUUUAGUUAC

2 no match

3869 UUGGGCCCGAACCCUUCUGUGGUG

20 transposon

LINEbaggins

3870 UGUUAUAAAAUCCUACGAUCGGGAGA

2

0 transposon

Unknown

RR50960

3871 CGAGCGUGAUGACUCCUGGGGCAU

20 coding gene3872 GAUACUCGAAGACACCACUGAUGCUGC

20 transposon

LTR

3873 ACGACCAUGAGAGUGCAGCUGAGGU

2

1 transposon

LTR

3874 AGCCAAGAGGAUACUACGAUGGUGCC

2 no match

3875 UCCUUCGAGCGGGAUCACCUGGAU

2

1 transposon

LTR

3876 UUUUUCAUCGUUAGACGGCUCGGGC

2

1 AT-chX

3877 GCGCCGCGGAGCCUCGGUUGGCCUCGGUA

2 no match

3878 UACUCGAUCAAAAGGCCCUGGCAU

23879 AGCGGGGCCUCACGAUCCUUCUGACCUU

2 no match

3880 ACUCGCCGAAUCCCGGGGCUGAGGGAGC

2 no match

3881 GAUCGUCGAAUUUGGGUAUAGGGGC

2 no match

3882 CCUACGAGAUGGAAGCUUAUAUCGC

23883 ACCCUACGGAUGAUGUGUUGUUGC

2 no match

3884 UACUCUCGAAUGUAUGCCCGAUAU

2

1 transposon

LINER1-element3885 AGCUUCAUCCAAUCGAACUGUGCCCGA

2

1 transposon

LINER1-element

3886 GUGUCAAAACCCGGUGGACUGCCGU

22 transposon

LINE

R1

3887 GGAUUGACAGAUUGAGAGCUCUUUCUU

2 no match

3888 CUCCCACUAGAGAGUUGGCCCAGC

20 coding gene3889 ACGAAAUCGAUGUGUUACUGCUCA

2

0 transposon

3890 CUUGUUCCCCGGAUAGUUUAGUUACGUG

2

1 ncRNA

3891 UAGUCUGGUCGCGGGUAGGAGCGGGG

20 transposon

LTR

invader1

3892 AAUUCCGUAAACGAAGCCCAAAGUUCA

2

0 transposon

LTR

Max

3893 AAUUCCGUAAACGAAGCCCAAAGUUCG

2

0 transposon

LTR

Rt1c

3894 UCGAACGAUAAACGGCGCUAACCA

2

0 transposon

LTR

GATE

3895 UCCUGGCAGAGACGGCGUCGCUCGAGU

2

0 transposon

LTR

Quasimodo

3896 UAUUGAAUAACGUACUCUUCGUCCCAGA

2

0 transposon

LTR

3897 UUCCGGAGAGGGAGCCUGAGAGACG

2

1 ncRNA

3898 ACAAACAGAGUUCCCGAAUGAGAG

2

0 transposon

rRNA
LINE

Doc
Su(Ste)

tRNA
LTR

opus
rRNA

rRNA

CG40084-RA¦CG40084

0 no annotation

CG10859-RA¦CG10859
ninja-Dsim-like
1731
GATE
AT-chX-B

1 no annotation

0 no annotation

CG10077-RA¦CG10077
LINE

X
rRNA

297
rRNA

LINE

Cr1a

3899 ACCCUGAACGCGCCCGAUCUCGUUC

2 no match

3900 UGCAUUUCCAAAAUUGACCUCAAAG

2

0 transposon

3901 ACCACUUUCAUGCUUGGGAUUGUGA

20 ncRNA

3902 GGCGAGAUGGGUGACAGCCCCGUACGGGA

2 no match

3903 ACGAGAGAGAUCCGGAUGUCUAUGA

2

0 transposon

3904 UCUCAUAGUCGUAGAACAAGCCCGA

2

1 Su(Ste)

3905 GGAUCCUCAACUGGUGAGGGGAUCCUCAA

2 no match

3906 UUAUUCGUUACGUAGAUUUAGAGUU

20 transposon

Unknown

RR50960

3907 CUGGUCGUUAAAGGGAGUUUUGGC

20 transposon

LINE

R1

3908 GCGACUCGGGGCCUGUCUAGGAACA

2

0 transposon

LTR

opus

3909 AUUCCCCAUGAACGAAAUUCCCAGU

2 no match

3910 AUACCCUGGUAGUCCACGCCUUAAACG

2 no match

3911 UGUUUCACCGUUAGACGGCUCGGGC

2

1 AT-chX

3912 CAGUCCGAAACACACCCCCCCGAUAAU

2

1 no annotation

3913 AAAAACCUGAAGAUGAUCCUGAGUCGA

2

2 transposon

3914 ACCACCCUGAACGCGCCCCGAUCUCGUC

2 no match

3915 CGUUUCAUCGUUAGACGGCUCGGG

2

1 AT-chX

3916 ACAUUCAUAACCGAGCGACUGUUCAAA

2

1 transposon

3917 GACCUCAGAUCAGACGUGGCGACCCGC

2 no match

3918 GGCGAGCGAACCGGGACCAGGCCAGU

2 no match

3919 AACGCGGUCACCGCGUUGGUCACCGGGUGGCCC

2 no match

3920 UAUUGCACUUGAGACGGCCUGA

2

0 ncRNA

mir-312-RA

3921 UGAGGUCUCCGGACGUGAUCACUGUGAC

2

0 ncRNArRNA

3922 ACCACACCCGGGGACAAUGACCUUUU

2

0 coding gene3923 UGCUAAGGGAUCCAGUUGCGAUAAA

2

0 transposon

DNA3924 AAAUCCUCAACUGUGAGGGGAUCCUCAA

2 no match

3925 ACCACCCUGAACGCGCCCGAUCUUGUC

2 no match

3926 AAGAAACGAAAGUGCAGACCCAGG

2

0 transposon

LINE

Doc3

3927 AAAUCUGGAUACUAGGUAUCGACGCCGA

2

0 no annotation

3928 ACCGGAUGAAUAACGAGAACCUACUC

2

0 transposon

LTR

gypsy

3929 GGGGAACUACUGCUCGAGAUAGAGG

2

0 transposon

LINE

Quasimodo

3930 UGGGAAUCCGAGGUGCCGUAGAU

2 no match

3931 AACCACCCUACGCCAAGACUCGUU

2

0 transposon

LINE

G

3932 AGUACCUCGACCAGACGGUGGCCCCC

2

0 coding gene

CG11591-RA¦CG11591

3933 GAUCUGAAUAAUUCUGCGAACGAGGA

2

0 coding gene

CG4916-RA¦me31B

3934 GGGGAUGUAGCUCAGAUGGUAGAG

2

0 ncRNAtRNA

3935 GGCACAAUACUUGUUCGAGCGAACA

20 ncRNArRNA

3936 UUACUGACGAAUUUAGUUACAAGCAGA

2

0 no annotation

3937 AUCAAAAACCAUUCUGAUUUCAACGA

2

0 no annotation

3938 AUGUGAACAGCAGUUGAACAUGGGUC

2 no match

3939 AGUGACGCGCAUGAAUGGAUUAA

20 ncRNA

3940 AAUGAUGUAGAUCGUGGUUCGUGG

2

0 no annotation

3941 AAGAGGGACGGCCGGGGGCAAUCGU

2 no match

3942 UUUCGAGAAGCGAACCCGGCGAACUGAA

2 no match

3943 UGCGAGAGGCCCUGGGUUCAUUUCCCA

2 no match

3944 GAUACUCGAAGACACCACGGUGAAAG

23945 GCAGCCGGGCGUGGAAUGCGAGU

2 no match

3946 AAGGACCGCAUCCAUGUACCGGAGG
3947 CUUGAUAUGACCAGCUUGGACCGAA
3948 GGCGGGGAAGGUGGCUCGGGGGGC

2 no match

3949 AUGUCUAUGAGAUGAACGUAAUGACG

2

0 transposon

LTR

ninja-Dsim-like

3950 GCUGAGAAAAAAACGAAGUAUAACGAAA

2

0 transposon

LINE

Doc

3951 UCCGGCGAUAAACUUCUUGUCCUUCG

20 transposon

LTR

G4

3952 UUCCUUAGAUCGUUAACAGUUACUUGG

20 ncRNA

3953 UAUAUGCUCUCGAAUGUAUGCCCGAUA

2

0 transposon

LINER1-element3954 AACUAAGACAGGGCAUUACGAGUAUA

2

0 transposon

LTR

McClintock

3955 UAGGCGGAUCGUUAAGUCAGAGGU

2 no match

3956 GAGAGAACUCGGGUGAAGGAACUAGGC

2 no match

3957 CAAGAUAUGACCAAAGCAAAGCAAC

23958 UUCGGUCCUGGGCGAAAUCACCA

2 no match

3959 UGAUCUCGAAAGCUAAGCAGGGUC

2 no match

3960 CCCGGAAGCGAUCCCACUGCUGAAG

2

1 AT-chX

3961 CUGACCUGUAUUCGGAUAAUGGA

2

0 transposon

LTR

3S18

3962 ACUGAGACACGGCCCAGACUCCUACGGGA

2 no match

3963 UGCUGUUUACUUCGAGGACAAGGU

2

0 transposon

LTR

flea

3964 UCAAGGUAGUAACUAUGACGAUUUGA

2

0 transposon

LTR

flea

3965 GGACGCGUAGCUCAGCGGGAGAGCA

2 no match

3966 GCAUUCGAGACCCAACGGCACAUCA

2

1 transposon

LINE

Rt1b

3967 CACCCUGAUUGCAGACGCAGACGAGC

20 coding gene

CG34222-RA¦CG34222

3968 CGGUAAGACCCUGAUCGAUGCCCU

2

1 coding gene

CG8280-RA¦Ef1alpha48D

3969 AAGCCGGUGAUCGAUAGUUCCUCU

20 repeattrf

3970 CGGAGAUGGGGUCUUAUGGCUGGAA

2 no match

3971 CUCUUCUUCAUUUCUGUUCAAGGGC

20 no annotation

3972 GAAACCAAAGCUUUUGGGCUCCGGGG

20 ncRNA

3973 GAGAGCGAGAAGAUGUCCGAGA

2 no match

3974 UCGGCCCGAACCCUUCUGGUGUGUA

2

1 transposon

LINEbaggins

3975 CAAGCUAGACUAUGUAUCCCCGGGCAU

2

2 transposon

LINE

Doc

3976 UGGGAGGAGGAAGACGGUUACC

2

0 transposon

LTR

diver23977 AGAGACAAUUGACGGUACCGCACACC

2

0 transposon

LTR

Dm88

3978 CAACUCGGAUGUUAUCAUCAUGCA

2

0 transposon

LTR

flea

3979 CAUACCAACAGUAGACAAUGUUCCGA

2

0 transposon

LTR

accord3980 UACUACAGGAAGUUCAUUCAGGACUA

20 transposon

LTR

opus

3981 UCCGAAGACAACGAGGAGCAGAG

2

0 transposon

LTR

LINE

Circe
rRNA

LTR

ninja-Dsim-like
Su(Ste)AT-chX-B
LINE

HelenaAT-chX-B

LTR

GATE

CG8498-RA¦CG8498
1360

rRNA

0 transposon

LTR

ninja-Dsim-like

2

0 transposon

LINER1-element

20 Su(Ste)

Su(Ste)rRNA

0 Su(Ste)

Su(Ste)AT-chX-A

rRNA

1731

3982 GCAACGAGGCAGCACGGGGUAUC

23983 GGAUCCUCAACUGUGAGGGCAUCCUCAA

2 no match

0 transposon

LINE

BS

3984 AACGAGUCCAAGCCAGGCAGCUAU
3985 UGACCGAACUUGAUUAUUUAGAGGAAG

2

0 transposon

LINE

Rt1b

2

0 ncRNA

3986 GGGGAACUACUGCUCGAGAUAGAGGG

20 transposon

3987 AACGCGAAGACAGAUUCCUGGGUGG

20 coding gene

3988 ACGGCCAUACCACCCUGAACGCGCC

2 no match

3989 AAUAACUCCAGCAGAGACCGUACCCGA

2 no match

3990 CUCAGAUCAGACGUGGCGACCCGC

2 no match

3991 ACGGGAAAAACGCCGUGCGCAUUUUGAC

2

0 transposon

3992 AUGUUUCAUCGUUAGACGGCUCGG

2

1 AT-chX

AT-chX-B

3993 UCCUGAAGCCGGUGAUCGAUAGUU

2

0 repeattrf

3994 CUGAAUGAUGGACUGAAAUGGUCUGG

2 no match

3995 GCAAAGAGAACGCGACCAACUGAA

2

0 no annotation

3996 CCGAACUUGAGACCCCAGCCGCUCG

2

1 no annotation

3997 GGAUCCUCAACUGUGAGGUCAA

2 no match

3998 CCAGCUUGGACCGAACACUUUGAACC

20 Su(Ste)

3999 CGCAAACCCAAAUCGACAAUGCACGA

2

0 repeat4000 AUCCUUCGGACAAAGGCACUGAGUUU

20 transposon

LTR

Quasimodo

4001 ACGGAAUGUAACCGAGCUCUGAGU

20 transposon

Simple̲repeat

I4002 GCGUUCGUUGACGUUGAUGGCUGCU

2

1 transposon

LTR

HMS-Beagle

4003 CCGCUUGGGAACACCGCGUGUUGUUGGC

20 ncRNA

4004 CAAGAUAUGACCAAAACAAAGACAUA

2

2 transposon

DNA4005 AGCAGAGAACCCUCUAAUUCGGCCCGAA

2

0 transposon

LINEbaggins

4006 UCCGAAUCAAAUGCUACGUAACCAAGCCC

2

0 transposon

LTR

diver24007 UCGAAAUGCCGGGGCGAGGAGGAGGAC

2

1 Su(Ste)

Su(Ste)4008 GGAGUUUGACUGGGGCGGUACACCUGU

22 ncRNA

rRNA

4009 AAAAAAGUGAAGAAGACGUCGACG

2

2 no annotation

4010 UAAUGAAACAUGAUGCUUUCGCCGA

2

0 no annotation

4011 AAGACAACAGUGCAGACGGCGCCCGC

2

1 transposon

LTR

diver24012 CCACCCAGAGAAGUACCAAAAAGC

2

0 transposon

LINE

G6

4013 AUGACAGACAUCCCACACAUCCGGA

2

0 transposon

LTR

HMS-Beagle

4014 UGCCGUGAUCGUCUAGUGGUUAGGAC

2

1 ncRNAtRNA

4015 GAACUUGAGAUCGCCCCUGGACGA

2

0 coding gene

CG42398-RA¦SteXh:CG42398

4016 ACUACUUUCAGGACACGUUCAACCAGA

20 Su(Ste)

Su(Ste)4017 ACGAGCGCACGUGUUAGGACCCGAA

2 no match

4018 GCCGAACUUGAGAUCGCCCCUGGACGACC

20 coding gene

CG42398-RA¦SteXh:CG42398

4019 CAAAGCAUUGUGAUGGCCCUAGCGG

20 ncRNA

4020 AUCCUCUACACCCUGUUUACAGCAGA

2

0 transposon

LINE

G2

4021 ACUGAUAACGAAUGGAUGACA

2 no match

4022 ACGAGUACUAUGAGCGCCCAGAGUGA

2

1 transposon

LTR

opus

4023 UGGAGCUAACCGAUACUAAUUGUCCU

2 no match

4024 GCCGAAUCCCGGGGCCGAGGGAGCGAG

2 no match

4025 ACGGGAACCUCACCCGGCCCGGACACGG

2 no match

4026 GACGACAUAAUUGUCUUUCGACAUC

2 no match

4027 CCGAUAAUGAACCAAGCUUGACCUC

24028 AUGAGGCGCUCGGUGUCGGUGAAGGCC

2 no match

4029 GACACCGGAACAUGUGGCUGCGAGU

2

1 transposon

LTR

diver24030 CGAAAGUAGGUCUUAGUGAUCCGGUG

2 no match

4031 UGACAUCAUUCAGCGAGCACAAUCAA

2

0 transposonLow̲complexity

F-element

4032 AGAUUCAUCCAAGCGAACUGUGCCCGA

2

1 transposon

LINER1-element4033 ACGGACCGAAAAUCCUUUACUGGAU

2

0 transposon

LTR

DM88

4034 ACCGAAAGCAGACGAGGUAACGUAC

2

1 transposonLow̲complexity

F-element

4035 GUUAAUAAUAAUAAAUAAAAGGUGACCG

20 no annotation

4036 CUGUAAAUAAUUCAGCAGCACUGACC

2

0 transposon

LINE

Doc

4037 CUUUGGCUCAGUCACACAACAUUG

2

0 transposon

LTR

micropia4038 UCGACUCGAAAUAGUAACUACGUAA

2

0 transposon

LTR

4039 UGAGACUACAAACGGAUUGUGGACC

2

1 no annotation

4040 AAUCGCUCGAUGUCGUGAGGUGACCG

20 no annotation

4041 UACGUCAACAUAUCAGGGCAGCCCGACC

2

0 transposon

LINE

Doc4

4042 AAAGAGGGACGGCCGGGGGGCAUUCGU

2 no match

4043 UGACCAGUUGUCCCAUCAAAUCCGU

2

0 transposonDNAtransib2

4044 CAGCAUCAACAAGUACAAUCCCAGA

2

0 coding gene4045 ACCCUGAACGCGCCCGAUCUCGA

2 no match

4046 CACCCAUGCAAGGGAACGUGAGCUGG

20 ncRNA

4047 ACCCAGUUCAUUCUUGAGGCCUUCGG

2

1 transposon

LINE

G2

4048 ACAACCUAAUCACGUUCGGUGCCCG

20 transposon

LINE

Rt1a

4049 ACUUGUUACAAAACAUAGAUCCAAGA

2

0 transposon

LINE

Cr1a

4050 GGCUAAUGACGGUACCGUAAGAAUA

2 no match

4051 CAACUCUGUAUGCACACCCCGUUAGCUU

20 transposon

LINE

Circe

4052 GCAUUCGAGACUCAACGGCACGUCAC

2

0 transposon

LINE

Rt1b

4053 AGCGACGAAGACACCGGUUCAUGCUC

20 coding gene4054 GCAUUCGAGACCCAACGGCACGUGACUA

22 transposon4055 AACCAUAAACGAUGCCAGCUAGC

20 ncRNArRNA

4056 UUCCCUGAACUCGGAGCUCGGCA

20 coding gene

CG6370-RA¦CG6370

4057 AACUCUAAGCGGUGGAUCACUCGGCUC

20 ncRNA

4058 AUACCUAGCGUUGAAGCCCCGAUAAA

2

0 transposon4059 ACCUGGAGAAGGAACUUGAUGUGCA

2

1 coding gene4060 GCGAAGGUGGCGGAAUUGGGCUUAGG

2 no match

4061 UUCUCAUCGUCGUAGAACAAGCCCGAA

2

0 Su(Ste)4062 UCCUGUUGAUCAUUUGCCCGUGGU

20 transposon4063 UAUUACGAGCUCAACGAGGUACGGCAU

20 repeat4064 UACGAGAAUAUACCGCAAACCACA

2

0 transposon

rRNA
LINE

Quasimodo
CG8590-RA¦Klp3A

LINE

baggins

Su(Ste)trf

5SrRNA
1360

rRNA

0 no annotation

17.6

CG3891-RA¦CG3891
rRNA

CG5658-RA¦Klp98A
LINE

INE-1

rRNA
LTR

HMS-Beagle
CG13032-RA¦CG13032
Su(Ste)LINE

Cr1aSAR̲DM

LTR

gypsy12

4065 UACGACGAGAACGAGAUCAGCCCGA

2

4066 CCCCUGGACAACCCACUAAAUUAUAGA

2 no match

1 transposon

LTR

frogger

4067 UUCAAGAGAAGCAGGCGGAAUUAACGA
4068 UUCGGAGACAAAGUUUACAUGCUAAGGA

2

0 transposon

LINE

X

2

0 ncRNA

snoRNA

4069 CAUCUUCUUAAUGCAGCUGCCGAACU

2

0 Su(Ste)

Su(Ste)4070 AUGCACGACAGAGGAAGCAGAACA

2

0 repeat4071 UGCCCGUAAAAACGACUUGGUUGACAC

2

0 transposon

4072 ACUCGCCGAACCCCGGGGCCGAGGG

2 no match

4073 GGGGGCAUUAGUAUUACGACGCGAGA

20 ncRNArRNA

4074 GGAUCGGUGGUUCAGUGGUAGAAUGCU

2

1 ncRNAtRNA

4075 CAGUGCUGGCUGAAGUACUCCAGGCCC

20 Su(Ste)

Su(Ste)4076 GUGACUCUAGAUAACCUCGGGCCGA

2 no match

4077 UGCCGGAGCGAGGAGGAGGACUA

20 Su(Ste)4078 UGAUGAAACACAUUACCAGAACCU

2

0 transposon

LTR

HMS-Beagle

4079 UCGAACGAUAAACGGUGCUAACCAGC

2

0 transposon

LTR

GATE

4080 AAUAAAACAACGACCCGCUACCGGA

2

0 transposon

LTR

opus

4081 UCCGAAGUGACCGACCGAAACAGUCGCGA

2

0 transposon

LTR

diver24082 UCACCAAGCGUUGGAUUGUUCACCCAU

20 ncRNA

4083 CGGAUCCUCAACUGUGAGGGGAUCCUCAA

2 no match

4084 CCGAAGAAAACAAAGCCUCCGCC

2

0 transposon

4085 AUGGCUCUCUCAGUCACUUCCCGGGA

2

1 ncRNA

4086 UACGAUUGAAAAAGAACUACUAGCU

2

0 transposon

4087 UCCGAUAACGAACGAGACUCAAAU

20 ncRNA

4088 CGUAACUUCGGGAUAAGGAUUGG

20 ncRNA

4089 ACGAGUAAUAUGAGCGCCCAGAGC

2

1 transposon

LTR

opus

4090 CUGUUCUGAAUUUUACGUACCGCAGU

2

0 transposon

LINE

Fw2

4091 UGUUUCAUCGUUAGACGGCUCGU

2

1 AT-chX

4092 GCCUAUAAUUUUGCGACCUUAGUCAC

2

1 no annotation

4093 UGCGCGAAGAAGGAGGACGAGAAA

2

1 transposon4094 AUGGCUCUCUCAGUCGCUUCCCGA

2

1 ncRNA

4095 GACGUAGAAAAACUUGGAGACGAC

2

0 transposon

LTR

diver24096 ACCACCCUGAACGCGCCCGAUCUCGCC

2 no match

4097 GCAUUCAUAACGAGGUUGCGCAUU

20 transposon

LINE

Doc4

4098 UCUCAUCGUCGUAGAACAAGCCCGAGC

2

1 Su(Ste)

4099 AUUCGUAGACGACCUGGGGCGGGGUUU

2 no match

4100 AUGGUGACCACGGGUGACGGGGAAU

2 no match

4101 AACAGGGCGUGAAACCGUUAAGAGGU

2 no match

4102 GCAGAACUCCGAUGGCGAUAGCAACU

2

0 no annotation

4103 UCCAUGAGGACAUAACGCUGAGCGAC

2

0 transposon

4104 GGGGAUGAGCUGUGGAUAGGGGU

2 no match

4105 GAUCACCUGAUGCCGCGCUAGUU

20 ncRNArRNA

4106 UCCGGGGCUUCUCAACUACAAGC

2

0 coding gene

CG3221-RB¦dgt34107 UUAGUUUACCGGAACGGUCUGGAAUGGCC

2 no match

4108 GGCCGUGAUCGUCUAGUGGUUAGGACC

2

1 ncRNA

4109 UAAGAUCAACGAGAGAUGGCCAUUAA

2

0 transposon

4110 CUUAAACGAGUGUUAUUGUGGGCCGGU

20 ncRNA

4111 AAAUUCAUACCUGGAUACGCCCAA

2

0 transposon

LTR

flea

4112 AGAGAAAUGAUAGAAACCCAUGUA

2

0 transposon

LTR

Idefix4113 CAAUGAGAUAGCAUUUGGCGAGAGU

2

0 transposon

LTR

diver24114 CUGCCAGUAGUUAUAUGCUUGUCUC

2

0 ncRNA

4115 UCGGAAAUUAAACGAGAAGACAUUGC

2

0 transposon

LTR

INE-1

4116 CGCCCCCGGGGAGCCUGGCGCGC

2 no match

4117 GCUAGUUCCGAAAAAAUCAUUACCGAA

2

0 transposon

LTR

Stalker2

4118 GAACCUGAAACCGUAUGCGUAC

2 no match

4119 AAGAGCAAUGAACGAUAUUUUAAGA

2

0 no annotation

4120 CUGGCCGGCAGGGACCUCACCGAUUAU

2

0 coding gene

4121 GUGUGGCGAGGAGUGCGGUUCUUUGU

2 no match

4122 AAAACCUGAAAAUGAUCCUGAGUCGC

2

1 transposon

LINE

Helena4123 CAAACCAAUCCCAACCAAACCCGUCAU

2

1 transposon

LINE

G2

4124 AUGCUCUCGAAUGUAUGCCCGAUAAUU

2 no match

4125 ACGCUUUCACCGUGGAGACCGGGGUU

2 no match

4126 CUGUUCACAUGAACUUGGAAUUCCCAGU

2

0 ncRNArRNA

4127 AGCUGCCAUACUGCGAUCCACUGAAGC

20 ncRNArRNA

4128 AUGGCUCUCUCAGUCGCUUCCGGGA

2

1 ncRNArRNA

4129 UUCCCGGAUCCUCGACCCAUCGAGUGC

20 coding gene

CG4691-RA¦CG4691

4130 GCUCUCAUCACGAGGUUACACCCGCGU

2

0 no annotation

4131 CAACAAGAUACCCGUACGGCUGU

20 transposon

Simple̲repeat

I4132 CUGUCUCGAAAACAAUCGCAGGG

2

0 transposon

LINE

F

4133 CAGAUCAACAAAGUACGAUGGGGAACCA

2

0 no annotation

4134 GUAUACCUAUACAUUACCGCUAA

20 ncRNA

4135 CUCAACUGUGAGGGAUCCUCAA

2 no match

4136 GCGAGCGAACGCGGAUCAGGCCAGUGCCU

2 no match

4137 CCCAACAAUAAAAAUACUGUGAGCAGG

2

0 no annotation

4138 CUGUCGCGAAAUUGGUAUCCCCGAU

2

1 transposon

LTR

diver24139 GAUCCCAACUGUGAGGGGAUCCUCAA

2 no match

4140 UAUGUUGGCCUGGAUACGCUUGU

2

1 transposon

LINE

G2

4141 AAGGAUACUCGAAGACAUCACGGUGA

2

1 transposon

LTR

ninja-Dsim-like4142 CAAACCAAUCCCAACCAAGCCCGUCAA

2

1 transposon

LINE

G2

4143 AGAGAGACUACAAGAACCUGGAA

2

0 transposon

LTR

HMS-Beagle

4144 UGCUUUCAUCGCUGGCGAGGAUAUGGA

20 ncRNA

pseudogene

4145 GGCCGAAGUUCAAGCCCGGGUAUUCUG

20 repeattrf

4146 AAAGCAGUCCUGAGGUGGGCGUGG

2

0 no annotation

4147 AGCAGAGAACCCUCUAAUUCGGCCCGA

2

0 transposon

HETRP̲DM
LTR

gypsy

Su(Ste)rRNA
Low̲complexity

F-element
rRNA

LINE

McClintock
rRNA
rRNA

AT-chX-B
LINE

G2
rRNA

Su(Ste)LINE

Quasimodo

tRNA
LTR

opus
rRNA

rRNA

CG5409-RA¦Arp53D

rRNA

LINE

baggins

4148 AACGCAUUAAGCAAUCCGCCUGG

2 no match

4149 AAGGCUAAAUACUACUGACUGACCGA

2 no match

4150 CAGGAAGAGUGCCCGGCUGAACGGA

2

0 transposon

LTR

ninja-Dsim-like

4151 AGCAAAAGCAACAAUAAGUUACCGCGA

2

0 transposon

LTR

McClintock

4152 UCCAGACGCAGCCCGGCCAGGA

2

0 transposon

LTR

ninja-Dsim-like4153 ACGCCUGUUAGUCCGAAUACAUACGA

2

0 no annotation

4154 CGCAAUCCGAGGAAGUAGCUGUGCCGCA

2

0 no annotation

4155 GGAUCCUCAACUGUGAGGGGUUCCUCAA

2 no match

4156 UUCUCAGAAAACGAAUUCGACCACG

2

0 transposon

LTR

gypsy

4157 AGUGCAUUGACUUUAUUACAUAUUA

2

0 transposon

LTR

DM88

4158 ACAAGAAGUAUCCCAGCUACAACAGU

2

0 transposon

LTR

Quasimodo

4159 AUAAAGGGCAUCUAGGCGGCCGGGUA

2 no match

4160 GAAUUCAUGAAGAAAGAAACCGAAU

2

0 transposon

LTR

Idefix4161 CCUGAUGAAGAAGAGAUGCCCAGU

2

0 transposon

LTR

ninja-Dsim-like4162 GCUUUGAGAGGCGCCGUAGUUACCACCC

2

0 no annotation

4163 GAAACAGCAUCCCUACGAUUCCUCC

20 coding gene4164 ACAACUGUGAGGGGAUCCUCAA

2 no match

4165 GUAACCGAGAAACGUGUUGACAU

2

0 transposon

4166 GCGUUCACCGCAUUGCUCCUGAUUAAA

2

0 coding gene4167 AAGACAAGUAUACCGUGGCACACCAUC

2

0 transposon

LTR

micropia4168 AAGCCGGAGGAAGGUGGGGAUGACG

2 no match

4169 AACUCGGAGGAAGGUGGGGAUGACGUC

2 no match

4170 UGAGUCAUAAUGUAGUUCUUGGACGAG

2

1 transposon

LTR

flea

4171 GUCCAGAGGAGGCGAGAAUUUUACAU

2

0 AT-chX

4172 AAAACGCGAAUGGCAUCCGGAUGAGA

2

0 transposon

4173 UGUUUCAUCGUUAGACGGCUCGUGC

2

1 AT-chX

4174 CAAGCUAGACUAUGUAUCCCCCGGGUAA

2 no match

4175 UGUUUCAUCGUUAGACGGCUCGGCG

22 AT-chX

4176 GAUGUCUAUGAGAUGACCGUAAUGAGC

2

0 transposon

LTR

ninja-Dsim-like

4177 CACAUCAACAGAAAGCGUAUCCAGGCCA

2

0 transposon

LINE

G2

4178 ACCCUGAACGCGCCCCCUCGU

2 no match

4179 GUCCCUUAAAUCAGCACUCGUAAA

2

0 no annotation

4180 AACGGUACGAGGUAGUUGCUUUCCGAG

2

1 no annotation

4181 GGGAGUGGGAGCGAAAUCGGGGAC

2

0 no annotation

4182 CGUGUCCGGAAAAUGUUUACAGUA

2

0 coding gene4183 GGACUCUCCGCCUUCGGACCCGCC

2

0 coding gene4184 CGUGAGAGGAUCAGCAUGCCUGGCA

2

0 transposon

4185 AGGUGGGGAGUUUGACUGGGGCGGU

21 ncRNA

4186 GACAUCAUUUCGAGACCCAUUUUAAGC

2

0 transposon

4187 GUCUGGUUAAUUCCGAUAACGAACGG

2

1 ncRNArRNA

4188 UCUCAUCGUCGUAGAACGAGCCCGA

2

1 Su(Ste)

Su(Ste)4189 GAGGUUCGAAGGCGAUCAGAUACCG

20 ncRNArRNA

4190 AAUCGAAUGAGACCUUGGAGGAC

20 ncRNA

4191 AUGAGAUAUGCUAGCAGACUGGAGA

2

0 transposon

LINE

G2

4192 GCGUAGUCGAUGGGAAACGGGUUA

2 no match

4193 AGAUACUUUAUGACGACACUGGAA

2

0 transposon

LTR

gypsy124194 CCGGUAAAGCGAAUGAUUAGAGGU

22 ncRNA

4195 AGAUGUCCGGGCUGCACGCGCGCU

2 no match

4196 GACAGAAUAGAGAGGAUCCUCAA

2 no match

4197 CAGAUCAACAAAGUCCGAUGGGGA

2

1 no annotation

4198 AUGCUCUCGAAUGCUUGCCCGAUAUAC

2

0 transposon

4199 ACGCGACCUCAGAUCAGACGUGG

2 no match

4200 UCCUUCGAUUUCCCGUUUUGAGAGGCGCCGUAGU

2 no match

4201 AUAGGGACGGUCGGGGGCAUCA

2 no match

4202 AUCUAUAUUAUCCCAGCACUACGAAGC

2

1 no annotation

4203 CCCAAACGCAGACAUCGAGCGGUCAAUA

24204 UGCUAACAAGGCGCCGCCCGUGG

24205 UUAUUAUUAUUAAGAUGGGCUUGUAGG

CG1076-RA¦CG1076
LTR

invader2
CG41580-RA¦CG41580

AT-chX-B
LTR

flea
AT-chX-B
AT-chX-B

CG6817-RA¦foi
CG3640-RA¦CG3640
LTR

mdg1
rRNA

LTR

gypsy12

rRNA

rRNA

LINE

R1-element

0 transposonLow̲complexity

F-element

0 transposon

LINE

G6

2

0 transposon

LINEbaggins

4206 CUGGCUUUACGGCGAGGACAUUGCG

20 transposon

LINER1-element4207 GCAUUCGAGACCCAACGACACGUGAU

2

2 transposon

LINE

INE-1

4208 CUGCUCCGAGCCCCGCGUCGGCAUCC

2

1 coding gene4209 CGCAUUGAUUACGUCCCUGCCCU

20 ncRNA

4210 GCAUUCAUAACGAGGUUGCGCAUUGCA

2

0 transposon

4211 UGCGAGAGGUCCCGGGUUCAUUUCC

2

1 ncRNA

4212 AGCGAUCUGAGUGAGUAGAGUGU

20 transposon

LINE4213 CUGGGAAACGGGGCGCGGCCGGAAA

2 no match

4214 UCCGAAGACAACGAGGAGCAGAGCU

20 transposon

LTR

4215 GUGGGCCGGUACUAUUACUUUGAACA

20 ncRNA

4216 AACGAAGAAAAACAAAGAUUGCGCG

2

1 transposon

LTR

McClintock

4217 UGUAAUACAAGAGACCCGAAAACCGU

20 transposon

LTR

gypsy44218 AACUUCGGGAAAAGGAUUGGCUCU

2

1 ncRNA

4219 ACCGAUAAGAGAUUGGCUAAGUUAA

2

0 transposon

4220 UAUAUCAGUUAUGGUUCCUUAGAUCGU

20 ncRNA

4221 AACUACUGGACCAGAUGAUAGAGGG

20 transposon

4222 GCUGAGAAGACGGUCGAACUUG

2 no match

4223 AUGGAGGAGUCCGUGGCAUUCAGGUU

20 ncRNA

4224 AAAACCUGAAGAUGAUCCUAAGUCGC

2

1 transposon

LINE

Helena4225 UUAGAAGACAUAUCAUACCCAGGAA

2

0 transposon

LTR

Idefix4226 CGCUAGCUCAUUUCCCGGGAUGUUA

2

1 transposon

LINE

Fw2

4227 AACCAUGAGAAGUAAUUAGGGC

2 no match

4228 GUUUCAUCGUUAGACGGCUCGGGC

20 AT-chX

4229 UAUAGCUAAUUAACACAAUCCCGGG

20 ncRNA

4230 CCAACGGGAUACCUCAUACUCGAG

2

0 transposon

CG32479-RA¦CG32479
rRNA
LINE

Doc4
tRNA
RR49783
1731
rRNA

rRNA
LTR

accordrRNA

Unknown

RR50960
7SLRNA-RA

AT-chX-BrRNA
LTR

micropia4231 GGCUGAUGAAGGAAGACUCGUG

2 no match

4232 GAUCUUCACCGUUGACUAGCCCCA

20 Su(Ste)4233 AAAACCUGAAGAUGAUCCUGUGUCGC

2

1 transposon

LINE

Helena4234 CGGGAUAAGGAUUGGCUCUAAGGGUC

2 no match

4235 GAGAUAACCAAGGACGUUCACACGAGG

2

0 transposon

LTR

opus

4236 GCAGUUAUUACGACGAGAAGAUGGCUC

20 transposon

Unknown

RR50960

4237 GCCCUUUGUACACACCGCCCGUC

20 ncRNArRNA

4238 GCGGGAAUAGCUCAGUUGGUAGAGC

2 no match

4239 GCCCGGCUAGCUCAGUCGGUAGAGCAUG

20 ncRNAtRNA

4240 CUUCCUAAAAUCGAAUUAAAACCCC

2

1 no annotation

4241 CUGGAGUACUUCAGCCAGACACUGGA

2

0 Su(Ste)4242 UGAGAGGCGCCGUAGUUACCACCCCAC

20 no annotation

4243 AUCAAUCGCUGAUUAGGCACCGGG

2

0 transposon

4244 UCGCAUCGUCGUAGAACAAGCCCGGGG

2

1 Su(Ste)4245 CCGUGGUACGUUCGGAGUGAAAACA

2

0 transposon4246 UAACUUCGGGAUAAGGAUUGGCU

20 ncRNA

4247 GAUCGUGAUGUUCUUGGCCUUGCCCGUG

2

0 no annotation

4248 GGUGUCCGAGCGAAUCACCUGCCUGG

2

0 coding gene4249 CCGGAAAUGAUCAUCCAGCUGCCAC

2

0 transposon

4250 AGCGAAUGAUUAGAGGCCUUAGGGUC

20 ncRNA

4251 CUCGCCGAAUCCCGGGGCCGAGGGAGCGA

2 no match

4252 CCGAACUUGAGACCGCCCCUGGACA

2

0 Su(Ste)4253 ACUAUGAUGAUUCACGCAGGCG

20 transposon

LTR

Dm88

4254 UGCUUAACUACCGUCACGUUUGGAA

2

0 transposon

LINE

INE-1

4255 GUUAAUUCCGAUAACGAACGAGACUC

20 ncRNA

4256 GCAUCCUAGAAUCGACCGACCAGC

2

0 transposon

LTR

flea

4257 CAACUCAUUAAUUUUGACCCUAAGCAA

2

0 transposon

Unknown

RR509604258 GCCCCGUCGGACCCGCUCUGCCAGCCA

20 coding gene

CG31820-RA¦CG31820

4259 UGUACACACCGCCCGUCGCUACUAC

2

0 ncRNArRNA

4260 CGCGACCGGCUCCGGGACGGCUGGGAA

2 no match

4261 CCGGCGGGGAAGGUGGCUCGGGGGGC

2 no match

4262 CUGUAACUCGGGUCCUGUAACUCGGGUC

2 no match

4263 UUCCGAGGAACCAAUUGGUCCAGCUGC

2

1 Su(Ste)

Su(Ste)4264 UCUCAUCGUCGUAGAACGAGCCCGAGG

2

1 Su(Ste)

Su(Ste)4265 UGGAUACUAAGCAGGGACGUUAAUGAA

2

0 coding gene4266 ACCUGAAGAUGAUCCUGAGUCGC

2

0 transposon

LINE

Helena4267 UCUCGAAUGUAUGCCCGAUAUACGGA

2

0 transposon

LINER1-element4268 AAAACCUGAAGAUGAUCCCUAGUCGCA

2

2 transposon

LINE

Helena4269 ACGAGUAAUAUGAGCGCCAGAGU

2 no match

4270 UGUCUCAUCCGGUUCAAUACAUG

2

1 transposon

LTR

diver24271 GUACCGAACCGCGAGACAGCAGACGAGC

2

1 coding gene4272 CCGAAUACGAGGAACAGGCAGAAUCCGA

2

0 transposon

LTR

gypsy44273 CUUUGGCUCAGUCACACAACAUU

2

0 transposon

LTR

micropia4274 ACUGGCAACAUGUCGAGCUCCCAGA

2 no match

4275 AGGAAUAAUGGAAUAGGACCGCGGUU

2 no match

4276 GCGCAUGUUGACUGGGUAAGGAUA

2

0 transposon

LTR

opus

4277 CAGCCAGAACGGAGUUACCCUUCGCCC

2 no match

4278 GAAUGACGGUUUAGACGGCCAGCU

2

0 transposon

LTR

ninja-Dsim-like4279 GGGAACUCUAAUGGGACUGCCGG

2 no match

4280 UGGACCGAACACUUUGAACCAAGU

24281 AAGAGGGACGGCCGGGGCAUUCGUAUU

2 no match

4282 UCGGCCCGAACCCUUCUGGUGUGAUU

24283 AGUCGAGAGUGGACGGGAGCGGCGGGG

2 no match

4284 GGGUUCGCAUCCCAUCCUCGUCGCCA

2 no match

4285 UGAGAUGAACAAGAGUGUCACAGC
4286 GGCCCCGUUCUUUACACCCUGUUC
4287 CGUCCGGUGAGCUCUCGCUGGCCCUU

2 no match

4288 AAGAACAACAGUGCAGACGGCGCCC
4289 CAUCCUAGAAUCGACCGACCAGCU

Su(Ste)Su(Ste)LTR

INE-1
Su(Ste)Low̲complexity

F-elementrRNA
CG32512-RA¦CG32512

Low̲complexity

F-elementrRNA
Su(Ste)rRNA

pseudogene

CG31108-RA¦CG31108

0 Su(Ste)

Su(Ste)2 transposon

LINEbaggins2

0 transposon

LINE

Circe

2

0 transposon

LINE

Doc2

2

0 transposon

DNA

H

2

0 transposon

LTR

flea

4290 AGCAGUUAUUACGACGAGAAGAUGGC

2

1 transposon

Unknown

RR50960

4291 GCCCGUAUAACGUUAAUGAUUACU

2

0 ncRNA

4292 UGUCUGCGAGCAUGAGACCAUGGAU

2

1 transposon4293 UAGAGGGGGAUGGAAUUCCGCGUG

2 no match

4294 GAGGCGCCGUAGUUACCACCCCAA

24295 GGAGCCGGGCGUGGAAUGCGAGUGC

2 no match

4296 CUCGAGCAGCCACAUUCAGCCGAACGGCC

24297 ACCCUAAACGCGCCCGAUCUCGU

2 no match

4298 GUUCCUCGGGAUCAAGGGCAACGAGUUC

20 coding gene

4299 AGAGCUCUGAUGACGAACCCGG

2

0 transposon

LINE

G6

4300 CACGUGCCUGAGACAUGAUGGCUGUGCC

2 no match

4301 GGAUCUUCAACUGUGAGGGGGAUCCUCAA

2 no match

4302 UCUGAAGAUAAGUGGAGUUGGAAAG

2

0 transposon

LTR

ninja-Dsim-like

4303 CUGGAUACUAGGUAUCGACGCCGAUA

2

0 no annotation

4304 GAAUGCCGGAGCGAGGAGGAGGA

2

0 Su(Ste)4305 AGCAUAAGAAAAGAGGAAUACGCGAGA

2

0 transposon

LINE

S

4306 CGAAAAAAUCCCCCGGCUACGACCUU

2

0 transposon

LINE

FW

4307 ACGAGUGAUAUGAGCGCCCAGAGU

2

1 transposon

LTR

opus

4308 ACGCCCGAUACAUCAGGUCAGAGC

20 repeattrf4309 ACAGGACCAGGGUGUGGCCGCCACCA

2

1 coding gene

CG6451-RA¦blue

4310 ACUGGCACGGACUUGGGGAAUCC

20 ncRNArRNA

4311 AUAUCCGAGGCCCUGUAAUUGGAA

20 ncRNA

rRNA

4312 ACUCGCCGAAUCCCGGGCCGAGGGA

2 no match

4313 ACGACCUCAGAUCAGACGUGGCGACC

2 no match

rRNA
LINE

INE-1

1 no annotation
0 coding gene

CG18659-RA¦CG18659
CG40635-RA¦CG40635

Su(Ste)4314 UUAAUGCCGGAAGCGAUCCCACUGC

2

0 AT-chX

AT-chX-B

4315 GGUAACGGGGAAUCAGGGUUCGAU

2

0 ncRNArRNA

4316 GAAGGCCGAAGUGGAGAAGGGUUC

2 no match

4317 AACGUCAUGAUCCUCGAGGCCCGU

2

0 coding gene4318 CAAGCAUUUGACCGAGUCUGGCUGA

2

0 transposon

LINE

Doc2

4319 ACCCUACUGAUGAAUGUUACCGCAAU

2 no match

4320 CGACUCGUUCUUAAAUUUCGCAAC

2

1 transposon

LINE

Cr1a

4321 AGUGCCUAACCACCGAGAACCGCAAAC

2

0 coding gene4322 CUGGCGAAUAAAAGUAAACGAGCAA

2

0 transposonLow̲complexity

F-element

4323 GAGGUCACCUGUGUACCCUUGACGGA

2

0 transposon

LINE

F

4324 ACCAUGAAAGGCGUUGGUUGCUUA

20 ncRNA

4325 AACGAUGGAAGAUGAUGAAGAUC

20 transposon4326 AGCGAAUGAUUAGAGGUCUUGGGGCC

2 no match

4327 CUCGGGAUCAAGGGCAACGAGUU

24328 UGCUCUCGAAUGUAUGCCGAUA

2 no match

4329 UUCGAAACAAACGAUACUGUUCGGCC

2 no match

4330 CGGGCCACCCCUCCCACGGCGCGACCGC

2 no match

4331 GACCAUAUCCGAAGACGCGGCG

24332 AGCCCCGUACGUGAAAUGACCUGUGUG

2 no match

4333 CUGUAACUCGGGUCAACUGUAACUCGGGU

2 no match

4334 CCAGUCAGUAGAGCUCCGAGACC

2 no match

4335 CGGGUAACGGGGAAUCAGGGUU

20 ncRNA

4336 GAACCUUUUAUGGUUAUAUUCACGGAGG

2

0 transposon

4337 GACUUCUUAGAGGGACUAACAGCG

2 no match

4338 CUGUCCAAAAACAUGACACGCCGGGC

24339 CAGAGGCGACGAAGGACGUGGUAAGCUG

2 no match

4340 AGCAGGACGGUGAUCAUGGAAGU

2

0 ncRNA

4341 UUCAGCUGAUCGUGAUUUCCGCCGU

2

1 transposon

LTR

Dm88

4342 CGCUGAAUAUACAUAAGCCCGGUCGCGCC

2

1 transposon

LTR

GATE

4343 GCCAAUGAAAGUCACCCCUACACCCG

2

0 transposon

LTR

McClintock

4344 CGGAAUGGAACCGAGCUCUGAGU

20 transposon

LINE

X

4345 GGUAGGGAGUUUGACUGGGGCGGUA

20 ncRNArRNA

4346 CAAACGUAAUGUUACGGUGCCCAAAUU

2

0 ncRNArRNA

4347 GCGCCCGAUGCCGACGCUCAUCAGACC

2 no match

4348 GCGGGCGGCCCGGGUUCGUUUUCCC

2 no match

4349 CAAUGACAAAAUGCCGACGAGAUUGAGA

2

0 no annotation

4350 AAAACCCAUGACCUAAACACGAUUCU

2

0 transposon

LTR

Idefix4351 CGCAGAGUACGGGGCUUACUGAAGUUA

20 transposon

LINEbaggins

4352 UCGAGAUGACAACCUUGGACCUGA

2

0 transposon

LTR

micropia4353 UGCGGGGAUGAACCGAACGCCGGGU

2 no match

4354 AAGUAAAAGAACCAACCACGGGAAC

2

0 transposon

LTR

diver24355 UGCAUAUCAUUCACGCCAAGCUCCGACC

20 Su(Ste)

Su(Ste)4356 GGAGCCCAAGGAGAUGAUUGCCGUGUU

2

0 coding gene

CG18659-RA¦CG18659

4357 UUCGAGAGCAUAUAAUCCCCGUAG

2 no match

4358 AGCUUCCUGAGAUCUGUGCCCGAU

2

0 coding gene

CG31204-RA¦CG31204

4359 GAACCGAACGAUUUGUGCUCCGAACA

2 no match

4360 AGGGCGUGAAACCGUUAAGAGGU

2 no match

4361 AAAACCAAAGCUUUUGGGCUCCGGGGGA

2

1 ncRNA

4362 UGCACAUUAAGUUUUGAUCGCCGAA

2

0 transposon4363 UAUCCGAGGCCCUGUAAUUGGAAUG

20 ncRNA

4364 AGCGGCGUCCGGUGAGCUCUCGCUGGCCC

2 no match

4365 UGCUGACUAAGAGGGCUGCACAGU

24366 GGAGUCUAACACGUGCGCGAGUC

2 no match

4367 GCGAGCACAUGGAUUUACCGAUAAAGA

24368 CUGUGAGGUCGAUCCUCAA

2 no match

4369 AAAUAAACAAACUGACCGACACCGUGA

24370 CUGAGAAGACGGUCGAACUUGACUAUC

2 no match

4371 UACCCGAACAUCAUCAAUCUGACCA

2

1 coding gene

CG2964-RA¦CG2964

4372 GCAUUUAUGUUAGUUACUUGUUCCCCGG

20 ncRNArRNA

4373 AACCUCCCGUGGAGCAGAAGGUC

2 no match

4374 GAUAGCAACGAAGACGCCGAUGAG

2

0 transposon

DNA

invader24375 ACCGAAAACAGGAUACGGACCCCGCA

2

0 transposon

LINE

TART

4376 GGCGCAAGACGGACCAGAGCGAAA

2 no match

4377 AGGCCGAGGAGAUGCGCAAGCGCGAGGA

2

0 coding gene4378 CAAGCAUUUACGCGAUUCACCGGA

2

0 transposon

LINE

INE-1

4379 UCCCCAUGAACGAGGAAUUCCCAGU

2 no match

4380 UGAGAUAUGCUAGCAGACUGGAGAA

2

0 transposon

LINE

G2

4381 CCACAGAGUACGGGGCUUACUGAAGU

2

0 transposon

LINEbaggins

4382 CCACAGAGUACGGGGCUUACUAA

2

0 transposon

LINEbaggins

4383 ACCCUGAACGCGCCCGAUCUCAU

2 no match

4384 GGAAGGACGACCACGUUGUAAUGCC

2

0 transposon

LTR

ninja-Dsim-like4385 AAGGAUACUCGAAGACACCACGGU

20 transposon

LTR

ninja-Dsim-like

4386 AAGAGGGACGGCCGGGGGGCAUUCGU

2 no match

4387 CCAACCUUAAAUUACAGCUUGACAA

2

0 transposon

LTR

McClintock

4388 CAGCUAGACUAUGUAUCCCCGGGU

2

1 transposon

LINE

Doc

4389 CAACCCUGAACGCGCCCGAUCUCGU

2 no match

4390 GCCCGUAAAAACGACUUGGUUGACAC

2

0 transposon

LTR

gypsy

4391 ACCCUGAACGCGCCCGGUCUCGUC

2 no match

4392 GCCGGGGCGAGGAGGAGGACUAGCUGU

24393 UGGGGUGUAGCCAAGUGGUAAGGCAGC

2 no match

4394 AUCGUGUCCCAAUAUCUCCUGUGA
4395 CCGAACUUGAGACCGCCCCUGGAUG
4396 GUCAAAUUUGGGUAUAGGGGCGA

2 no match

CG7769-RA¦DDB1

CG34373-RD¦Ect4

rRNA
Low̲complexity

0 coding gene

0 transposon

F-element
CG40635-RA¦CG40635

LINE

Rt1b

rRNA
LINE

baggins

1 no annotation

0 transposon

rRNA

rRNA
LTR

rRNA
LTR

1 ncRNA
0 transposon

invader1

HMS-Beagle
Uhg2-RALTR

invader3

CG4211-RA¦nonA

1 Su(Ste)

Su(Ste)20 repeattrf

2

1 Su(Ste)

Su(Ste)4397 UGGGCCCGAACCCUUCUGGUGUGUUGA

2

1 transposon

LINEbaggins

4398 GAGAAUAGUCUCCAACGCCCAUCCC

2

0 transposon

LINE

G2

4399 AACUAAACUAUGAAGCCGGGGUAA

20 transposon

LINE

G2

4400 CAUUCAUAACCGAGCGAUUGUUCAUC

2

2 transposon

LTR

GATE

4401 ACAUUCAUAACCGAGCAACUGUUCAA

2

1 transposon

LTR

GATE

4402 GAACUGUGAGGGGAUCCUCAA

2 no match

4403 CCCCUAUCCAAGCUACAGCACAGUUGGC

20 transposonLow̲complexity

F-element

4404 CUGCCCAGUGCUCUGAAUGUCAAAGU

2

0 ncRNA

rRNA

4405 UGGAUACUAAGCAGGGACGUUAA

2

0 coding gene

pseudogene

4406 UACCUUGGGAAUGGCUUCACAGU

2

1 ncRNA

4407 GCAAGAGAUAAAGUGCCUUAAAA

2

0 transposon

DNA

HB

4408 AUAGCGACAACCAGAGUUCCCAGUGU

2

1 transposon

LTR

DM88

4409 GCGAAGCCUUUGCUACUGACACCAG

2

0 transposon

LINE

F

4410 AACAGGCCGUACCAAUAUCCGCA

20 ncRNArRNA

4411 AUAGAAGCAGUUUGGGGGCAUUAGU

20 ncRNA

rRNA

4412 AUAUACGCCGCUCCGAAAUUUGUUGC

2 no match

4413 UGCCCUCGAAUGUAUGCCCGAUAU

2

1 transposon

4414 GCCGGAGCGAGGAGGAGGACUAUU

22 Su(Ste)4415 CCAGACGUAAUACUCCACUACCCAG

2

1 transposon

LINE

HMS-Beagle2

4416 CUGGCAUUUAUACAGUGCAUUGG

2

0 transposon

LINEbaggins

4417 UGCUCUAGAAUGUAUGCCCGAUAUA

2

1 transposon

LINER1-element4418 ACCGAAUUAAUCUCGAGGCUGCAAG

2

1 transposon

LTR

mdg3

4419 AACCAGACAAAAUUUUCGCACAAGUGG

2 no match

4420 GGAUCCUCAACUGUGAGGUGAUCCUCAA

2 no match

4421 GCAUUCGAGACCCAACGGCACGUGACAA

2

1 transposon

LINE

INE-1

4422 AUGUUUCAUCGUUAGACGGCUCGGG

2

1 AT-chX

4423 AGGAAUUUGAGCUGCGUUGACGCCGAA

2

0 transposon4424 UGCUUCAUCGUUAGACGGCUCGGCC

22 AT-chX

4425 AGAGUGAUCGUAUUCCACUGAC

2 no match

4426 GAGUCAAACAUCCAAGUACCAGAGC

2

0 transposon

LTR

frogger

4427 GGAUAGUCCCGAAGAAACCUAAACCA

2

0 transposon

LTR

opus

4428 CAAGAUAUGACCAAAACAAAGAC

2

0 transposon

DNA4429 GGAGCAGAAGACGAUUAUACCAGAGC

20 coding gene4430 AGUUACUAAAGGCGGACAGAGACGGAG

2

1 transposon

LTR

McClintock

4431 ACCGAAGAAAACAAAGCCUCCGUC

2

1 transposonLow̲complexity

F-element

4432 UCCAGAACGAGGACCUGAGGGGCAU

2

0 transposon

LTR

HMS-Beagle

4433 AGACCUCUGUUCUGCUUUCAUU

20 ncRNA

4434 CGUCUCAUGAGGAAUGGGCCCAGUGU

2

1 transposon

LINE

G2

4435 ACCAAGAUCAUCAACCCGUGUUAU

2

0 transposon

LINE

Cr1a

4436 CGACCAAUAAAACGAUUAAGACCACC

2

1 transposon

LTR

McClintock

4437 CUGGUUGCAACGGGUAACGGGGAAUCA

2

1 ncRNArRNA

4438 CUCCGGGGGAAGUAUGGUUGCAA

20 ncRNA

rRNA

4439 AACACGGGAAAACUUACCAGGUCCGA

2

0 ncRNArRNA

4440 AACUGAAUAACGAAUGGAUGAC

2 no match

4441 CCCACCCUGAACGCGCCCGAUCUCGUC

2 no match

4442 GAAAACGUGAAACAAGUACUCUCCGAG

2

0 transposon

LTR

blood

4443 CCCGUAGUGAUGAAGACAGAGCCAC

2

0 transposon

LINE

FW

4444 ACAUUCAUAACCGAGCGACUGUUCAC

2

1 transposon

LTR

GATE

4445 ACUCGCCGAAUCCCGGGGCCGGGGG

2 no match

4446 GCAUUCGAGACUCAAUGGCACGUCA

2

0 transposon

LINE

Rt1b

4447 CUGGUUAAUUCCGAUAACGAACGAGAC

20 ncRNA

4448 GACACUAGACAAUAACGACCGGAUAC

2

0 transposon4449 AGCAGCCAAAACGUGUUGGAGACGC

20 no annotation

4450 UAUUGCACUUGAGACGGCCUGAU

20 ncRNA

4451 ACUCUAGAUAACCUCGGGCCGAUCGCA

2 no match

4452 UUCGUCAGGACUCACCAGCGCUC

20 transposon4453 CACCGGCGGUACAGGAACCAGAACGAG

2

0 coding gene4454 AACGCAUUAAGUCGACCGCCUGGGGAG

2 no match

4455 UUUGCAAAACGAGAGCGAUAGAGC

2 no match

4456 ACACACGUUAUGGCAACCCGCUGU

24457 UGUAGUGUAACGGCUAUCACAUC

2 no match

4458 ACUAACGGGAUCAAAAGCACUGCUG
4459 AAUGUGAUUUCUGCCCAGUGCUCUGAA

alphagamma-element

LINE

R1-element
Su(Ste)AT-chX-B
LTR

ninja-Dsim-like
AT-chX-B

1360
CG13131-RA¦CG13131

rRNA

rRNA
LTR

RR50207
mir-312-RA

LTR

opus
CG11181-RB¦cup

0 transposon

LTR

Quasimodo2

0 transposon

LTR

accord20 ncRNA

4460 AAUCAAGAACGAAAGUUAGAGGUUC

20 ncRNA

4461 ACAAAUGAAAUUCAUGAAGCUGUGGCC

20 transposon

DNA

RR514764462 GGCCCUGAGAGAUGGGCGAGCGCCGUUCC

2 no match

4463 UGCGAGAAAAAAUGCAAUAACUGUGG

20 transposon

LINE

F

4464 ACGUACUAAAACAAAACCUCCGCGU

20 transposon

LINE

Rt1b

4465 AAGCACAAGAAAAGUCCUUGCGGGAGC

2

1 coding gene4466 UUCAAGGUUAUCCCAGGAUGCUGUGC

2

1 repeat4467 AAGACAAGUAUACCGUGGCACACC

2

0 transposon

LTR

micropia4468 AGGUGGUGAACGACGGCGACAA

2 no match

4469 GCCGCUUUAGCUCACCUGGUAGAGCAUC

2 no match

4470 UUGAAACUGAAGCACGAAUUGUCCAA

2

0 transposon

LTR

Dm88

4471 GUCGGAGCGUGGCGUGAAUGAUAU

2

0 Su(Ste)4472 GCAUCCUAGAAUCGACCGACCAGCUAU

20 transposon4473 GAGUCCAAGAGAUUUGCCCCCGAGGA

2

0 coding gene4474 CCCAGUUCUAAAUUAACUCGCAUGCGGC

20 transposon

LTR

gypsy84475 GAUUCCAAGAAAUAAUAUUACGGCCGA

2

0 transposon

LINE

Doc2

4476 GCCGAUGACAACGCCUUCCUAGCC

2

1 transposon

LINE

G

4477 GAUACUCGAAGACACCACGGUGAAA

2

0 transposon

LTR

ninja-Dsim-like4478 AGAACCGCACCGAUUUCGCCCUCGC

2 no match

4479 UGUUUCAUCGCUAGACGGCUCGGGC

2

1 AT-chX

rRNA
rRNA

CG12717-RA¦CG12717
trf

Su(Ste)LTR

flea
CG18743-RA¦Hsp70Ab

AT-chX-B

4480 UCCAGGAAUAUCUCGACUUAAAGCACA

2

0 transposon

4481 UGUCACGCGGGAGACCGGGGUUCA

2

0 ncRNA

4482 ACAUUCAUAACCGAGCGACUGUUCUAA

2

2 transposon

LTR

GATE

4483 UACACAAGAAGAUGACGCCAGUGC

20 transposon

LINE

G2

4484 GAAACAACAACGUGCGAGAUAUGA

2

0 transposon

LINE

G2

4485 GCACACAGAGGAGAGUAGAUGAGAGCA

2 no match

4486 AUCGAUGAGAUCAGGGCCUGGAGA

2

0 transposon

LINE

G

4487 AGAUCUUCACCGUUGACUAGCCCCA

20 Su(Ste)

Su(Ste)4488 AUGGCUCUCUCAGUCGCUUCCCGGGGA

2

1 ncRNArRNA

4489 UGGCUCAGCGUGUGCCUACCCUACG

2 no match

4490 CCGAAAACACGAGAGCCGAGCGCUG

20 transposon

4491 GACUGCAUAUCGAGAGGUCCCCGGUUU

22 ncRNA

4492 CAGCGAGUCUAACCUUGGCCGAGAGGUC

2 no match

4493 GGAUACUCGAAGACACCACGGUGAA

24494 GCGACCUCAGAUCAGACGUGGCGAC

2 no match

4495 UGCGAUCCACUGAAGCUUAUCCUUU

20 ncRNArRNA

4496 GCUUCCCGGGAAACCAAAGCUUUUGGGC

20 ncRNArRNA

4497 GGGCAGUUUGACUGGGGCGGUCGC

2 no match

4498 CACAUUCUGAUUCCGAUUCGAGUUCAA

2

1 transposon

4499 CGCGAGAAGUCGAUGGCACAGUUAUCA

2

0 coding gene

CG16833-RD¦CG16833

4500 CGUAGGUGAACCUGCGGAAGGAUCA

20 ncRNA

rRNA

4501 GUUCGAUUCCCUGAUGGCGCACCA

2 no match

4502 AAGUGCGGGUCAUAAGCUUGCGUUGAU

2 no match

4503 GCUUUAAUCACGAGCAAUGCGGUGAA

2

0 no annotation

4504 UCGAACUGCACCCUGGAUCGGACUCGC

20 transposon4505 UCGCUGAGGCCCACUGGCAGGGUGUU

2

0 Su(Ste)4506 GGCUCAUCUCAUCCUGGGGCUGUAG

2 no match

4507 GGAAUCCUCAACUGUGAGGGGAUCCUCAA

2 no match

4508 AGACAUGGUCGAAGAUGAGCACGUUGC

2 no match

4509 AGGGAAAGGAGCCGAGGCGUCGA

2

0 transposon

LTR

ninja-Dsim-like

4510 CAAGCUAGACUAUGUAUCCCUGGGU

2

1 transposon

LINE

Doc

4511 ACCACCCUGAAUGCGCCCGAUCUCGUC

2 no match

4512 AAUGCCGUUCGUCCUGGAGUCCCGAG

2

0 coding gene

CG10252-RA¦CG10252

4513 UCACCAAGCGUUGGAUUGUUCACC

2

0 ncRNA

rRNA

4514 AAAACCUUCGUAGACGACCUGCU

2 no match

4515 ACGGAAUGGAACCGAGCUCUGAG

2

0 transposon4516 GAUUCCCAGACGGAGUUCAAAAUUUGCC

20 coding gene4517 CUCGAGGAAUACGGCCUUACCGC

2

0 transposon

4518 GCCGAACUUGAGACCGUCCCUGGACAA

2

1 Su(Ste)4519 UGCAGACGGCAGGCUUAUGGUCCACCCGA

2

0 no annotation

4520 GCCCGUUAUAUUUGGCUCGUCAAACG

2

0 transposon

LTR

diver24521 ACCCUGAACGCGCCCCGAUCUCGUC

2 no match

4522 CGACAAACGAUACCACACGAGAA

2

0 transposon

LINE

Rt1b

4523 UCACUGAUCGAGUCGUCCUGCGCGGAAG

2 no match

4524 UCCGUGAGGUUGCGCCUGAGUCCCGA

2

0 transposon

LTR

gypsy34525 UCAGACGCUUAAAUCUGUUGGACGAUCG

2

0 transposon

LTR

G4

4526 CGGGAGAACUUACCAGGUCCGAAC

2

1 ncRNA

4527 GGCCGACAUGAAGAUCACCUCUGCA

20 coding gene4528 GAUGUCGUAUCACCCAGGACGCCCGA

2

0 transposon

LINE

Rt1b

4529 GUAUACCGAAGAUGUGAGUGCUUAUU

2 no match

4530 UACGACGAGAACGAGAUCAUAGU

2 no match

4531 UGCUCUCGAAUGUAUGCCCGUAUA

2 no match

4532 UCCGAAACAAGAAGAGGACGACGA

2

1 transposonLow̲complexity

F-element

4533 AAGCCCGAUGAACCUGAAUAUCCGUUAU

2

0 ncRNA

4534 ACGAGUAAUAUGAGCGCCCAGAGUGAU

2

0 transposon4535 AAAGCCGAAGGCAGUGAUGGUGAC

2

0 no annotation

4536 CUCGGGUCAAU

2

0 coding gene4537 ACUCGCCGAAUCCCUGGGCCGAGGG

2 no match

4538 ACACCCAAAAAACUCAAAUGCCAUCGU

24539 ACUCACAAUCUCAGAUAAAACCCGA

2 no match

4540 CGAGUAAUGGUCUUCGGGGCGUGCAU

2

1 coding gene4541 CGUUCAAGGACCACGCGAGCCACGCCAC

2

0 transposon

LINE

Rt1b

4542 CAACGAGCGCAACCCCUGUCACUA

2 no match

4543 UUCAAGGUUACCCAGGAUGCUG

2 no match

4544 CAGACAGAGAGGCUCAUUUACGACCAC

2

1 transposon

LTR

McClintock

4545 CAACAAACAACACAUACCCGCUGGCC

20 transposon

LTR

GATE

4546 UUAGUGAGGUCUCCGGACGUGAUCACU

2

0 ncRNA

4547 UAAACCUGAAGAGAGCCCUGAAUC

2

0 transposon4548 CUUGAACGAGUGUUAUUGUGGGCCGGU

2

1 ncRNArRNA

4549 AGAGAGAAGACCCUCAGCCUACGAGA

20 coding gene

CG41521-RA¦CG41521

4550 GGGGACGUAACUCAGUGGAGAGCGCU

2 no match

4551 GCAUCGGUGGUUCAGUGGUAGAAUGCUC

20 ncRNAtRNA

4552 CACCGUAGAACCAGUAUCGACAUAGC

2

0 no annotation

4553 AGGGCAUAGUGGGAACUGGGAAA

2

0 transposon4554 UGUUUCAUCGUUAGACCGCUCGGGC

2

1 AT-chX

AT-chX-B

4555 CAUGGGUCGAUGAAGAACGCAGCAA

20 ncRNArRNA

4556 CUGGCAACAUGUCGAGCUCCCAGA

2 no match

4557 UAGUACAAUAGAUCCGACUGGGCC

24558 AAAUCUCGCGUCGGGCCGUACCCAU

2 no match

4559 ACGAACUAGAGCGACAUCGGGAAU
4560 UUGAUAGAAAAAGUACAACAGGGU

0 transposon

0 transposon

LTR

GATE
tRNA

LTR

opus
tRNA

LTR

DNA

LINE

ninja-Dsim-like

transib2

INE-1
Su(Ste)LINE

X
CG31762-RB¦aret

LTR

ninja-Dsim-like
Su(Ste)rRNA
CG5016-RA¦Mst57Db

rRNA
LTR

opus
CG1227-RA¦CG1227

LTR

invader1
CG12717-RA¦CG12717

rRNA
LINE

LINE

Rt1b

G2

0 transposon

LINEbaggins2

0 transposon

LTR

roo

2

0 transposon

LINE

Cr1a

4561 UCGAUAUUUUCUCCUCGGACCUUGAAAA

20 ncRNA

4562 AAGCCGGAUCCGUAACUUCGGGAU

2 no matchrRNA

4563 UGAGAUUGCAUGAUACACAGGCGGG

20 transposon

LINE

S

4564 UGAGACUUUAUCACACCUUGGCC

20 transposon

LTR

gypsy84565 ACGAGGCGGAUACGGUGACAGCGGUGG

20 coding gene4566 AACGCCCAGAUCAGCCCGCCCAAU

2

0 coding gene4567 UACAAUUACGUCACGAGCAACACA

2

0 transposon

4568 AUCCGCGGCUAGACGGAAAGACCCCGUG

2 no match

4569 UAAAGGUGGAAAUGAAGAAAGUACA

2 no match

4570 AACGAGAUUCCCACUGUCCCUAUC

2

1 ncRNArRNA

4571 GUACGAGAAGGAUGACAGACUUGA

2

0 coding gene

CG3691-RA¦Pof

4572 CGAAUGAGACCUUGGAGGACUGAAGUG

20 ncRNArRNA

4573 AAAUAGCCCGUAUUGCUUUGGCAGUA

2 no match

4574 CUUGAUCAAAGUAUCACGAGUUUGUUA

20 ncRNA

4575 GUCCUGAAGAUCGAUCCCAGCCUAU

2

1 transposon

LTR

Max

4576 ACCCUUGAUAAACGUUUGACUUUCGAUU

22 transposon

LINE

BS

4577 ACCGAGCGAAAAAAUCUUUGAAUC

2

0 transposon

LTR

Stalker24578 UCAACUGUGAGGAGGAUCCUCAA

2 no match

4579 CAGACACGAACGAAAUUUUGAUUA

2

0 transposon

LTR

Idefix4580 GAGAGUGGACGGGAGCGGCGGGGGCAAA

2 no match

4581 ACCCUGAGCGCGCCCGAUCUCGUC

2 no match

4582 AAAACCUGAGAUGAUCCUGAGUCG

2 no match

4583 GAAGAUAAAAACUGGAAAGCCCGGGC

20 transposon

LTR

Dm88

4584 AACUUAACUACGUUUUCCCGGGA

2

0 transposon

LINE

Doc3

4585 UCCCACGGAACACCAGAGCAAUCCC

2

0 transposon

LINE

G

4586 GGCCGACAUGAAGAUCACCUCUGCACU

2

0 coding gene

CG5016-RA¦Mst57Db

4587 UCCUCGAUAGUAUAGUGGUUAGUAUC

20 ncRNAtRNA

4588 GAGGCCCUGUAAUUGGAAUGAGUACA

2

0 ncRNA

4589 ACCGACUACAAAGAUGCCAUACGA

2

0 transposon

Unknown

RR50960

4590 AAUCAACUGUGAGGGGAUCCUCAA

2 no match

4591 CAUGAAUGAUGGACUGAAAUGGUCUGG

2 no match

4592 GGAGCCGGGCGUGGAAUGCGAGUG

2 no match

4593 UUGUUUAAAAUAAUCAAGCUGUUGCCC

20 transposon

LINE

Doc

4594 AUGGUGACCACGGGUGACGGGGAAUC

2 no match

4595 UGAGACUUUAUCACACCUUGGCCUAU

2

0 transposon

LTR

gypsy84596 ACUCGCCGAGUCCCGGGGCCGAGGGAGC

2 no match

4597 UAGUACAAUAGAUCCAACUGGGCC

2

1 transposon

LINEbaggins

4598 GGAGAGGCGCGAGAGGGACGGG

2 no match

4599 GGCUUUGAGAGGCGCCGUAGUUUA

2

2 no annotation

4600 CUUACCAGGUCCGAACAUAAGUGUGUA

20 ncRNA

4601 UGAGGCGCUCGGUGUCGGUGAAGG

2 no match

4602 AACCAAAUGAAAGACAUGAUUCGA

2

0 transposon

LTR

Quasimodo

4603 ACGCUGCGAUCCUCUCCAUGAGUU

20 transposon

LTR

ninja-Dsim-like4604 CUCCCGGGGAUACGCCUGUCUGAGCGUCGCU

2 no match

4605 AAAAUCCAUAGCAAGCUUCACACGC

2

2 transposonLow̲complexity

F-element

4606 CUGCGUAAAAUGUGGUGGCCAUCAU

2

1 transposon

LINE

G2

4607 CCGAAAGAUGGUGAACUAUGCCUGGGC

2 no match

4608 UAUCUGAGGAAGAGUGGACCGGA

2

0 transposon

LTR

4609 CCAACGAGCGGAACAUCCGGGGC

20 coding gene4610 UCAACUGUGAGGGGAUCUCAA

2 no match

4611 AGUGGCUUUGAGAGGCGCCGUAGUUA

2

1 no annotation

4612 GCAUCCGUUACUGUCGAGUCAAAAGAC

2

0 transposon

LTR

gypsy124613 AAACCUGAAGAUGAUCCUGAGUUC

22 transposon

LINE

Helena4614 AUCCUCUACACCCUGUUUACAGCAGACC

2

0 transposon

LINE

G2

4615 ACCUAUUGAAGAUGAGGCCCAGAUGU

20 transposon

LINE

Circe

4616 AGUCGAGAGUGGACGGGAGCGGCGG

2 no match

4617 AAAAACCUGAAGAUGAUCCCUGAGUCGC

2 no match

4618 CGUUCAAGGACCACGCGAGCUACGC

2

0 transposon

LINE

Rt1b

4619 AUUGAAGGAAUCCCAGCACCAGCGUU

20 transposon

LTR

flea

4620 GGCAUUGAGAGGCGCCGUAGUUACCACC

2

1 no annotation

4621 AUGGGAACACCGCGUGUUGUUGGCCU

2

1 ncRNA

4622 UGCCACACCAAGACAUGUUGUACCC

2

0 transposon4623 CCAGCCCGUGGACGGUGUGAGGCCGGU

2 no match

4624 GAGUCCCAAGAACUGGCAGAGCUACGG

2

0 coding gene

CG6008-RA¦NP15.6

4625 ACGGGUGACGGGGAAUCAGGGUUC

2

1 ncRNArRNA

4626 AUUUUACGUACCGCAGUUUCUCU

2

0 no annotation

4627 GUGAGACCGUACCCGAAACCGAC

2 no match

4628 AAACCGGAGGAAAGUGGGGAUGACGU

2 no match

4629 ACUCUUUCGUCAUGCCGAGG

24630 GUGGAGCCGGGCUUGAUUGGGAG

2 no match

4631 UGUUCGGGAGACACACGGCGGGUGCUA

2 no match

4632 AGUAUGUGAAUCCGGGGAAUCCAAA

2

0 coding gene

CG9862-RA¦Rae1

4633 CUGUGAUGCCCUUAGAUGUCCUGG

20 ncRNArRNA

4634 CAGAUCAACAAAGUACGAUGGGGAACC

2

0 no annotation

4635 ACAACCAUAAACACGAAACAGAAUUGCA

2

0 transposon4636 AGCGAUAUGUGGCGAGGUUAACCCGU

2 no match

4637 UGCAAUCGAAACGAGAAACUUCAUC

2

0 coding gene4638 UAUCCAUCAAUCCCAGCCCAAGUA

2

0 transposon

LTR

4639 UCGGCCCGAACCCUUCUGGUGUGUUU

2

1 transposonLINE

4640 ACCCUGGACGCGCCCGAUCUCGU

2 no match

4641 AAACCUGAAGAUCGAUCCCUGUAGUCGCC

2 no match

4642 GAGCCCGUUUCCGUUCCCGCUCCGCC

24643 ACACCACGAGAGUUGGUUGCACCUGAAGU

2 no match

4644 GGCACAAUUACCAGAAGAUGUUGACG

24645 GAGAGAUGGGCGAGCGCCGUUCCGA

2 no match

0 transposon

CG4199-RA¦CG4199
CG14561-RA¦CG14561
LTR

rRNA

rRNA

rRNA

1731
CG34241-RA¦CG34241

5SrRNA
LINE

LINE

UnknownF

R1-element

RR50960
CG41521-RA¦CG41521

0 coding gene
0 transposon

DM88

297
baggins

CG7809-RA¦Grasp65
LTR

roo

4646 GAUGAGACGGUGAAGGUGGUUCUGGCC

20 coding gene

CG30170-RA¦bgcn

4647 CGUAAACCAAAGGCCGUGAGUUCACCC

2

1 ncRNAtRNA

4648 CGCCCGUCGCUACUACCGAUUGAAUUA

20 ncRNArRNA

4649 AACGCAGGUGUCCUAAGGCGAGC

2 no match

4650 GCCGGCGGCUUUGGUGACUCUAGAU

2 no match

4651 CAUUGAUUGAUAGUGGCUCUCAAA

2

0 transposon

DNA

HB

4652 UCCGGGCCGUAGAGUUGCACGUCUUC

2

0 transposon

LTR

ninja-Dsim-like4653 ACGUACUAAAACAAAAACCUCCGCGUG

2

0 transposon

LINE

Rt1b

4654 GCCGUUACGAAAACAUCAUUUACG

2

0 no annotation

4655 CGCCAAGGUGACGCAGGGCUUCUCUG

2

0 coding gene4656 UAGACUAUGAAGGGACAUUUGCU

21 transposon

LINE

Cr1a

4657 UAAGGUGUUCAUCACGUUCCGCGG

2 no match

4658 UGCUAGAAGACGAUUUUCGGACCGAA

2

0 transposon

LINE

Cr1a

4659 UGCGAGAACAGCGGUUUGCACUAU

2

0 transposon

LTR

diver24660 AAGCGACAUGCUCGAGAUGACAACC

2

0 transposon

LTR

micropia4661 AAAUAGAACCUGAAACCGUAUGCGUAC

2 no match

4662 ACAUCGAGAAUCUCACGCCCACAGG

2

0 transposon

LINE

Doc3

4663 CAGACACUUGUACCAGCACAGCA

2

1 transposon

LINE

Rt1b

4664 AGGGAGUCUAACACGUGCGCGAGU

2 no match

4665 AGUGCGGUAACGCGACCGAUUCCGGAGA

2 no match

4666 GCACACAGAGGAGAGCAGAGAGAGCA

2 no match

4667 UACCAGGUCCGAACAUAAGUGUGU

24668 AAACCUGAACGAUGAUCCUGAGUCGC

2 no match

4669 GCUGCUCCGAAAACAAGGCCCGUCGU

2

1 transposon

LINE

G6

4670 UGCUCUCGAAUGUAUGCACGAUA

2

1 transposon

LINER1-element4671 GUCGGGCGCGGUUAGUACUUAGAU

2

0 ncRNA

4672 CAAUCUCAGAUAAAAACCCGAACGUGG

2

0 transposon

LTR

invader34673 UGCUCGAAUGUAUGCCCGAUAU

22 transposon

LINER1-element4674 GACGAGAGCGAUCGGCCUGGCGUG

2

1 transposon

LTR

GATE

4675 CCAAGAGUUCCCGUGGUAGGCAGUAGU

2

0 ncRNA

4676 GGUUCGAGACCGUCAGCACCCACCA

2 no match

4677 UGCAGACAUCUACUUCCCCCGCUCC

20 transposon

4678 UUACUUGUUCCCCGGAUAGUUUAGUUA

20 ncRNArRNA

4679 AUGAGUUUACCGUUAUGGAAGUGCUGU

2

1 coding gene

CG5183-RA¦KdelR

4680 AAAUACCAAAGACAACCACGACGA

2

0 no annotation

4681 AAAACCUGAACAUGAUCCUGAGUCG

2

1 transposon

4682 CAGGUCCGAAAAUAAGUGUGUAA

2

1 ncRNA

4683 UGUCCGCUAGCUCAUUUCCCGGGA

2

0 transposon

4684 ACGGUCAGACGGAAAGACCCCGUGCACCU

2 no match

4685 AGAACUCCGAUGGCGAUAGCAACUC

24686 ACUCGCCGAAUCCCGGGGCCAGGGAGC

2 no match

4687 CUGGUUAAUUCCGAUAACGAACGAGA

20 ncRNArRNA

4688 AAUUCCGAUAACGAACGAGACUC

20 ncRNArRNA

4689 CAACAACGUGGCGGCGUGAAGGGUUC

20 coding gene

CG6652-RA¦CG6652

4690 GCAUGGCCGUUCUUAGUUCGUGGAG

20 ncRNA

4691 UUUGCAAAAACGAGAGCGAUAGAGU

2

1 transposon

LTR

micropia4692 GCAGACCCAAGAAAAAUCCCAGACC

2

0 transposon

LINE

Doc

4693 UUGACAAUAGACGAAAUAUGAUCAGAA

2

0 transposon

LINE

Cr1a

4694 ACGCCCGAUACAUCAAGUCAGAGC

20 coding gene

CG42398-RA¦SteXh:CG42398

4695 UUUGGGUUCCGGGGGGAGUAUGGUUGC

22 ncRNArRNA

4696 UCACGCGGGAGACCGGGGUUCAAUUC

20 ncRNAtRNA

4697 AGAGGCGUUUGGAAGGCGGGCGA

2

0 coding gene4698 GGAUACUCGAAGACACCACGGUGA

2

0 transposon

LTR

ninja-Dsim-like

4699 UGAGAUAAGUUUCGUUGCCGAGAGGGA

2 no match

4700 GGAUCCUUAACUGUGAGGUCAA

2 no match

4701 AGCUUCAUCCAAGCGAAUUGUGCCCGA

2

1 transposon

LINER1-element

4702 ACGCACCGCACGUUCGUGGGGAAC

2 no match

4703 CAGGUCGGAGCGUGGGGAGAAUGA

22 Su(Ste)

4704 UUGAUUCAGCAAUUCCAGUGUUACUCGA

2

0 no annotation

4705 CCGUGGCGGCGACGACCCAUUCGAACGU

2 no match

4706 UACCGGGCGUGAGCAUCCACAAUGCGG

20 transposon

4707 CUGUUUCAUCGUUAGACGGCUCGGG

2

0 AT-chX

4708 GGUGACGUGUCCGAGCGGCCGAAGGUG

2 no match

4709 UAGUACAAUAGAUCCGACUGGGCCAU

2

1 transposon

LINEbaggins

4710 UAGACAGAAAAUAAGGGGACACGCCC

2

1 transposon

LTR

opus

4711 GCCAAUAUCACCGCGGAGACUGUCGC

2

1 transposon

LINE

Doc4

4712 GUCGGAGACUGGUAUGGUGACCCUGA

2

0 coding gene

4713 UCCGAUGUUCUGAAACUGCGUGACC

2

0 transposon

LTR

invader34714 CGACUCUACAUAACUUUCCUGAUGA

2

0 transposon

LTR

3S18

4715 CACAGAGUACGGGGCUUACUAAAG

2

0 transposon

LINEbaggins

4716 UACCACAAUAUAAUCCCAGCCCACA

2

1 transposonLow̲complexity

F-element

4717 CGUCCGUUGGAUUAUGCCUGAA

20 ncRNArRNA

4718 AACGAAACUUUGAAGGCCGAAGU

2 no match

4719 UGCGAUUCCGGCGCAGGUGACUCCGC

20 ncRNA

pseudogene

4720 UAUCAUCGUCGUAGAACAAGCCCGA

2

0 Su(Ste)4721 AAGUUACCGAUGACUUGGGACGUUGA

2

0 transposon

LTR

rooA

4722 CCUACCAAGGCAAUGAUCUAUAGCU

2 no match

4723 AGCUUGCACCAUCACCAUCACCAU

2 no match

4724 AUGACAGUUCACGAUUGAUUCCCCACG

2

0 transposon

LTR

opus

4725 UAUGGCUCUCUCAGUCGCUUCCCGGGGA

2

1 ncRNA

4726 GCCGUCUACAAGGCCCUGAGCGACCACC

2

0 coding gene4727 UGCUACGUACGCUGACGAUAUUGCCCU

20 transposon

LINE

BS

4728 AUUCCGUAAACGAAGCCCAAAGUU

2

0 transposon

LTR

Rt1c

CG2331-RA¦TER94

0 ncRNArRNA

5SrRNA

7SLRNA-RA
LTR

LINE

invader1

Helena
rRNA

LINE

Fw2

0 no annotation

rRNA

CG4434-RA¦CG4434

Su(Ste)LTRninja-Dsim-like
AT-chX-B

CG9389-RA¦CG9389

Su(Ste)rRNA
CG6058-RB¦Ald

4729 UCCAGAAUUCGAUUUUGUUGACAU

2

1 transposon

LTR

invader4

4730 CUGCCUAAAAUACAGAUUCCCACU

2

0 transposon

LTR

roo

4731 CAACAAAGCACCAGGACAUGACAUC

2

0 transposon

LINE

X

4732 UCUCAUCGUCGUAGAACAAGCCCU

2

1 Su(Ste)4733 GAACAAACUGAGAUCGAUGUGGAU

2

0 coding gene4734 CAAACCAAUAUGCUAUCUUGGCUGA

2

1 transposon

LINE

Doc

4735 AGCGUCGAACGAUUUCUGCCCACCUGA

2

0 transposon

LTR

Quasimodo

4736 AGAGACGUUAGAAAUCCCUUGGUGGA

2

0 transposon

LTR

invader64737 GUGUUGACACAAUGUGAUUUCUGCCCA

20 ncRNA

4738 AUAAGCAAAAUGCAGAACACCGGAGAU

2

0 transposon

LINE

Doc4

4739 AAAACGUCACGAUCCCACGGCUGGA

2 no match

4740 ACUCGCCGAAUCCCGGGGCCGAGGGU

2 no match

4741 CCCCUGAUCAAACAUCGUCUGAUGU

20 transposon

LINE

Cr1a

4742 UGACUCUCGAAUGUAUGCCCGAUAUAC

2 no match

4743 CGGUAUCUCGAAGAACAGCCAGACCCGC

2

2 coding gene

CG1873-RA¦Ef1alpha100E

4744 UCCGAUAACGAACGAGACUCAAAUAUA

20 ncRNArRNA

4745 UGAGACAGGGGCACAGACCAGGGGG

2 no match

4746 UGUACUACCCCUUCAUGACUCAAAGUA

2

1 transposon

LINEbaggins

4747 CCCGUACUCUGUGGUGACCAACA

2

0 transposon

LINEbaggins

4748 ACGAGGCAAACCGGGAGAAGUGAAAC

2 no match

4749 AGAAGACCCUUUUGAGCUUGACUCU

20 repeat

LSU-rRNA̲Dme

4750 ACGAGAUUAAGGCGACCCUCGGA

2

0 coding gene

CG12069-RA¦CG12069

4751 AUGGCUCUUUCAGUCGCUUCCCGGGAA

2

1 ncRNArRNA

4752 CGUCGCCGAGAUGGCCGAGCAGGUUGAUC

2

0 coding gene

CG17927-RA¦Mhc

4753 UACUUGUUCCCCGGAUAGUUUAGUU

20 ncRNArRNA

4754 GGAGCCAGCUACGAUACAUUAGCCCC

20 coding gene4755 ACCUUCUAGACCACAGCCAAUCCC

2

0 transposon

LINE

G2

4756 CAAAGGCAUGCCCGAUGUCCGCGAGAAA

2

2 transposon

LTR

opus

4757 CAGAUCGUUAUCCGAUUGCCCAUG

2

1 transposon

LINE

Doc4

4758 GGCUAUCAGCGGUAUUGGCUAAC

2

0 coding gene4759 ACACUCAUAAGGCCCACGAAGCAU

2

0 transposon

LTR

invader34760 GGUUCGUCCUGGGUGACCGCGUACC

2 no match

4761 GACACCGGAACAUAUGGCUGCGAG

2

0 transposon

LTR

Quasimodo

4762 CUGGGUCGGGGUUUCGUACGUAGC

2 no match

4763 CGUACCUGUUGGUUUGUCCCAUUAU

24764 AAUGUGGAGACGUCGGCGCGACCCC

2 no match

4765 UUCGCGAAGAAGGAGGACGAGA

2

1 transposon

LINE

G2

4766 CACUAUCGAAACGACGGAUAAGCCC

2

0 transposon

LTR

gypsy64767 CGCCCCAAGCACCCAUGCCACCACCCAC

2 no match

4768 ACUGCACGAAAUUAACCCGAACGCAC

2

0 transposon

LINE

Doc3

4769 CAGAGAGAUAUGGUAGAUGGGCUA

20 ncRNArRNA

4770 CCGGGGAGGUAGUGACGAAAAAU

2

1 ncRNArRNA

4771 AAAACCUGAGAUGAUCCUGAGUCGC

2 no match

4772 AAUAACCCCAAAAAUGAUCAUCGAGC

24773 AAACCAUUCGUAGACGACCUGCUUCU

2 no match

4774 CAGAAGAAAGAGACCGCAUUACCCAA
4775 CGAGAGGUCCGGGUAAACCGCUG
4776 UUCGAGAAUGUAUGCCCGAUAU

2 no match

4777 GGAUCCUCAACUGUGAGGGAAUCCUCAA

2 no match

4778 UGGGUGCGAGAGGCCCUGGGUUCAAU

2 no match

4779 ACCACCCUGAGCGCGCCCGAUCUCGUC

2 no match

4780 UUCGAGGUUGGCGAAGAGGAUCCCAAG

2

1 transposon

LINE

G2

4781 GCCGAAUUAAUCGCGAGGCUGCAAG

2

0 transposon

LTR

mdg3

4782 ACAAACAGAGUUCCCGAAUGAGA

2

0 transposon

LINE

Cr1a

4783 AGCUUCAUCCAAGCGAACUGUGGCCGAG

2

0 transposon

LINE

R1

4784 ACCACCCUGAACGCGCCGAUCU

2 no match

4785 ACCCCUUGACUAAACGGUUGACUUUCGU

2 no match

4786 GAUGGAAGACCGAAACAGUUCUGAC

20 ncRNA

4787 UAAUAACCCCGAAAAUGAUCAUCGAGC

2

0 transposon

4788 UCUGCUGCAACCGAAAGCAUAGGGAC

2

1 Su(Ste)4789 GGCUGCAAUUGUUUCCCGUGGGACU

2

0 transposon

4790 UCUACACCAAAGUAAGCCGUGCCAG

2

0 coding gene4791 CGUCGCUUUUUGAUCCUUCGAUGUC

20 ncRNA

4792 UAAACCGUCAUUCCAGCGCAAGUUGCCCCC

2

1 transposon

LTR

ninja-Dsim-like4793 GACACAACAACAUCCCGGGAAAUGAGC

2

0 transposon

LINE

Fw2

4794 AGAGCAUAAAGACGACAAAAGUGACA

2

1 transposon

LINE

Doc3

4795 CCGUUAAACAUUUGCGAGUAUUCGGA

2

0 transposon

LTR

frogger

4796 AGCUGCGAGAAUUAAUGUGAAUUGC

2 no match

4797 GAAACCAAAAUACAGAUCAACAAAG

2

0 no annotation

4798 GAAGAGAUAAGUCGUGCCACCCAG

2

0 transposon

LINE

I

4799 CCUUUACUGAGACAUGGUGACAUCGG

2

0 no annotation

4800 GGAUCCUCAACUGUGAGGGGAUCCUCGA

2 no match

4801 UCUGACGAGAACUCGAGCCACGUAGCC

24802 AACAGGCUGAUAACCCCCAAGAGCUCA

2 no match

4803 AGCAAGCUAACCCUCAGCUCCCAC

2

0 transposon

LINE

G2

4804 ACUGAAUAAACGAAAUGGAUGA

2

0 transposon

LTR

invader44805 CACAACAACAUCCCGGGAAAUGAGCU

20 transposon

LINE

Fw2

4806 GCGACCUCAGAUCAGACGUGGCGA

2 no match

4807 UCCGAAGAUAACGAGGAGCAGAGCUGG

2

1 transposon

LTR

4808 CUCGAACUUAGUUCAGCCCUACGAA

2

0 transposonLINE4809 UCUCCCCGCGGAAAGACGGAAAGACCCCA

2 no match

4810 CCCAGAAACACAGUGUUUGACGCCAAG

2

0 coding gene4811 GCAGCAAAUAAUUAAUAGUACACCGCC

2

0 transposon

Su(Ste)CG18397-RA¦ssp3

rRNA

CG7184-RA¦Mkrn1

CG6603-RA¦Hsc70Cb

0 ncRNArRNA

0 transposon

LINE

Doc3

2

0 transposon

LTR

Idefix20 ncRNA

rRNA

rRNA
LINE

Doc3
Su(Ste)LINEbaggins
CG31359-RA¦Hsp70Bb
rRNA

1 no annotation

297
I
CG18743-RA¦Hsp70Ab

LTR

diver2

4812 CUUCCAGAGAGCGUUUACCGAAA

2

0 transposon

4813 UACCAUGGUUGCAACGGGUAACGGGGA

20 ncRNA

LTR

Idefix4814 CGAGAUAGUACGAAUCGAUUACGAA

2

0 transposon4815 AACGGAGGUGUCCCAAGGCCAGCUCAGU

2

0 ncRNArRNA

4816 AACCCAGGUGUCCUAAGGCGAGCUC

2 no match

4817 CCAACUAAGGUCCCAAAGCGCGUGCUA

2 no match

4818 CCCAGAAACACAGUGUUUGACGCCAAU

2

1 coding gene

CG18743-RA¦Hsp70Ab

4819 ACUUGAGACCGCCCCUGGACGACCCAC

20 Su(Ste)

Su(Ste)4820 CUGAAUAGAGAGUUAAACAGUACGU

20 ncRNA

rRNA

4821 CAUAUCCGAGGCCCUGUAAUUGGAAUGA

2

0 ncRNA

4822 CCCUCAAGUAUCGCAGAACUCGCU

2

0 transposon4823 CUGUAUCACUGCUGGGGGUAGAGCACU

2 no match

4824 GGAAAAUAUGAAACUAUAGACGAAC

2

0 no annotation

4825 CACCGAAAUUGAUACGGAUGGAUCCGGC

2

1 coding gene4826 AUACCACCCUGAACGCGCCCGAUCUC

2 no match

4827 GCACACAGAGGAGGGCAGAUGAGAGCA

2 no match

4828 GGCGGGGCGCGGGACAUGUGGCGUA

2 no match

4829 GCCGGGCGACCUGGGUGUUCUGAUGGAA

2

0 coding gene4830 UAUUCGCCAGUCAGAGAGCCACU

2

0 transposonLow̲complexity

F-element

4831 GGAUCUCAACUGUGAGGGGUCCUCAA

2 no match

4832 CAAUCUCAGAUAAAAACCCGAACGUA

2

0 transposon

LTR

gypsy44833 AACAUGUCGAGCUCCCAGAACAAC

2 no match

4834 AUUGCAUUCACCCCAUUUGACAGA

2

0 transposon

LINE

G2

4835 GCGUCAACGAGGCAUUAACCAUAA

2

1 transposon

LTR

Dm88

4836 AAAACCGCUGAUCGACUCCCAGGAGGA

2

0 coding gene4837 AACCAGAGAUCUAGAGGGCCCAA

2

0 no annotation

4838 AAUUCCGUAAACGAAGCCCAAAGUUCGA

2

0 transposon

LTR

Rt1c

4839 ACGUACUAAAGCAAAAACCUCCGCGU

2

1 transposon

LINE

Rt1b

4840 AAGACAAUCUGGGAGGUGCCCGAGC

2 no match

4841 UCUCAUCGUCGUAGAAGAAGCCCG

2

1 Su(Ste)4842 UUCUAUAUGGAUGACCUAAUGACUGGA

2

0 transposon

DNA4843 UGAGAAAGUACUUUGAUCCAGCAA

2

0 transposon

LTR

4844 UGAUCCUCAACUGUCAGGGGAUCCUCAA

2 no match

4845 GACACCAGGAAGAUCGAUGAGGCC

20 transposon

LINE

Rt1b

4846 CCCGAAAGUAGAUGAGGUAGCGUACC

2

1 transposon

LINE

FW

4847 GGCUUUGAGAGGCGCCGUAUUACCAC

2 no match

4848 GCAACUAGCGACGCUGCUAUACCCAA

2

1 coding gene4849 CAAAACCGAUAUGCUAUCUUGGCUGA

2

2 transposon

LINE

Doc

4850 UGACACAGUAGAACUAAUCCUGAAGGC

2

1 transposon

LTR

gypsy

4851 GGCCGUGAUCGUCUAGUGGUUAGGACCCC

2

1 ncRNA

4852 ACAACCAGAGAUCUAGAGGGCCCAA

2

0 no annotation

4853 CGAAUCUAUGGGUGGUGGUGCAUGGCC

20 ncRNA

4854 ACACGUGCUACAAUGGUCGGUACAAA

2 no match

4855 GGAUCCUCAAGUGAGGGGAUCCUCAA

2 no match

4856 UGAUGUCGGCUCAUCACAUCCUGGG

2 no match

4857 GACUAGCUGGCCGAGUAUUUGAUAU

2

0 Su(Ste)

4858 AUUCCACGGAACACCCGAGCAAUGCC

2

0 transposon

4859 AAACUUACCAGGUCCGGACAUAA

2

1 ncRNA

4860 AAGGAGUCUAACACGUGCGCGAGAA

2 no match

4861 CCCGAUGAGAAGAAUGGCCCGUAA

24862 ACUCGCCGGAUCCCGGGGGCCGAGGGAGC

2 no match

4863 GAUGUCGUAUCACCCAGGACGUCCGACC

24864 CCGCCCCUGGACGACCCACGAUUUAACA

2 no match

4865 CUUCAUCCAAGCGAACUGUGCCCGA
4866 CGUACACAUAUUUCGCAACGUGACUGU

rRNA
LINE

I

rRNA
LTR

DM88

CG5024-RA¦CG5024

CG13577-RB¦CG13577

CG31973-RA¦CG31973

Su(Ste)HB
297

CG12717-RA¦CG12717

tRNA
rRNA

Su(Ste)
LINE

G2
rRNA

0 transposon

LINE

RR49783

0 transposon

LINE

INE-1

2

0 transposon

LINER1-element2

0 repeat4867 CACAAAGUUAUUCUUCUACCGAUGGAG

2

0 transposon

LTR

Rt1c

4868 AGAUCAAGAAUCCCGUGCCAAGA

2

0 transposon

LINE

Circe

4869 AUCAUAAAAAACUCUGACGACAACGAG

2

0 transposon

LTR

RR50207

4870 CACGCAGACGACACCAGCUCAGGG

20 coding gene4871 UCCGAAAACAAGGCCCGUCGCUAA

2

0 transposon

LINE

G6

4872 CUGUAACUCGGGUCAAUCUGUACCUCGGG

2 no match

4873 UCACCCAGGACGUUCGACCCACGA

2

0 transposon

LINE

Rt1b

4874 CCCGAAAGCAGACGGGGUAACGUACC

2

1 transposonLow̲complexity

F-element

4875 AGGAGGGAUAAUAAGGAUCCAAUC

2 no match

4876 AACCAUCAGAGACUGCGGUGGCCAA

2

0 coding gene4877 GGAAAACCCAGAAAAACCCGAUCAGAA

2

1 transposon

LINE

Cr1a

4878 UAGACAUGUAGAACACGAGAAUACA

2

1 transposon

LTR

HMS-Beagle

4879 GAUAGCGUACCGGAGUGGACUGCCGUU

20 ncRNA

4880 CACCCCAUGAGAGAUUGAGAAGACG

2

0 no annotation

4881 GAUGCCAGCUAGCAAUUGGGUGUA

20 ncRNA

4882 ACCCGGCCCGGACACGGACAGGAUUG

2 no match

4883 UCAAUUGGGACAGAGUCAUUUCGC

20 transposon

LINER1-element4884 UGAGAUGUACAAUGCUGCCGAG

2

0 transposon

LINE

G2

4885 CAGACCCAUCAACGUCAACCAGACGGC

20 transposon

LINE

INE-1

4886 GUGGCGAGCGAACCGGGACCAGG

2 no match

4887 CAUAUCCGAGGCCCUGUAAUUGGAAUG

20 ncRNA

4888 AAAAAUUACAAAGACGACGGCCCACC

2

0 transposon

4889 AGAUAGAAGACCCUCAGCCUACGAGA

2

1 coding gene4890 ACCGAAUUAAUCGCGAGGCUGCAAU

2

1 transposon

4891 AUUGGCGAGAGACCGAUAGCGAAC

2 no match

4892 AAAACUGUGAGGGGAUCCUCAA

2 no match

4893 UUGGUUGAACUCUAGAUAACAUGC

20 ncRNArRNA

4894 CUCAACUCAUAUGGGACUACCCCC

20 ncRNArRNA

HETRP̲DM

CG3820-RA¦Nup214

CG12717-RA¦CG12717

7SLRNA-RA
rRNA

rRNA
LTR

springer
CG41521-RA¦CG41521

LTR

mdg3

4895 ACUCGCCAAAUCCCGGGGCCGAGGGAGC

2 no match

4896 UUCGAGGACAAACGCUACUGUUCGGCC

2

1 transposon

LINE4897 CAAGAUAUGACCAAAGUAAAGACACU

2

0 transposon

DNA4898 AUGAAAACGAAGGUGACCUUUUUGG

20 transposon

LTR

flea

4899 CACUAUAACAACGGACCAGGGAACU

2

0 transposon

LINE

Doc4

4900 GGAACUAGGUGGAUCUGCCCAGGGU

2

1 coding gene4901 CAAGACAUCCGAUUAGUUCAUUUUCGA

2

0 transposon

4902 ACCGCAAAAAGUUAAUUUACAUCCUG

2

0 no annotation

4903 CCCCUGGACCUGUACUGACGCUCAUGCA

2 no match

4904 AGGACCGCGGUUCUAUUUUGUUGGUU

2 no match

4905 UGGGCUCCGGGGGAAGUAUGGUUGCAA

20 ncRNArRNA

4906 GAGAUUCCCACUGUCCCUACCUACUAU

22 ncRNArRNA

4907 CGCUAAUACCGGAUACGCCCUUU

2 no match

4908 UGAGACUACAUUGGCUAGCAACGAA

2

0 transposon

4909 ACUGUGAGGAUCCUCAA

2

1 no annotation

4910 CAAGAUAUGACCAAAACAAAGACACUA

2

0 transposon

DNA4911 ACGCUCCACAAGUACCUGAUCCGC

2

0 transposon

LINE

G

4912 GAUGACUAUAUCAUUCUCGGGAUUU

2

1 transposon

LTR

gypsy84913 GACCUAAAGACGAUUCCAAGCCCAA

2

0 transposon

LINE

G6

4914 UGUUUUCAUCGUUAGACGGCUCGGGC

22 no annotation

4915 AUGACCAAUACCCAUCGCAAAAGCCCA

22 coding gene4916 GUGAGCCAAACUUAUCAGAUCCGUCGA

2

0 coding gene4917 AAUAAACACACAGAACAUGCAGCAGCA

2

1 transposon

LINE

Doc3

4918 AGCGUCCGACGAAUACCCUGGGGGGG

2 no match

4919 CGAGAAGUUAAGCCAACUAAUCAAG

2

0 transposon

LINE

Cr1a

4920 AUCGAAUGGAGUGCCAGAACCCG

2

0 transposon

LINER1-element

4921 GGGAAGAAGACCCUGUUGAGCUUGA

2

2 repeat4922 AUAUCCAUCAAUCCCAGCCCAAGUA

2

0 transposon

LTR

4923 UGACAGUUCACGAUUGAUUCCCC

2

0 transposon

LTR

4924 AUCUAGGACUACCAUGGUUGCAACG

2

0 ncRNA

4925 ACACAGAGGAGAGCAGAUGAGAA

2 no match

4926 GAGAGAGGGGCCCGUGCCUUGGAAAG

2 no match

4927 UCUGAUGUUACGCCCGAAGAGAUAACU

2

0 transposonLow̲complexity

F-element

4928 AAAGAUGUCCAACAUGGCGAGUGA

2

0 transposon

LTR

opus

4929 UGCCGGGGACUCAUAGGAGACUGCCG

2 no match

4930 UCCAAUAUCACCGCGGAGACUGUCGU

2

0 transposon

DNA4931 UCCGAUAACGAACGAGACUCUGGCAUGC

2 no match

4932 ACCAUGGUUGCAACGGGUAACGGGGA

20 ncRNA

4933 ACUCGAAUAACGAGAUAAGACGGGC

20 coding gene4934 UCCAAGCGAAUCGAGGAUGCAAAUUC

2

0 transposon4935 ACUCGCUGAAUCCCGGGGCCGAGGGAGC

2 no match

4936 ACCCUUUCAUGCUUGGGAUUGUGAAC

2

2 ncRNA

4937 CACGAGGAGCUCGGGAUUCCAUGG

2

0 transposon

4938 CCCAGAAACACAGUGUUUGACGCCA

20 coding gene

CG18743-RA¦Hsp70Ab

4939 AAGACGGAUCACGACCAGGAGCUGUCC

20 coding gene

CG5954-RA¦l(3)mbt

4940 CUCGGCCGAUCGAAAGGGAGUCGGGUUC

2 no match

4941 UGGAAUGUUUUCGUCCCACCCAAGU

2

0 transposon

LTR

GATE

4942 UUCGAUUGCAGUACUUUCCUAUAA

2

0 transposon

LINE

Porto14943 UGCACCGAAAAUAUAUGCGAGGAAA

2

1 repeat4944 UCCGCAUCGAUGACAUGGUCGUUA

2

0 transposon4945 GCUUUAAUCACGAGCAAUGCGGUUA

2

1 no annotation

4946 AACUGAAUAAACGAAUGAUGACAC

2 no match

4947 UUGGGCCCGAACCCUUCUUGUGUGUU

2

1 transposon

4948 AAGUUCAAUAUCCCAAAUUCGGCGUGAC

2

1 no annotation

4949 UGCGAGAGAUUUGGAGGCAGAAG

2

0 transposon

4950 GUGUAACAACUCACCUGCCGAAGCAA

20 ncRNA

4951 UGGGGAUAACAGGCUGAUACCGCCCAA

2 no match

4952 ACAUCGAGAAUCUCACGCCCACAG

2

0 transposon4953 CAUGGUUACAACGGGUAACGGGGA

2

1 ncRNA

4954 GGAUCCUCAACUGUUAGGCUCAA

2 no match

4955 CCCGAAAAAAUCCCCCGGCUACGACCU

20 transposon4956 ACACGGGAAAACUUACCAGGUCCGA

2

0 ncRNArRNA

4957 GAUCUACUGCGUAGCGGACCAGCUC

20 ncRNA

7SLRNA-RA

4958 UGCAUAUCAUUCACGCCACGCUCCGACC

20 Su(Ste)

Su(Ste)4959 AAAAACUGAUAGACAGAUGGACGGAGC

2

1 Su(Ste)

Su(Ste)4960 UUCAAGGUUACCCAGGAUGCUGU

2 no match

4961 UGCUCUCGAAUGCUUCCCCGAUAU

2

1 transposon

LINER1-element4962 GCUCUCGAGAGACUACGUUCGGCAGA

2

0 transposon

LTR

invader1

4963 AAGAAAACUUAUUCGAGUAUGCAGCC

2

0 transposon

LINE

Doc3

4964 AGAAGAUCCAGUGGGACGAACCUAU

2

2 transposon

LTR

ninja-Dsim-like4965 CUAGCGAACUAAUGUCGCCCAAGGC

2

0 coding gene4966 UCGGAAUGCCGGGGCGAGGAGGAG

2

0 Su(Ste)4967 CUGCACUGCAUUCCGAAGGGCAGCAA

2

0 transposon

4968 UGACCCAACAUCCUCCCCGCGUUC

2

1 no annotation

4969 ACCCAUUACAUCCUAUACGGUCAUUU

24970 UAGAUACCCGUUACUCAGCUGGAA

24971 UAGGAACGAAAGAGGCGAGGACAAC

2

0 coding gene

CG40271-RA¦CG40271

4972 UUAAUUCCGAUAACGAACGAGACUCAA

20 ncRNArRNA

4973 UACCACAUCUAAGGAAGGCAGCA

20 ncRNA

4974 UACGUAAACAACCCCAGGCUGACUCCG

2

0 transposon

4975 ACCUCUAGAGCCACGGCGAAAUGUGCCA

2 no match

4976 CGAGAGGAACCGCAGGUACGGACC

20 ncRNArRNA

4977 GGGAUAAGGAUUGGCUCUGAAG

2

0 ncRNA

rRNA

G2
1360

CG8920-RA¦CG8920
LINE

LINE

Circe

I
1360

CG41573-RA¦CG41573
CG31287-RA¦CG31287

LSU-rRNA̲Dme
297
opus
rRNA

1360
rRNA
CG3354-RA¦Mst77F

DNA

transib2
rRNA

LINE

G2

trf
LTR

GATE

LINE

baggins

LTR

ninja-Dsim-like
rRNA

LINE

Doc3
rRNA

LINE

FW

CG14995-RA¦CG14995
Su(Ste)LTR

flea

0 transposon

LTR

GATE

0 transposon

LINE

INE-1

rRNA
LTR

Max

4978 UACAAUCUCCGAGCACGACCCCGAU

2

0 transposon

LINE

Circe

4979 UGCAAACGAACAAGAGACGGCCUGU

2

0 transposon

LINE

I

4980 UGAGACUACAAACGGAUUGCUGACCG

2

1 no annotation

4981 CGCAUCACAAACGAAAUUCGUACCG

2

0 transposon

LINE

Doc2

4982 UGAGACUACAGACGGAUUGCGGACC

2

1 no annotation

4983 AAAUACCGGCACGAGACCGAUAGUC

2 no match

4984 AGACUCAACACGAAGACCCAGUAU

2

0 transposon

LTR

Idefix4985 GACGUACUCGAGCGACAUGCGCCGGCC

2 no match

4986 AGCUUCAAUAAACGUUAACCCGCUAC

2

0 transposon

LTR

opus

4987 UCCGAAGACAACGAGGAGCAGAGCA

2

1 transposon

LTR

4988 UGAUCCUUCCUGAUGGCCCCGGC

20 transposon

LTR

gypsy124989 AAGCUUCAUCCAAGCGAACUGUGCCCG

2

1 transposon

LINER1-element

4990 UGGGUCGAUGAAGAACGCAGCAAACUG

20 ncRNA

4991 UGGAGCUAACCGAUACUAAUUGUCC

2 no match

4992 GGAUCUCAACUGUGAGGGGAUUCUCAA

2 no match

4993 UAGCCGUGUCGAUCUAGCUAUGUCCG

2

0 transposon

LINE

INE-1

4994 CAAGCUCGAUCGUGUGACUCCGG

2

0 transposon

LINE

Doc2

4995 ACAUUGCUAUGUUGACGCGGAUUGGAC

2

0 transposon

LTR

Dm88

4996 AGCCAGUUACCGAAGCUGCGGAUU

2 no match

4997 GACAACCAGAGAUCUAGAGGGCCCA

2

0 no annotation

4998 UCCUGAUGACUCUUCGACAUAUA

2

0 transposon

LTR

Dm88

4999 AAUCCGGACAAACACACAAGACCCGAUC

2

0 transposon

LTR

opus

5000 AUGACUCUGUCCCGAUUCAAGAAGUC

2

0 transposon

LINER1-element

5001 AAGGCGAUCGAGCGGCAACAGCGACGA

2

0 coding gene5002 ACACACCGCCCGUCGCUACUACCGAUU

20 ncRNA

5003 UGCUCAUUCCGAACAUACACCGACAAA

2

0 transposon

LINE

Doc

5004 CAAACCGAUAUGCUAUCUUGCCUGAU

2

1 transposon

LINE

Doc

5005 GCUCAUGGGUCGAUGAAGAACGCAGCAA

20 ncRNA

5006 ACCAUUUACAAAAUGUAUUCCGACC

2

0 transposon

LINE5007 ACCGUUUACACAUUUAUAUUUAUC

2

0 transposon

DNA5008 GCCUCGAAAGCCAGAUAGAGCGGC

20 transposon

LTR

roo

5009 AUUGCAGGUUCGUGUCCUGUCACGGUC

2

1 transposon

LINE

Doc

5010 UUUGAGAGGCGCCGUAGUUACCAGA

2

2 no annotation

5011 AUCAAUCGCUGAUAAGGCACCGGGA

2

0 transposonLINEaccord2

5012 UGCGCGAGGCAAAGAGACUAGCACUU

2

0 transposonLINEaccord2

5013 CACUAUCAGACAGCAACAUGACC

2

0 transposon

LTR

McClintock

5014 GAGUCAAACAUCCAAGUACCAGAUA

22 transposon

LTR

frogger

5015 AAACAUGAAAAGUGUAUCCAAGGGA

2

0 transposon

LTR

Dm88

5016 UGCCAACACAUUUUGGAGACCCAC

2

0 transposon

LTR

Stalker45017 CUCAGCGAUGUAUGGGGCAAGUCA

2

0 coding gene5018 GGAUCCUCAACUGUGAGGGGAUCUUCAA

2 no match

5019 GAUACCGCCCUAGUUCUAACCAUAAAC

2

0 ncRNA

5020 GCUAGAGAUUGUUUUCGUCGAGCCGA

2

0 transposon

5021 UUCCGAUAACGAACGAGACUCAAAUAU

20 ncRNA

rRNA

5022 CAACCGCACGACCCCCAGCUACGUGGCC

2 no match

5023 AGACGACGGCGGGGGCCCUGGGUAGA

2 no match

5024 CAGCGACCGAUAGCGAACCAGU

2 no match

5025 CCCAGAAACACAGUGUUUGACGCCUAA

2

2 coding gene

CG18743-RA¦Hsp70Ab

5026 UGACGAAUUUAGUUACAAGCAGACAU

2

0 no annotation

5027 GCAACCGAUAACGCCCACCGAGGU

2

1 transposon

LTR

5028 GCGGAAAGAGAGCGAUCUUGGCCC

22 transposon

DNA5029 CGAGAGCUGAAACACCAACGGAAUAA

2

1 no annotation

5030 AAACACGGGAAAACUUACCAGGUCCGAA

2

1 ncRNA

5031 CAGAUCAACAAAGUACGAUGGGG

20 no annotation

5032 UGAAACUGAAGCACGAAUUGUCCAACA

2

0 transposon

LTR

Dm88

5033 ACCCGAAGAAGACUCUACUCGCGUACA

2

1 transposon

LINE

Circe

5034 CAUGCAGAUCGUAUGGUCUUGUACC

2

0 ncRNA

rRNA

5035 GAUAACGAACGAGACUCAAAUAUA

20 ncRNArRNA

5036 GCCAAGCGAAAGGUGCCGGCAGCGGGUG

20 coding gene5037 AACGAGAAUAUACACAGGGGCUU

20 transposon

LINE

Doc3

5038 AACCAAAUGAAAGACAUGAUUCGAC

2

0 transposon

LTR

Quasimodo

5039 GACCCAUUCGAACGUCUGCCCUAUC

2 no match

5040 CAGCGAUGUGUGGGGCAAGUCAAA

21 Su(Ste)

Su(Ste)5041 UCCUCAACGAGAUUCAGAUGAUCCG

2

0 coding gene

CG9206-RA¦Gl

5042 CGACCUGCUGCUGAUCAAGAACU

2

0 coding gene5043 CAAGUCAAUCGAUUGGAGAGGUG

20 transposon5044 AGGGUGCAAGCGUUAAUCGGAAUU

2 no match

5045 UACCAUGGCGAUCACGGGUAACGGG

2 no match

5046 CAACCAGAGAUCUAGAGGGCCCAAU

25047 ACGCGACCUCAGAUCAGACGUGGCGAC

2 no match

5048 UUUGACAAAAUAUGCCCUUCAGCGUA

20 transposon

DNA5049 GGGUAGUACAAUAGAUCCGACUG

2

0 transposonLINE5050 GGAUACUAAGCAGGGACGUUAAUGAA

2

0 coding gene5051 ACAUUCGUAACCGAGCGACUGUUC

2

1 transposon

LTR

GATE

5052 AGGGCUGCAAUUGUUUCCCGUGGG

20 transposon

LINE

Fw2

5053 UUCGGGAUAAGGAUUGGCUCUGAA

20 ncRNA

5054 CACCAGGAUUAUCAACCCGUGUUA

2

1 transposon

LINE

Cr1a

5055 UAUGAAUCGAGUAAAAACUGCAGG

2

0 transposon

LTR

diver25056 GCAUCGAGAAUAUUACACAGCCAU

2

0 transposon

LINE

Doc

5057 AAGGAAAUGACCCAGUUGGCCAAGGAG

2

0 transposon

LTR

Stalker5058 AAGGCAAUGAUUGUUGAGUGCUUGA

2

0 transposon

DNA5059 GGAACGACCAUAAAGAAGCCGUCGAGA

20 ncRNA

rRNA

5060 GACCAGAGUCCCAGUUGCCAGAUCCU

20 coding gene

CG33092-RA¦CG33092

1731

rRNA

CG40084-RA¦CG40084
rRNA

rRNA
Doc
1360

CG42398-RA¦SteXh:CG42398
rRNA
LINE

Cr1a

ninja-Dsim-like
1360
rRNA

CG5060-RA¦CG5060

CG30278-RA¦CG30278
LTR

3S18

1 no annotation
1360
baggins
pseudogene

rRNA

1360

5061 CAAGGACCAAUUGGAGGGCAAGU

2

0 ncRNA

5062 GAGCCGUCUAACGAUGAAACAAAGAUC

20 no annotation

5063 AUGCUCUCGAAUGUAUGCCCGAUAUAC

2

0 transposon

LINER1-element5064 UGCAUUUCCAAAAUUGACCUCAAAGA

2

0 transposon

LINE

Circe

5065 CAGAUGCCCGUUACUCAGCUAGACCGA

2

0 transposon

LINE

INE-1

5066 UAAAAGGUGACCGGCAACGACGUU

2

0 no annotation

5067 UCGGCUCGUCGCAUCCUGGGGCUCG

2 no match

5068 CUAACCGUAAAAUAAUUGCAGGAGG

2

DNA

Ivk

5069 ACCCUGAACGCGCCCGACCUCGUC

2 no match

5070 ACCGGACGGGCCUAGAGUUAUUCCCCC

2

0 coding gene5071 AAACUGAAAAGUGUAUCCAAGGGA

2

1 transposon5072 CGGCUAGCUCAGUCGGUAGAGCAUGA

2

0 ncRNA

5073 GUAAGCGCGGGUCAACGGCGGGA

20 ncRNA

5074 AAGAGUACAACGGAACAAGAACUA

2

0 transposon

LTR

gypsy85075 AAAAAUUCAAAGCGACGGCCCACC

2 no match

5076 UGACCGGGGGGCAUUCUCCACUGCGC

20 transposon

LINE

G2

5077 AGAUCAGUGAAAUCAUCUUCCGGGAA

2

0 transposon

LTR

micropia5078 CAUGUCAUAACAACUAAACCCGAAGACC

2

0 transposon

LTR

Quasimodo

5079 AGUUCCGACCAUAAACGAUGCCGACCGG

2 no match

5080 AACCAUUCGUAGACGACCUGCUUC

2 no match

5081 UCCCACGGAACACCCGAGCAAUGCCAU

2

1 transposon

LINE

G2

5082 GACGUCAUGACGCUGAGCGACCAC

2

0 transposon

LINE

F

5083 CGUACGCUGACGAUAUUGCCCUGU

2

0 transposon

LINE

BS

5084 AUGGCACCAUGGACGAAUAUUGCAAC

2

0 transposon

LTR

HMS-Beagle

5085 GUAGACAAAAUAAACGAAGUUGA

2

0 transposon

LTR

roo

5086 UUAUCCUUUGCUUGAUGAUUCGA

2

0 ncRNA

5087 UGGGAACACCGCGUGUUGUUGGCCUU

2

1 ncRNA

5088 GAGCGGAAAGAGAGCGAUUUUGGC

20 transposon

DNA5089 AUGUGACGCCAGAGGUAGACGAC

2

0 transposonLINE5090 AAAACAUGGCCGCAGGAGCUGAUACCC

2

0 coding gene

CG7070-RA¦PyK

5091 UGGGGGCAUUAGUAUUACGACGCGA

20 ncRNA

rRNA

5092 ACCACCCCUGAACGCGCCCGAUCUCGU

2 no match

5093 CUCAUCCUGGCAACAGGAACGACCAU

20 ncRNA

rRNA

5094 GCUUGGACUACAUAUGGUUGAGGGUUG

20 ncRNA

5095 AGAGCAGAGAACCCUCUAAUUCGGCCC

20 transposon

LINEbaggins5096 GCCAGAGAACCCUCUAAUUGGGCCCGA

2

0 transposon

LINEbaggins

5097 GGAUCCUCAACUUGAGGGGAUCCUCAA

2 no match

5098 UCGAGUGAGACCGGGGGGCAUUC

2

0 transposon

LINE

G2

5099 CGGGUAACGGGGAAUCAGGGUUCGAUU

20 ncRNA

5100 CUGGCAGAGACGGCGUCGCUCGAG

2

0 transposon

LTR

Quasimodo

5101 CAAGCUAGACUAUGUAUCCCCGGGUAG

2

1 transposon

LINE

Doc

5102 UCUGAAACAAGAAGAGGACAACGA

2

1 transposonLow̲complexity

F-element

5103 UGGGCUCCGGGGGAAGUAUGGUUGC

20 ncRNA

5104 GGAUCCUCAACUGUUAGGGGAUCCUCAA

2 no match

5105 AAUACAUGCCGACGGGCGCUGACCCCU

2 no match

5106 AAGACCGUAAACGAAAAGCUAAGAAU

20 transposon

5107 AACGUGAAGUGGCAUCGCGAUUGCU

20 coding gene

5108 AGAUUUACAAUUUGGACGACGGAUGC

20 transposon

DNA

invader25109 ACAUUCAUAACCGAGCGACUGUUCAUA

2

2 transposon

LTR

GATE

5110 ACCUUAACGAAACCAGGGACAUA

2

0 transposon

LTR

gypsy45111 CUAAGGAGGGAUGAACCGGGCCA

20 ncRNA

5112 CUCGUCCUAAACUCGGAGGUGGACUCGC

20 transposon

LINE

X

5113 ACCGUAGACAGGUGAUGCCGAUGCAA

2

0 transposon

LTR

springer

5114 AGCGAAAUGACUCUGUCCCGAUUCAA

2

0 transposon

LINER1-element5115 ACAUAAGAAAGCCGACAUCCCGACAUGU

2

0 transposon

LTR

GATE

5116 GGAUCUCAACUGUGAGGGGAUCCCCAA

2 no match

5117 UGCUCGAUCAAAAGGCCCUGGCAAGU

2

0 transposon

LTR

Dm88

5118 UCGGAGUAAUGCCAAUGGAGAGCGA

2

0 transposon

LINER1-element5119 UGUUUCAGAGCGUUUGCCAGUUUCC

2

1 transposonLow̲complexity

F-element

5120 GCACACAGAGGAGAGCAGAUGAAA

2 no match

5121 CGGGUAACGGGGAAUCAGGGUUCGAU

2

0 ncRNA

5122 ACCAGAAUGAGACUAGACUUGGAGGA

2

0 transposon

LINE

RR497835123 UUCGGCCCGAACCCUUCUGGUGUGUU

2

0 transposon

LINEbaggins

5124 ACGACGAAUCCCGAAGCCCAGAA

2 no match

5125 GCCAAGGAGAUGAGCACGGGCAAG

20 coding gene

5126 ACGACUCGGGUAUUACCUUUUUCGU

2

1 transposon

LTR

opus

5127 ACCAGAAUGAGACUAGACUUGGAG

2

0 transposon

LINE

RR497835128 GCGGGACAUGUGGCGUACGGAAGAC

2 no match

5129 AAACACUUUACCUCGAGGAACCGUUAC

2

0 transposonLINEaccord2

5130 GAGAAACUGACAAAGGCCCUUGAA

2

0 transposon

LTR

gypsy85131 AUGAAACCCAGAACAAUAUAAACGGCA

2

0 transposon

LTR

HMS-Beagle

5132 ACUACAUUGAUGCUUAUCCCGAAGC

2

0 transposon

DNA

Ivk

5133 CUUAAAGGAAUUGACGGAAGGGC

20 ncRNA

5134 ACUCGCCGAAUCCCGGGGCGAGGGA

2 no match

5135 UCCUACGAGAUGGAAGCUUAUAUCGCG

2

0 no annotation

5136 CCGAAGAUGACCAAGUUGGCUACCGAU

2

1 transposon

5137 AGGGAGUUUGACUGGGGCGGUAC

20 ncRNArRNA

5138 GAGUACUUCAGCCAGACACUGGA

2

0 Su(Ste)

Su(Ste)5139 UCAACUGAGGGGAUCCUCAA

2 no match

5140 GAGCGCACGUGUUAGGACCUGAAA

2 no match

5141 CAAGAUAUGACCAAAGCAAAGACACA

2

1 transposon

LINE

Cr1a

5142 CAAUAUCCUAUUGAGUUGCACACUGA

2

0 transposon

LTR

micropia5143 AUAAAUAAAAGGUGACCGGCAACGA

2

0 AT-chX

0 transposonrRNA

CG40635-RA¦CG40635
LTR

Dm88
tRNA
rRNA

rRNA
5SrRNA1360
R1-element

rRNA

rRNA

rRNA

LTR

IdefixCG31988-RA¦CG31988

7SLRNA-RA

rRNA

CG18743-RA¦Hsp70Ab

rRNA

LTR

gypsy6AT-chX-A

5144 AACUUGAAAAUCCAGGUGAUCCGGC

20 transposon

5145 ACCGUCAAGGAUGGCAAGACCCUCAC

20 coding gene5146 CCCGAAAGCAGACGGGGUAACGUAC

1

1 transposon

5147 UACUUCGUUACAACCCAUUUGGAA

1

1 no annotation

5148 ACCGAAUUAAUCGCGAGGCUGCAAAA

1

1 transposon

5149 AACCGAUGGGCUUGGAGUAUUUC

1

2 repeat5150 UAUGGCUCUCGUCAGUCGCUUCCCGGGGA

1 no match

5151 UAAGGAUGAUGAUACCGACUAA

15152 AACUGUGAGGGAUCCUCUAA

1 no match

5153 CCUCUCGAGCAUCGAUGCAAGCAG

1

0 transposon

5154 CAAGACGGACGAGUAGAACACGGCAC

1

2 no annotation

5155 UCGGAAGUGCGCGAGGUUCCUAA

15156 CAAACCAAUCCCAACCAAACCCGUCU

15157 CAAUCUACAAAGAGCUGAAAUCCG

LTR

GATE
CG12101-RA¦Hsp60

Low̲complexity

F-element

LTR

mdg3
trf

0 no annotation
LINE

INE-1

0 transposon

LTR

GATE

1 transposon

LINE

G2

1

2 transposon

LINE

F

5158 AAGUGAGGUCUCCGGACGUGAUCACUG

1

1 ncRNA

5159 UUCUUGAGAAUUUGGACGCCGUUUAU

10 transposon

LINE

Cr1a

5160 UACGAGUAGGAUAUCGAUCUGGUGG

10 transposon

LINE

G6

5161 CGCCCCCGACAACGCCGCCUUCGAGU

1 no match

5162 AGCUUCAUCCAAGCGAACUGUCCCCGA

1

1 transposon

LINER1-element5163 GAUUCCGGAGAGGGAGCCUUGAGAAC

1 no match

5164 AAGCCCCGUACUCUGUGGUGACCAA

1

0 transposon

LINEbaggins

5165 GGAACUCAAAGACAAGCUAUGUAACC

1

0 transposon

LINE

G2

5166 AAAGGAAUUGACGGAAGGGCACCACCAG

10 ncRNA

5167 GCCGAGAAAAAGGAACACGAAACGA

1

0 transposon

LINE

Rt1a

5168 CCAGAUGAUAUUCCGAAAACAGCCGUCA

1

0 transposon

LINE

Doc4

5169 ACCAAUCCCAACCAAACCCGUCAAA

1

0 transposon

LINE

G2

5170 CCCAGCUCGGGGAGGUAGUGGCGAAA

1

1 ncRNA

rRNA

5171 ACACGCUCUCCCGAGCACCGGUUGCCAU

1

0 coding gene

CG30362-RA¦CG30362

5172 GGUUAAUUCCGAUAACGAACGAGACUCA

1

0 ncRNArRNA

5173 GGAACACCGCGUGUUGUUGGCCU

10 ncRNA

5174 UUGGUCAACGAAAUGGGUUUUGGU

10 transposon

LTR

DM88

5175 GUGAUCGAUACGCCCCCUCAGAGUC

1

0 transposon

LTR

Max

5176 AGUAAUAUGAGCGCCCAGAGUGAUUA

1

1 transposon

LTR

opus

5177 GGAUCCUCAACUGUUAGGGAUCCUAA

1 no match

5178 GCAAAUUCAUUCACCUUGGGAAUGGC

1 no match

5179 UCAAGCCAAAGAGGGAGCCCGGAAU

1

2 transposon

LTR

flea

5180 CGUUCACAGACUACCUAAAAGGCGC

1

1 transposon

LINE

Doc4

5181 AGUCCAUCGCCAGAGCCAACGACAUC

1

0 coding gene5182 CAAGUUCUCGGCUGAUCAGUACCCCG

1

1 transposon

LTR

Quasimodo

5183 CAAACCAAUCCCAACCAAACCCGUCAAAU

1

1 transposon

LINE

G2

5184 AACCUGAAGAUGAUCCUGAGUCGCUA

12 transposon

LINE

Helena5185 AAACCUAGAAGAUGAUCCUGAGUCG

1

2 transposon

LINE

Helena5186 AGGAGGGAUAAUAAGGAUCCAAUUC

1 no match

5187 UUCGGGGCUGAUCCGGGUUGAAGAC

1 no match

5188 AGCAAAGCACCGAGGUAGAGCUGGC

10 coding gene

CG5175-RA¦kuk

5189 UCCGCCCGUGGAGAAGUACAUCCCCCG

1

0 coding gene

CG13591-RA¦Ssl

5190 AAGACGAGAAGACCCUAUGGUGCUUU

1 no match

5191 UUCCGAGGAACCAUUGAUCCAGCUG

1 no match

5192 CUGUAACUCGGGUCUGUAACUCGGGUC

1 no match

5193 AUGCGCAGCGCUUUGGCCAGGAGGUGU

10 coding gene

CG31151-RA¦wge

5194 UGUGAUGCCCUUAGAUGUCCUGGG

10 ncRNA

rRNA

5195 AAACCAAAGCUUUUUGGGCUCCGGGGGGA

1 no match

5196 AUGCCGAGAGCUGAUGACGAGCUUU

1 no match

5197 GAACAAUCAGUGGUUUCCCUAAG

1

1 transposon

5198 UGGUUAAUUCCGAUAACGAACGA

1

0 ncRNA

5199 UGAUACUAUAAAUUUCGGCCUGCUA

10 transposon

LINE

Doc3

5200 ACGCAUCCUAGAAUCGACCGACCA

1

0 transposon

LTR

flea

5201 GGACGGAGCGAUGUUCGGGCCCAG

1

0 repeat5202 UUCCGACGACUGUGCUACUCCAUCC

1

0 transposon

5203 GCGAAGGUGGCGGAAUUGGACA

1 no match

5204 UGGAUACUAAGCAGGGACGUUGAU

1

0 coding gene

5205 AUGUUAAACAAUGUACCUGUGAUCA

1

0 transposon

5206 UUAUGUUAGUUACUUGUUCCCCGG

10 ncRNA

5207 AGUACUGGGAUGACGUCAUAUUUU

1

0 transposon

LTR

Max

5208 CCGGGGUCCGGUGCGGAGUGCCCUUCG

1 no match

5209 UACUGUUUGGAGGUGUACUGACCCAG

1

1 transposon

LINEbaggins

5210 UUAUAAAACUGAUUCGGAUCCUGU

1

0 transposon

LINE

Cr1a

5211 AAAACCAGAAGAUGAUCCUGAGUC

1

0 transposon

LINE

Helena5212 GAAUCUAACAAGGCCCUGCAGGGAAC

1

0 transposon

LTR

diver25213 UUAUAAGGAUGAUGAUACCGACUA

1

0 no annotation

5214 ACCUUGAGCAUAUAUGCUGUGACC

10 ncRNA

5215 UACAUCGAGAAUCUCACGCCCACAGGAA

1

0 transposon

LINE

Doc3

5216 CACAUACCUGUGACUACUCCUGAGG

1

0 transposon

LINE

TART

5217 GUCAAGUGUACGAGUUUUCCCAGA

1

2 coding gene5218 GGCCGAUCGAAAGGGAGUCGGGUUC

1 no match

5219 AAACUGAACGAGUUACUGCACUUCCCC

1

0 coding gene

5220 AACAAUUCAAUUUGAGAGCCAGUAC

1

0 transposon

LINE

Cr1a

5221 CAAGCCGAGAGGUGACCCAGUUGAGA

1 no match

5222 UACCGGACGGUAUGCAACCCUUAUAAGC

1

0 transposon

LTR

gypsy125223 UCAACACUGAGAACUGGGACUGCCUG

1

0 transposon

LTR

GATE

5224 AAAGCCUGAAGAUGAUCCUGAGUCG

1

1 transposon

LINE

Helena5225 UAAUAGUCAUGCGAGGCGAACCGGGUGAA

1 no match

5226 AAUGGAUUAACGAGAUUCCUACUGUCCCU

10 ncRNA

rRNA

rRNA

5SrRNACG14200-RA¦CG14200

LTR

DM88
rRNA

trf
LTR

GATE
CG12717-RA¦CG12717

LINE

Cr1a
rRNA

rRNA

CG6502-RA¦E(z)CG3213-RA¦CG3213

rRNA

5227 GCUGCAGAUCGAGAGGUCCCCGGU

1

1 ncRNA

5228 UGCCCCGUACUCUGUGGUGACCGACA

1

1 transposon

LINEbaggins5229 GCUCCGAAAACAAGGCCCGUCGCUAAA

1

1 transposon

LINE

G6

5230 UACCCUACUGAUGAUGUGUUGUUGCC

1 no match

5231 GGUGCCAGGCCCGUAUAACGUUAAUGAUU

10 ncRNA

5232 CAGUGACGGAGCCGGACGACCUCGA

1

0 transposon5233 GACAACCAGAGAUCUAGAGGGCCCAAG

1

0 no annotation

5234 CUGAAGUUGAGUGGUGAAUCCGUGU

1

1 coding gene5235 UCUCAGUAAAAUUCUGUCGAGCGC

1

2 transposon5236 CAUGGUUGCAACGGGUAACGGGGAA

10 ncRNA

5237 CUCGCCGAACCCCGGGGCCGAGGGAGC

1 no match

5238 UCCAGCCCAAUUUGGUGACGAACGCGA

1

0 transposon

LTR

HMS-Beagle

5239 UGUAAACGGUAGCUAAUUCGAGC

1

0 transposon

LINE

Cr1a

5240 ACGGAAGCAAGGCUGCAAUUUGACCUC

1 no match

5241 UGAGACUACAAACGGAUUGCGGACCA

1

1 no annotation

5242 GUGUUAUUGUGGGCCGGUACUAUU

10 ncRNA

5243 CAAUCCGAUACAUUUCACGCCGA

1

0 transposon

LINE

INE-1

5244 GAACCCCGUUGGUGUACUGGAGGAG

1 no match

5245 GUGGCGGCGACGACCCAUUCGAACGU

1 no match

5246 AGAUGUACCGGGGCUGCACGCGCGCU

1 no match

5247 UCCUGGGUAUUCUCCUGUUGUCCAG

1

1 transposon

LTR

Dm88

5248 ACCAGAAAAAUCCCCAGACCUGAUCGA

1 no match

5249 UGACUAUGAAGAGACAUUUGCUCC

1

1 transposon

LINE

Cr1a

5250 UCAAGCGAGAUAGAGCGAUGUUGA

1

0 transposon

LTR

Max

5251 AAACAACGACCCGCUACCGGAGGAC

1

0 transposon

LTR

opus

5252 UCGAUAUUAUCCCAGCACUACGAC

1

1 no annotation

5253 UGCGAACGAUUUGGCUAGAGCA

1

0 no annotation

5254 CCCUUAGAUGUCCUGGGCUGCACGCG

10 ncRNA

5255 UAGUUAAUUAAGAGGAUAUAUAAUA

1

0 transposon

LTR

invader25256 GAAGGGGGGCUCGAAGAUGCGGGGUAA

1

2 transposon

LTR

opus

5257 CUGCUUCGACAAGACGGGGACACUUACC

1

1 coding gene5258 UCACCAUACCCGACACUUACCCCA

1

0 transposon5259 GGAUCCUAAACUCCUCAAACUGUGAGGGUCAA

1 no match

5260 AAGGACCAAUUGAGGGCAAGUCU

1 no match

5261 UUCACCGAAAAUAUAUGCGAGGAGA

1

1 repeat5262 AGCAAUUCUAGAGAACGAAAGCGAU

1

1 transposon

LTR

flea

5263 CACUGAUGAAGAAGAGAUGCCCAG

1

0 transposon

LTR

ninja-Dsim-like5264 AGUAGAGAGUGAUGCCGAGUAUUAAAC

1

2 no annotation

5265 UCCUCAACUGUAAGGGGAUCCUCAA

1 no match

5266 GUAGGUCGAGAUCAGCUGCCGUGUU

1

0 transposon

LINE

G2

5267 UUCCGAUAACGAACGAGACUCAAAUAUA

10 ncRNA

5268 UGUGCUAGAAGACGAUUUUCGGACC

1

0 transposon

5269 GAACGAGUGAACUGGCAACAUUUCGAG

1

1 Su(Ste)

5270 GGCGUGUGUUGACGCGAUGUGAU

1 no match

5271 AACGAACUAGAACAAUUGGCUCAGUGU

15272 AGUACCUGAAACCGUGCGCUUACAA

1 no match

5273 AACCAGCGCGGGUAAACGGCGGAGU

1 no match

5274 ACCAGCGUUGGAUUGUUCACCCAUG

15275 GAGGAGUGGCGAAAAGAACCCCGGG

1 no match

5276 AAAGCGAAUGAUUAGAGGUCUU

15277 UCCGGUGCACAUAUACCGAGGCCAACGA

1 no match

5278 CAAUCUCAGAUAAAAACCCGAAC

1

5279 AGAGGGACUAUCGGUUUCAAGCCGAU

1 no match

5280 UUUCCUGAUGAAAGUAUACACGAGU
5281 CAAGAUAUGACCAAAGCAAAGACAU
5282 ACCCUGAACGCGCCCAAUCUCGUC

1 no match

5283 GAAGCCGGCGGGAGCCCCGGGGAGA

1 no match

5284 GGUCCGAGAGGUCCCGGGUUCAAAU

1

1 ncRNA

5285 UCGAGCGGCAUCGGGACUGUUAU

1

0 transposon

5286 CACGCGGGAGACCGGGGUUCAAUUC

1

0 ncRNAtRNA

5287 GACACGUUCAACCAGAUGGGCCUGC

1

1 Su(Ste)

Su(Ste)5288 AGUACGAGAGGACCGAGAUGGAUAUAC

1 no match

5289 CAAACCAAUCCCAACCAAACCCGUCAAC

1

1 transposon

LINE

G2

5290 CUCACCUGCACGUCGUGUGACCCU

1

0 transposon

LTR

ninja-Dsim-like5291 UCCGGACAAACACACAAGACCCGA

1

0 transposon

LTR

opus

5292 UGAUCUUCACCGUUGACUUGCCCCG

1

1 Su(Ste)5293 GAAAGAAAUAUAAGAGUUCAUUCUGA

1

0 no annotation

5294 UCUCAUCGUCGUAGAACUAGCCCGUA

1

2 Su(Ste)5295 CCAGACGUAAUACCCCACUACCCGGA

1

1 transposon

LTR

HMS-Beagle

5296 CAAGCUAAACGUGGAUUCCCGCUGGA

1

2 transposon

LINER1-element5297 UCCUGUUGAUCAUUUGCCCGUGGUU

10 transposon

LINE

Cr1a

5298 GAUCAUAUGAAUAGGCUUACGGA

1

1 transposon

LINE

Cr1a

5299 UGACAUAUGAAACAACACCGGAAA

1

0 transposon

LTR

Idefix5300 AUUCGAGAGAGCCUGGAGCCACCUAUA

1

0 transposon

DNA

5301 CCACUCCCAGCUCGGGGAGGUAGUGA

1

0 ncRNA

5302 ACGAGCGCACGUGUUAGGACCCGUAAGA

1 no match

5303 AGAAUCAAGGACAAACCCGCAGUUG

1

0 transposon

LINE

Cr1a

5304 AUUGAAGGAAUCCCAGCACCAGCGUA

1

1 transposon

LTR

flea

5305 CUGUAACUCGGGUCAAUAGGAAUUCUAG

1 no match

5306 AGCUAAUUAACACAAUCCCGGGG

10 ncRNA

5307 GCUAGUUCCAAAAAAUCAUUACCGA

1

2 transposon

LTR

gypsy85308 GAAAGUCGGAGGUUCGAAGACGAUCAGA

1 no match

5309 AAAUCCAUAGCAAGCUUCACACGC

1

2 transposonLow̲complexity

F-element

0 transposon

tRNA

rRNA
LTR

Quasimodo
CG41545-RA¦CG41545

LTR

invader4
rRNA

rRNA

rRNA

CG6230-RA¦CG6230
LTR

opus

trf

rRNA
LINE

Cr1a
Su(Ste)LTR

gypsy62 ncRNArRNA

1 ncRNArRNA

0 transposon

LTR

10 transposon

LTR

10 transposon

DNA

297
3S18
1360

tRNA
LTR

Dm88

Su(Ste)Su(Ste)

1360
rRNA

rRNA

5310 CAACCAGAGAUCUAGAGGGCCUAA

1

1 no annotation

5311 CGGACAAACACACAAGACCCGAUCUA

1

0 transposon

LTR

opus

5312 CGCCUGGGAAUACCGGGUGCUGUAGGCU

1 no match

5313 CCAGCGAAUAAAUUAUUAGGGCCGU

10 transposonLow̲complexity

F-element

5314 UCCGGAGAGGGAGCCUGAGAAACGGC

10 ncRNA

5315 ACAUUCAUAACCGAGCAACUGUUCA

1

1 transposon

LTR

GATE

5316 AACGCCAAGCACCCGAUUCUGAUACC

1

0 transposon

LTR

3S18

5317 ACAUUCAGUAACCGAGCGACUGUUCAAU

1 no match

5318 UCUCAUCGUCGUAGGACAAGCCCGA

1

1 Su(Ste)

Su(Ste)5319 UGGAGAACGACGCCGGUGAGAAUG

1

0 coding gene

CG2986-RA¦oho23B

5320 CACGGGAAACCUCACCCGGCCCGGA

1 no match

5321 CGCGACCGGCUCCGGGACGGCUGGGA

1 no match

5322 UAUCCGAGAUCCCCAGUACAUGUGCU

1

0 transposon

LINE

Doc3

5323 GUUGACUUGAUUCUACCACUGACAA

1

0 transposon

LTR

micropia5324 CCCGAAAUCAGACGAGGUAACGUACC

1

1 transposonLow̲complexity

F-element

5325 CCCAGAAACACAGUGUUUGACGCCU

1

1 coding gene5326 CCGACUACAAAGAUGCCAUACGA

1

0 transposon

Unknown

RR50960

5327 UACUACAGGAAGUUCAUUCGGGACUA

1

0 transposon

LTR

RR504235328 CACUAUUUCACGAUAUACCUUGAGG

1

1 transposon

LINE

Cr1a

5329 CUCCCCGCGGAAAGACGGAAAGACCCC

1 no match

5330 UACUUGUUCCCCGGAUAGUUUAGUAAC

1

1 ncRNA

5331 CAGCGAGCUGGGCCGGCUACGAGAAG

1

0 coding gene5332 CCACAGAGUACGGGGCUUACUGAAG

1

0 transposon

LINEbaggins

5333 UAUUCCGAUAAACGACCAUUACACU

1

0 transposon

LTR

gypsy35334 CAAGACCAGAACCAAUGGACGUGG

1

0 transposon

LINE

HMS-Beagle2

5335 UGCCGAAUCCCGGGGCCGAGGGAGCGAG

1 no match

5336 CAGAAUACAAUUCAAAGCGAACGGUC

1

0 no annotation

5337 GAUGUCCGGACAGCUGGGCCCGAAA

11 Su(Ste)5338 GAUCCUGAAGUCCAUGCCCGAACA

1 no match

5339 AACAGCAUUUGCGAGGCGGGAUGUGAG

1

0 no annotation

5340 CUGGAUGCAAAGUAUCGACGCCGA

1

0 no annotation

5341 ACCGAAUUAACCGCGAGGCUGCAAG

1

1 transposon

LTR

mdg3

5342 CAAGCUAGACUAUGUAUCCCCCGGG

1

2 transposon

LINE

Doc

5343 ACUCGCCGAAUCCCGGGCCGAGGGUA

1 no match

5344 ACCGAAUUAAUCUCGAGGCUGCAA

1

1 transposon

LTR

mdg3

5345 GAGGUAACGAUGGAGUUUGACGGU

1

1 transposon

LTR

flea

5346 CAGUCCAUAGAACUGUCGAACACCAU

1

2 no annotation

5347 UCCGGAGAGGGAGCCUGAGA

1

0 ncRNA

5348 ACGGAAGACCCGCUCCCCGGCGCU

1 no match

5349 UAUGACGAUGGCGUACAGGAGGCU

1 no match

5350 GCGAAAGAUUCAGGAUACCUUCGGGAC

10 ncRNA

5351 UCGGCCCGAACCCUUCUGGUGUU

1

1 transposon

LINEbaggins

5352 UGGAACGAAAUUGGCCUGAUUAGCGGU

1

1 transposon

LTR

GATE

5353 ACCACCCUGAACGCGCCCGAUCUCUC

1 no match

5354 UGGGCUCCGGGGGAAUAUGGUCGCA

1 no match

5355 UCGAGUAGAAUGGUGAACGAGAG

15356 AACUGAAUAACGAAAUGGAUGACA

1 no match

5357 UACUCGAUAGUAUAGUGGUUAGUAUCCC
5358 CAUCUAAUUAGUGACGCGCAUGAAUG
5359 UGGCAGCGAACCGGGACUAGGCCAG

1 no match

5360 UAGACCACACACUUCUUCCAGGACAGUC

1 no match

5361 ACAUUCAUAACCGAGCGACUGUUCAAC

1

1 transposon

LTR

GATE

5362 UCCAAUAUCACCUCGGAGACUGUCGC

1

1 transposon

LINE

Doc4

5363 UUCGCAAAAAUCACGGAACGAUCGAA

1

0 transposon

LINE

Doc2

5364 UCCGAUGAUAUCACUUGGCCAACAUU

1

1 no annotation

5365 UGAUUCAUCGUUAGACGGCUCGGGCG

1

1 AT-chX

AT-chX-B

5366 GCACGCAUCGUGACGAUCUUGAACC

1

0 coding gene

CG2247-RA¦CG2247

5367 UAGUGACGCGCAUGAAUGGAUGAAC

1

1 ncRNA

5368 UCGAGUGUGACCGGGGGGCAUUCUC

1

0 transposon

LINE

G2

5369 UAUCCUGGCUGACAUGAAUCGAUC

1 no match

5370 AUUCGUAUUGCGCCGCUAGAGG

1 no match

5371 AAGAACAACAGUGAAGACGGCGCCCGC

1

0 transposon

LTR

diver25372 UGAGAUACGCUAGCAGACUGGAGA

1

1 transposon

LINE

G2

5373 CUCAACUUGAGGGGAUCCUCAA

1 no match

5374 GCGUGAGAUGAUCAGUGCGUCGGAG

15375 ACCACCCCUGAACGCGCCCCGAUCU

1 no match

5376 GACCGGACUGGCCCGUGGUGAUGCU
5377 AAGCCGUCGAGAGAUAUCGGAAGAGUUrRNACG18743-RA¦Hsp70Ab

rRNA
CG9498-RA¦CG9498

Su(Ste)

rRNA

rRNA

0 repeattrf

1

1 ncRNAtRNA

1

0 ncRNA

rRNA

rRNA

2 coding gene

CG5798-RA¦CG5798

1

0 coding gene

CG2979-RA¦Yp2

1

0 ncRNArRNA

5378 ACAGCAACAAUUGUUAUUUUUCGC

1

1 coding gene

CG6627-RA¦Dnz1

5379 UGGGUGGUGCAUCAUUUGCGAGGACC

1

0 coding gene5380 CUACAACACAUCGAGCGACCGCGUA

1

0 transposon

LINE

Doc3

5381 CUACUUGCCGUGUCAGUGGAUGACGC

1

0 transposon

LTR

ninja-Dsim-like5382 GGCUCUCUCAGUCGCUUCCCGGGUA

1

1 ncRNA

5383 GUGAGGUCUCCGGACGGCUCGGG

1 no match

5384 UCAACCUGAGAGCUUGAUCCUGGCUCA

1 no match

5385 GCAUGCCCGAUGUCCGCGAGAUUGCCGC

1

0 transposon

5386 CACUACAUGAAACCGGACGUGAUGCC

1

0 coding gene5387 UGUCAUCGUCAACUGCAUCCCGUGAUCC

1 no match

5388 AAAUGCCGGAUGCAGAAAUCCCGAAUGA

1

0 transposon

LTR

micropia5389 CGUCACCAUACCCGACACUUACCC

1

0 transposon

LTR

opus

5390 ACCCUCUGAUGAUGUAUUGUUGUCC

1 no match

5391 GGUUGCAACGGGUAACGGGGAAU

15392 CUCAACUGUGAGGGGGAUCCUCAA

1 no match

0 ncRNA

CG17736-RA¦schuy

rRNA

LTR

opus
CG5548-RA¦CG5548

rRNA

5393 AAACCUGAGAUGAUCCUGAGUCGC

1 no match

5394 UCGAGAUGGAGAAGCUUCAGAGUGA

1

0 transposon

LTR

ninja-Dsim-like5395 CAUGGAAUAAAUAUGGACGAGAAAGAA

1

0 transposon

LTR

diver25396 AAAGGAGCAAUUUGGGCCGUCAU

1 no match

5397 GUUGACUUGAUUCUACCACUGACA

1

0 transposon

LTR

micropia5398 UUCGAGAACAAACGUUACUGUUUGGCC

12 transposon

LINE

G2

5399 UACACACUCAUCAACCAAUGGACGUA

1

1 no annotation

5400 ACUUGCCCAACAGCGUGCCGAGCUUGA

1 no match

5401 GUUCGAGCGAACAGUGGUACGAC

15402 UUUGCAAAACGAGAGCGAUACGAGC

1 no match

5403 AAAAAACCUGAAGAUGAUCCUGAGU

12 transposon

5404 UGUGAUUUCUGCCCAGUGCUCU

10 ncRNA

5405 AUCUCAGUCGGAUUAGCCCAUAA

1

0 coding gene

5406 UGACAAUGGUUCCCAAUUUCGAGU

1

0 transposon

LTR

G4

5407 UGCUGGAGUGUUGUGGGGUCGCAGAG

1 no match

5408 GAGAGAUUAAAGACUAAGCCUCAGA

1

0 transposon

LINE

Cr1a

5409 CCAGAGACAUGAUUUCACGAAUUUUU

1

0 no annotation

5410 UAUUACAAUACCCAGAUUUCAGCAAA

1

0 transposon

LTR

gypsy85411 AAAGCACCGUUUCUCGUCCGAUCAA

1 no match

5412 CCCAGACGUAAUACUCCACUACCCGGG

1

2 transposon

LTR

HMS-Beagle

5413 GGAGACGUGGCCGAGUGGCUGAAGGC

1 no match

5414 GCUUCAUCCAAGCGAACUGUGCCCGU

1

1 transposon

LINER1-element5415 UUUGAAGGCCGAAGUGGAGAAGGGUUCC

1 no match

5416 AGGGCGGAGGCCGGCGGCGGGUGGGU

1 no match

5417 AAUCAACCGAGAUUCCCUUAGUAGUGGC

1 no match

5418 UCUCAUCGUCUAGAACAAGCCCGAGG

1 no match

5419 ACCACCCUGAACGCGCCUGUCUGAGCGU

1 no match

5420 UAACUUAAGCGAAAGCAUUUGCCA

10 ncRNA

5421 AAUCUUGAGAAAUGACAAUGGUC

10 transposon

LTR

Dm88

5422 ACCCCUUGAUAAACGGUUGACUUUCG

1

2 transposon

LINE

Rt1b

5423 ACCCUGAACGCGCCGAUCGUCGU

1 no match

5424 UCUUCUACCACAACACGCACACAU

1

0 transposon

DNA5425 UUCAGUAAAAUUCUGUCGAGCGCUGC

1

0 transposon

LTR

invader45426 UACAUCGAGAAUCUCACGCCCACAGGA

1

0 transposon

LINE

Doc3

5427 CGGAGAAGCCGGCGGGAGCCCCGGA

1 no match

5428 AAGAACGAAAGUUAGAGGUUCGAA

1

0 ncRNA

5429 CUGACAAUGAUAGGGCAGUUUACAGC

1

1 no annotation

5430 AACGAGAAACUUCAGUUCAGUCAGA

1

0 coding gene5431 AUACGCAAAGUUAUACCCGUACCCG

1

0 transposon5432 UUCCGGAGAGGGAGCCUGAGAAACGGC

10 ncRNA

5433 CCCCGCGGAAUGACGGAAAGACCCCA

1 no match

5434 GAUGUCGUAUCACCCAGGACGUUCGUACC

1

2 transposon5435 AGCGAGGAGGAGGACUAGCUGGCCGA

1

0 Su(Ste)5436 AAGCAUCGCGAAGGCCCGCGGCGGGU

1 no match

5437 UGCUCGAUCAAAGGCCCUGGCA

1 no match

5438 ACCCCCUGAACGCGCCCGAUCUCGU

1 no match

5439 UCUGCAUGAAGAUGAUUCCGAAGA

1

0 transposon

5440 UGCUCACAAAGGUGGAUCUGGCCGAGG

10 coding gene5441 GAGAGCGUUUACCGAAAUUAUAAUCCC

1

1 transposon

LTR

Idefix5442 AGCCGGACGGUGGCCAUGGAAGUCGGUA

1 no match

5443 ACCCUUGAUAAACGGUUGACUUUCAU

1

1 transposon

LINE

BS

5444 GCAUUCGAGACCCAACGGCACGUGAAA

1

1 transposon

LINE

INE-1

5445 GUGUCCCAAGGCCAACUCAGUGC

10 repeat5446 UGGACGGUACAACGAGUUGCGAAGUCG

1 no match

5447 GAUAACCAAGGACGUUCACACGAGU

1

1 transposon

5448 GAGUCCAAGAGAUUUGCUCCCGAGG

10 coding gene5449 AUAAAUCGGAAGAGACAGCUGGUGGA

1

0 coding gene5450 CUCGCAAGAAAACGAAUCCGAGUAUGC

1

1 transposon

LINE

Doc

5451 UUGAAUGAAAACCCGGCCUCUGUCAG

1

0 transposon

LTR

micropia5452 AAUAACCUUGAGACUGAGGGAGGG

1

1 transposon

LTR

opus

5453 UAGAGGUGAAAUUCUUGGACCGGCGC

1 no match

5454 ACAACUCACCUGCCGAAUGAAC

1

2 ncRNA

5455 UAUCAUCUUUCAAGAUAUUUGUCCCA

1

0 transposon

LINE5456 GGAUCUACAACUGUGAGGGGAUCCUCAA

1 no match

5457 ACCGUUUACACAUUUAUAUUUUUGU

10 transposon

DNA5458 AUGGACAGGCGAGCGGUGCGGCAAAUG

1

0 coding gene5459 AGCACCGUUUCCCGUCCGAUCAA

1 no match

5460 UUCAACCGGACGGGCCUAGAGUUUA

1

2 coding gene5461 CCCCUACAAACAGUACACCUACUA

1

0 transposon5462 UGCCGGGAUCGGAGCCAGUAGCUUCUGC

1

0 coding gene5463 UAAUCCUUUAUAAUCCGAUCGUAUUCC

1

0 transposon5464 UACUUCGGGAUACUGUUCGGC

1 no match

5465 AAGAUCAUCGAGAAGCUGGAGAGCG

1

5466 AGUUUCAUCCAAGCGAACUGUGUCCCGA

1 no match

5467 AAAGAAGCCGUCGAGAGAUAUCGGA
5468 AUCAGGUCGGAGCGUGGCGUGAUUGG

1 ncRNArRNA
LINE

HelenarRNA
CG41521-RA¦CG41521

rRNA

1360

rRNA
CG12717-RA¦CG12717
LTR

springer
rRNA

LINE

Rt1b
Su(Ste)

LINE

Circe
CG8479-RA¦opa1-like

LSU-rRNA̲Dme
LTR

opus
CG31359-RA¦Hsp70Bb
pseudogene

rRNA
Cr1a
1360
CG14507-RC¦CG14507
CG40635-RA¦CG40635
LINE

baggins
CG6303-RA¦Bruce

LTR

ninja-Dsim-like

0 coding gene

CG8171-RA¦dup

1

0 ncRNArRNA

1

2 Su(Ste)

Su(Ste)5469 GGCUUUGAGAGGCGCCGUAGUUAAC

1

1 no annotation

5470 CACAAGACAUAACGGAACAGCUUGGAA

1 no match

5471 AAAAACCUGAAGAUGAUCUUGAGUCGC

1

2 transposon

LINE

Helena5472 GCGAUGAACAGAAAAGAAUCAACCGAUU

12 transposon

Unknown

RR50960

5473 GGAUCCUAACUGUGAGGGGAUCCUCAA

1 no match

5474 AGGAAUUGACGGAAGGGCACCACCGGG

1

1 ncRNA

5475 UAGAGUAUUCAUCUUGCGGCGUGU

1

0 transposon

rRNA
LINE

Cr1a

5476 AAUGCCAAUCACGCCGUUUGAACCC

1

1 transposon

5477 UACAGAUCAACAAAGUACGAUGGGGAC

1

1 no annotation

Simple̲repeat

I5478 AACGGGUAACGGGGAAUCAGGGU

10 ncRNA

5479 CCGCUCAAGAUAGGCAGAUGUGCCCGA

1

0 transposon

LINE

Cr1a

5480 UGUAAUUGUCCGCGAGCUUGCCCAG

1

0 transposon

LTR

3S18

5481 GGAUACCAAGCAGGGACGUUAAUGA

1

1 coding gene5482 ACCUCAGAUCAGACGUGGCGACCCG

1 no match

5483 UAACCUUGAGACUGAGGGAGGGGCA

1

0 transposon

LTR

opus

5484 GGCGAAGGCAAACUACAAGUAAAUCCGA

1

1 transposon

LINE

Circe

5485 CGGUCUGGUGGUUUGAGCGGUGUGCC

1 no match

5486 AUUGUUCCAAACACUUACUUGUCCG

1

0 transposon

LTR

opus

5487 UCCUGGAAUACCGAUGUGUAAAG

1

0 transposon

LINE

G6

5488 UGAUAGCCCCGUAGUGAAAUGACCUG

1 no match

5489 AACAACCGAUAUAAUUCUAACUGAGCACC

1

0 transposon

LTR

G4

5490 UGUUUCAAUCGUUAGACGGCUCGGGC

1 no match

5491 UAGAAUAACAAGAUGCAUACGAUGUGGC

10 transposon

DNA5492 UCUUAUGUAAAUGAAUCGAGAGCGA

1

0 transposon

LINE5493 CAGAUCAACAAAAUACGAUGGGGAACC

1

0 no annotation

5494 ACUCGCCGAAUCCCGGGGCCGAGGGAAA

1 no match

5495 AUGGCUCUCUCAGUCGCUUCCGGGUA

12 ncRNA

5496 ACCGUAGAGGAAACCGUGGUGCGA

1

0 coding gene5497 UGCACAAGUUUAGUCUCUUCCGAUU

12 transposon

LTR

diver25498 CGGAAUGGAAUCGAGCGCUGAGU

10 transposon

LINE

X

5499 AGGGAGUUUGACUGGGGCGGUA

10 ncRNA

5500 UGCAAGAUAAAGACCCUUCUACCUGC

1

0 transposon

5501 CCGAACUUGAGACCGCCCCUGGACAAU

11 Su(Ste)

5502 CCCGAUAGCAGACGAGGUAACGUACC

1

1 transposon

5503 CGGAAGGCCCGGGUUCAAUUCCC

10 ncRNA

5504 AAACUGAAGAUGAUCCUGAGUC

1

1 transposon

5505 CGGUAAAUCACCAAUUUUGACCGC

1

1 repeat

RSP

5506 AUUCCGCUGCCCCCUCACCGUCGAGG

1 no match

5507 ACUGAGCGCAGGGCACGUGGGCAGGGU

10 coding gene

CG31538-RA¦CG31538

5508 AAAAACCUGAGAUGAUCCUGAGUCGC

1 no match

5509 AAUACAUGCCGAGGGCGCUGACCCC

1 no match

5510 CGGCUACCCACCCGACCCGUCUUGAAA

1 no match

5511 GACAAUCGAACGAAGUCAUAGAAC

1

0 transposon

LTR

gypsy85512 CUCUGUUGCACCCGAUGAUGAAAU

1

0 transposon

LTR

accord5513 UCUUGUUCCCCGGAUAGUUUAGUAC

1 no match

5514 AGGACAAUGAUGCGACCCGUCUCU

1

0 transposon

LTR

ninja-Dsim-like5515 GUAUACCUAUACAUUACCGCUAAAG

1

0 ncRNA

5516 AUUGAUUACAUACUGGCUCUUUAUGC

1

0 transposon

LTR

McClintock

5517 CCCAAUGAGAUGGCCUUUGGCGAGAACA

1

1 transposon

LTR

diver25518 GCCCAUAACCCAGAGGUCCGAGG

1

0 ncRNA

5519 ACCGAAACGUUACCUUGCCCUGCUG

1 no match

5520 UUGCCAGGUAGGGAGUUUGACUGGG

10 ncRNA

5521 AGAACUGAAAUGGACUACCUGCAAU

1

0 transposon5522 GGGAGAUAUUAGACCUCGGUUUGG

10 repeat5523 CAGACUAUGACAAAACCUUUGGCCU

1

0 no annotation

5524 UGAGCCAGCUACGAUACAUUAGCCCC

1

1 coding gene5525 CCGAACUUGAGACCGCCCCUGGAGA

1

0 Su(Ste)5526 AAACUCAGGACCUGUUGAACCAAGCG

1

0 transposon

5527 AACACGUGCGCGAGUCGGGGGCU

1 no match

5528 GAAGAAGAGAUGCCCAGUGAGUUUUGCA

1 no match

5529 UACUCCAGGCCCAUCUGGUUGAACGUG

10 Su(Ste)5530 GAUGAUUAUAUCAUUCUCGGGAUU

1

1 transposon5531 CAAAAGGGCAAAUGCUGACUUGAUCUCG

1

0 repeat5532 ACGAGCGCACGUGUUAGGACCCGAAAA

1 no match

5533 ACCGGAGAUGAACGCCAACAGCAGA

15534 AAACCUGAGAGUUUGAUCCUGGCUC

1 no match

5535 UACAGGCGAAAUGAAAAUCCGUUUGU
5536 CGCCGAACGCUUCUCAGUGUGCCAGC

rRNA

pseudogene

1360
Cr1a

rRNA
CG17291-RA¦Pp2A-29B

rRNA
LINE

HelenaSu(Ste)Low̲complexity

F-element
tRNA

LINE

Helena

rRNA

tRNA
rRNA
LINE

Doc2
LSU-rRNA̲Dme
CG7184-RA¦Mkrn1
Su(Ste)LINE

X

Su(Ste)LTR

gypsy8
LSU-rRNA̲Dme

0 transposon

LTR

McClintock

1

1 transposon

LTR

micropia

1

0 no annotation

5537 GCGACAACGAGGUGACUCAGCAAU

1

1 no annotation

5538 GCACACAGAGGAAACAGAUGAGAGCA

1 no match

5539 CGCAUCUACAACAGGCCCGGAGCGUA

1

0 transposon

LTR

invader2

5540 UGAAUCCCAGCACCAGACCAAGUU

10 coding gene5541 CAAUAAUCCACGGCUGACUCCGGU

1

0 transposon5542 GUGCCAGGCCCGUAUAACGUUAAUGA

1

0 ncRNA

5543 CAAGAAAUACAAAACGAGCUUAAAGA

1

0 transposon5544 UGCGAGGAGAUUUUGGAUCGUGUCCCA

1

0 repeat5545 AGACCCCAGAAAAGGUGUUGGUUGAUA

1 no match

5546 CACAGAGUAGGGGGCUUACUAAAGUCAG

1

2 transposon

5547 UUGAGAUAGUCGGGCUUGAUUGGGAAA

10 ncRNA

5548 GUGUACUAUAACCAAUUGUCAUUA

1

0 no annotation

5549 UAGAGGCAAUCACCGAGAGCAUCAA

1

0 transposon

5550 UGAAGCCGGUGAUCGAUAGUUCCUC

1

0 repeattrf

5551 ACGCGGAAAGAGACGCAAUUUUGGCC

1 no match

5552 GACAUCGAGGAGCCACCGACGCCGACG

10 coding gene

CG8978-RA¦Sop2

5553 AAAUCGCCCAAGCCAAAGAAUAUC

1

0 repeat5554 AAACCUGAAGAUGAUCCUGAGUCU

1

1 transposon

LINE

Helena5555 AAGAGUGACGGCCGGGGGCAUUCG

1 no match

5556 AUGCCCGAUGUCCGCGAGAUUGCC

10 transposon

LTR

opus

5557 ACGCGCGCUACACUUACUGGCUCAGC

1 no match

5558 CGUCCCCGUCCGCCCCCCGUUCCCC

1 no match

CG13449-RA¦CG13449
LTR

GATE
rRNA

LINE

RR49783
trf

LINE

baggins
rRNA

LINE

F

trf

5559 UCCUAAACUACGGGAGAUAUUUGG

10 transposonDNA

hopper5560 UACUCGAAGACACCACGGUGAAAGUGGG

10 transposon

LTR

ninja-Dsim-like5561 GGCAUUAGUAUUACGACGCGAGA

1

0 ncRNArRNA

5562 UGUUUCAUCGUUAGACGGCUCGGACG

1

1 AT-chX

AT-chX-B

5563 GGACGAGGCGCCGCCGCCCCCCCCUAC

1 no match

5564 AUCUUAUGGUAUUGGGUUUUGAUG

1

0 repeat5565 UCCCGUUGGUAAAUGAAGUCGAGUGC

1

0 transposon

LTR

micropia

5566 AGCAAGCCGGGCGCUCCCGUGUUC

1 no match

5567 UAUUAUUAAGAUGGGCUUGUAGGUGUAC

1

0 transposon

LINEbaggins

5568 UAGGAAUUCAACGAGGUAUGGC

10 repeat5569 GCUUACAAUAUUAAAAAGUAUGAGA

1

0 transposon

LTR

diver25570 GGCAACAUCCAGACCAAACGAGUCCA

1

0 transposon

LINE

Rt1b

5571 UGCACUAAUAUAAGCCCUAACGUCCG

1

1 transposon

LTR

G4

5572 CGGAGAGUGUUGCCAGUACUGGA

1

0 transposon

LINE

G2

5573 UUGGUUGAACUCUAGAUAACAUGCA

10 ncRNA

5574 UGCUUGGACUACAUAUGGUUGAGGGUUG

10 ncRNA

5575 CACUCAGUCGCUUCAUCUUACAGACCAA

1

1 transposonLow̲complexity

F-element

5576 CAAAGAAGAACACCGAUAACAUACGA

1

0 transposon

LINE

INE-1

5577 AGAACGAAAGUUAGGGGAUCGAAGAU

1 no match

5578 AAGGCAAUGAUUGUUGAGUGCUUC

1

0 transposon

DNA5579 CUGGACCCGUUCAAUCGCGCCCCGU

1 no match

5580 AAGACAAGUAUACCGUGGCACACCAU

1

0 transposon

LTR

micropia5581 UAUUAUCCCAGCACUACGAAGCGCCCU

1

0 no annotation

5582 UGGACAAAAAGACAAAUGACACGGU

1

1 transposon

LTR

gypsy

5583 GAAGACCCUGUUGAGCUUGACUCUA

1

1 repeat5584 GCAUUCGAGGCCCAACGGCACGUGAA

1

1 transposon

LINE

Rt1b

5585 GCCUGAGAGACGGCACCUACUUCUAA

1 no match

5586 GCUCACCAAGGCGACGAUCAGUAGCUGG

1 no match

5587 GUCCGCCCGAACGCUUCGUCCCCUC

1 no match

5588 GGAUCUCAACUGUGAGGGAUCCUCAA

1 no match

5589 ACCCUUAACGCGCCCGAUCUCGUC

1 no match

5590 AAUAGAAAGUAAGCCCCAUGUAAUCGAA

1

1 transposon

LTR

micropia5591 CUGAGUUCGAUCGUGUGGCCCUGUACAC

1

0 coding gene5592 AACCGACGAGAGCAUAAUGGAGGAGA

1

0 coding gene5593 UCCGAAUCAAAUGCUACGUAACCAAGC

1

0 transposon

LTR

diver25594 CACAGAGUACGGGGCUUACUAUUU

1 no match

5595 CCAACUCAAAUUGGCACCGAGCGAAA

1

0 transposon

LTR

Stalker25596 GGAUCCUCAACUGUGAGGCUCAA

1 no match

5597 ACGGGAAACUUACCAGGUCCGAA

1 no match

5598 GCAUAUCGAGAGGUCCCCGGUUCAUACC

1

2 ncRNA

5599 AACGUGUCUCUCGAAACUGUUUGA

1

0 transposon

LINE

Doc2

5600 UGAAUUGUUAGACGGAGACAUGUAU

11 transposon

LTR

micropia

5601 CUGCCCAAAAUACAGAUUCCCACU

1

1 transposon

LTR

roo

5602 CGCUUCGCUUGUGAGAAGUCCCGGGU

11 ncRNA

5603 UGCGAGAACAGCGGUUUGCCCUGU

1

0 transposon

LTR

5604 CCCGAAAAUCGUCUUCUACCACAACACG

1

0 transposon

DNA5605 UGCUCUCGAAUGUAUGCCCGACA

1

1 transposon

LINE5606 UCACACGGGUAGUACAACUUACAA

1

1 ncRNA

5607 UAGAGAGUGAUGCCGGGUAUAAAG

1

1 no annotation

5608 CCGUUCGUUGACGUUGAUGGCUG

10 transposon

LTR

HMS-Beagle

5609 AUGCAAUAGAAACGCGCGAGUCGAGUUGCCC

1 no match

5610 CCCGUACUCUGUGGUGACCAACACA

1

0 transposon

LINEbaggins

5611 UUGGGUUAAGUCCCGUAACGAGCGCA

1 no match

5612 AUCCUCAACUGUGAGGGGACCUCAA

1 no match

5613 GAGCGCACGUGUUAGGACCCUAAAG

1 no match

5614 UGUUUUCAUCGUUAGACGGCUCGGGGCG

1 no match

5615 CCGAACUUGAGACCCCAGCCGCG

1

1 repeat5616 ACCGCGAAAACCCGGGUAGCACCA

1

0 transposon

5617 GAGAAGGAGUCGACCGAGGAGAAC

1

0 coding gene

CG4609-RA¦fax

5618 UCCGAGGCCCUGUAAUUGGAAUGAG

1

0 ncRNArRNA

5619 UGUUUCAUCGUUAGGCGGCUCGGGCG

1

1 AT-chX

5620 ACCCGCUUGACCUUACUCAACAUA

1

0 transposon

LINE

G2

5621 UUUGCAAAAACGAGAGCGAUAGAGCUGU

1

0 transposon

LTR

micropia5622 UCCGAUUUCAAGUACAAGGCGAACAGA

1

0 repeat5623 CUGUAACUCGGGUCAAUGGGAAUUCUAG

1 no match

5624 GGUAACGGGGAAUCAGGGUUCGA

1

0 ncRNA

5625 GCAUCUUCCAAAGAACAAUUGACGAUA

1

0 transposon

LTR

blood

5626 ACCGAAAUUACAAAGCUACCGAAUG

1

0 transposonDNAtransib4

5627 AAAGGAAUUGACGUAAGGGCACCACC

1

1 ncRNA

5628 GGGAAUACCGGGUGCUGUAGGC

1 no match

5629 AUAAUCGUUAAAUGUCCAUUCCUGGGA

1

0 no annotation

5630 ACACACGAGAACGGAUUGUUGA

1

0 transposon

LTR

springer

5631 GUCCGGCGGCGAGAGGGAGAGAACCCAG

1 no match

5632 AACACCAAAACACAAGUUCGAAUUA

1

0 transposon

LTR

blood

5633 UCGAGAAGCGAACCCGGCGAACUGAAAC

1 no match

5634 CCAGAUAGGACGCCGAUUUUCCGC

15635 AAGAGCAAUGGAUGAAUUUUAAGAGA

1 no match

5636 AUGGUUGCAACGGUAACGGGGAAUC

1 no match

5637 GUUCGUUUCCCCGGCCGACGCACCA

1 no match

5638 GAUGCGGGAUGAACCGAACGUAGAGUU

1 no match

5639 UAAAUACCUUGGGAACAAUUGAUA

1

0 transposon

LTR

micropia5640 AUCGCUUGAAACAAGCACAAUUACUCGA

1

0 transposon

LTR

diver25641 GCAGUCGUGGCCGAGCGGUUAAA

1

1 ncRNA

LSU-rRNA̲Dme

SAR̲DM

rRNA
rRNA

1360

LSU-rRNA̲Dme

CG7910-RA¦CG7910
CG3002-RB¦Gga

tRNA

tRNA
diver21360
R1-element
rRNA

trf
LTR

GATE

AT-chX-B

RSP
rRNA

rRNA

0 no annotationtRNA5642 AAAACCUGAAGAUGAUUCUGAGUCGC

1

1 transposon5643 UUGAUACGAAUGAGACCCGCAGUAAA

10 repeat5644 GGGCUCAAACUGUGAGGGGAGUCGUCAA

1 no match

5645 AACCGCGAAUUCCCCUACAAUGGCGA

1

0 transposon5646 UGGGAUUGGCCUUAUCCCAGGAUCGAAA

1

0 coding gene5647 AAAUACCAUAGCAAGCUUCACACGCA

1

0 transposonLow̲complexity

F-element

5648 AGACCAAUAAAUUACUUCUCUCGAAA

1

1 transposon

LTR

Idefix5649 CGACGCCGUCUCUACCAGGAAUCAA

1

0 transposon

LTR

diver25650 CUGCAAUUACAUCCACGUACGGCGAC

1

2 transposon

LTR

Quasimodo

5651 UCUGACUCUCAACCUUUUUUUGGU

1

0 no annotation

5652 ACAGAACUGGCGCUGUGGGAUGAA

1

1 ncRNA

5653 AGGAGGGCGAUUACCACGGCAGGGUU

1 no match

5654 CGUGACCUGAUUCAUCGCAGUUCCAGUC

15655 ACUCGCCGGAUCCCGGGGCCGAGGGA

1 no match

5656 GAAUCUAUGGGUGGUGGUGCAUGGCC

15657 AACGAUGGAUACUAGGCGUUGACCG

1 no match

5658 ACCCUGAACGCGCCCGAUCUCGC

1 no match

5659 CUGUUAAACAAUGUACCUGUGAUCAA

1

1 transposon

LINE

Cr1a

5660 AUCGAAUUAAUCGCGAGGCUGCAAGA

1

1 transposon

LTR

mdg3

5661 GCAACCGAUAACGCCCACCGAGGUCCA

1

1 transposon

LTR

ninja-Dsim-like5662 CCGCGUUGAUGAGUUGAAUCGUUCU

1

0 ncRNA

5663 GAAACGGGAAACUUCAUCCCAGUCGG

1

1 no annotation

5664 AACUAUCACAACGGAACUCUGACCC

1

0 transposon

LTR

Dm88

5665 AUGCCCCUGAUGAAGAAGAGAUGCCC

10 transposon

LTR

ninja-Dsim-like

5666 ACACCUGAACGCGCCGAUCUCGUUC

1 no match

5667 GUGAUGUCAACGUUUGAUCCCCUGGGU

1

1 transposon

LTR

ninja-Dsim-like5668 GGUUGUAAAGCUCUUUUGUCCGGGACGA

1 no match

5669 UGCUUGCACUACAUAUGGUUGAGGGU

15670 AAAGGAGUCUAACACGUGCGCGAG

1 no match

5671 ACUGGACGAGGCUGGACUGAUCCCUGA

1

0 transposon

5672 CUGUUGAUAAGGUAACCAGCGA

1

0 coding gene5673 AAGAGGGGCGGCCGGGGGCAUUCGU

1 no match

5674 AAGAACCUGAAACCGUGUGCUUAC

1 no match

5675 AAGAGAGCAAUUUUGGCCGUCA

1

0 transposon

LINE

Cr1a

5676 CAGAUGUCCCAAGAGAAGUUGGCCC

10 transposon

LTR

flea

5677 GCAGAUAAAAAACAAGCGGUUGAG

1

0 transposon

LTR

flea

5678 UUCUUCGGGACUAUCCAGAUAGGG

1

0 transposon

LTR

opus

5679 ACAACAUCAAGAAAACCGACGACAC

1

2 transposon

LTR

INE-1

5680 AAAACCUGAAGAUGAUCCUGAGUU

1

1 transposon

LINE

Helena5681 UGGGUUCCGGGGGGAGUAUCGUUGC

1 no match

5682 AAAAAAGGCUAAAUACCGGCACGAGACCG

1 no match

5683 GUCCCUGCCCUUUGUACACACCG

15684 UCGUCAAAAGAAGAACGGAACCGUACC

1 no match

5685 CAGAUCUUUCAAAUGUCUGCCCUAUCA
5686 UGCUUAAAACAGCAGGACGGUGA

1 transposon

LINE

Helenatrf

LTR

gypsy6
CG33495-RA¦Dup99B

rRNA
LINE

0 ncRNA

Circe
rRNA

snoRNA

1 ncRNA

rRNA
LINE

G2
CG4141-RA¦Pi3K92E

0 ncRNArRNA

1

0 ncRNArRNA

1

0 ncRNA

5687 ACAUAACGGAACCGCUAGCAGAUCU

1

1 transposon

5688 UUCAAGGUUACCCGAGGAUGCUGU

1

1 repeattrf

5689 AUGUGCCCAAGGCGAACCCCCGAUCGCA

1

0 coding gene

CG9450-RA¦tud

5690 GCGCGCGAAGGUUGGCUCAGGACGGUU

1 no match

5691 CCAGACGUAAUACUCCGCUACCCGGAC

1

1 transposon

5692 ACGAGUGUUAUUGUGGGCCGGU

10 ncRNA

5693 UCUAUCCAUGGCCAGGAUGAAGGUGCCGU

1 no match

5694 CUGUAACUCGGGUCAAUUGGGGUCAAU

1 no match

5695 AGCAGGCGAUGCUUGGACCAGUUA

1

0 no annotation

5696 UGCUAGAAGACGAUUUUCGGGCC

10 transposon

LINE

Cr1a

5697 CUGAAGAUAAGUGGAGUUGGAAAGCC

1

0 transposon

LTR

ninja-Dsim-like5698 UAGUUUGACAUUGUGAAGAGACAU

1 no match

5699 UCCGAACAUAUCAAGACAAGACCGG

10 transposon

DNA

Tc1-2

5700 AUAGGGCGAUCAGUCGCUGGGUGUA

1 no match

5701 AUUGCCAGGUAGGGAGUUUGACU

10 ncRNA

5702 GAUAACCAAGGACGUUCACACGAGG

1

0 transposon5703 GAUGUCCGGACAGCUGGGCCCGAAC

1

0 Su(Ste)

Su(Ste)5704 UUCAAGGUUAUCCCAGGAUGCUGU

1

1 repeattrf

5705 UAUGGCUCUCUCAGUCGCUUCCCGGA

1

0 ncRNA

rRNA

5706 ACUCGCCGAAUCUCGGGGCCGAGGGAGC

1 no match

5707 GCUGUACUUAUGCAAAAGAAGGACGAC

1

1 transposon

5708 UGGAGAACCUGGAGAUGGAGGCCGACA

1

0 coding gene

CG42321-RH¦CG42321

5709 GGUUUGAAGCGAACCCGGGGAACUGAAA

1 no match

5710 GCUCGGGGAGGUAGUGACGAAAA

10 ncRNArRNA

5711 GGAUCCUCAACUGUGAAGGGGAUCCUCAA

1 no match

5712 CUGGCUCAGAACGAACGCUUGCGGCGCGC

1 no match

5713 AAAAUUACAAAGACGACGGCCCUACC

1 no match

5714 GAGAUUCCCACUGUCCCUACCUACUA

12 ncRNA

rRNA

5715 GGACCUCAACUGUGAGGGGAUCCUCUAA

1 no match

5716 AGCACCGAGAGAUUCGCCUACGCCGGC

1

0 coding gene5717 GACGACGAAAUCUAAAGACACAGUG

1

0 transposon

LINE

G2

5718 CCAAGGCGCUUGAGAGAACUCGGGUGAA

1 no match

5719 AUGCAAGGUUACCCCAGGUGCUGUGC

1 no match

5720 ACAGUUCAGUAACCGAGCGACUGUUCAAU

1 no match

5721 AAGACCCCCGAAACCAGACGAGCUACC

1 no match

5722 GCUCUCGAAUGUAUGCCCGAUAUAA

1

1 transposon

LINER1-element5723 AUCUCAUCGUCGUAGAACAAGCCCCGA

1 no match

5724 CCCCGCGGAAAGACGGAAAGACCC

1 no match

rRNA
LTR

LTR

opus

HMS-Beagle
rRNA

rRNA
LTR

Unknownopus

RR50960

CG17210-RA¦scpr-B

5725 GAAGCAAAAUUCACCAAGCGUUG

10 ncRNA

5726 AAGUCCGAGAGAGGCUUCCGAGUC

1

0 transposon

LINE

rRNA
TART

5727 UGCUCUCGAAUGUAUGCCCGUAUAUACG

1 no match

5728 UCGGCCCCGAAACCCUUCUGGUGUGUU

1 no match

5729 CAGGCAAAAAGGACAACAUUCACCCAU

1

1 transposon

LTR

HMS-Beagle

5730 GGUCCGAACAUAAGUGUGUAAGA

1

0 ncRNArRNA

5731 UGGAGUGAUUUGUCUGGUUAAUU

10 ncRNA

rRNA

5732 GGGGAUGUAGCUCAGAUGGUAGA

1

0 ncRNAtRNA

5733 CACAGACUCGGAACGCCUCAUUGG

1

0 coding gene5734 CAAGCUAGACUAUGUAUCCCCGGGUAAU

1

1 transposon

LINE

Doc

5735 AAAACCUGAAGAUGAUCCUGAUUCGC

1

1 transposon

LINE

Helena5736 AAGUACAGUAUCCUGGGAUAUGGAAGU

1 no match

5737 CGGCACGAGGCCAUCCACGGACCCAG

1

0 coding gene5738 AUGCUCGAGAUGACAACCUUGGACCUGA

1

0 transposon

LTR

micropia5739 GGGGAACUGAGGAACGCAUUUCAAA

1

0 transposon

LTR

invader3

5740 ACCUUCGUCCAAGAGAACUGUGCCCG

1

2 transposon

LINER1-element5741 GUCUGAGAUGGAGGCCCUUGACAAA

1

0 coding gene5742 GAUGGUUGGCAGGGAUAACAUCGU

1

0 transposon5743 GUGCAACGACGAGAUGACCAACUUGA

1

1 coding gene5744 UGAAGCCGGUGAUCGAUAGUUCCUCU

10 repeat5745 GACAUCUUAAAGGGCGAAAAUGGA

1

0 transposon

LTR

springer

5746 GAACAGGUCAACCGAAUCACGUCAG

1

0 transposon

LINE

Doc

5747 ACUCGCCGAAUCCCGGGGCCGGGGA

1 no match

5748 GGGGAAAGAUAAUCAUGUUGCAGACGC

1

0 transposon

LTR

mdg1

5749 UGUUUCAUCGUUGACGGCUCGGGC

1 no match

5750 UCCUGACGAAGAGCGCAAGAAGAGGG

10 transposon

LTR

opus

5751 CGCGUGAGACCGUACCCGAAACCGAC

1 no match

5752 CAAGCAUUCGACCGAGUCUGGCUCGU

1

1 transposon

LINE

F

5753 ACCCUGAACGCGCCCGAUCUCUU

1 no match

5754 CUUCAACUGUGAGGGGAUCCUCAA

1 no match

5755 AGGAUACUAAGCAGGGACGUUGAUGA

15756 UGCCGAACAUCCUAUCUUGACGAU

1 no match

5757 AAACCUCAGAACGUCUUGAUUCG

15758 UUUGGUUGCAAAGCUUAGGCUGGGUUA

1 no match

5759 AUAUCCGAGGCCCUGUAAUUGGAAUG

10 ncRNA

5760 CCCGUUAGGAAUAAGUAUAUCAUUGC

1

0 transposon5761 AACCAUGAGACCGAUAGUAAACAAGUAC

1

0 ncRNA

5762 AGAACGCACCCGCUUGACCUUACUC

1

0 transposon5763 GAGGACUUGGGCGAUUUAAGUGG

1

0 Su(Ste)

Su(Ste)5764 UGUUCUUCUAGGGAUGGCGUGAA

1

1 Su(Ste)

Su(Ste)5765 UCUCCCCGCGGAAAGACGGAAAGACCCCCUA

1 no match

5766 UGCUCGGACUACAUAUGGUUGAGGGUUGUA

1

1 ncRNA

5767 AUAAGGGUUGCACACCGUCCGGUAU

10 transposon

5768 CUCAGCGAUGUGUGGGGCAAGACA

1

1 Su(Ste)5769 ACCCAUGUGAAAUACUUCACAUCGA

1

0 transposon

LTR

opus

5770 UGCGGCUGGAUCACCUCCUUUCU

1 no match

5771 CGAAGCUAAAACGCUGGAAGGCUCGUA

1

0 transposon

LTR

opus

5772 CCAGCUCGGGGAGGUUGACGAA

1 no match

5773 GCUAACAAAGACUCGCAGCGGCCACG

1

0 transposon

LTR

gypsy65774 GACUGCAGAUCGAGAGGUCCCCGGUA

1

1 ncRNAtRNA

5775 CUGUGAGGAGGAUCCUCAA

1

2 coding gene

CG8325-RA¦l(2)k14710

5776 GCUGCAGAUCGAGAGGUCCCCGGUUU

12 ncRNAtRNA

5777 ACGAGCGCACGUGUUAGGACCCGAAAGUA

1 no match

5778 CAAGCUAGACUAUGUAUCCCCGUUAA

1

2 transposon

LINE

Doc

5779 UUUAGUUCAAACGAAAGACCGGUGCCC

10 transposon

LTR

HMS-Beagle

5780 CUGAGAAUUACGAUCUUUUAUUAGGA

1

0 transposon

LTR

McClintock

5781 AAUUGGAAUGAGUACACUUUAAA

1

0 ncRNA

5782 UGAAGGCCGAAGUGGAGAAGGGUUCC

1 no match

5783 GAAUACUUUAUAUAAUUACCGCAUU

1

0 transposon

5784 CACCAGCAGAACGCGCAGAGCGGAG

1

0 coding gene5785 GAGGAAUUUGAGCUGCGUUGACGCCGA

1

0 transposon

LTR

ninja-Dsim-like

5786 CAUACCUUGACUGGCAGUCCCGG

1

0 transposon

LINE

F

5787 CCGAACUUGAGACCGUCCCUGGAA

1

2 Su(Ste)

Su(Ste)5788 AAUCGAUGACGAAUCGUGAGGACGAGC

10 coding gene

CG32697-RA¦l(1)G0232

5789 UAGCGGACAACCUAGCCAGUGCAU

1 no match

5790 ACGUCCCUGCCCUUUGUACACACCGCCC

10 ncRNA

5791 ACAACAAACAACACAUACCCGCUGGCCG

1

1 transposon

LTR

GATE

5792 UUGUCAAGAAUAGUGUGUUAGAGGGA

1

0 transposon

LTR

invader45793 CUGGUGGAAAUGCCAAUGCAGCAGAGC

10 coding gene5794 AGAGCUAAACUCGAACACGAUUUCGGU

1

1 transposon5795 GCUGGCAGGACGAGGACGAGAAGGC

10 coding gene5796 AACGAGUCAUGUUAAGGCAGUUACCUUA

1

0 no annotation

5797 UCGAUAUUAUCCCAGCACUACGAAG

1

0 no annotation

5798 UUCGUGGAGUGAUUUGUCUGGUU

10 ncRNA

5799 UCAAGUCAACGAUCGUGGCAGGACGCA

1

0 transposon

LTR

micropia

5800 CAACCUAAUCACGUUCGGUGCCCGUAA

1

2 transposon

LINE

Rt1a

5801 CUGGGAAACGGGGCGCGGCCGGAAAGG

1 no match

5802 CCCGAAAGCUACGAGGUAACGUA

1 no match

5803 CCCAACAAGACAUCCGAUUAGUUCAUU

1

0 transposon

LINE

Circe

5804 AAGGAAACCACUGUGGAGGGAACCAGC

1

0 coding gene

CG32473-RA¦CG32473

5805 AUGCCUGAACGCUCUAAGGUCGU

1 no match

5806 GAACGACCAUAAAGAAGCCGUCGAGA

1

0 ncRNArRNA

5807 GGAUCAACUGUGAGGGAAUCCUCAA

1 no match

CG31359-RA¦Hsp70Bb

CG13484-RA¦CG13484

CG5968-RA¦CG5968
LINE

CG33233-RC¦CG33233
trf

1 coding gene
2 transposon

G2

CG12717-RA¦CG12717
LINE

RR49783
rRNA

LTR

flea
rRNA

LINE

G2

rRNA
LTR

gypsy12
Su(Ste)

rRNA
LTR

flea
pseudogenerRNA

CG10373-RA¦CG10373
LTR

micropia
CG8004-RA¦CG8004

rRNA

5808 GCGGGGCGCGGGACAUGUGGCGUACGG

1 no match

5809 AGUGCGGUAACGCGAUCGAUCCCGGAG

1 no match

5810 CAUGAUAAAUAGGGGCAAUUUGC

1 no match

5811 UGGGGAAGCUCCGUUUCAAAGGCCUGAU

1 no match

5812 AGCUCGAGGAAUACGGCCUUACU

1

0 transposon

LTR

ninja-Dsim-like

5813 CUAGAAAAAACGAGGUUCACCCAA

1

0 transposonLow̲complexity

F-element

5814 GCCUGAUGACCAUGCGAGUUGG

1

2 no annotation

5815 GCUGACUUGAUCUCGGUGUUCAGUAC

1

0 repeat5816 GUUGCAUCCGGUGCGUCCUUAACAGUCC

1 no match

5817 UUUGAUAAUAACCCCAGGAAUUAAAAA

15818 UUCGAUACUGUUUGGCUUGAGUUUG

1 no match

5819 GUCGAAGCCCCGGUUGAUGCUCAAGU

1

0 coding gene

5820 AGCUGGUUCCUGCCGAAGUUUCCCUC

1

1 ncRNA

5821 GAGCUCGUUUGAUUUUGACCAGGAU

1

0 transposon

5822 CGGUACCGUCCGUCGCCAGGCCGUCG

10 coding gene5823 UACAUUAUUAUUGUGUAUCGACGGGA

1

1 no annotation

5824 GCAACCCCAGAUGUCCGUGAUCCAGU

1

1 transposon

LTR

ninja-Dsim-like5825 ACGAGUAAUAUGAGCACCCAGAGU

1

1 transposon

LTR

opus

5826 GGAGACAAGAUGCCAGAUGUACCAA

1

0 no annotation

5827 AAACCUGAAGUAUGAUCCUGAGUCGC

1 no match

5828 AACAGGGAACGUGAGCUGGGUUU

1 no match

5829 AACCGACUACAAAGAUGCCAUACGA

1

0 transposon

Unknown

RR50960

5830 GAUCGAGGCGCUCAACCCAAGCUC

10 coding gene5831 ACCCUUGAUAAACGUAUGACCUUCGU

12 transposon

LINE

BS

5832 UAAUAAUCCACGGCUGACUCCAGU

1

0 transposon

LTR

GATE

5833 UCGAGCUCUCGAGAAAGGGACGCGAC

1

0 coding gene5834 AGGCCCAGUGUUCGGUCCACUGCU

1 no match

5835 CUAGCAAGAACUCGGAGGAGCAUUUAG

1

0 transposon

LTR

flea

5836 GAUGUCGUAUCACCCAGGACGCCCGU

1

1 transposon

LINE

Rt1b

5837 CCAUCAGGUCGGAGCGUGGAAGAACACCC

1 no match

5838 UAAGGAUGAUGAUACCGACUAAAGGCA

15839 CUCGCAAUCCCGGGCCGAGGGAGU

1 no match

5840 CUCAAACUGUGAGGGGGAUCCCUCAA

1 no match

5841 GUGUGAUUCCCGUGUAGACGUCGCUUG

15842 GCUAAACCAUUCGUAGACGACCUGC

1 no match

5843 UCGGGAUAAGGAUUGGCUCUGAAGA

1

0 ncRNA

5844 CGACCACGUUGUAAUGCCACCGAGA

1

1 transposon

LTR

ninja-Dsim-like5845 AACGGAUAAAAGGUACUCCGGGGAUAAC

1 no match

5846 AAAGGCAUGCCCGAUGUCCGCGAGA

1

0 transposon

LTR

opus

5847 CAAACCAAUCCCAACCAAACCCGC

1

1 transposon

LINE

G2

5848 UGCAACGUUCACCAAUCUUCGUCAGC

1

0 transposon

LTR

3S18

5849 AAAGAGAGCAAUUUUGGCCGUCG

1

0 transposon

DNA5850 ACAGCUUGUUCACUGCCCGCCUUAUU

10 transposon

LTR

diver25851 AGAAAGCCGAACUCGACGCGGUUGUC

1

0 no annotation

5852 UUAACAACGAUGAUGAUUCUGGCCCAU

1

1 transposon

LTR

Max

5853 AGUGGAGCCGUACCUGUUGGUUUGUCCC

1

0 ncRNA

5854 GCCGAACGUAGUCUCGAGAGCGA

1 no match

5855 ACGAGUAAUAUGAGCGCCCAGAGUGU

15856 GGAGAGGUUCCCGAGCGGCCAAAGGGAUCAGA

1 no match

5857 AAGCAAUUAUCCGAUACCGCUUAUC
5858 GAAGACCAAGGCCAAGCACUUCUCGCCC
5859 UCCGAGGAAUCUGGGUUCAAUAUUU

1 no match

5860 UCUGAUGAUGUGUUGUUGCCAUGGU

1 no match

5861 AGGUCAAAACUCCCGUGCUGAUC

1 no match

5862 GUAACAACGAAGAUGAUUCUGGCCCAGA

1

0 transposon

LTR

invader45863 GAGAAACUGACAAAGGCCCUUGAUGU

1

1 transposon

LTR

Stalker

5864 AUAUGCUAAAAGUUAUCCUUACCCAGUC

1

1 transposon

LTR

opus

5865 UGCGAAAGUAAAAGAUGUCCAGCGAA

1

1 transposon

LINE

Rt1b

5866 UAUGUGAGAACUCGAACUUGCCUA

1

0 transposonDNAtransib2

5867 CUAGCCUUGCCCACUUCCCGCUAACA

1

0 transposon

LINE

X

5868 UGCUCUCGAAUGUAUGCCCGUAUAU

1 no match

5869 UCGAGAUGGAGAGGCUUCAGAGUG

1

0 transposon

LTR

ninja-Dsim-like

5870 CAAAGUAUCACGAGUUUGUUAUAU

1

0 ncRNA

5871 GCCGAAUGACCAAGGGUUCCUGGGC

1 no match

5872 CGAGACUUUGAACUAAAACAGUUACC

1 no match

5873 CGACCUCAGAUCAGACGUGGCGACCCGC

1 no match

5874 UGAGGCGCUCGGUGUCGGUGA

1 no match

5875 UCCGGACAAACACACAAGACCCGAUCU

15876 AAACCAUUCGUAGACGGCCUGCU

1 no match

5877 CACAGAGUACGGGGCUUACUGAG
5878 ACAGAGAGAAGACUCACCCGACGA

1 transposon

LSU-rRNA̲Dme
LTR

opus
CG1099-RA¦Dap160
rRNA

LINE

X
CG8922-RA¦RpS5a

CG32344-RA¦CG32344

CG6527-RA¦CG6527

0 no annotation

1 coding gene

CG16741-RA¦CG16741
rRNA

1360

rRNA

1 transposon

LTR

opus

1

2 transposon

LTR

flea

1

0 coding gene

CG1193-RA¦CG1193

rRNA

0 transposon

LTR

opus

1

1 transposon

LINEbaggins1

0 no annotation

5879 CAAGGUGUUGUAAGUGGUUGAGC

10 ncRNA

5880 ACCCUGAACGCGCCCGAUCCCGU

1 no match

5881 AUAACCUUGAGACUGAGGGAGGGGCAA

1

0 transposon

5882 GUGCCAGGCCCGUAUAACGUUAAUGAU

1

0 ncRNArRNA

5883 ACGGGCUGCCCGAGCGUCACCUGCAC

1 no match

5884 AGCAGACCAAUCCCAACCAAACGAUACUGUUCGG

1 no match

5885 AAACCGAGAGGAGGAGGAACGUCGCGU

12 coding gene

CG13168-RB¦CG13168

5886 GGCUCCUCAACUGUGAGGGGAUCCUCAA

1 no match

5887 AAUUCCGUAAACGAAGCCCAAAGUUA

1

1 transposon

5888 UGAUUCCGAGGAACCAAUUGAUCUAG

1

1 Su(Ste)

Su(Ste)5889 UGGCUCUGAAGAUUGAGAUAGUCGGG

10 ncRNArRNA

5890 CUCGUCAGAAAACGUUACGCCGA

1

1 repeat

trf

rRNA
LTR

LTR

opus

Rt1c

5891 UCUCAUCGUCGUAGAACAAGCCCGAUGA

1

1 Su(Ste)

Su(Ste)5892 AGCAAAGUCGGCUCCGAGGCCCCUGAC

1

0 coding gene

CG11373-RA¦CG11373

5893 AAUCAUGCCGACGGGCGCUGACCCCCUU

1 no match

5894 AAAGCCGUACCUGUUGGUUUGUCCCAUU

12 ncRNA

5895 UUCUCAGAGAGCAAAUUGGCAAG

1

0 transposon

5896 CGAGUUAAUAUGGCACCAAGCUGA

1

0 no annotation

5897 AAGUGGUACGCGAGCUGGGUUU

1 no match

5898 AUCCGCACCCGUCUCCCCCACAUCCGUA

1

0 coding gene

5899 AAGGACACGCAUGCACGAGCGGUGA

1

0 coding gene

5900 CACCAUAGUGAACUGGCUCGAGAU

1

0 transposon

5901 AGGUGGACACUCAGCCUAUUCGCACUC

1

0 coding gene5902 CCUGCAGAGAAUGCACCCGCUUGA

1

1 transposon

LINE

G2

5903 CUGGAGAUCAAGGCUCUCAGCCCGGC

1

0 transposon

LINE

Rt1b

5904 UGCUCUCGAACGUAUGCCCGAUA

1

1 transposon

LINER1-element5905 CAGGAGACACGUCGCAAGAAGGAU

1

1 coding gene

5906 AAUAGUGUGUUAGAGGGAGAUGA

1

0 transposon

LTR

invader4

5907 ACCACCCUGAACGCACCCGAUCUCGUC

1 no match

5908 UAGAUGUCUGUACGAAAGCGAGA

1

0 transposon

LTR

Dm88

5909 ACGCAAACUUCUCAACAGGCCGUAC

1

0 ncRNA

5910 CGGGAAACCUCACCCGGCCCGGACACGG

1 no match

5911 AAAAACCCGAAGAUGAUCCUGAGUC

1

2 transposon

LINE

Helena5912 CACAUCAACAGAAAGCGUAUCCAG

1

0 transposon

LINE

G2

5913 AGAGAGAUAUGGUAGAUGGGCU

10 ncRNA

rRNA

5914 ACGAGUAAUAAUGAGCGCCCAGAGUGA

1 no match

5915 GAUCAUCCAGAGUCUGCUCAACUU

1

0 coding gene

CG9917-RA¦CG9917

5916 GUGGAAAUGAAGAACUGUGAGG

1 no match

5917 UCCCAGAUAUGUUACCUCGUCGGCU

15918 GGCCAAGAGCUGAUGACGAGUUAACUUU

1 no match

5919 GCGCCGGCGGCUUUGGUGACUCUAGAU

1 no match

5920 GAGAAAACUAUUCCUGACCGGUACCC

15921 UCAACUGUGAGGGGUCCUCAA

1 no match

5922 GCGCGGGUCAACGGCGGGAGU

15923 GAGCCAAGACCGUCCCCGAGAAGCC

1 no match

5924 AAACUUCAUCUCAGUCGGAUUAGCCCA
5925 UGGAUACUAAGCAGGGACGUUGAUGA
5926 AGGGUAAUACAGGUGACUGGGGCU

1 no match

5927 GCAUCAUUCAAAGCCAGCUGGAUGCCC

1

1 transposon

LINE

G

5928 CUGAUCGAGGCGAAUAUGACGGUGA

1

0 transposon

LTR

gypsy

5929 UUGCGUAAAGCUGGAUUGACAAUU

1

0 transposon

LINE

Circe

5930 GCCAGAUUGUGAUAAAGUACCGGGC

10 coding gene

CG11739-RA¦CG11739

5931 CUAACUGGAACGUACCUUGAGCAUAU

1

0 ncRNA

rRNA

5932 GGCGCUAAACCAUUCGUAGACGACC

1 no match

5933 ACACCCGUUCCCGUCCGAUCACGGCAGU

1 no match

5934 CGCCAGCUAAGGUCCCUAAAAUUGGCUA

1 no match

5935 ACGAAACGCAACAACAAAAUGGACGGA

1

0 transposon5936 AAAGGGCAAAUGCUGACUUGAU

10 ncRNA

5937 UCCUGGGGUAACCUUGAACUUCGU

10 repeat5938 CAUGACCUUAUUGACGACUUAUCGC

1

0 transposon5939 GUUCCUCGGGAUCAAGGGCAACGAU

1

1 coding gene

5940 UCCUCGAUAGUAUAGGUGGUUUAGUAUCCC

1 no match

5941 CGAUGAUCGAUGACGAGCUACGAAGGG

1

0 transposon5942 UGUAUCGAUAUGAGCAGCAGAACUCCG

1

0 no annotation

5943 CCCAAACGCAGACAUCGAGCGGUCAAU

15944 GCCGCCUGGAUACCGCAGCUAGGAAU

1 no match

5945 UUGUUCCCCGGAUAGUUUAGUUUAC

1 no match

5946 CUACAUACGAGGCGUAAUUGGCA
5947 GAGGCAAUCACCGAGAGCAUCAAC

rRNA
LTR

springer

CG9821-RA¦CG9821
CG32849-RA¦Hex-t2
LINE

X
CG10726-RA¦barr

CG11703-RA¦CG11703

rRNA

0 transposon

LINE

Doc

0 transposonLINEaccord2

0 ncRNArRNA

1

0 coding gene

CG41521-RA¦CG41521

1

0 coding gene

CG12717-RA¦CG12717

LINE

G2
rRNA
trf

LINE

Cr1a
CG40635-RA¦CG40635

LTR

ninja-Dsim-like

0 transposonLow̲complexity

F-element

1

0 transposon

LTR

Quasimodo

1

0 transposon

LINE

F

5948 GGGGAGAAUGAUAUGCACCGAAAGUA

12 Su(Ste)

Su(Ste)5949 CAACCAAUCCCACCAAACCCGU

1 no match

5950 UCCAACUGUGAGGGGAUCUCUAA

1 no match

5951 ACUUGAGACCGCCCCUGGACGACC

1

0 Su(Ste)

Su(Ste)5952 CUACGCCGAAUCCCGGGGCCGAGGG

1 no match

5953 GAUGUACUCCGACGAGUGGACCAGUUC

10 coding gene

CG5186-RA¦slim

5954 CACAAGAAAAGUCCUUGCUCUCCGGGA

1

0 coding gene

CG40609-RA¦CG40609

5955 UCUGGUGGGCGAGGAAAAGUUGAGGAA

1

0 coding gene5956 GCUUCAUCCAAGCGAACUGUGGCCGA

1

0 transposon

LINE

R1

5957 UGAGAAGACGGUCGAACUUGACUU

1 no match

5958 GCAUACGAGGAAGCAUACGAAGAAGCAU

1

0 transposon

LTR

flea

5959 UGUGCUAGAAGACGGAUUUACACGAGG

1

1 transposon

DNA5960 ACCUGAUUGAUAGCGUAGACGACGAU

1

1 transposon

LINE

Rt1a

5961 CGGCCAUAGUGAUCCGGUGGUCCG

1 no match

5962 CAAACUCACAAUUAGGUGGGUCCCGG

1

0 transposon

LINEbaggins

5963 ACCUGGCGUAGAGGUUAACCGUGAUC

1

0 ncRNA

5964 AUCCUGAACGCGCCCGAUCUCGU

1 no match

5965 GACCACAUGGAAACCAAGGUCCCUU

1 no match

5966 UGCUCUCGAAUGUAUGCCCAAUAU

1

0 transposon

LINER1-element5967 AAGGCCAUAAAGGAAUACCCAGAGCC

10 transposon

LTR

gtwin

5968 GCACCGGGAACAUGUGGCUGCGAG

1 no match

5969 AAAACCUGAGGAUGAUCCUGAGUCG

1

1 transposon

LINE

Helena5970 UGAGACUACAAACGGAUUCGCGGACC

1 no match

5971 AAUUCCGUCAACGAGGCCCAAAGU

1

1 transposon

LTR

Rt1c

5972 CACAUCGACGGGGAGGUUUGGCAC

1 no match

5973 ACCCAGCGCAAGAUCAUCCCAAUCGA

1

0 coding gene

CG32473-RA¦CG32473

1360

snRNA

CG4904-RA¦Pros35

5974 ACAACCAAGACGUUUGGCAGAGUG

1

0 transposon

5975 AGAGCAAAGACAAGACAGAGUUUACCA

1

0 no annotation

DNA

5976 AAUCAUGCCGACGGGCGCUGACCCCCC

1 no match

5977 AGCGGGGAAAGAAUACCCUGUUGAGCUUG

15978 AAAACCUGAAGAUGAUCUGAGUCGCAU

1 no match

5979 AAGGAGAGCAAUUUUGGCCGUCA

1

0 transposon

DNA5980 AUGAACCGUAUAUAAAGAUGUUGAU

1

0 transposon

LTR

5981 UGCCGUGGGACGCCGAAGACCAGGAGC

1 no match

5982 AGUUGAACUUGUGCUUCAUACGGGUAGU

15983 UACCACCCUGAACGCGCCCGAUCUCGU

1 no match

5984 CGGUACAUCGUUUCGCCGCGUGGCA
5985 AUCUGGACACCCGGGGCACUGGACU

2 repeattransib4

LSU-rRNA̲Dme
1360
diver20 ncRNArRNA

1

0 coding gene

CG13591-RA¦Ssl

1

0 coding gene

5986 UGCGAGAACAGCGGUUUGCCCUUU

1

1 transposon

5987 UCAACCGGACGGGCCUAGAGUUAUUCCC

1

0 coding gene5988 AAGACCGUAAACGAAAAGCUAAG

1

0 transposon

LTR

Idefix5989 ACAUUCCGAAGGGCAGCAAACCGU

10 transposon

DNA

invader25990 CGACGACGAUCAACGGGAGCACGA

1

0 coding gene5991 UCGGCCCGAACCCUUCUGGUGUAUU

1

1 transposon

LINEbaggins

5992 CCGAAUACGAAGAACAGGCAGAAA

1

1 transposon

LTR

gypsy125993 GCGGAUAUAAAAGCAGCGGGGCGG

10 transposon

LTR

opus

5994 AACCGAUAUGGUUGGACCACAAUCUUUUU

10 ncRNA

5995 CAGUCCGAAACACAUCCCCCGAUUA

1

0 no annotation

5996 UCUCAGUACCCGGAGGAAAGGAC

1 no match

5997 CCCAUGCCGAGCGCAAAAGUUGUUU

12 transposon

LTR

opus

5998 CGAAUAGUGAUUGCGAACCCCCGAA

1

0 transposon

DNA

S

5999 GCAGCCCAGUACUCCGGAGCCCAGGU

10 coding gene

CG11901-RA¦Ef1gamma

6000 CCUCGUCGGUGUUGUCUCCUGGG

10 coding gene

CG12351-RA¦deltaTry

6001 UGCCCCGAAGGUCUUCCAGGCUCUGU

1 no match

6002 UGCAAGCUCUUGACUGAAGUCCCAGU

1 no match

6003 CACCGAGCGGGGCAACCUGAUCUUCGA

1

0 coding gene

6004 AGCGAAAUGACUCUGUCCCGAUUCAAG

1

0 transposon

LINER1-element

6005 UCUGAUGUUACGCCCGAAGAGAUAAC

1

0 transposonLow̲complexity

F-element

6006 CUUAGAUGGGGGACCGCUUGGG

10 ncRNA

5SrRNA

6007 AGUGCCAGGUGGGGAGUUUGACUGGG

12 ncRNA

rRNA

6008 UGCUCUACGAAUGUAUGCCCGAUAU

1 no match

6009 AGAGCCGGGCGUGGAAUGCGAGU

1 no match

6010 ACGAACUUGAGACCGCCCCUGGACGACC

1

1 Su(Ste)

Su(Ste)6011 GGAUCGCGGUUCUAUUUUGUUGGUU

1 no match

6012 UCCCGUAAACCGCCAUCAGCAACACACCC

1

0 transposon

6013 UGCCGAACUUGACGACCCACGAUA

10 Su(Ste)

Su(Ste)6014 AUCCAGGACGAAUAGGCGGGGCACCCAGC

1

0 coding gene

CG31642-RA¦CG31642

6015 ACGAGUAAAUAGUGAGCGCCCGAGAGU

1 no match

6016 GAACUUGAGACCGCCCUGGACGA

1 no match

6017 UUAGAAUGGAUCGGGUUGAAAUUCU

1

0 coding gene

CG41053-RA¦CG41053

6018 UCAAUACCUGGCGAGGACGCAUCUUC

1

0 no annotation

6019 AGAAGACGUAUCUGCCCAGGUUGGUGG

10 coding gene

6020 CAGAUCAGCAAAGUACGAUGGGGA

1

1 no annotation

6021 AGAACGAAAGUCGGAGGUUCGAAGAC

1 no match

6022 CGCCAGCUAAGGUCCCUAAAAUUGGCUAA

1 no match

6023 AGACGACGCCGCCAGUUCGAGAGG

1

1 coding gene6024 CCAAGAAAAAAUCAAAAACGCCCAGA

1

0 transposon

LTR

6025 AUGUUUUCAUCGUUAGACGGCUCGGGCG

1 no match

6026 CAGACCCAACCAAUACAUAAUACAU

1

0 transposon

LTR

6027 UGGGGCCCCGAACCCUUCUGGUGUGU

1 no match

6028 UCGCUCGAUGUCGUGAGGUGACC

1

0 no annotation

6029 ACGUAAACAACCCCAGGCUGACA

1

0 transposon

LTR

Rt1c

6030 AAAACCUGAAGAUGAUCCUGAGUCCA

1

2 transposon

LINE

Helena6031 UCGAUGGCAAACAGGGUUAAUAUUC

1 no match

6032 AUCCUCAACUGUAGGGGAUCCUCAA

1 no match

6033 ACUCGCCGAAUCCCGGGGCCGAGGAGC

1 no match

6034 AAACCUGAACGAUGAUCCUGAGUCGUA

1 no match

6035 AGCCGUACCUGUUGGUUUGUCCCAU

1

0 ncRNA

6036 CCCAAUGAGAUGGCCUUUGGCGAGA

1

0 transposon

6037 CUGCGGAAGUUCAAUUCCCGGUAUGGG

1 no match

6038 AUUAAUACGAAAACUUACAAACAAAUA

1

1 repeat6039 UAGAUGUCCUGGGCUGCACGCGCGC

10 ncRNA

6040 UGCUCUCGAAUAUUUGCCCGAUA

1

2 transposon

LINE

R1

6041 GAAACUCAACUGUGAGGGGAUCCUCAA

1 no match

6042 UACCGAUGGCGAAGGCAGCCCCCUCG

1 no match

6043 CUGUAAAUAAUUCAGCAGCACUGACCGU

10 transposon

LINE

Doc

6044 CAACCGAUAUGCCAUCUUGGCUGA

1

2 transposon

LINE

Doc

6045 UCCAACUGAAGGAGUACGAAUGAUCG

1

0 transposon

LINER1-element6046 GCUAAUACCGAAUAUGACUCCGACCGUC

1 no match

6047 GGUUCGAUUUCCGGGAGAGGGGAGCCUGAG

1 no match

6048 UCGAAUCAACAAAUUGCGCCGAUAU

1

0 coding gene6049 CGAGAUAGUACGAAUCGGUUACG

1

0 transposon

6050 AGGAGGCUAGGAGAAAACAUUUGGGA

1

0 coding gene

CG12324-RA¦RpS15Ab

6051 CCGACGGGGCGGAGUACGAAUGC

1

0 coding gene

CG8184-RB¦CG8184

6052 CUCUGAGAAGCGGACGCGUGA

1 no match

6053 CGAGUUUCGAACGCACCGAAGAUC

16054 AACGCUUAUCACCCCGGAAUUGGU

1 no match

6055 AGAGGUAGACGACCGGGCGAUGGUU
6056 UGUGCGGCCUGCUGGUGUUCACC

CG32064-RA¦CG32064
LTR

diver2CG40635-RA¦CG40635

CG11265-RC¦CG11265

7SLRNA-RA

CG2017-RA¦CG2017

Low̲complexity

F-element

CG13340-RA¦CG13340

CG3219-RA¦Klp59C
blood
297

rRNA
LTR

Quasimodo
trf
rRNA

CG41545-RA¦CG41545
LINEI

0 transposon

LTR

INE-1

1

2 transposon

LINE

R1

1

0 coding gene

CG33931-RA¦Rpp20

6057 AUAAGUAGAACACUUUUGUUUUUGG

1 no match

6058 CGACCAAUGACACCCAAAUGCUGU

16059 ACUCUCAUGCCUGGUCGUACUCAU

1 no match

6060 GCACCCUGGAUCGGACUCGCUAGUCA
6061 CUAACCCUAAAAUACGAUAGACACC

0 transposon

LTR

Dm88

1

0 transposon

LINE

INE-1

1

0 transposon

LTR

INE-1

6062 UACAAUAUCAGAAGUGGGCCGAUCACGA

1

0 transposon

LTR

rooA

6063 CAAACCGACAUGCUAUCUUGGCUGA

1

1 transposon

LINE

Doc

6064 CGCCUUAGACGUAUCGGGAGUCC

1 no match

6065 UACCGAACGGUGCCUGGUUACGAGCUCC

1

0 coding gene6066 GGUAAUCAGCGCCGACACCAGAGUGGA

1

0 no annotation

6067 AACGAGCGCAACCCUUGUCCUUAGU

1 no match

6068 UGCUCUCGAACGCUUGCCCGAUAUUAC

1 no match

6069 AGUCGUCUCAGUUCGGAUUGUCCUCU

1 no match

6070 CAAGACCCGACGCAACCACCUGACAC

16071 GUCAUGCGAGGCGAACCGGGUGAACU

1 no match

6072 AAGACAACUAUGACAUAUGAGACGGA

16073 UAGCCCCGUACGUGAAAUGACCUGUGUG

1 no match

6074 GUAACAACGAAGAUGACUCUGGCCCAG
6075 UAAUAAAGGUGACCGGCAACGACGUCG17344-RA¦CG17344

0 coding gene

CG11241-RA¦CG11241

0 transposon

LTR

gypsy31

0 transposon

LTR

invader4

1

2 no annotation

6076 CAGCUAGACUAUGAAUCCCCGGGU

12 transposon

LINE

Doc

6077 UUGGAACGAAAUUGGCCUGAUUAGCGG

1

0 transposon

LTR

GATE

6078 ACACGGGAAACUUACCAGGUCCGAA

1 no match

6079 AGUUCCCGUGGUAGGCAGUAGUGGGAU

10 ncRNA

6080 GAGAAUAUACACAGAGACUUCCAAA

1

0 transposon

6081 CGGGACGUUCGCCAAUUUCUGUGGCC

10 coding gene6082 UGGAAAGCUAUCCGUGACGCAGACC

1 no match

6083 UAGCUCAAAGGGACGGCGGAUGAUCGA

1

1 transposon

LINE

G2

6084 UCCAAUAUCACCGCGGAGACUGUCA

1

1 transposon

LINE

Doc4

6085 ACCCUGAACAAUACACUACACCGCA

1

0 transposon

LTR

mdg3

6086 GUCUCAUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

6087 CAACAAAGCACCACGGACAUGACGUCA

1 no match

6088 CUGACUGGCUCAGCGUGUGCCUACCCUU

1 no match

6089 UAGGCAGAUGUGCCCGAGCGUGGGAC

1

0 transposon6090 GGUCAAUUCCGAUAACGAACGAG

1

1 ncRNA

6091 UACGACGAGAACGAGAUCAGCGCAA

1

1 transposon6092 UCCGCAGAGGGAGCCUGAGAAACGG

1

1 ncRNA

6093 UUCAAGGUUACCCCACGGAUGCUGU

1 no match

6094 AGGAUACUGAGUCGAUUACCGAGGGC

10 transposon

6095 GCAUGAUUCACGCCCGAUACAUCAAGG

1

1 coding gene

CG33247-RB¦Ste:CG33247

6096 GCGGCUAGACGGAAAGACCCCGUGA

1 no match

6097 CACCGGGCGGACCUUGCUGCGGACCCUG

1

0 coding gene

CG17935-RA¦Mst84Dd

6098 CACAGAGUACGGGCUUACUGAAGUC

1 no match

6099 CACACAGAGGGGAGCAGAUGAGAGCA

1 no match

6100 UCAACCCGUACCGGAUGAUGUUCGCCUCA

1

0 coding gene

CG12225-RA¦Spt6

6101 GUCUAACACGUGCGCGAGUCGGGGGC

1 no match

6102 GAUGUCCUGGGCUGCACGCGCGC

10 ncRNArRNA

6103 CUGGGUCGGGGUUUCGUACGUAG

1 no match

6104 AGGGUUCGAUUCCGGAGAGGGAG

10 ncRNArRNA

6105 CAGCGAUGUAUGGGGCAAGUCAA

1

0 coding gene

6106 GAAGCAUACGAAGAAGCAUACGAUC

1

0 transposon

LTR

invader3

6107 ACUGGGAAGGUGGGACUUGAGU

10 transposon

LINE

G2

6108 GCAAAUUAGAUCCGUAACUUCGGG

10 ncRNA

6109 GGUUAAGCGACUAAGCGUACACGGU

1 no match

6110 UUUAUACCUGAGCCAGUUUGUUUUGC

10 transposonLow̲complexity

F-element

6111 AACUGAAUAAACGAAAUGGAUGACU

1

1 transposon

LTR

invader4

6112 AGAGAACGCACCCGCUUGACCUUAUAAA

1 no match

6113 GAUCGUUGCCCCGCAUCUCCACCA

1 no match

6114 ACGCUGGACGUGAGGUGGUUAGGCU

1 no match

6115 AUGGAAGUCGAAAUCCGCUAAGGAGUGU

10 ncRNA

6116 AACAAUCGCUGUUAAGGCACCGAG

1

0 transposon

6117 UGUGCCCUUGACAGAAACCGAGCUGGA

1

0 coding gene6118 AAUUCCGUAAACGAAGCCCCAAAGUU

1 no match

6119 GACAGCUUUCUCUACUCUAAAUGGA

16120 AGAUUAAACGAGAUUCCUACUGUCC

1 no match

6121 CAAGCAAGCAAAUUCUAUUUUUAGA

16122 CGCCCAAGGAUGAGCCCGCGUAGGA

1 no match

6123 AUCCGCACCCGUCUCCCCACAUCCGUA

1 no match

6124 AAUGGCUCUCUCAGUCGCUUCCCGG

1

1 ncRNArRNA

6125 GACCGACUGGCGGACUGGGACCCU

1

0 coding gene

CG34168-RA¦CG34168

6126 UCUCAUCGUCGUAGAACAAGUCCGA

1

1 Su(Ste)6127 ACUUGAUUGCGACGAACUUAGGGAAA

1

1 transposon

6128 AGCUGGUUCCCUCCGAAGUUUCCCUC

1

1 ncRNA

6129 CGUACACGAAAAGUGAAACCUGCGCC

10 ncRNA

6130 ACCGAAUUAAUCGCGAGGCUGCAGAA

1

2 transposon

6131 AACAUGCAGAUCGUAUGGUCUUGUACCGA

10 ncRNA

6132 AUGGAACACAUAGGGGCUUCGAGGA

1

0 transposon6133 AUGACGGUACCCGGAGAAGAAGCCCCG

1 no match

6134 UUGGUUAGGACUUGGGCGAUUUAAG

16135 CGCCGAAUCCCGGGGCCGAGGGAGC

1 no match

6136 GGCAACCCCAGAUGUCCGUGAUC

1

0 transposon

6137 GUGGCCUGAUUGCUAUGCACCGAAA

10 repeat6138 CUGACAUUUAUACAGUGCAUUGGACA

1

1 transposon

LINEbaggins6139 CAAGAUAUGACCAAAAGCAAAGACAC

1

2 transposon

LINE

F

7SLRNA-RA
LINE

Doc3
CG5193-RA¦TfIIB

Su(Ste)

LINE

Cr1a
rRNA

LTR

frogger
rRNA

LTR

G4

CG42398-RA¦SteXh:CG42398

rRNA

rRNA
LINE

accord2
CG5405-RA¦KrT95D

0 transposon

LTR

opus

0 transposon

LINE

Cr1a

Su(Ste)LTR

HMS-BeaglerRNAalphagamma-element

LTR

mdg3
rRNA

LTR

0 Su(Ste)HMS-Beagle
Su(Ste)LTRninja-Dsim-liketrf

6140 AGAGCUAUCCGAGUCCUGAGAGUCUG

16141 UCCAACUGUGAGGGGAUCCUCAA

1 no match

0 coding gene

CG31287-RA¦CG31287

6142 CACAUGAACUUGGAAUUCCCAGUA

16143 GGAUAAAAGGUACUCCGGGGAUAAC

1 no match

0 ncRNArRNA

6144 CGGAGGAGUUCGAAGGUACGCUAGUU

1 no match

6145 UGCUUGGGCUACAUAUGGUUGAGGGU

11 ncRNA

6146 ACUACUGUCAAAACACGCAACGGGU

10 transposon

LTR

invader2

6147 CCAUGACCUAAACACGAUUCUAGAUG

1

0 transposon

LTR

Idefix6148 UGUUUCAUCGUUAGACGGCUCGGGUU

12 AT-chX

AT-chX-B

6149 CCGAGGAGAUCGCCCUGGCCACCGU

10 coding gene

CG6058-RB¦Ald

6150 CUCCCCGCGGAAAGACGGAAAGACCC

1 no match

6151 GGCGGCGUCCGGUGAGCUCUCGCUGGCCC

1 no match

6152 AGAGACAGGAUCAUAUGCCGCCGCCU

16153 GACGUCGGCGCGAGCCCUGGGAGGAGU

1 no match

6154 CCGAUAACGAACGAGACUCAAAAUA

1 no match

6155 UGAAGUAUUAGAGGGUGACAGGUAU

16156 ACCACCCUGAACGCGCCCGAUUUCGU

1 no match

6157 CAACCAAAGAGGCAUUGCAUUAGCGA
6158 CGACGUACCCGGCCAGAUCAUCGAC
6159 UUUCAAGGUUACCCCCAGGAUGCUGUGC

1 no match

6160 AUGUACAAUGCUGCCGGGUUUGCCAA

1

1 transposon

LINE

G2

6161 AUUCCGAAAAUGCGAGUUCCUCAA

1

0 transposon

LTR

Rt1c

6162 AACCCUUUCAUGCUUGGGAUU

12 ncRNA

6163 UCCGAUCAGACGAGAUGGCCAACAU

1

1 transposon

6164 CAGAUCAACAAAGUACGAUGGGGAC

1

1 no annotation

6165 ACCGAAUACGAAGAACAGGCAGA

1

0 transposon

6166 AACUGAUAAACGAAAUGGAUGACA

1 no match

6167 GAUCCAACUGUGAGGGGAUCCUCAA

1 no match

6168 GAGGCUGAGAUUUGCUGCAGUUCUGA

1

0 coding gene6169 CUCGAAUGUAUGCCCGAUAUACGGAGCGU

10 transposon

6170 AGCGCGAAGAAGAUGACUGGCCC

1 no match

6171 AACGGAGUCUAACACGUGCGCGAGU

1 no match

6172 ACGGUACUGAUCAACUAAAGGAUGCGC

1

0 no annotation

6173 GGACAAAACAACAUACCGGGAAAUGAG

16174 CGUAACUCAAACGUCGAGCAUGAAA

16175 GCAUUCGAGACCCAACGGCACGUrRNA

0 transposon

LTR

springer0 transposon

LTR

micropia

1

0 transposon

Simple̲repeatI

1

0 coding gene

CG11785-RA¦bai

rRNA
LINE

Rt1b

LTR

gypsy12CG8318-RB¦Nf1
LINE

R1-element

1 transposon

LINEbaggins

1 transposon

LINE

R1

1

0 transposon

LINE

INE-1

6176 GACCUACGAAAUGAGCUGUCUGAGU

1

1 coding gene6177 GGAGUUAAAAAAGCACGUCAUCCC

1

1 Su(Ste)6178 AACCAAUCCCAACCAAACCCGUCAAAC

1

0 transposon

LINE

G2

6179 CUGUCAGGUACCCCGUUCAGACCUAG

1

0 transposon

LINE

Rt1b

6180 UGCACCAAAAUGGACUUCAACUUGCAGU

10 coding gene6181 GACAACGCGAGAGUCAGAGUGACCAA

1

0 transposon

LTR

Idefix6182 ACUUCAUAACCGAGCGACUGUUCCAU

1

2 transposon

LTR

GATE

6183 CCGGCGAAAAUUCGAGAGUCGCAAG

1

0 transposon

Unknown

RR509606184 UGGGAAUGGCUUCACAGUUCUGC

10 ncRNA

6185 GAUAUUCUUAACCCGACACAUAUG

1

1 no annotation

6186 ACCAGCGGGAUACCUCAUACUCGAGUA

1

1 transposon

6187 UAACGGAGGUGUCCCAAGGCCAGC

1

0 ncRNArRNA

6188 CUAAGCCCCGAACUGUGACACUGGC

10 coding gene

CG31093-RA¦CG31093

6189 AAUAGAAGCAUUUGGGGCAUUAGU

1 no match

6190 UAACCGUCAUUCCAGCGCAAGUUGCCCCC

1

2 transposon

LTR

ninja-Dsim-like6191 GCGGAGUUAAAAGCGUUUACGUUC

1

0 transposon

LTR

micropia6192 UCCCCGGAACCGAGAGUCUCCUGCCA

1

0 coding gene

CG34241-RA¦CG34241

6193 CCCCGGAUAGUUUAGUUACGUAGC

1

0 ncRNArRNA

6194 AGCCUGUGGGAAUACUGCCAGCU

1 no match

6195 ACCCUGAGGCCAUCGAUGAUGUGAGA

1 no match

6196 ACCACCCUAAACGCGCCCGAUCUCGUC

1 no match

6197 UUGGAGCUUUACGGAACUGGUUGAC

1

0 no annotation

6198 CAGGCAAAUACUUGGAGUUGUGGC

10 transposon

6199 UCUUGUACCGACGACAGAUCUUUCAAAU

1

0 ncRNA

6200 GACCAAUACCUCGAUUUCCUAAA

1

0 transposon

6201 GCUCGUUCUGGGUAAAUAGAGUUUC

1

0 ncRNA

6202 AGCGGGAUUAUUACAGAUGAUGGAUCA

1

0 transposon

DNA

H

6203 CAAGCUAGACUAUGUAUCCCCGGU

1

1 transposon

LINE

Doc

6204 ACCGUUUACACAUUUAUAUUUUUUGU

12 transposon

LINE

Cr1a

6205 AUGACAGACAUCCGAGAAAACAAGAGC

1

0 transposon

LTR

gypsy36206 UGCCUCGAACUUCCCGAGAUCGUUAC

1

0 coding gene

6207 UCUCAUCGUCGUGGAACAAGCCCGA

1

1 Su(Ste)6208 AAGAACAACAACGCAGACGGCGCC

1

0 transposon

6209 UUCCGAUAACGAACGAGACUCUGGC

1 no match

6210 ACCCAAAGACCGUUGAAAGCGAGGUGA

1

0 coding gene6211 AAACCAUCAGAGACUGCGGUGGCCAA

1

0 coding gene6212 UCACGAGUGAUCCAGUAAAUUACC

1

1 transposon

LINE

Quasimodo

6213 UUGACAAGAAAACGAGAGAACGCUUC

1

0 transposon

LTR

blood

6214 UAGUAAAUAAAACGAUAUUCUCGAAGU

1

0 transposon

LTR

diver26215 CUCUCAUCGUCGUAGAACAAGCCCG

1

1 Su(Ste)6216 GAUACUCGAAGACACCACGGUGAA

1

0 transposon

LTR

ninja-Dsim-like

6217 GCCGAACGUAGUCUCUCGAGAGGG

1

1 transposon

LTR

invader1

6218 AGCGAAAUGACUCUGUCCCGAUUCA

1

0 transposon

LINER1-element6219 AAGUCACAAGACCCCUUUGCCCGUGCCC

1

0 no annotation

6220 GCAAGGACGAUUGAUGCUACAGUAUU

1 no match

6221 AGAGAUUGGAUGGCCAUUAGAUG

1

1 transposon

LTR

frogger

6222 AAUUAUGACAACAUACCGGUUAAG

1

0 no annotation

CG40084-RA¦CG40084
Su(Ste)CG3517-RA¦CG3517

alphagamma-element
LTR

DNA

micropia

Bari1
rRNA

LINE

Porto1
rRNA

CG11856-RA¦Nup358
Su(Ste)LTR

diver2CG6279-RA¦CG6279
CG12717-RA¦CG12717

Su(Ste)6223 GUGCUAGAAGACGAUUUUCGGGU

10 transposon6224 CAGCGUCCCGUGCUGAUAAAGACCCACU

1

0 coding gene

DNA

1360

6225 UGGCCUAUCGAUCCUUUAGUCCC

1 no match

6226 UAGCUAAUUAACACAAUCCCCGGGGGC

1 no match

6227 GUGGCAAUAUCCCCAAGGUGCAAGA

1 no match

6228 CAAACUAUCAUGGAAUUGCGCCGG

1

0 transposon

LINE

Doc4

6229 GGAGAACUUUGGAGUGAAGACCGC

1

0 transposon

LTR

ninja-Dsim-like

6230 UGUUUCAUCGUUAGAUGGCUCGGGCG

1

1 AT-chX

6231 CAAACCGACACUGGUGCGCGAGAUGAGU

1 no match

6232 AGCAGUGCCCGGGAUGUCCAGCGACU

1

0 coding gene6233 AGCUUCAUCCAAGCGAACUGUGCCG

10 transposon

LINER1-element6234 UGGGAACACCGCGUGUUUGUUGGCCU

1 no match

6235 UCACCGAGGCGGCACUCGCAAUCUGCAA

1

1 transposon

LTR

opus

6236 GUAACAACGUCUACAUCCCGCUACC

1

0 coding gene

CG13591-RA¦Ssl

6237 CGUCGCCUACGAGCCGCACCCCGCU

1

0 coding gene

CG11770-RA¦lin

6238 GAUGCCGGAGGACGUAAUGGUGCCCG

1

0 coding gene

CG11703-RA¦CG11703

6239 CAACUGCCCGAGGUUGACCACGAUGA

1

0 coding gene

CG1365-RA¦CecA1

6240 UUUCCCGAAAUCCGAGUGAAUAUGGCA

1

0 no annotation

6241 GAAUCCUCAACUGUGAGGGAUCCUCAA

1 no match

6242 ACAGAUUCCGCAGUGCGUUGAUA

1

0 Su(Ste)6243 UGUUUGUAGUUGUACUGACCCAGUCGG

1

1 transposon

LINEbaggins

6244 AACUGAAUAAACGAAAUGGGUGAC

1

1 transposon

LTR

invader46245 GAGAAACUUAUCGACUAAUCGACUCGC

1

0 transposon

Unknown

RR509606246 UAUCGACGAAUGAUCCAGGCUUGUUU

1

0 no annotation

6247 UUCAACCGGACGGGCCCUAGAGUUAUUC

1 no match

6248 ACCGAAUUAAUCGCGAGGCUGCAAGUA

1

2 transposon

LTR

mdg3

6249 UACGAUUGAAAAAGAACUACUAG

1

0 transposon

LINE

McClintock

6250 CAGGUCAUUUCUGGGACUGGCCAGU

1

0 transposon

LTR

FB

6251 CGCAUUGAUUACGUCCCUGCCCUUUGUA

10 ncRNA

rRNA

6252 GCCCUAGUUCUAACCAUAAACGAUGCA

1

1 ncRNArRNA

6253 GCCCGUAUAACGUUAAUGAUUACUAGAU

1

0 ncRNArRNA

6254 UAAUUCCGAUAACGAACGAGACUCAAAU

1

0 ncRNA

6255 UGUGAAAAGAUCCUGCUUGAAUAUGACC

1

0 transposon

DNAS6256 GCUCAAGAUAGGCAGAUGUGCCCGAU

1

1 transposon

LINE

Cr1a

6257 UGUUACAAUGAUCUGAUCGGGUU

10 transposon

LINE

Cr1a

6258 GCCCGAUACAUCAGGUCAGAGCGUGGCC

10 repeat6259 UUCCGUAGUGUAGCGGUAUCACGUGUGC

1 no match

6260 AAGAAAAACAUGAAGCGCCGUUGU

1

0 transposon

LINE

TART-A

6261 AGCUAGAUAAAAGCUUUUGGGGCGA

1

0 transposon

LINE

Cr1a

6262 CAAGAUAUGACUAAGCAAAGACAC

1 no match

6263 UGAUACGGAGAAUGACAAUGGUUGA

1

1 transposon

LTR

gypsy36264 GUACACAGAGGAGAGCAGAUGAGAGCA

1 no match

6265 UUCGCAAAAGUUGACCGAACUUGAUU

10 ncRNArRNA

6266 AUGGCACUCUCAGUCGCUUCCCGGGA

1

1 ncRNArRNA

6267 CCCGGGGCGUUCUAUAUAGUUAUGUA

10 ncRNA

6268 GAGGUAACGAUGGAGUUUGACGGCA

1

0 transposon

LTR

flea

6269 AGAACUGGCGAUGCGGGAUGAACA

1 no match

6270 AGAACCUGAAACCGUAUGCGUACAAGC

1 no match

6271 CCGAGCUGUGACCAUCGAGCUAGGAAA

1

0 transposon

LINER1-element6272 AUGGCAUAAAAUAGAUAACCUGCUGAA

1 no match

6273 CAAGGUCUCUGGAGGAAUUCAAU

1 no match

6274 GGCAGUCAGAGGCGAUGAAAGACGUGA

1 no match

6275 CACCUUGGGAAUGGCUUCACAGUU

10 ncRNA

alphagamma-element6276 AGGGUCGAAACGAUCUUAACCUAUUCU

1

0 ncRNArRNA

6277 GCGUGAGGAAGGAGGGAUGAUGU

1 no match

6278 CCUGGGAAACGGGGCGCGGCCGGA

1 no match

6279 AAUGGAAGGAGGCCUUGAUAAACGAG

16280 AAAAAAGGAAUUGACGGGGGGCCCGC

1 no match

6281 CGGAAGCUUCCUUGGCCCAUAUG

1

0 transposon

6282 UUGAAGCAUAUUCCCGAUUCGGAAAAGG

1

0 no annotation

6283 UACAAUGAUCUGAUCGGGUUUUUCUG

1

0 transposon

6284 AGGGACAUUAUUGUGGAAAAUGUGA

1

0 no annotation

6285 AAACUGAUAGACAGAUGGACGGA

1

0 Su(Ste)

6286 GCCACCGAGAUAUGAGGACGACGACG

1

0 transposon

LTR

ninja-Dsim-like6287 AGCUUCAUCCAAGCGAAACUGUCGCCCGA

1 no match

6288 AUCAAUCGCUGAUAAGGCACCGGGAUAU

1

2 transposonLINEaccord2

6289 GUCGAGAGAUAUCGGAGGAGUUU

1

1 ncRNA

6290 GCGAAGAUGUAACGGGGCUCAAGACAC

1 no match

6291 CACACAGUGAAGACGAGACUGCAG

16292 GCCCAGGUGGCGGAAUUGGUAGACGCACU

1 no match

6293 ACUCAUAUCCGAGGCCCUGUAAU

10 ncRNA

6294 UAUUGUAUAAAACUUCUUCGUCACAU

1

1 transposon

6295 ACCCUGAACGCGCCCGAUCUCGUCUU

1 no match

6296 AACCCGGAUUGAAGCAACCAGAGAA

1

0 coding gene

CG4704-RA¦CG4704

6297 CUGCCGCGUGCCCACCGACUACGUG

10 repeattrf

6298 CAUGCUUGGGAUUGUGAACUGAAACU

1

0 ncRNA

rRNA

6299 GAGACCCGUCGCCGCGCUCUCCCCC

1 no match

6300 UACCGAUGGCGAAGGCAGCCUUCUGGC

1 no match

6301 ACUCAUAUCCGAGGCCCUGUAAUUG

10 ncRNA

rRNA

6302 CCGGGGGAAGUAUGGUUGCAAAGC

1

0 ncRNA

6303 CGCUCUCGAAUGUAUGCCCGAUAU

1

1 transposon

6304 GCACACACAGGAGAGCAGAUGAGAGCA

1 no match

6305 CUCGCCGAAUCCCGGGGCCGAGGGUGC

1 no match

CG1710-RA¦Hcf

AT-chX-B
CG10561-RA¦CG10561

Su(Ste)

rRNA

trf

rRNA

0 no annotation

0 transposon

LTR

ninja-Dsim-like

LINE

Cr1a
Su(Ste)rRNA
LTR

froggerrRNADNA

hopperrRNA
LINE

R1-element

6306 ACGAGCGCAACCCUUGUCAUUAGUUGC

1 no match

6307 GGCCGGCGGGGAAGGUGGCUCGGG

1 no match

6308 ACCCUGCACGCGCCCGAUCUCGU

1 no match

6309 AAGCCCGAUGAACCUGAAUAUCCGUUAUG

10 ncRNA

6310 AGCAACUGAGCCCAAGAAAAUCGCC

1

1 transposon

LINE

Doc

6311 UACAUUGCUAUGUUGACGCGGAUUG

1

0 transposon

LTR

DM88

6312 UGAGAAGUUAUGGUUGGCGAAGUCG

1

0 transposon

LTR

Idefix6313 GAGGUCUCCGGACGUGAUCACUGUGUGAC

1 no match

6314 AAGGCAUGCCCGAUGUCCGCGAGA

1

0 transposon

LTR

opus

6315 GUAAAGAUGACCCGUGAUUCCACCGGGGA

10 coding gene6316 CGGACCGAAAAUCCUUUACUGGA

1

0 transposon

LTR

DM88

6317 CUGAAUAAACGAAAUGGAUGACA

1

0 transposon

LTR

invader46318 CCCGCGGUCAGACGGAAAGACCCUA

1 no match

6319 AGCUUCAUCCAAGCGAACUGUUGCCCGA

1 no match

6320 CUGAAGGACUUGCUUGCGUUGCAGGA

1 no match

6321 ACCAGACGUAAUACUCCACUACCCGA

1

2 transposon

LTR

HMS-Beagle

6322 ACCGAAUUAAUCGCGAGGCUGCAAGAU

1

1 transposon

LTR

mdg3

6323 CAUGGAGCUAACCGAUACUAAUUG

1 no match

6324 ACCAGACGUAAUACUCCACUACCCG

1

1 transposon

LTR

HMS-Beagle

6325 UCCUAGAAUCGACCGACCAGCUGUGCG

1

0 transposon

LTR

invader36326 GAUCCACAUCAAUAGUCCCAGCGCC

10 coding gene6327 UGCUCUCGAAUGUAUGCCCGAUUU

1

1 transposon

LINE6328 GGAGUCUAACAUGUGCGCGAGUC

1 no match

6329 GAUGAUUUAAUUCUAGCGUCCCAGU

1

0 transposon

LTR

6330 UGAUUUGUCUGGUUAAUUCCGAUAACG

1

0 ncRNA

6331 AAAACCAUUCGUAGACGACCUGCUUC

1 no match

6332 UCCGGUUCCGUCACGUAGAGUCAG

1

0 transposon6333 GGGGUGCGAGAGGUCCCGGGUUC

1

1 ncRNA

6334 CGGAGCCGGACUACCUUGACCUCUU

1

1 transposon

LTR

diver26335 ACGGAAUGGAACCGAGCUCUGAGUAAU

1

2 transposon

LINE

X

6336 CAAGACAAUAUAUUGCGACAACGAA

1

0 transposon

LTR

gtwin

6337 UUCACCGGACGUCGAGGACAAGUUCA

1

0 transposon

LINE

INE-1

6338 CCGAACUUGAGACCGCCCCUGGACGUACC

1

2 Su(Ste)6339 UCGCCGAAUCCCGGGGCCGAGGG

1 no match

6340 UGGAGCGUUCUGCCUUUGGGGUUGA

1

0 transposon

6341 GUGCUCGUUCUGGGUAAAUAGAGUUUC

1

0 ncRNA

6342 CGAGGAGACCUGUUAUACAUCUGCGA

1

0 transposon6343 GACGCGCAUGAAUGGAUUAACGAG

10 ncRNA

6344 GUGUAACAACUCACCUGCCCGAAAGCAA

1 no match

6345 GAGCUUGACUCUAGUCUGGCACGGU

1 no match

6346 UACUGACGAAUUUAGUUACAAGCA

1

0 no annotation

6347 GCAAAGAGAACGCGACCAACUGAAUGGC

1

0 no annotation

6348 ACGAUUUAAGUCCUUCUUAAAUGAGGCC

10 ncRNArRNA

6349 AAGACCCCCGAAACCAGACGAGCUACCU

1 no match

6350 AAUCGAAUGAGACCUUGGAGGA

10 ncRNArRNA

6351 UUGAAAAUUUAUGGUGGGGACACGCA

10 ncRNA

6352 UAGACAGAGAUAUUACCAGAAGCCAC

1

0 transposon

LTR

gypsy46353 ACGGAUGGAAUCGAGCGCUGAGUA

1 no match

6354 UCCAAUACCACCGCGGAGACUGUCGC

1

1 transposon

LINE

Doc4

6355 ACCCUUUUCACAUUUUCGCCAACCGG

10 coding gene6356 CGAGAUGACAACCUUGGACCUGAC

1

0 transposon

6357 AUUGGACCAUGUGCUCCUGGAGGACCC

1

0 coding gene

CG11719-RA¦Mst98Ca

6358 UCAAGUCAGAGCGUGGCGUGAUUGCUA

10 coding gene

CG42398-RA¦SteXh:CG42398

6359 AAACAGGAUUAGAUACCCUGGUAGUC

1 no match

6360 GCAACAUGUCGAGACCGAAGUAAC

1

0 Su(Ste)

Su(Ste)6361 UUGGACACGAGCGACGGCGAGCAGACC

1

1 coding gene

CG9715-RA¦CG9715

6362 UCAGAACUGGCACGGACUUGGGGAAU

10 ncRNA

6363 CAGACCGUGAGCGGGUGCAGCCGAU

1

0 transposon

6364 UACAUUUGUACCAACUCCGAGAUAUAC

1

0 coding gene6365 GUUGCAAUUAAAACAGAUUCCGCAGUGC

1 no match

6366 UGCUAACGAAACAGUAACACUAGGC

1

0 transposon

6367 AACUACUUUCAGGACACGUUCAACCAGA

1

0 Su(Ste)

Su(Ste)6368 ACCGCUUGGACCGAACACUUUGAAA

1 no match

6369 UACGGGCUCGACAUGUUGCCAGUUCAC

1

0 Su(Ste)

Su(Ste)6370 CCCUUAGAUGUCCUGGGCUGCACGC

10 ncRNA

6371 CGACUCGUUUUUAAAUUUCGCAACAA

1

0 transposon

LINE

Cr1a

6372 ACCACCCUGAACGCGCCCCGAUCUCGUCC

1 no match

6373 CCCUAAACGAAAAGAGUGAUCCACAAA

1

0 transposon

LINE

S

6374 GUGGAGCCGGGCGUGUAAUGCGAGUG

1 no match

6375 AGCUCUCGAAUGUAUGCCCGAUAUA

1

1 transposon

LINER1-element6376 AACCCGCACUCUUAGACCGACAAGA

1

0 no annotation

6377 UGCUCUCGAAUGUAUGCCCGAUAUUAC

1 no match

6378 GAUGCAAACUCCGAAUACCAGCAAGU

1 no match

6379 ACAAGAGAAAAUAUAACGACCGGUGA

1LTR

McClintock

6380 ACGGAGAAGGUUAGCUCAGCCGGGU

1 no match

6381 UUAAAGGAAUUGACGGAAGGGCACCACC

16382 AACGAGAACUUUGAAGGCCGAAGU

1 no match

6383 GGAUGGCGAUGCCGGACUGAUCACGG

1

0 coding gene6384 UUGGGCCCGAACCCUUCUGGUGUGUUG

10 transposon

6385 CCGAGGUUGAUUGAAUUAGGACUC

1

0 no annotation

6386 ACAAACUCAAGUCCCACCUUCCCA

1

0 transposon

6387 UGCCAGCCCCGUAUAACGUUAAUGAU

1

1 ncRNArRNA

6388 GCCUGAGAAACGGCUACCACAUCUAA

1

0 ncRNArRNA

1 transposonrRNA

CG33322-RA¦CG33322

CG5016-RA¦Mst57Db
R1-element
1731
rRNA
LINE

Rt1b
tRNA

Su(Ste)
LINE

G2
rRNA

LTR

ninja-Dsim-like
rRNA

rRNA

CG41521-RA¦CG41521
LTR

micropiarRNA
Low̲complexity

F-element
CG11714-RA¦CG11714

LTR

IdefixrRNA

0 ncRNArRNA
CG15657-RA¦CG15657
LINE

bagginsLINE

G2

6389 CCCAUGAGCGAGUCAUUCCGACAAC

1

1 transposon

6390 AGAUACCGCCCUAGUUCUAACCAUA

10 ncRNA

LTR

blood
rRNA

6391 CCAAUUCAAGGACAUUGCCAGGUAGGGA

10 ncRNA

rRNA

6392 UGAGACUACAAACGGACUGCGGAC

1

1 no annotation

6393 AAGAGGGACGGUCGGGGGCAUUCG

1 no match

6394 GUGCACAUAUACCGAGGCCAACGAUCG

1 no match

6395 CAGGCAUUUAAGUUGUAUUGUGAG

1

0 transposon

LTR

diver26396 GAUAGGCCGAUAGCGUACAUUUCC

1

0 transposon

LTR

opus

6397 GCUGAAGAAGGUCCCAAGGGUUCGG

1 no match

6398 AGGUUGCGUGUUCAUCACGUCGGGG

1 no match

6399 UGCUCUCGAAUGUAUGCCCGAUAUUUA

1 no match

6400 UGGAAUCGGGUUUGCAGAUUGCCCU

1

0 transposon

LTR

gypsy126401 CUCCGGACAAAAGUUGACCGAACCUGA

1 no match

6402 UUCCUCGGAAUCAAGGGCAACGAGU

1

0 Su(Ste)

6403 UCCUAGUAUUCUUCCGGAUGAUCCACC

1

0 transposon

6404 CGCGAAAGACGGAAAGACCCCAUG

1 no match

6405 CAGCGAUGUGUGGGGCUAGUCAAA

16406 ACGGGGGGCUGGCGGUGCGGCGAC

1 no match

6407 AAGGGUCGGGUAGUGAGGGCCUU

1 no match

6408 CACAAACGCACCAAGCAUGUUGACA

1

0 no annotation

6409 UUCGAUUUCAAGUACCGGGCGAAC

1

0 repeat6410 UCGGCCCGAACCCUUCUGGUGUGUUAU

1

2 transposon

LINEbaggins6411 UGUGCUAGAAGACGAUUUUCGGGAC

1

0 transposon

LTR

HMS-Beagle

6412 UGAGUGUAAAGACGGAGUGUGCCCCAA

1

1 transposon

LTR

ninja-Dsim-like

6413 CUUCGGGAUAAGGAUUGGCUCUUAAG

1

1 ncRNA

6414 ACCGUAUUAGAUCAGUUGACUCUCCUCC

1

0 no annotation

6415 AGCACUUGGGACGCCGUUUACCC

1

0 coding gene6416 AAUUCCGUAUAACGAACGUAGACUCUGGC

1 no match

6417 GUUUGUGGCUUCAGACGGCGAGUGGC

10 coding gene

6418 AGCUUCAUCCAAGCGAACUGUGGCUGA

1

1 transposon

LINE

R1

6419 GCCAAUUACAUUAGACGAGACGGCCCC

1

1 transposon

LTR

opus

6420 ACGAGUAAUAUGAGCGCCCAGAGUGG

1

1 transposon

LTR

opus

6421 AUAAGUAGAACACUUUUUGUUUUUUGG

1

0 no annotation

6422 UCUAGGACUACCAUGGUUGCAACGGGU

10 ncRNA

6423 GUGGCAUGUUUCCGGAUUCCCGAC

1

1 ncRNA

6424 UGAACAUCGAGAAUACUGCACAGCC

1

0 transposon6425 UCGGAAUGCCGGGGCGAGGAGGAGG

1

0 Su(Ste)

Su(Ste)6426 UCACCAAGCGUUGGAUUGUUCACCCAC

1

1 ncRNA

rRNA

6427 GCGGGACAUGUGGCGUACGGAAGACCC

1 no match

6428 UGAGCGUGAAAUCGUCCGUGACAUCA

1

0 coding gene6429 GAUUCAUACCUGAGCACUUUAACA

1

0 transposon

LTR

gypsy86430 GACCAUAUCCGAAGACGCGGCGCU

1

0 transposon

LINE

Rt1b

6431 UAAGUUCUCGGCUGAUCAGUACCCA

1

0 transposon

LTR

Quasimodo

6432 GACUGCAUCGCUUGAAUCCAGGAGA

1 no match

6433 AGCCGUACCUGUUGGUUUGUCCCAUUA

1

0 ncRNA

6434 GCAUCGAGAAUAUUACACAGCCAUUA

1

1 transposon6435 GAAGGAAUUGACGGAAGGGCACCA

1

1 ncRNA

rRNA

6436 ACAACCUCAACUCAUAUGGGACUACCCC

10 ncRNArRNA

6437 AGAUGUCCGGGGCUGCGACGCGCGCUAC

1 no match

6438 UUGAUACCUUGGCCAGAUUGUUCUA

16439 AACCGGAGGAAGGUGGGGAUGA

1 no match

6440 UGCCCGUAAAAGCGACUUGGUUGACAC
6441 UUAUGCCUGAGCGCCUCUAAGGUCGU

Su(Ste)DNA

1 Su(Ste)S
Su(Ste)RSPrRNA
CG12717-RA¦CG12717
CG10596-RA¦Msr-110

rRNAalphagamma-element
LINE

Doc

CG4027-RA¦Act5C

rRNA
LINE

Doc

1 transposon

LINE

Doc

1

0 transposon

LTR

gypsy

1

1 ncRNA

6442 GAACUGCUCAUUCCGAACAUACACCGA

1

0 transposon

LINE

Doc

6443 UAACGAGAGAAGCAUUUUUGCCGCAAA

1

0 transposon

LTR

gypsy126444 AGCGGCGAGCGAAGUGGGACCAGCCC

1 no match

6445 GCAUCGGUCGUUCAGUGGUAGAAUGCA

1

2 ncRNA

6446 AAUGAAGACAAUACUUCUCUAGGGGA

1

1 repeat6447 UCAUCUUCUUCUCGACGUUGACCA

1

0 transposon

6448 AACUACUGGACCAGAUGAUACGAGGGC

1 no match

6449 CCGAACUUGAGACCGCCCCUGGAAA

11 Su(Ste)

6450 ACGAGAAGCCGCCGUAUAGCUAUGCC

1

0 coding gene6451 UUCCAAAUCGAGAGACGACCGCCGA

1

1 transposon6452 AAGACAAACAACGCACUAGACUCCGGA

1 no match

6453 GCUGCUCGAACCGGAGGCACAUGCUCGC

1

0 coding gene6454 ACCCUUGAUAAACGGUUGACUUUCAGU

1

1 transposon

LINE

BS

6455 ACCUGGAUUGAUAAAACAAAUGAAC

1

0 transposon

LTR

HMS-Beagle

6456 UGCUUUCUCUGAAGCUAUCGAGUGAGA

1

0 transposon

LINE

Cr1a

6457 AAAACCAAUCCCAACCAAACCCGUCAA

1

1 transposon

LINE

G2

6458 UAUUUCAUCGUUAGACGGCUCGGGC

1

1 AT-chX

AT-chX-B

6459 GUGUAUCAUUUCCUAGCCAUUAUACG

1

0 repeat

LSU-rRNA̲Dme

6460 AGGUUCCGGGGGGAGUAUGGUUGC

1 no match

6461 UCCGAAGAUGACCAAGUUGGCUACCAA

1

1 transposon

LTR

gypsy66462 CAGAUACUGAAACGAGUUGGCAUU

1

0 transposon

DNA

RR514766463 AGUUUAUCCGGUAAAGCGAAUGAUU

1 no match

6464 UGGGGCUCCGGGGGAAGUAUGGUUGCAA

1

1 ncRNArRNA

6465 GAUCACCUGAUGCCGCGCUAGUUU

1

1 ncRNA

rRNA

6466 AGAUACCGCCCUAGUUCUAACCAU

1

0 ncRNA

6467 CGGGAUUCCAUGGGUAGACGACGAAA

1

0 transposon

6468 UCUGGGUCGGGGUUUCGUACGUAGC

1 no match

6469 AAGGAGUGUGUAACAACUCACCUG

10 ncRNA

6470 CCACAGAGUACGGGGCUUACUAAAAA

1

2 transposon

LINEbaggins

6471 CCGUUAGAGUACAUUAGGUAAGUGAGC

1

0 transposon

LINER1-element

rRNA

tRNA
trf
LTR

ninja-Dsim-like
Su(Ste)CG11799-RA¦Mnf

LTR

flea
CG14305-RA¦CG14305

rRNA
LINE

G2
rRNA

6472 UGGGAGGAUCUUCGAUCACCUGAUGCCG

16473 GUGGAUAACCGGGAUCGACACGGCCUGCGC

1 no match

0 ncRNArRNA

6474 ACCCCAGGGACAAGACAGCGCUCAC

1

1 transposon

6475 ACUUGUGCUUCAUACGGGUAGUACAAC

1

0 ncRNA

6476 CGUAUACUGAAGGAAGAGAGUUC

1

0 transposon

LINE

G2

6477 GCUCCUGAUGAAGAAGAGAUGCCC

10 transposon

LTR

ninja-Dsim-like

6478 AAGGAACGAUCGCAAGGCAGCAGU

1

0 transposon

LTR

flea

6479 ACCACCCAGAGAAGUACCAAAAAAGC

1 no match

6480 AGAGGGCGUGGAACCGUUAAGAGG

1 no match

6481 ACGAGCGCAACCCUUGUCAUUAGU

1 no match

6482 CCAUACUGUACUCUAUUUUCUCCUCAGA

1

1 transposon

LINE

TART-A

6483 GCAAUACUAAUUCGAUCCAGAUGCC

1

1 transposon

LINE

Doc3

6484 UCCGAAGUGACCGACCGAAACAGUCGC

1

0 transposon

LTR

diver26485 UGCCCUCGAAUGUAUGCCCGAUAUU

1

2 transposon

LINER1-element

6486 UCUCAUCGUCGUACGAACAAGCCCGAGGU

1 no match

6487 UACGAGAGGAACCGCAGGUACGGACCA

10 ncRNArRNA

6488 GGAUACUAAGCAGGGACGUUGAUGUA

1

1 coding gene

CG12717-RA¦CG12717

6489 AUUCCCCAUGAACGAGAAUUCCCAGU

1 no match

6490 GCAACAGAUACAAAAACGAGCGGACC

1 no match

6491 UGGAAAACCUGAAGAUGAUCCUGAG

16492 UGUUUCAUCGUUAGAGGCUCGGGC

1 no match

6493 AAUAGGGACGGUCGGGGCGAUC

1 no match

6494 CGCACUUUAAGCGUUCGUUGACGU
6495 UCGGCCGAAAAUACGACGACCCCAAG

LINE

G
rRNA

0 transposon

LINE

Helena1

0 transposon

LTR

HMS-Beagle

1

0 coding gene6496 CAGAACUUGAAGUCGCCGAGGCAGCCAG

1

1 transposon

LINE

F

6497 GGACCAACUGUGAGGGGAUCCUCAA

1 no match

6498 GUAGCAAUUACCGACCGGUUUACACGC

1

0 transposon

LTR

G4

6499 AAAUAUACUAUAACCACCAGUUGGGA

1

0 transposon

DNA

S

6500 CGAAAGCAUAGGGACGGACUGCAAG

1 no match

6501 CCAUCCUAAAACUGAUAGACAGCUGGA

1

1 Su(Ste)

Su(Ste)6502 UUCGAGGUUACCCCAGGAUGCUGU

1

1 repeattrf

6503 GCCCCGUACGUGAAAUGACCUGUGUG

1 no match

6504 GGUCCGGAGAGAUGGGCGAGCGCCGUU

1 no match

6505 GCCCGGAUAGCUCGGUCUGUAGAGCAUUG

12 ncRNA

tRNA

6506 UCGCCGAAUCCCGGGGCCUAGGGAGCGA

1 no match

6507 ACUCGAAUCCCGGGGCCGAGGGA

1 no match

6508 UCGAAGGUCUUCGUCCCGGUUUCCA

16509 UCGGCCCGAACCCUUCUGGUGUUUAAU

1 no match

6510 AGCCAAUUACAUUAGACGAGACGGCCC6511 AACUUCAUCCAAGCGAACUGUGCCCGA

CG18743-RA¦Hsp70Ab

0 transposon

LTR

GATE

1

1 transposon

LTR

opus

1

1 transposon

LINER1-element6512 GAAACGCACGAUGGUGUCCAGGAUAUG

1

0 coding gene

6513 AUAAUACACAUCGAUCGAUUACGGACCUA

1 no match

6514 ACAUUCAUAACCGAGCGACUGUUCC

1

0 transposon6515 GUGAACCUGCGGAAGGAUCAUUA

1

0 ncRNA

6516 UCGCCGAAUCCCGGGGCCGAUGGAGC

1 no match

6517 CAAGCUAGACUAUUUAUCCCCCGGGU

1 no match

6518 CUUGUAGUCCACCUGCACCUUGGGC

16519 ACAUUCAUAACCGAGCGACUUUCUAA

1 no match

6520 CAAAAUGGCCGAGAGCUUGUGCAAUGA

1

0 coding gene

6521 AUCUUCAUCCAAGCGAACUGUGCCCGA

1

1 transposon6522 GGACCCCCUCUUCCUGACCACUGCC

1 no match

6523 GAAGUGGAGAAGGGUUUCGUGUGAACA

16524 AAAAGGAGCAAUUUUUGGCCGUCAC

1 no match

6525 UGUUUCAUCGUUAGACGGCCCGGGC

1

1 AT-chX

6526 UCAAAUAGAAAUGGACUCAGAGUC

1

0 transposon

6527 UGCCUGAAGGACGUAUGCCUGUCGCCC

1

0 coding gene6528 CCAAGCUUUUGGGCUCCGGGGGA

1

1 ncRNA

6529 CGAGAUAGUACGAAUCGGUUACGAA

1

0 transposon

LINE

I

6530 CCCGAAGAUAACUCGCAGUCGCUACA

1

0 transposon

LTR

GATE

6531 GUACUUGUUCCCCGGAUAGUUUAGUUAC

1

1 ncRNA

rRNA

6532 GUGGGAUAGCGUACCGGAGUGGAC

10 ncRNA

7SLRNA-RA

6533 AAAUCUCGCGCCGGGCCGUACCCAUAUC

1 no match

6534 UGCUCUCGAAUGUAUGCCCAAUA

16535 ACCCCAGAACGCGCCCGAUCUCGU

1 no match

6536 GAUUCCGCAGUGCGUUGAUAUGGUC

1

1 Su(Ste)

6537 CAACAAAGCACCUGGACAUGACG

1

0 transposon6538 GCCCGUGGACGGUGUGAGGCCGGUAGC

1 no match

6539 AACCACUUUCAUGCUUGGGAUUGUGAA

1

0 ncRNA

6540 UGAUCCUCAA

1

0 transposon

LTR

diver26541 CUACACAAAAAGUUGACCAUAAAAA

1

0 transposon

LINE

I

6542 AGAUGCCGCGACGUAAGCCCACCAUUAA

1

0 coding gene

CG10750-RA¦CG10750

6543 UCUCAUCGUCCUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)6544 GGAAAACGACAACGACGGAAGAGGA

1

1 coding gene6545 CAUCUUGUUAUUCUAGUGUCUUUGC

10 transposon6546 GAAUCUAUGGGUGGUGGUGCAUGGCCGU

10 ncRNA

6547 CGCAAAAUUAUACCCGUACCCAAUGG

1

0 transposon

LTR

gypsy66548 CCGAAUUAAUCGCGAGGCUGCAAA

1

0 transposon

LTR

mdg3

6549 ACGAGCGCACGUGUUAGGACCCGGA

1 no match

6550 UGCGCGAAGAAGGAGGACGAGAAGG

1

0 transposon

LINE

G2

6551 GCCUCAACCAACGCUCCGCAGA

1 no match

6552 CAAUGAGAACGAUUACGAUCCCACG

1

1 transposon

LTR

ninja-Dsim-like6553 AUAUCCGUUAUGGAAAAUUCAUCAU

1

0 ncRNA

6554 GUCGCCAUUGGGACCACUAACUCUC

1 no match

CG13387-RA¦emb
LTR

GATE
rRNA

2 no annotation
CG8580-RA¦akirin
LINE

0 ncRNA

0 transposon

R1-elementrRNA
AT-chX-B

LTR

rover
CG1193-RA¦CG1193
rRNA

LINE

R1-element
Su(Ste)Simple̲repeat

I
rRNA

CG41053-RA¦CG41053
LINE

Cr1a
rRNA

rRNA

6555 AUCCCAGCACUACGAAGCGCCCUUC

16556 UCCGACUUCAAGAACCAGGCGAACAUAU

1 no match

0 no annotation

6557 GCGAUGAACAGAAAAAGAAUCACCCGA

1 no match

6558 AACUGAAUAAACGAAAUGGAUCACACA

1

1 transposon

LTR

6559 CAAGAUAUGACCAAAGCAAAGACUAGA

1

1 transposon

DNA

6560 UUGUCCGACAAUUACCGAAGUGAUGC

1

0 transposon

LINE6561 AAAAACCUGAAAAAUGAUCCUGAGUCGC

1 no match

6562 AAUUCCGAUAACGAACGAGACUCAAAU

1

0 ncRNA

6563 ACGGUAUAUAUGAGGCAGCCAGAGG

1

0 transposon6564 CCGCUAGAGGUGAAAUUCUUGGACC

12 ncRNArRNA

6565 CAUUGCCAAGGAGGACCCCCACAA

1

0 coding gene

CG12918-RA¦CG12918

6566 UACGACGAGAACGAGAUCACGCGCGA

1 no match

6567 AUACCACCCUUACUGUCGUUGACG

1 no match

6568 ACCUACCGGAACAGACGACCAGCCACC

1

0 transposon

LTR

gypsy66569 GCUACGGUCAAUGUCUCUGAGGCU

10 transposon

LINE

Rt1b

6570 GGGGAAAGGACUCGGACAGUUUCU

1

0 transposonLINEaccord2

6571 CGGCUCAUCACAUCCUGGGGCUGA

1 no match

6572 CGGUAAGCGUUGGAUUGUUCACCC

1 no match

6573 UGUCCUGGGCUGCACGCGCGCUAC

1

0 ncRNA

6574 UCCAGAGGCAACUGGAUGCAUUGGA

1

0 transposon

LINE

G2

6575 AAAACCUGAAGAUGAUCCUGAGUCGUU

1

1 transposon

LINE

Helena6576 AAAAGCCUGAAGAUGAUCCUGAGUCGC

1

2 transposon

LINE

Helena6577 GGAGCUGCAUGUAGAGAAGCGAGAGGCC

1

1 coding gene

6578 CACCGACUACAAAGAUGCCAUACGA

1

1 transposon

6579 GCGAUCCACUGAAGCUUAUCCUUUGU

11 ncRNA

6580 ACCCGCUUGACCUUACUCAACACU

1

0 transposon

6581 CCAGAAGGCCCGGGUUCGAUUCCCG

10 ncRNA

6582 UCCUUGGGAAUGGCUUCACAGUU

1

1 ncRNA

6583 GAAACCGUCAUUCCAGCGCAAGUUGCCCC

1

1 transposon

LTR

ninja-Dsim-like6584 GAAGUUGAUACACAAUAUAGACAGGCCC

10 transposon

LTR

Idefix6585 UCAACUGUGGGGGGAUCCUCAA

1 no match

6586 UAGAAGACGAUUUUCGGGCCGAAA

1

0 transposon

LINE

Cr1a

6587 AAAAAACCCUGAAGAUGAUCCUGAGUCGC

1 no match

6588 CGCAAAAGUUGGCCGAACUUGAUU

16589 GCCUCCUGGGAGCUCGGCGGGCGC

1 no match

6590 AGCGAAUCCAGCGUAUCCCGAAGG

16591 ACGAGCUCACGUGUUAGGACCCGAAA

1 no match

6592 UUGAAGUCCACGAAUGUGCCGAGC
6593 GACUACAUAUGGUUGAGGGUUGU
6594 AUCUACAUCGUCGUAGAACCAAGCCGA

1 no match

6595 GAACUUGACGACCCACGAUUAGUAAU

11 Su(Ste)6596 AAAUCCGUAAACGAAGCCCAAAGU

1

1 transposon

LTR

Rt1c

6597 AACGUGUUGAACCAGGCUUCCAG

1 no match

6598 AAUAGAAACGACAGUGUCCCGCGG

1 no match

6599 CGCAAACCCAAAAUGACAAUCGCACGA

1 no match

6600 AGAAGCGAUAUCCGAUGCCGAUUG

1

0 transposon

LTR

diver26601 AAAACCAUAAAGAUAGCGACAGGUUC

1

2 transposon

LINE

Doc3

6602 CUGAUCACAUUGCCUUCGUGUUUA

1

2 transposon

LINE

Cr1a

6603 ACCACCCUGAACGCCCCGAUCUCGUC

1 no match

6604 GAUUACGUCCCUGCCCUUUGUACACAC

1

0 ncRNA

6605 UAUCUCGAAAGACUCGUGCCGAUC

1

1 transposon

6606 GUAAUUUCGGGAUAAGGAUUGGCUCU

1

1 ncRNArRNA

6607 UGCAAUCGAAACGAGAAACUUCAGU

1

0 coding gene

CG12717-RA¦CG12717

6608 GCCCCCUUGAUUUUGAUUUUCAGUGU

1 no match

6609 UACAGAUUCUAGAGACAAAGACGCAGU

1

0 transposon

6610 GUUGAAAGCGAGGUGAACCCGAAU

1

0 coding gene6611 UCCUUGUAGAGGCCUUCUCUUCCCC

1

0 no annotation

6612 AAAGCCAGUUACCGAAGCUGCGGAU

1 no match

6613 UAAAAGAACAUUGAAGCGCUUGACU

1

0 Su(Ste)6614 AAAAACCUGAAGAUGGUCCUGAGUCGC

1

2 transposon

6615 CUGUAACUCGGGAUAAGGAUUGGCUCU

1 no match

6616 AGUCUCAACGGCGAGGUAUCAACGGG

16617 GCACCCGCCCGUUUGACGCCGCCU

1 no match

6618 GCUAAUUAACACAAUCCCGGGGC

16619 CUCGCCGAAUCCCCGGGGCCGAGGGAGC

1 no match

6620 AACCAGCAGCAACUCCGAGCAUCAC

16621 CACCCUGAACGCGCUCGAUCUCGUC

1 no match

6622 UCCGACGAGCUGCUACCCGGGGAUUU

1

0 coding gene6623 AUCUAGGACAAUGAUGCGACCCGUCU

1

0 transposon

LTR

ninja-Dsim-like6624 UCCGCUAGCUCAUUUCCCGGGAUGUU

1

0 transposon

LINE

Fw2

6625 UCCAAAGGCAUAGGGCAAGACAGAC

1

0 transposon

LINE

G2

6626 AGCCGGACGGUGGCCAUGGAAGUCGGAA

1 no match

6627 UCUCCCGCCCACGACUUGACUCCG

1 no match

6628 AGAGGUCUCCGGACGUGAUCACUG

1

1 ncRNA

6629 AUGACAGACAUCCCACGCAUCCAGA

1

0 transposon

6630 GCCCGUGGACGGUGUGAGGCCGGUAG

1 no match

6631 AAAACAAAAGCAUUGUGAUGGCCCU

1 no match

6632 AACACCGAAACGAAAAACGCCGACUGG

10 coding gene6633 AGACCGUAAACGAAAAGCUAAGAA

1

0 transposon

LTR

Idefix6634 GAGGAAUUUGAGCUGCGAUGACGCCGA

1

0 transposon

LTR

ninja-Dsim-like6635 AUCAAUCGCUGAAAGGGCACCGGGU

1

1 transposon

LTR

accord6636 GCAGUAAUUCCGGGGAGUCAGA

1

0 coding gene6637 ACCGUCAUUCCAGCGCAAGUUGCCC

10 transposon

invader4
1360
accord2
rRNA

LTR

DM88

rRNA

CG31641-RA¦stai
Unknown

RR50960
rRNA

LINE

G2
tRNA
alphagamma-element

1 ncRNArRNA

0 transposon

LTR

springer1

0 transposon

LINER1-element

1

0 ncRNArRNA
Su(Ste)

rRNA
LTR

LINE

G4

INE-1
CG6279-RA¦CG6279

Su(Ste)LINE

Helena0 coding gene

CG13255-RA¦CG13255

0 ncRNArRNA

1 transposon

LINE

Doc4
CG6230-RA¦CG6230

rRNA
LTR

HMS-Beagle

CG30425-RA¦RpL41

CG9660-RA¦toc
LTR

ninja-Dsim-like6638 UUCGAGUUUAACAAAGCGCCCUUUGG

10 transposon

LTR

flea

6639 CCCCGUACUCUGUGGUGACCGACA

1

1 transposon

LINEbaggins

6640 UUAACAGACAAGGGCCAGUAAAA

1

0 transposon

LTR

Idefix6641 AGGUGUUGUAAGUGGUUGAGCAGCUGCC

10 ncRNA

6642 UGUAUAGAUGAGGUAUAAGGUUGGC

10 transposonLow̲complexity

F-element

6643 UCCGACCGGGGGCCCGUGGACUGU

1 no match

6644 CCAUUCGAUUCAUGGUGUGACUACAA

1

0 transposon

LTR

springer

6645 ACGACGCGAGAGGUGAAAUUCUU

10 ncRNA

6646 GAUCCUCAACUGUGAGGCUCAA

1 no match

6647 UCCCGCAAUAUGACAAUCGCUCG

1

1 coding gene6648 GAAGAAGUUAUGGUUGGCGAGGUCGC

1

0 transposon

LTR

Idefix6649 AAAGCCGGGACAUCGAAUUGCUGAAA

1

1 transposon

LTR

micropia

6650 GCAAGAGACUCGAGUAGGGCGGGAC

1 no match

6651 AUGUUCAUCGUUAGACGGCUCGGGC

1 no match

6652 CCCAGAAACACAGUGUUUGACGCCAAGC

1

0 coding gene6653 AAAACGCGAAUGGCAUCCGGAUGA

1

0 transposon

6654 CGCAAAAGUUGACCGAACUUGAUUA

10 ncRNA

6655 AAGGCGGGGACUAUUUACUUAGUU

12 transposon

LINE

Cr1a

6656 UGGACUCGCUGACUGCGCACAGUUU

12 transposon

LTR

micropia6657 CCCAUCGCUGAUCGAGAUGAUGCGCUUC

1

0 coding gene

CG15286-RA¦CG15286

6658 GAACCACUUUCAUGCUUGGGAUUGUGAA

1

0 ncRNArRNA

6659 CUUACAUUCAGUGGCAAGGUUAACC

1 no match

6660 AGGAGCAUAUAAUGCCCCGUAGGUUGUCCC

1 no match

6661 CCGAACUUGAGACCGCCCCUGGACGACA

1

1 Su(Ste)

Su(Ste)6662 AACUGAAUAAAACGAAAAUGGAUGACAC

1 no match

6663 GUUUUCAAGAAAAGAUGCCCGAACGACU

16664 AGCUCUUGAUCGAAGCCCCGGU

1 no match

6665 CAGCUGCCAUACUGCGAUCCACUG

10 ncRNA

6666 GCGGUUAUUAGUGGAUUCAGCCUU

1

0 transposon

6667 UGUUUCAUCGUUAGACGGCUCGUGCG

1

1 AT-chX

6668 UACAAUACAACGCUGACGACUAAAA

1

0 no annotation

6669 GAGAAAUUCAACGGUGAUCCAGGC

10 transposon

LTR

McClintock

6670 AGCCGACUUAGAACUGGUGCGGACC

1 no match

6671 UCUUAGAACAACUUAGACGACCAGA

1

0 transposon

LTR

opus

6672 UCCGAAGACAAGUAUACCGUGGCAC

1

0 transposon

LTR

micropia6673 UGAAACAAGAAGAGGACGACGAUCAC

1

1 transposonLow̲complexity

F-element

6674 UGCUCUCGAAUGCAUGCCCGAUAU

1

1 transposon

LINE

R1

6675 AUCGAUGACGAGCUACGAAGGGA

1

0 transposon

LTR

ninja-Dsim-like6676 UUCGAUUCCGGAGAGGGAGCCUGAGAA

1

0 ncRNA

6677 UCCGAGAACAAACGAUACUGUUCGGC

1

1 transposon

6678 GACUUGAUCUCGGUGUUCAGUACAC

1

0 repeat6679 CACGUCCGAACAUAAGUGUGUAAGA

1

1 ncRNA

6680 CAACCAAAGAGGUAUUGCACUAGC

1

0 transposon

6681 AUGCCCUGAAGACCAUUACUCGUC

1

0 coding gene6682 CCGUACUUUACUUUUGCAACAAAACGA

1

0 transposon

DNA6683 AGUCACGAUGCUUAGCGUCCGUCGC

1

1 transposon

LTR

GATE

6684 AACGCUUAUACAUAAGCCGAUCGCGGAG

1

0 transposon

DNA

NOF

6685 UGCACCGAAAUAUAUGCGAGGAGA

1 no match

6686 CACGAAACUGGAACGGGAUUAAAAUC

16687 GCACUCGCCGAAUCCCGGGGCCGAGGG

1 no match

6688 CACUGUGUCUCCCUCUUUUGGUCGCGG

1

LTR

DM88

6689 GCGGAGGCGGGCGGCGGGGGGGUU

1 no match

6690 AAACCAAAGCUUUUGGCUCCGGGGGA

1 no match

6691 UCAUUGAGCGAACCCGGGGAACUGAAA

1 no match

6692 ACCACCCUGAACGCGCCCGACCUCGU

1 no match

6693 GUGGCAUGUUUCCGGAUUCCCGCC

10 ncRNA

6694 UGCCGAUGACAACGCCUUCCUAGCC

1

1 transposon

LINE

G

6695 AAGAUGAGAUCUGCCUGGGGCCUUGA

1 no match

6696 ACUCGCCGAAUCCCGGGGGCCGGGGGA

1 no match

6697 CCAUACUUAGACUAGGAUACUACCCA

1

0 transposon

LINE

G2

6698 AACCUGAUUGAUAGCGUAGACGACG

1

1 transposon

LINE

Rt1a

6699 CACCCAGAAGGCCCGGGUUCGAUUCCC

10 ncRNA

tRNA

6700 UCGAAGGGAUAGGGUCGGUUCGUCCGG

1 no match

6701 AGUCGUGGCCGAGCGGUUAAGGC

10 ncRNA

tRNA

6702 CGCCCCUGGACGACCCACGAUUUAACA

1 no match

6703 CGAACCAGAGGCUGGGUACAUCG

16704 CCGUUCAAAAUGUUCAUGCAGGAGA

1 no match

6705 GAACCAGGUGGCGCUGAACCCGC

1

2 coding gene6706 CAUUCAUAACCGAGCGACUGUUCUA

1

1 transposon

LTR

GATE

6707 CGCCCGGGCGUCCUCCAGCGAUGAAAA

1

0 transposon

LINER1-element

6708 UACAUCGAAAAGCGAGUUGACGUGUUU

12 transposon

LTR

Max

6709 CAAACCAAUCCCAGCCAAACCCGUCAAA

1

0 transposon

LINE

G2

6710 UCCUUCAUGAACGAACCGUACCGAG

1

0 no annotation

6711 UUCAAGGUUACCCCAGGAUGCUGC

1

1 repeat6712 UCCGAUUUCAAGUACAAGACGAACCGA

1

0 repeat6713 UACUUCGAGACUUUUUCACCCGUGUG

1

0 transposon

LTR

6714 AAACUGGAUAAACGAAAUGGAUGACAC

1

1 transposon

LTR

6715 AGAUGGUGCGAGAACCCAGAGUAAU

1

0 coding gene6716 GUCGCAGACGACCGGUACUGCAUCGACG

1 no match

6717 CAUAGUCAUGCGAGGCGAACCGGGUGA

1 no match

6718 CCAGACGUAAUACUCCUCUACCCGGA

1

1 transposon

LTR

HMS-Beagle

6719 UCUGCCCGAUUAGAAGAAUGGCCCGU

1

1 transposon

LINE

RR49783

6720 GUGGAGCCGGGCGUGGAAUGUGAGUG

1 no match

0 transposon

rRNA

rRNA
CG40609-RA¦CG40609

CG18743-RA¦Hsp70Ab
LTR

flea
rRNA

LINE

RR49783rRNA

LTR

IdefixAT-chX-B

rRNA
LINE

G2
LSU-rRNA̲Dme
rRNA

LINE

X
pseudogene
1360

0 no annotation
0 transposonalphagamma-element

0 no annotation
CG4264-RA¦Hsc70-4

trf
RSP
297
invader4
CG11719-RA¦Mst98Ca

6721 ACGGACCAAUGGCACAAUACUUGU

16722 ACAUUCAGUAACCGAGCGACUGUUCA

1 no match

0 repeat

LSU-rRNA̲Dme

6723 AUAAGGAUGAUGAUACCGACUAA

1

0 no annotation

6724 CAGUACGAUAAUAUUUCCCGCGACAAG

1

0 transposon

6725 ACACGAGAAAACUUACCAGGUCCGAA

1

1 ncRNA

6726 AACCAUUCGUAGACGACCUGCUU

1 no match

6727 GGUAGCCAAAUGCCUCGUCAUC

1

0 ncRNA

6728 UAACAAGAUGUAUACGAUGCGGC

12 transposon

DNA6729 GCAACCGAGGGAUCUCAUUACCCGA

1

0 transposon

Simple̲repeat

6730 UCAGCUAAAAUCCGAGAUGGCUACCC

1

0 coding gene6731 AAAUCGCUCGAUGUCGUGAGGUGACC

1

1 no annotation

6732 ACGUAAAACAAUUCAAGAUCUGGCCGGC

1

1 transposon

LTR

blood

6733 UGCGAAAGUAUAAGAUGUCCAGCGA

1

0 transposon

LINE

Rt1b

6734 CUUAUCAACAACAAACCCGGGGACGAGC

1

1 transposon

LINE

G6

6735 AGCGUCUAAAAAGAGAUGAGGCCUUGA

1

0 transposon

LTR

GATE

6736 AGAGAGAAGGCUCACCCGACGAGA

1

1 no annotation

6737 AAAAACCUGAAAGAAUGAUCCUGAGUCG

1 no match

6738 UGCUCUCGAAUGUAUGCCCCGAUAUACC

1 no match

6739 GACGCGAUGUGAUUUCUGCCCAGUGCGC

1 no match

6740 UGUCAAUUCAACGAGGACCGCUAUGAGA

1

0 transposon

LTR

flea

6741 CGGCAACUUCAUCGAUCUUAAACCGCC

1

0 coding gene6742 UCGCGAGUUCGAAUCCCGCCACGC

1 no match

6743 UACAAGCAAGACCAUCACACCCGACGC

1

1 transposon

LTR

gypsy126744 GAUGCUCGAAGACACCACGGUGAA

1

1 transposon

LTR

ninja-Dsim-like6745 CCCGAAAAAUCCCCCGGCUACGACCU

1

2 transposon

LINE

FW

6746 UAGCGAUCCGCGUCCCCAGUUCACC

1

1 transposon

LINER1-element6747 UAAGACUUAAAGAUGAUGAACCCAC

1

1 transposon

DNA

NOF

6748 CUGGACGAGGCCGACAAGAACUCCGAU

1

2 coding gene

CG31359-RA¦Hsp70Bb

6749 AGAAGGGCAAAAGCUCGCUUGAUCU

1 no match

6750 CAACGGGUAACGGGGAAUAAGGGUUCG

1

1 ncRNArRNA

6751 GAUUAUGCCUGAACGCCUCUAAGGU

10 ncRNArRNA

6752 UCCGUCGUUAAUCCAUUCAUGCGCAU

1

0 no annotation

6753 UAAGAGGGACGGCCGGGGGCAUUC

1 no match

6754 GUCGUCGAAGGUUUCCCAAUGGA

1

0 transposon

LTR

ninja-Dsim-like6755 CACGAUGAUCGAUGACGAGCUACGA

1

0 transposon

LTR

ninja-Dsim-like6756 CUGGCUUAUAACCGUUCACUCUCCAA

1

0 transposon

LINE

Doc3

6757 AAAACCUGAAGAUGAUCCUGAGUCU

1

1 transposon

LINE

Helena6758 GCUCGUAGCGAUUCUGACGUGCAAA

1 no match

6759 AGUUAACUAUCCCAAAGGCAUCACGCG

1

0 no annotation

6760 AACAACAACAACCAGAGCAAAGCAAG

1

0 transposon

Unknown

RR50960

6761 CACACUGGUACUGAGACACGGCC

1 no match

6762 AACGAGCGCAACCCUUGUCCUUAGUU

1 no match

6763 ACGUCGGCCAAGCUCCUGCAGCAU

1 no match

6764 GCACACAGAGGAGUAGCAGAUGAGAGCA

1 no match

6765 AGACACGCAAGAGCAGCUCCAGC

1

2 transposon

LINE

G6

6766 CCAAACUUAAACAAGACACUAGUCCGA

1

0 no annotation

6767 CUGGAGCCACAGUAGUAUUUACAUUU

1 no match

6768 CAAACAACAACAAAAGACGCAAGCGGGA

1

0 transposon

LTR

Rt1c

6769 GAGGAAUUUGAGCUGCGUUGACGCCGAA

1

0 transposon

LTR

ninja-Dsim-like

6770 UGUCAAUUCAACGAGGACCGCUAUG

1

0 transposon

LTR

flea

6771 GCCGAAGUCAUUGUGCGACAGAGUG

1

1 transposon

LINE

X

6772 AAGCAAUUAUCCGAUACCGCUUA

12 transposon

LTR

flea

6773 CACAGGUACGGGGCUUACUGAA

1 no match

6774 UAGUUCAGUCUGAGAAGGGAGGAGUU

1

0 no annotation

6775 UGAGGGGAUCCUCUAA

1

2 coding gene6776 GUCACCAUACCCGACACUUACCCCAU

1

0 transposon

LTR

opus

6777 ACAUCAAAGACCACAUGCACUUACAU

1

0 transposon

LTR

Stalker26778 AUUGGGUGUAGCUACUUUUAUGGCU

10 ncRNArRNA

6779 AUACCGGAUGAUGUCGUAAGACCAAA

1 no match

6780 GUUCCCGAUGUUUCUCGUACCCAAAA

1 no match

6781 AAAAAGCGCGCUUGACUGCGAGACAGAC

1 no match

6782 CUCAGCGAUGUGUGGACCAAGUCAAC

1

1 Su(Ste)

Su(Ste)6783 ACCCUGAACGCUCCCGAUCUCGU

1 no match

6784 UGUUUCAUCGUUAGACGGCUGGGC

12 AT-chX

AT-chX-B

6785 GUUUCGCAAAAGUUGACCGAACUUGAU

10 ncRNA

rRNA

6786 GCACACAGAGGAGAGCAGAUUGAGAGCA

1 no match

6787 UUCGUGGAGUGAUUUGUCUGGUUAA

1

0 ncRNArRNA

6788 ACUCGAAUGUAACGUGCCCGAAUAUAACGGAGC

1 no match

6789 ACGGGCCUAGAGUUAUUCCCCUAGA

1

1 coding gene

CG40635-RA¦CG40635

6790 AAGCCCGUGGAGAUCGAGUGCCAGGA

1

0 coding gene6791 AAUGUAUGUGAAUACUCAGGCCGUUG

1

1 transposon

6792 UCGGGCGCGGUUAGUACUUAGA

10 ncRNA

6793 UUACCCUACUGAUGAUGUGUUGUU

1 no match

6794 CGCUAUAACAACGUCUUCGUGCCGCGA

16795 ACUCUCCGAAUCCCGGGGGCCGAGGGAGC

1 no match

6796 ACCACCCUGAACUCGCCCGAUCUCGUC

1 no match

6797 AGCAAGAGACUCGAGUAGGGCGGGA

1 no match

6798 AAACAUUCCAGAGUCCGAGUAAUA

1

0 transposon

LTR

Stalker4

6799 UAGAGUAGAAGAAGUCGAAAGCGG

1

0 transposonLINEaccord2

6800 AAACGAGAGAAGCAUUUUUGCCGCA

1

1 transposon

LTR

gypsy126801 UGAUCACGAGUUAGUCGGUCCUAAGUU

10 ncRNA

6802 AAGAGCGCGUGAAACCGUUAAGAGGU

1 no match

6803 CAAGACAAUGACACUAAUGCAACCAAA

1

LTR

gypsy12
rRNA
rRNA
1360
I
CG12047-RA¦mud

CG18628-RA¦CG18628

CG4584-RA¦dUTPase

CG13891-RA¦CG13891
LTR

blood
5SrRNA

0 no annotation

0 transposon

rRNA
LINE

G2

6804 UUCGAGAACAAACGCUACUGUUCGGCC

16805 ACGUGGGGGUCGCAGGUUCAAAUCCU

1 no match

0 transposon

LINE

G2

6806 UAGCUAGAGAUAGUUUUCGUCGAGC

16807 AAGGCCGAGAGCUGAUGACGAGUUA

1 no match

0 transposon

LINE

Cr1a

6808 AAGAGGGCGUGAAACCGUUAAUAGGU

1 no match

6809 AUCAAUCGCUGAUGAGACACCGGGAU
6810 ACCGAUAUAAUUCUAACUGAGACCCCCC

1

1 transposon

LTR

accord1

2 transposon

LTR

G4

6811 CUCAUCCAGCAUGUGGAACGGUU

10 coding gene

6812 UGGAGUCCUGUUGAUCAUUUGCCC

10 transposon

LINE

Cr1a

6813 AAGAGUGAGAGCGAAACGUGGAGUA

1

1 transposon

LINE

Cr1a

6814 AACUGAAUAAACGAAAUGGAUGUAC

1 no match

6815 CGACUUUCCGGCGGUGCCCGGCUCCAG

1

0 coding gene6816 CGAAUACGAAGAACAGGCAGAAUC

1

0 transposon

6817 AUCCGGAGAUGGGGUCUUAUGGCUGGA

1 no match

6818 UAGAGAGUGAUGCCGAGUAUAAAAUA

1

2 repeat6819 UGAGACUACAAACGGAUUGCGAACC

1

1 no annotation

6820 CAAUGAGUUACGCGAAUGUAACGAGUA

1

0 transposon

6821 ACAUUCACCUGGGACCGAGGUUCGAAC

1

0 coding gene6822 UCCGGACAAACACACAAGACCCGAU

1

0 transposon

6823 AGGACACUAGCUUCUUAAAUGGA

1

0 ncRNA

6824 CAAGAAGGCCGACUACUGCAACGAU

1

0 coding gene6825 CACUGUUCAUACAAUUGAGGCUGGA

1

0 transposon

6826 GUUCACGGAGAAGAUUGCGCCGGAGC

1

1 coding gene

CG11719-RA¦Mst98Ca

6827 ACUCGAAUCAACAAAUUGCGCCGAUA

1

0 coding gene

CG41545-RA¦CG41545

6828 AAUUCCAUCGAAAAGACAUUGGCCA

1

2 coding gene

CG41322-RA¦CG41322

6829 AAUUGGCCCAAACGGAUUUCCCUAU

1

1 repeat

SAR̲DM

6830 ACGAGCGCAACCCUUGUCCUUAGU

1 no match

6831 CAAGCAUUCGACAAAGUCUGGCUCGUA

16832 ACUCGCCGAGUCCCGGGGCCGAGGGAG

1 no match

6833 AAGACCAAUAACAUUUUAAGGAUA
6834 CGCGUGGGUUCGUAUCCCAUCCUCGU
6835 ACGGCCAAUGGCACAAUACUUGU

1 no match

6836 GAUGCGAGAGGUCCCGGGUUCAUAUC
6837 AAAUGUGAUUUCUGCCCAGUGCUCUGAA

CG1609-RA¦Gcn2

CG9078-RA¦ifc
LTR

gypsy12
trf

LTR

IdefixCG2304-RA¦Trc8

LTR

opus
rRNA
CG12218-RA¦mei-P26

Low̲complexity

F-element

2 transposonLow̲complexity

1

0 transposon

LTR

1

1 ncRNAtRNA

12 ncRNAtRNA

1

1 ncRNArRNA

6838 GGCAGCAGGCGCGUAAAUUACCCACU

1

0 ncRNArRNA

6839 GAUAACGAACGAGACCUUAACCUACU

1 no match

6840 GCUACUGUCUUACCAUCAUCGACCGC

16841 UCUGGUGGCGAUAGCGAAGAGGACACAC

1 no match

6842 AUGAGAUUGAGCAAUAACAGGUC

16843 AGAGGGUGAGAAUCCCGUGUGGCGAGGA

1 no match

6844 GGAACGUGUAUCAUUUCCUAGCCAUUAU

1

0 repeat6845 AAGGAAAUGAUUGUUGAGUGCUU

10 transposon

6846 CAGAGAUCCGUGUGGCCUAUCGCUAU

1

0 coding gene6847 AUGACCUAAACACGAUUAUAGAUAUAA

1

0 transposon

LTR

Idefix6848 AGCACCCUGAACGCGCCCGAUCUCGU

1 no match

6849 CGCUCACAGACUACCUAAAAGGCGCAU

1

1 transposon

LINE

Doc4

6850 AAGUCAGAUAGCGUUAGUUGCGGGA

1

0 transposon

LTR

springer

6851 UGCUCUCGAGUGUAUGCCCGAUAUA

1

1 transposon

LINER1-element

6852 CAAAGUGUAAAGGCCCAUAUGUG

1

0 transposon

LTR

flea

6853 GACCUCAAUAAGCUGCCGGACCUGA

1

0 transposon

LINE

F

6854 CAGCAUUCGAUAGAGUAUGGCUGGA

1

1 transposon

LINE

Doc3

6855 AAGUCAAAGACCUUGUUAACGAAGCC

1

0 transposon

LTR

HMS-Beagle

6856 AAACAUGAUAUGUCCCUAGCGUAAGA

1

1 transposon

LINE

Cr1a

6857 AACGGCGAGUGAAGCGGCAAAAGCUC

1 no match

6858 ACUACUUUCAGGACACGUUCAACCAG

16859 ACCCUGAAGCGCCCGAUCUCGU

1 no match

6860 UACAGACUUAGCCCCGAAGAGAGAGA

1

0 transposon

LTR

micropia

6861 UAGGAGUUCACCGCCACGACGA

1

0 transposon

LTR

GATE

6862 UAUGACCCUUACAAAAAUGCGAA

1 no match

6863 AGCGAAAUGACUCUGUCCCGAUUCAAU

1

1 transposon

LINER1-element

6864 UUGUGGGCCGGUACUAUUACUUUG

10 ncRNA

6865 GAUCCUCAACUGUGAGGGAUCCUCAA

1 no match

6866 GCGCCGGGCCGUACCCAUAUCCGC

1 no match

6867 AGUACUGGAUGACGUCAUAUUUUG

1 no match

6868 AUAAAACAUACGCCCGGUCGCGCC

1

0 transposon

6869 UUCAGCGAGAUAGUGGACGUGAUCCUGA

1

1 repeat

6870 AUGAGAACGAUGACGAUCCCACGGCU

10 transposon

LTR

ninja-Dsim-like

6871 GGAAAGGCGAAAAGAACCCCGGG

1 no match

6872 CUGCCGAACGUAGUCUCUCGAGAGC

1

0 transposon

LTR

invader1

6873 AAAACCUGAAGAUGAUCCUGAGUCC

1

1 transposon

LINE

Helena6874 CAGAGAGAAGACUCACCCGACGAGA

1

0 no annotation

6875 CGAGAGAAGACUUUUCACCCGAUGAGA

1 no match

6876 AAGAGGGACGGCCGGGGGCAUCG

1 no match

6877 ACCGGAAACAUUAGUCGAGGCGUAAA

1

2 transposon

LINE

Rt1b

6878 ACGAGAAACUUUAUCCCAGUCGGA

1

1 no annotation

6879 UCCACGGCCGACCGAGAAAUUCCC

1 no match

6880 CUUACCUUCAACAGCUAAGGGACCA

1

LINE

S

6881 UGUGUUUCCCCGGCGACUAUACAGCC

1 no match

6882 GAUGUCGGCUCUUCCUAUCAUUGUGAA

16883 CUGGUUAAUCCGAUAACGAACGAGA

1 no match

6884 GAUGGAAGACCGAAACAGUUCUGA

16885 AGGUGCAGGUGGACUACAAGGG

1 no match

6886 CACCGACGAAUAUCUGACAAUUGAUGA

1

0 transposon

LINE

0 ncRNA

297

Doc4
rRNA
LSU-rRNA̲Dme

DNA

1360
CG32626-RA¦CG32626

0 Su(Ste)0 transposon

F-element

Su(Ste)

rRNA

LTR

GATE
trf

0 ncRNArRNA

0 ncRNArRNA

0 transposon

LTR

Dm88

6887 CAGGGCUGCAAUUGUUUCCCGUGG

1

0 transposon

6888 GUGAAGAAAUUCAAGUAAGCGCGG

10 ncRNALINE

6889 ACAUUCGAGACCCAACGGCACGUGAC

1

0 transposon

LINE

Rt1b

6890 GCCUAUACGAGCCGGAGUACCUCA

1

0 transposon

LINE

G2

6891 ACACAAUCGAUCCCGAAAUUUUGA

1

0 transposon

LTR

6892 CUAGCGGACAACCUAGCCAGGUAA

1

0 transposon

LINEbaggins

6893 UGCUCUCGAAUGUAUGCCCGAUACA

1

1 transposon

LINER1-element

6894 UUCCGUAAGUAGUGGCGAGCGAACGCGGAUU

1 no match

6895 CGGAAGACCCUCUCCCCGGCGCC

1 no match

6896 UUCAACCGGACGGGCCUAGGGAACUU

1 no match

6897 AACUAGAAUAAACGAAAUGGAUGACA

1 no match

6898 ACGAGGACGACCAAGAGAGCUCUGA

1

0 transposon

LINE

G6

6899 UCUCAUCGUCGUAGAACAAGCCCGGGGU

12 Su(Ste)

6900 UCCGAUCUCCGACUAGGCCCGCGU

10 transposon

LTR

GATE

6901 AUCAAUCGCUGAAAAGGCACCGGGAC

1

0 transposon

LTR

accord6902 GCAAACCAAUCCCAACCAAACCCGU

1

0 transposon

LINE

G2

6903 AGCUACCAUGCUCCGCUAUACCGACCG

1

0 coding gene6904 GACAGAUUGAUAGCUCUUUCUCGA

10 ncRNA

6905 AUCAUUCAAAGCCAGCUGGAUGCCC

10 transposon

6906 GGAGCAAACGCAGACGGAGAUGU

1

0 coding gene

6907 GUGCGUAUUGGGUUGACACGACA

1

0 transposon

LINE

Cr1a

6908 UCCGAAAUGAACGUCUUCAUUGGACCC

1

1 transposon

LTR

gypsy86909 CAAGCUGAUCGAGCGCAACUGCCGU

1

1 coding gene6910 UGUUGACAAAAAUGAGGCUGACCAA

1

0 transposon

LTR

roo

6911 UCUAGAGGACGAUAUAUUGACAUAA

1

1 transposonDNAtransib2

6912 AACCCAGCCGCAGACGUCAGUAAAUC

1

0 coding gene

6913 AUCUGGGAGACAGACGGCGGGUGC

1 no match

6914 AUGAAAGGUUCGUCCACCCGGGGGCGCCA

1 no match

6915 UCCGUUCCCGCUAGAGACUACC

1 no match

6916 AAUUCCGAUAACGAACGAGACUCUG

12 ncRNA

6917 AAAGUUCUGAGAACCAUCACUGGGGC

11 transposon

LINE

F

6918 AAUCGAUGUGUUACUGCUCAGCGUAU

1

2 transposon

LINE

X

6919 UUGAUCACGAGUUAGUCGGUCCUAAGUU

10 ncRNA

6920 UCCCGUAAACCGCCAUCAGCAACAC

1

0 transposon

6921 AUACAUGCCGACGGGCGCUGACCCCCCU

1 no match

6922 GCACUCGCCGAAUCCCGGGGCCGAGGGAGC

1 no match

6923 AUAGCGUACCGGAGUGGACUGCCGU

10 ncRNA

6924 UGGGAUUGUACAAUUUCAAUACGGGA

1

0 transposon

LTR

diver26925 UAUAGGCUCUCUCAGUCGCUUCCCGGGA

1 no match

6926 AACAGAAGAAAGAGACCGCAUUACCCA

1

1 transposon

LTR

Idefix6927 ACUCUGAACGCGCCUGAUCUCGU

1 no match

6928 UCCUCGAUAGUAUAGUGGUCAGUAUCCC

16929 AACCGCAGCAGGUCUCCAAGGUGAAC

1 no match

6930 CCGACACUUACCCCAUCCCUGAUA

16931 GCGGAAAGACGGAAAGACCCCAUG

1 no match

6932 AGUGGCAACUCAUUCCUGCCCGAGAAG

1

0 coding gene6933 CGAGCUCGAGGAAUACGGCCUUC

1

1 transposon6934 CAACCAGAGAUCUGGAGGGCCCA

1

1 no annotation

6935 UGCUCUCGAAUAUGCCCGAUAU

1 no match

6936 AAGUACGAAACAUGCUCUGACCUAA

1

0 transposon

6937 GAACUGAGAACCGUUGGACCAUG

1

0 coding gene6938 ACUGACAAUGACAGGGCAAUUUAUAG

1

0 transposon

LTR

gypsy46939 AAAACCAUUUAUCCUGCAGUGUGAU

1

1 transposon

LINE

Circe

6940 AGAGUACUUCAGCCAGACACUGGAC

1

1 Su(Ste)

Su(Ste)6941 UCCUAGGCAGAGACGGCGUCGCUCGAGU

1 no match

6942 UCACAUGAACUUGGAAUUCCCAGUAAGUU

1

1 ncRNArRNA

6943 GACUGCAGAUCGAGAGGUCCCCCGGUU

1 no match

6944 AGAAGGCCCAAGUUGUGUAUGCAUAU

1

1 no annotation

6945 GCUCGACGGGCUCAAGAUGUGUGACG

1

0 coding gene6946 GGGUUCCGGGGGGAGUGUGGUUGC

1 no match

6947 UGGGGAAACCCACUCAUCCUGAUUAUC

1 no match

6948 AAUCCCCCAGGACUUGAUCGCAUCGA

1

2 transposon

LINE

G2

6949 UAAUAGUGGGUCCGAGGAAUCAAUAGC

1

0 transposonDNAtransib2

6950 AAUGGGCGAAGCUACCAUCUGUGGGAU

1 no match

6951 UUGUAAACAAAUCGUAAAGCCUGACC

1

0 transposon

LTR

6952 CCCCAGGAGGACAACCAUCUUCUCUACC

1 no match

6953 ACAACCAAGACGUUUGGCAGAGUGUGA

1

0 transposon

DNA6954 CAAAGAUUAAGCCAUGCAUGUCUAAG

1

0 ncRNA

6955 GAAGCCAAUGAAAAACAGCCUGCCGA

1

0 transposon6956 ACACGUUCAACCAGAUGGGCCUG

1

0 Su(Ste)6957 UCCAAUUCCAAGGACACUCAAAGA

1

0 transposon

LTR

HMS-Beagle

6958 AAUUUCGGAGCACAAUUUGGCGA

1

0 transposon

LTR

ninja-Dsim-like6959 ACUUGAGACCGCCCCUGGACGACCCA

10 Su(Ste)

6960 AGGGAAAGGAGCCGAGGCGUCGUC

1

1 transposon

LTR

ninja-Dsim-like6961 UCUCCCCGCGGAAAGACGGAAAGACCCC

1 no match

6962 CGCCCCUGGACAACCCACGUCCCUAU

1 no match

6963 AAAACCUAGAACAUGAUCCUGAGUCG

1 no match

6964 GACAGUCCAAACCCCGUAACUCGAACA

1

0 transposon

LTR

GATE

6965 ACCGAACGUAGUCUCUCGAGAGCGA

1

1 transposon

LTR

invader1

6966 CAGUCUGAGAAGGGAGGAGUUACCGCC

1

0 no annotation

6967 CGGAUGUGCUGACCCCUGCGAUUUCCC

1 no match

6968 AACCCUGAUGGAAGACCGAAACA

16969 UAACCAAUACUAAUUGCCCGUGAGGC

1 no matchrRNA

0 ncRNA

17.6

Su(Ste)CG4836-RA¦CG4836
rRNA
LINE

G
CG15307-RA¦CG15307

CG18743-RA¦Hsp70Ab

CG1484-RA¦fliI

rRNA

rRNA
Low̲complexity

F-element

7SLRNA-RA

1 ncRNA
1 transposon

Fw2

tRNA
LTR

opus
CG4068-RA¦CG4068

LTR

ninja-Dsim-like

LTR

Rt1c
CG17376-RA¦CG17376

CG17377-RA¦CG17377

17.6
transib4
rRNA

LINE

G2
Su(Ste)Su(Ste)rRNA

6970 AACGCAGACAAAUCCUUCCAAACCA

16971 ACUCGCCGAAUCCCGGGGGCCGAGGGAGCG

1 no match

1 transposon

LINE

G

6972 ACUGGGGCGGUACACCUGUCACUGAC

1 no match

6973 CGAGAGCGAGAGAUAUUCCCGUUG

1 no match

6974 CGCUAAACACACAAGAUUGCCACC
6975 ACAUUCAUAACCGAGCGACUGUUCACC

1

2 transposon

LINE

F

1

2 transposon

LTR

GATE

6976 CAGUACGUGAAACUGCUUAGAGGU

10 ncRNArRNA

6977 AAUCGCUCGAUGUCGUAAGGUGAC

1

0 coding gene

CG40609-RA¦CG40609

6978 GUCGGCGCGAGCCCUGGGAGGAGUU

1 no match

6979 AUGAUAUGCACCGAAAGUAUAUGAGA

1

0 Su(Ste)

Su(Ste)6980 CGCCGGAAACGAGCCCAGGGAUCAGGCCA

10 coding gene6981 AGGAAUACAACUGCGAACUCAUC

1

0 transposon

LTR

opus

6982 UAAGCCCCGUACUCUGUGGUGACC

1

0 transposon

LINEbaggins

6983 ACCCUGAACGCGCCCGAUUUCGU

1 no match

6984 AUUGUGGGCCGGUACUAUUACUUUU

1

1 ncRNArRNA

6985 AAUAAUGAGAUUGAGCAAUAACAGGUC

10 ncRNA

rRNA

6986 GUCCCAAGGCCAGCUCAGUGCGGACAGA

1

0 ncRNArRNA

6987 GUGUACGCGACUUUUCUAUUUAAGU

1

0 coding gene

CG10497-RA¦Sdc

6988 GCCACCGAGAUCGUGCGAUUUGACCU

1

0 no annotation

6989 CCCAGCUCGGGAGGUAGUACGACGUAA

1 no match

6990 CUGACAAUGACAGGGCACUUUAUAG

16991 AAAUCAUGCCGACGGGCGCUGACCCCCCC

1 no match

6992 UAAACCGUCAUCCCAGCGCAAGUUGCCC
6993 GACGAGACUUUGGGUGUGCUUAUGUCG30460-RA¦CG30460

0 transposon

LTR

Burdock

1

1 transposon

LTR

ninja-Dsim-like

1

0 coding gene6994 AGCAGCAACCCAACGUCGAUGUGCGACC

10 coding gene6995 CCCGAUAUUAAUCUAUCCUGAUUU

1

0 transposon

LTR

Idefix6996 UUAGAUAUGCUAGCAGACUGGAGA

1

1 transposon

LINE

G2

6997 AGUUACGAGACAAAUUGGGUUUGCUGC

1

0 transposon

LINE

Cr1a

6998 AGUACGAUCCGUCUGCAAACUUC

1

0 transposon

LTR

opus

6999 UGUUCAUCGUUAGACGGCUCGGGUA

1 no match

7000 UCAACUGUGAGGGGACCUCAA

1 no match

7001 ACGAGCGCACGUGUUAGGACCCGUAAA

1 no match

7002 AAACCAAGCUUUUGGGCUCCGGGG

12 ncRNA

7003 UGAGACUACAAACGGAUUCCGGACCG

1

1 no annotation

7004 CUGACAUUAAUGAAGUGUUGGCC

10 transposon

7005 CAGCUGCCAUACUCCGAUCCACUGAAG

1

1 ncRNA

7006 AAGGACCAAUUGGAGGGCAAGUCUGG

10 ncRNA

7007 AAGACCACGAGCGGUGUAGAACGG

1

0 transposon

7008 ACCCUCUGAUGAUGUGUUGUUGC

1 no match

7009 UAUACCUAUACAUUACCGCUAAA

17010 CUCCAUCUCAGAGCGUAGAAUUUGGAC

1 no match

7011 AACAACAACAGUGCAGACGGCGCCCGC

1

1 transposon

DNA

H

7012 UCGAGAAGAAGAUGAAGCGCAACAAGC

1

0 transposon

LTR

ninja-Dsim-like

7013 GCGAGCGCACGUGUUAGGACCCGAAA

1 no match

7014 CAUGUCAUAACAACUAAACCCGAAGAC

1

0 transposon

LTR

Quasimodo

7015 AGACGAUGACGAUCCCACGGCUGGAGC

1

2 transposon

LTR

ninja-Dsim-like

7016 AACCGGAGGAAGGUGGGGAUGACGUC

1 no match

7017 AGGGAAAUUGAGUGGCAAGAGUGA

1

0 transposon

LTR

micropia7018 GUUCGGACAUCAGUUGGGAUCGCG

1

0 coding gene7019 UGGACUCGUUGACUGCGCACAGCU

1

0 transposon

7020 AUGAAUGAUGGACUGAAAUGG

1 no match

7021 CGCAACUUGCUGAACCGCACAAUC

1

0 coding gene7022 AAACUACCCUGACCCUUGUCCCGCAG

1

1 coding gene7023 AAUACAGAUACCCACUUUCUUUGGUGA

1

0 transposon

LINE

Rt1b

7024 ACUUGCCGAAUCCCGGGGGCCGAGGGAG

1 no match

7025 CCCUCAGAUUUGCUGGCCCUCACAC

1

0 transposon

LTR

Max

7026 ACCCUGAACGCGCCCGAUCUCGGUC

1 no match

7027 CAUCCAGUUAACUUUGCACAUCAAGCA

1

0 coding gene7028 UUCAACCGGACGGGCCUAGAGUUC

1

0 no annotation

7029 CCGAGCAAGACAUUGAUCACUUUGC

10 transposon

LINE

Doc3

7030 CGAGCGACCGGGACCAGGCCAGU

1 no match

7031 UUAACAACGAUGAUGAUUCUGGCCC

10 transposon

LTR

Max

7032 AAUACAAACAGAAUUCCCGAAUGAGAA

1

1 transposon

LINE

Cr1a

7033 CAACCGAUAUGCUAUCUUGGCUGAU

1

1 transposon

LINE

Doc

7034 UUAACAAAGACCCAAGUGCUGAAGUGC

1

0 no annotation

7035 AAACCUAGAAGAUGAUCCUGAGUCGCA

1 no match

7036 UUCUAGAACGAAAGCGAGGACGA

1 no match

7037 CUGUCAGGUACCCCGUUCAGCCCUAGUG

1

LTR

HMS-Beagle

7038 CAGCCUGAGAGGUGAUGCGUAGCCG

1 no match

7039 AACCUAAACGAUGCCAGCUAGC

17040 AGGCGCGGGUAACCCGUUGAACCCCAUC

1 no match

7041 AAAAGGUGGAAAUGAAGAAAGUACA

1 no match

7042 UGCCGCCGGAACUGAUUGUGACCACAC
7043 CCUUAUGGGACAUGUGCUUUUAUUAGGC
7044 GGAUCAACUGUUGAGGGGAUCCUCAA

1 no match

7045 UAGUACAAUCUAUCAGACUGAGUU

17046 CGAGUAAUAUGAGCGCCAGAGU

1 no match

7047 UGGCUAUAGCGUCGGUGUCCCACCCG

1 no match

7048 ACCGACGACAUCCAGACCAAGGAGUA

17049 CUGACAUUACAUCAAAAUUUUUUUGA

1 no match

7050 GCCAAUUACAUUAGACGAGACGGCCCA

1

1 transposon

LTR

opus

7051 GGACAAAACAACAUCCCGGGAAAAUGAGC

1

2 transposon

LINEbaggins

7052 AUGGCUCGCUCAGUCGCUUCCCGGGA

1

1 ncRNA

CG5263-RA¦smg
CG3213-RA¦CG3213

rRNA
LTR

rRNA
rRNA
LTR

0 ncRNA

0 transposon

HMS-Beagle

HMS-BeaglerRNA

CG4825-RA¦CG4825
LTR

micropia
CG13391-RA¦Aats-ala
CG30497-RA¦CG30497

CG12717-RA¦CG12717

2 ncRNArRNA

1

0 coding gene

CG32628-RA¦CG32628

10 ncRNArRNA

0 transposonLINE

0 coding gene

Fw2

CG8565-RA¦CG8565

rRNA

7053 AUGCCAAUCACGCCGUUUGAACCCUGC

17054 UGGCAACAUGUCGAGCUCCCAGA

1 no match

0 transposon

Simple̲repeat

I7055 UCCUAGAAUCGACCGACCAGCUGUG
7056 CCCGGGCGUUCUAUAUAGUUAUGUAUUA

1

0 transposon

LTR

invader3

1

2 ncRNA

7057 AGCUGGGACUGAGGACUGCGACGUAA

1 no match

7058 AAUAAACAAACUGACCGACACCGUGA

1

0 transposon

LTR

invader37059 GACUAGACGAGACAACGACGGC

10 transposon

LINE

Rt1a

7060 AAAGAGAGUAAUUUUGGCCGUCA

1

0 transposon

LINE

Cr1a

7061 GAAUACGUUCCCGGGCCUUGUACACACC

1 no match

7062 CAAGCUAGACUAUGUAUCCCCCGGGU

1 no match

7063 UCCGGAGAUGGGGUCUUAUGGCUGGAA

1 no match

7064 ACGCAGGUGUCCUAAGGCGAGCUC

1 no match

7065 UGGGCCCGAACCCUUCUGGUGUUAUA

1 no match

7066 GAGUCCGUGGCAUUCAGGUUGGCUAAG

17067 GACCAGAGAGGGUGAUCGGCCACA

1 no match

7068 AAAGGAGUUUCGACGGAUACGAAUGC
7069 UGCCGGGGCGAGGAGGAGGACUA
7070 ACACAGAGGAGAGCAGAUAGAGCA

1 no match

7071 AUGCCGGGGCGAGGAGGAGGACUAGC
7072 AAGGACGUUAAUAAAGAUGCCGUGGUrRNA

0 ncRNA

7SLRNA-RA

1

0 coding gene

CG8280-RA¦Ef1alpha48D

1

0 Su(Ste)

Su(Ste)10 Su(Ste)

Su(Ste)1

2 coding gene7073 CACAAAGUUAUUCUUCUACCGAUGGA

1

0 transposon

LTR

Rt1c

7074 AAAUCGAGCAACUCCUCCACGUAAAA

1

1 transposonLow̲complexity

F-element

7075 CAUCCUAGAAUCGACCGACCAGCUA

1

0 transposon

LTR

flea

7076 GGGACAUGUGGCGUACGGAAGAC

1 no match

7077 AAGGGGUCUAACACGUGCGCGAGU

1 no match

7078 AACCACCCUGAACGCGCCCCGAUCUCGUC

1 no match

7079 UACCACAUCUAAGGAAGGCAGCAGGCGC

10 ncRNA

7080 CGCAAACCCAAAAUAACAAUGCAGGA

1

0 repeat7081 CAUCGAUGUACUACUGGUAUCAGA

1

0 transposon

LINE

G2

7082 AGGAUCAAUAGCCGAGUCGAACUGGCCA

1

0 transposon

LINE

INE-1

7083 GCCCCGGCUAGCUCAGUCGGUAGAGCAUGA

1

1 ncRNA

7084 GCAACAGAGAAAGAGGCGAGGCAG

10 coding gene7085 CAGAGUUAAAGGCGGCUUCUUUGU

10 transposon

LTR

7086 UCCGAAGAUAACGAGGAGCAGAGCG

1

1 transposon

LTR

7087 CCUGGGAAGUCCUCGUGUUGCACCUCU

1 no match

7088 GCCACCCUGAACGCGCCCGAUCUCGU

1 no match

7089 AGCACGGGAGACACACGGGGGGGUGCU

1 no match

7090 ACCCUGAACGCGCCCGAUCU

1 no match

7091 GACUUCCGAGAAAGCCCGCAGAAUCC

1

2 transposon

LTR

7092 AGCUCUCGAGGCUCAGUGCAGGUGGCG

10 coding gene7093 AAAGCACCGUUUCCCGUCCGAUC

1 no match

7094 UGUGUUUGUAUUGCGAGUAGACU

1

1 transposon

LTR

invader1

7095 UUGUGAGUUAUCCGUCUAGGUGAG

1

0 transposon

LTR

micropia7096 UCCAAGGAAAGAAGAUAUCGCAAAGGA

1

0 transposon

LINE

G2

7097 CUGGGUAGCUAUGUCUGGAACGGA

1 no match

7098 AGGUGUGUGAGGCGAACCAGGGGAAC

1 no match

7099 AAAACCUGAAGAUGAUCCUGAGUCGCUA

12 transposon

LINE

Helena7100 GAUACCGUUAAGCGACUAUUUGUAGG

1

0 transposonLow̲complexity

F-element

7101 UGUGCUAGAAGACGAUUUUCGGGUU

1

1 transposon

DNA7102 ACAAAAUGUAUUCCGACUAAAUCCC

1

1 transposon

LINE

Doc

7103 GGUAACCCAUGCAGCCGAGCGGUCC

1 no match

7104 AGGAGACGUUAACUCGAGGC

1

2 transposon

LINEbaggins

7105 CUGUGAGGGAUCCUCAACUGUGGGUCAAU

1 no match

7106 UUAUAAGGAUGAUGAUACCGAUUAA

1

0 no annotation

7107 AUGGCUCUCUCAGUCCCUUCCCGGGA

1

1 ncRNA

7108 CAAAAGUAUUCGAGUUGCGACACAC

1

0 no annotation

7109 UGUUUCAUCGUCAGACGGCUCGG

1

1 AT-chX

7110 UCAGCAUUUACCCUCGGCGGCCCCCCAC

1

0 no annotation

7111 UGGCGAGCAAUCAUCCAAGGCUGAGUUU

12 transposon

7112 AACCGGGAUUGCCUUAGUAACGGC

1 no match

7113 AACUGAAUAACGAAUGGAUGACAC

1 no match

7114 AGAUGUCCGGGGCUGCACGCGCG

17115 ACAGCUUAUCACCCCGGAAUUGGUUU

1 no match

7116 UCUGAUGUUACGCCCGAAGAGAUAA

1

0 transposonLow̲complexity

7117 UCAACAAACAACAGGUUAUGGGCC

10 transposon

LTR

7118 UCCCUGGGUACCGAUUUUAGCCGC

1

0 no annotation

7119 UUGGCAUAAAAACAGUGAUAAAGUGC

1

0 transposon

DNA7120 CUAGAAUUGAUUGCAUUUUGGAU

1

1 transposon

LTR

gypsy87121 GGUUCUACCCGACGACGCUGCGCUAACC

1 no match

7122 GACUUGAUUAAAACCAGGCCCCUGU

1

1 transposon

LTR

opus

7123 AUCUCGCGCCGGGCCGUACCCAUAU

1 no match

7124 AGGGUCGGGCCUGGUUAGUACUU

1 no match

7125 ACCAGAGAUCUAGAGGGCCCAGA

17126 ACCUUCAUCCAAGCGAACUGUGUCCCGA

1 no match

7127 UCGCCGAAUCCCGGGGCCGAGGGAGCG

1 no match

7128 CUGUUCUGCUUUCAUUGGUUUUCAG

1

0 ncRNA

7129 UCCUAGAAAAAACGAGGUUCACCCAAU

1

0 transposonLow̲complexity

F-element

7130 GAGCCCAAACGUGAACCAGGUUCGU

1

1 transposon

Unknown

RR50960

7131 CAAGUCGGUCGACGGCGUGCUGAUCA

1 no match

7132 GCAUAGCUAGAGUACGGUAGAGGGGGA

1 no match

7133 ACUCGCCGAAUCCCGGGGCCGAGGGAC

1 no match

7134 GACAGCGAGCCGAACCUUCUUGUCCGC

1

0 coding gene7135 AAAACCUGAAGAUGAUCCUGAGUCUC

1

1 transposon

pseudogene

rRNA
trf

tRNA
CG40084-RA¦CG40084
invader3297

flea
CG34450-RA¦CG34450

1360

rRNA
AT-chX-B
LTR

1 ncRNA

mdg3

rRNA
F-element
297
1360

2 no annotationrRNA

CG4260-RA¦alpha-Adaptin
LINE

Helena7136 CCCUUAGAUGUCCUGGGCUGUAACU

1 no match

7137 UAGGUAAGACGAAUUUAGUCUCUCACUA

17138 GGGCGAAGCUACCAUCUGUGGGAUUU

1 no match

7139 CGUUCUCUGAAGUUCGACCGGCAC

17140 CACAAACAACACAUACCCCGCUGG

1 no match

7141 CUUCGUCCUGGGAAACGGGGCGCGGC

1 no match

7142 UCGAGUGAGACCGGGGGGCAUUCU
7143 ACCGAGGCCCUGUAAUUGGAAUGAGUAC
7144 GCACACGGAGGAGAGCAGAUGAGAGCA

1 no match

7145 ACGGAACACCCGAGCAAUGCCACCGGC

1

0 transposon

LINE

G2

7146 GAGCGGAGAACCAGAGUUGAUGAGC

1

0 transposonLow̲complexity

F-element

7147 CCAAGAUCAUCAACCCGUGUUAU

1

0 transposon

LINE

Cr1a

7148 CGGUGGGCGAAGAGUUGAGUGGGC

10 transposonLow̲complexity

F-element

7149 GAGGAAACGAAAAACCCAUACCGGCACC

1

0 transposon

LTR

HMS-Beagle

7150 UGUACCAAAAAGAGUGCAAUUUAUU

10 transposon

LTR

Idefix7151 CGCAAAGAGAUGGAUGCCGUGAGACA

1

0 transposon

LTR

ninja-Dsim-like7152 AAAAACCUGAAGAUGAUACUGAGUCGC

1

2 transposon

LINE

Helena7153 AUAGGGACGGUCGGGGGCAUCAG

1 no match

7154 UGAGACUACAAACGGAUUGCGGACCGA

1

1 no annotation

7155 AGGGAAAGGAGCCGAGGCGUCGUA

1

2 transposon

LTR

ninja-Dsim-like7156 GUCUCGGGAACUUUCAAGGUGCUGGC

10 coding gene7157 UCCACCCUGAACGCGCCCGAUCUCGU

1 no match

7158 UACAAUCUCCGAGCAGACCCCGA

1 no match

7159 UCGGAAUGCCGGGGCGAGGAGGAGGA

1

0 Su(Ste)

7160 ACCGAAAUGAGGUUAGUCGAGUC

1

0 transposon

LTR

gypsy67161 CGCUUACUGACGGUGGAUCCCAGAAGAC

1

1 transposon

LTR

rooA

7162 UAGAUCUUCACCGUUGACUAGCC

1

0 Su(Ste)7163 UAAACCGUCAUUCCAGCGCAAGUUGUCU

1

2 transposon

LTR

ninja-Dsim-like7164 UCUCCGAAAGUUCAUAUGCCUCGGCAUU

1

0 transposon

LTR

flea

7165 GCGCCCGUAGCUCAGCUGGAUAGAGCAC

1 no match

7166 AAUUCCGAUAACGAACGAGACU

17167 UCAGCGACCGAUAGCGAACCAGUACC

1 no match

7168 CCCUUGAUAAACGUUUGACUUUCGGC

1

1 transposon

7169 CGCCCGUUGCGCCCAGUACAAGAA

1

0 coding gene7170 CGCCAAAUUAUAUCCAUACCCCAUGGG

1

0 transposon

LTR

springer

7171 AACUGAAUAACGAAAUGGAUGACACAC

1 no match

7172 GUCGGACUCCGAGCUCGAUGGUCAC

1

0 transposon

LINER1-element7173 AGGUGGGGAGUUUGACUGGGGCGGA

1

2 ncRNA

7174 AAUCGACCGACCAGCUAUGCGAA

1

0 transposon

7175 AAGAGGACGUGAAACCGUUAAGAGGUU

1 no match

7176 UAAUUACCGGUAUAGCACACUUUUG

1

0 coding gene7177 UAUUCCGAUAAACGACCAUUACACUU

1

0 transposon

7178 AACGAGCUCCAGAUGAUGGGGCCAGUUC

1 no match

7179 UAAGGCCGAGAGCUGAUGACUAGUUGUC

1 no match

7180 UGAUGGAAGACCGAAACAGUUCUGAC

10 ncRNA

7181 CAACGGGUAACGGGGAAUCAGGGUU

10 ncRNA

7182 UGAGCGAACAAACCCAACAUAGUGCAA

1

1 transposon

7183 GACUUGAUCUCGGUGUUCAGUACA

1

0 repeat

LSU-rRNA̲Dme

7184 CAUACCAGUAAUAUCCUCUGGUCGAGA

1

0 coding gene

CG3506-RA¦vas

7185 CCAGAUGAUAUUCCGAAAACAGCCAAAA

1 no match

7186 AAAUAGGGACGGUCGGGGGCAUCAGU

1 no match

7187 UGCCGCGCUAGUUACAUAUAAAAGC

1

0 ncRNArRNA

7188 CGGCGCGGCGAAAUUGGCAGGCG

1 no match

7189 CCAGGAGACACGCUAGGUUGGCC

17190 CUCGCCGAAUCCCCGGGGGCCGAGGGAGCC

1 no match

7191 CGAGCAGGAACCCAGCGACACCGAGUCCA

1

0 coding gene

CG42390-RB¦CG42390

7192 CGGGAUAAGGAUUGGCUCUGAAGAUU

10 ncRNArRNA

7193 GUGUAACAACUCACCUGCCGAAUGU

1 no match

7194 UCAGACAAUCCUGCGACUCGAUG

1

0 transposon

LTR

gtwin

7195 UCCUUGAGGAGCUGGAACCUGGUGA

1

0 transposon

LINE

G2

7196 ACGCGCCGCCGCCCCCCCACGCCC

1 no match

7197 UUGCAAAAACGAGAGCGAUAGAGU

1

1 transposon

LTR

micropia7198 AAAGACCAUGUGACGACGAGGCCCGUGC

1 no match

7199 ACACAUCCGAACGAGCUAGGCAACCAGU

1

0 coding gene

CG31882-RA¦CG31882

7200 UGACGCCUUGCGUGUUACGGUUGUUUCG

10 ncRNA

rRNA

7201 UAUCUUCAGGAUUAUGGUGCUGAAGCU

10 ncRNA

rRNA

7202 GUUUGAGAAGCGCAGAGAACGGCCCU

1

0 no annotation

7203 UUGAACGUGUCCUGAAAGUAGUUGGU

10 Su(Ste)

7204 AACCCGUGAACCCCCCUUGCCCUCGCA

1 no match

7205 UUCGAUUUCAAGUACCGGGCGAA

1

0 repeat7206 CGCGACGCGAAGUGGCUGGGCACAAGU

1

0 transposon

7207 UCCGGGAACAUGCCACCUCCGUUGUUG

10 coding gene

7208 GCAUCCUAGAAUCGACCGACCAGCU

1

0 transposon

7209 ACGCGGGAGACCGGGGUUCGAUUC

1

1 ncRNAtRNA

7210 CUGUUUAUCGACCCUGGAAAGCUGUUA

10 coding gene

CG4038-RA¦CG4038

7211 AACCCUUGAUAAAACGGUUGACUUUCG

1 no match

7212 AACUCGCCGAAUCCCGGGGCCGGAGGGAGC

1 no match

7213 AAUGGCCAUCUCUCGUUGAUCUUAAA

1

0 transposon

7214 UCUCAUCGUCGUAGAACUAGCCCGAGGU

1

1 Su(Ste)

7215 CCAACCGGGACAUUUCUCCAACCAGU

1

0 transposon

7216 CUCGCCUUGAGAUGAGAUUUCCCGG

1 no match

7217 GUAACACCCGAUGGCGAAGAGGAA

1

1 coding gene7218 AAACACAAAAUAAGAAUCGGGGCGC

10 transposon

1 transposon

LTR

G4

0 transposon

LTR

G4

1

0 transposon

LINE

G2

1

1 ncRNArRNA

CG14690-RA¦tomboy20

Su(Ste)Su(Ste)0 ncRNA

0 transposon

rRNA
LINE

Rt1b
CG6058-RB¦Ald

rRNA
LTR

flea
CG41580-RA¦CG41580

LTR

gypsy3

rRNA
rRNA
LTR

LINE

McClintock

G2

Su(Ste)
RSP
LINE

G6
CG1763-RA¦nod

LTR

LTR

flea

opus
Su(Ste)LTR

micropiaCG6238-RA¦ssh

LINE

Cr1a

7219 ACGGACUUGGGGAAUCCGACUGUCUAAU

10 ncRNA

7220 UGCAGUAGAUUCCUGGCAGAGACGGC

10 transposonrRNA

7221 UCUCAUCGUCGUAGAACAAGCCCGAUU

12 Su(Ste)

7222 AAAAACCCGAAGAUGAUCCUGAGUCGC

1

2 transposon

LINE

Helena7223 AGCGUCGAACGAUUUCUGCCCACCUGU

1

1 transposon

LTR

Quasimodo

7224 GCCACAUCUAUCAACAUUCAGCUGGA

1

0 transposonLow̲complexity

F-element

7225 GCCAAUUACAUUAGGCGAGACGGCCC

1

1 transposon

LTR

opus

7226 UACGGUCGACCAACCGCAACCCCUGGU

10 transposon

LTR

opus

7227 ACUCGCCGAAUCCCUGGGCCGAGGC

1 no match

7228 GGAUCCUCAACUGCGAGGGGAUCCUCAA

1 no match

7229 AAUACCGAGAAGACGUUGAACGCAC

1

1 transposon

LTR

flea

7230 GAGGCCGAGCUGUGACCAUCCGAGC

1 no match

7231 UACUUGUUCCCCGGAUAGUUUAGUUG

17232 UGGUCUGAGAGGAUGAUCAGUCACA

1 no match

7233 AGCGCCGGGCCGUACCCAUAUCCGCAGC

1 no match

7234 AUUGUCAGAAUUGAGUAUAGGGGCGA

17235 GACUCUUUCGUCUAGUGGUUAGGACACC

1 no match

7236 GUCGCAAAAGACGCGAGAGUGCUUCCGG

1

0 coding gene7237 AUGGAACACAUAGGGGCUUCGAGGAAC

1

0 transposon

7238 ACGGGAGACGCGAGAUCACUACAAG

1

0 coding gene7239 GGGGAAUGUCCCGAGCGGCAAAGGGG

1 no match

7240 UACCGCCCUAGUUCUAACCAUAAAC

1

0 ncRNA

7241 CCAGGAGACACGCUAGGUUGGC

10 transposon

7242 ACGACGCGAGAGGUGAAAUUCUUGGUACC

1

2 ncRNA

7243 GCGACGACGAGCGAGAUCCGGAUG

1

0 transposon

7244 GGAGUGCCCUUCGUCCUGGGAAACGGGG

1 no match

7245 AACGAAAUGCGUCGCGACCCCUCGUAUC

17246 CACUCUAAAAAAAGCUUCGGGACGAGA

1 no match

7247 CAACGGACCGUCCACCGGUGUUCCC

1

0 coding gene7248 GACGUAGCAGCCCGGGCGUCCUCCAG

1

0 transposon

LINER1-element7249 UCGCCGAAUCCCGGGGCCGAGGGGGC

1 no match

7250 CAAGCCGAGAGGUGACCCAGUGCAU

1

1 transposon

LTR

diver27251 GUCACCUACAGGUCCUGCUGCGAA

1

0 transposon

LINE

BS3

7252 ACUCGCCGAAUCCCCGGGGGCCGAGGGAGC

1 no match

7253 CCGAAAGAUGGUGAACUAUACUUGAUC

17254 UCAACUGUGAGGGGAUCCUCUUAA

1 no match

7255 AGUUAUGGUUCCUUAGAUCGUUAAC
7256 GGAGGCGGCUCAUCAGUUGCUGUCC

LTR

diver2
Su(Ste)1 ncRNArRNA

0 ncRNArRNA
CG6184-RA¦CG6184
LTR

HMS-Beagle
CG13855-RA¦CG13855
rRNA

LINE

G2
rRNA

LTR

0 coding geneninja-Dsim-likeCG9641-RA¦CG9641
CG11129-RA¦Yp3

0 ncRNArRNA

1

0 ncRNArRNA

1

0 coding gene

CG31289-RA¦Dph57257 AGAUCACCCAGACAUCGUGCAGCAGAC

1

1 no annotation

7258 CAGUUCAUUCUUGAGGCCUUCGA

1

0 transposon

LINE

G2

7259 CCCGUACUCUGUGGUGACCAACACACC

1

0 transposon

LINEbaggins

7260 AACAUGAAAAGUGUAUCCAAGGGA

1

0 transposon

LTR

Dm88

7261 CCUGAGAAACGGCUACCACAUCU

1

0 ncRNA

7262 CAAGAAUAACAGGACCAUCCAAGAGU

1

0 no annotation

7263 GACUAGGGAUUGGCGGCAGUUCAU

1 no match

7264 AUGGUGCUUACCAAGAUGAAGGAGACC

17265 AACCAAGCGCGGGUAAACGGCAGGAGU

1 no match

7266 CAACCGGAGCACCGAAAUAAUUGAUCC

1

1 coding gene7267 AACGACGAAAACUAAUAAAGAGCAU

1

0 transposon

7268 GUCUGGUUAAUUCCGAUAACGAA

1

0 ncRNA

7269 GCUGCGGGAUGAACCGAACGCCGG

1 no match

7270 GAACUUGAGACCCCAGCCGCUCC

1

0 no annotation

7271 GAUGUCGUAUCACCCAGGACGCCCG

1

0 transposon

7272 UCAGGUCGGAGCGUGGCGUGAAUGA

1

0 Su(Ste)

7273 ACCGGCCGAAUGAACUAGCCCUGAA

1 no match

7274 CCAAGAUCAUCAACCCGUGUUUA

1

1 transposon

7275 AUGGCUCUCUCAGUCGCCUCCCGGGA

1

1 ncRNA

7276 GAUCGAGCGUCUGGAGGAUGUGGACCA

1

0 coding gene7277 GUUACUAUGAUGACGAGUCUCAAGCUG

1

0 transposon

LTR

opus

7278 UGCAUUCGCGUCGAGGCCCAGGAUUG

1

0 transposon

LINER1-element7279 CAGAGUGGUUACAUUAAAGACGAAA

1

0 transposon

LINE

INE-1

7280 AACUGAAUAAACGAAAUGGAUAGACA

1 no match

7281 CAAGAUAUGACCAAAACCCAGACACC

1

1 transposon

DNA7282 AGAUCCCCGAAUCCGGAGUGGCGG

1 no match

7283 GCGAGCACAUGGAUUUACCGAUAAAGUA

12 ncRNA

7284 GGAACACGAAACGAAAGCCCCUGU

1

2 transposon

7285 CCCCCUCCUGUCUAAGGAAUGUCCCGA

1

2 coding gene

7286 CCCUGAACAAUACACUACACCGCAGC

1

0 transposon

LTR

mdg3

7287 GAGGCCGAGCUGUGACCAUCGAGC

1

0 transposon

LINER1-element7288 GAGAGAAGACUAACCCGACGAGA

1

1 no annotation

7289 UCCCCUGAUCAAACAUCGUCUGU

1

0 transposon

LINE

Cr1a

7290 CAGAUCGAAAUCGUCACUGCUGA

1

0 transposon

LTR

gypsy

7291 ACCGUUUACACAUUUAUAUUUUGUU

12 transposon

LINE

Cr1a

7292 ACUCGCCGAAUCCCGGGGCGAGGGAGC

1 no match

7293 UAGUACAAUAGAUCCGACUGGGCCAG

1

0 transposon

LINEbaggins

7294 UCUCGCCUCCUCUGGACGUCUUCG

1

0 AT-chX

7295 AACCGAGAUUCCCUUAGUAGUGGCGAGC

1 no match

7296 GCAUUCAUAUUAUAAUUGCCUAUCCCAGA

1

1 transposon

LTR

gypsy

7297 CAAACCGAUGUGCUAUCUUGGCUGA

1

1 transposon

LINE

Doc

7298 ACCCUCCAAGCCUAAAUACUCGUAC

1 no match

7299 CGUUCCGGAGAGGGAGCCUGAGAAA

17300 AACCAACCGGGAUUGCCUUAGUAAC

1 no match

7301 AGAGAUACGAUAGAUGCAAAACGA

1

rRNA

0 coding gene

CG4264-RA¦Hsc70-4
CG32628-RA¦CG32628
LTR

rRNA

LINE

Rt1b
Su(Ste)

LINE

Cr1a
rRNA
CG10333-RA¦CG10333

1360
Uhg2-RALINE

Rt1a
CG13591-RA¦Ssl

AT-chX-B

2 ncRNA
0 transposon

opus

rRNA
LINE

Circe

7302 GUGCCAGGCUCGUAUAACGUUAAUGAU

1

1 ncRNArRNA

7303 AGCCAGGAGGCGAGCCAGGUUAUACCGCA

1

0 coding gene

CG7014-RA¦RpS5b

7304 CAGCUCGGGGAGGUAGUGACGA

10 ncRNArRNA

7305 AUGAGGAGUGUCCCUGCGACUGUGA

1

0 coding gene

CG31948-RA¦CG31948

7306 CCAAUGUGGAUUUUCUUGCCCCCGUAGUUGCUCU

1 no match

7307 AACUUCGGGGUAAGGAUUGGCUCUGA

1

1 ncRNA

7308 UGAUACGAGGGAGAAUUGUGAGUCGG

1

0 transposon

7309 AGUUCGUUCCUGAGUGCGAGCUCCA

1 no match

7310 CACGAGUUCCUCUGCCACAUGCCC

12 Su(Ste)

7311 AAACAACACAAUCGACCCCGAAAUUUUU

12 transposon

7312 AAGCCCAAGAUCGAGGUGACCUA

1

0 coding gene

7313 CUGCCCAGCGCCUCGGAUGGAAGCCG

1 no match

7314 CACUGAGUACGGGGCUUACUGAAGUCA

17315 GGGGUAAAGGCCCACUAAGGCGACGAU

1 no match

7316 UGAUUACGUCCCUGCCCUUUGUAC

10 ncRNA

7317 ACCCUGAACAAUACACAACACCGC

1

0 transposon

7318 GUUGUCCUAUGCACGCCCAUUUGCCCA

1

1 no annotation

7319 GUAAUUGGAAUGAGUACACUUUAAAU

1

0 ncRNArRNA

7320 GUAUCUCGAAGAACGGCCAGACC

1

0 coding gene

CG8280-RA¦Ef1alpha48D

7321 UGCCUCAACAUUUGGUGACCUCGACGUU

1

1 no annotation

7322 AGACCGUAAACGAAAAGCUAAGA

1

0 transposon

LTR

Idefix7323 AGAGACUUAAAUAUCCCAUCAGUUACC

1

0 transposonLow̲complexity

F-element

7324 AGAGAGAAGACUCUCACCCGACGAGA

1

0 coding gene

CG40609-RA¦CG40609

7325 UUAAUUCCGAUAACGAACGAGACUCA

1

0 ncRNArRNA

7326 ACCCGGAACAACAAAUGUCGUAAC

1

0 no annotation

7327 GUUGGUGGAGCGAUUUGUCUGGUU

12 ncRNA

7328 AAACCUGAAGAUGAUCCUGAGUCGCAU

1

1 transposon

LINE

Helena7329 GCGUUCGUUGACGUUGAUGGCUGCGG

10 transposon

LTR

HMS-Beagle

7330 CAACGAGUUCCUCUGCCGCGUGCCUA

1

0 coding gene7331 CGAGCGAACAGUGGUAUGACGCUACGU

10 ncRNA

7332 ACUGACUAAAUGUCUCAAAAAGGGA

1

0 transposon7333 UUCUCAACAGGCCGUACCAAUAUC

1

0 ncRNA

7334 UGAGACUACAAACGGGAUUGCGGACCC

1 no match

7335 GACGUCAUUAUUUUUUCCGAAAACGAA

17336 AAGACCUAUAAACACACUCAACAGAC

1 no match

7337 ACGGCUACCACAUCUAAGGUAGGCA

17338 UAGAUGAUCUCGGGAACUUACUUAC

1 no match

7339 AGCGACGUUGUGACCACUGGACU
7340 UGCUUCUGUUGUGUGGAGUCCUGGGA

1 transposon

0 transposon

rRNA
LTR

Rt1c
Su(Ste)LTR

17.6
CG4264-RA¦Hsc70-4

LINEbagginsrRNA

Unknown

RR50960

rRNA

CG40719-RA¦CG40719
rRNA
LTR

RR50207
rRNA

LTR

invader3

1 ncRNArRNA

1

1 coding gene

CG33525-RE¦CoRest

1

0 coding gene7341 AAAUUCCGUAAACGAAGCCCAAAGUUC

1

1 transposon

7342 ACUCGCCGAAUCCCGGGGCCAAGGGAG

1 no match

7343 UUUGUAAGGGUUACAGGGUCAUCAA

1

1 repeat

SAR̲DM

7344 AAGGUACAAUGGUAUGCGUAGA

1

0 ncRNArRNA

7345 UGCCGGAGCGAGGAGGAGGACUAGCUG

1

0 Su(Ste)

Su(Ste)7346 UUUCAAAGCUCGACUUAUACAAU

1

0 no annotation

7347 ACCACCCUGAACGCGACCCGAUCU

1 no match

7348 AACGAACGAGACCUUAACCUGCU

1 no match

7349 GCCCAGAGUGGCGGAAUUGGUAGAC

1 no match

7350 AGCGAUGAAAACGACAAGAGUCUUGAC

1

0 coding gene7351 AUCACCCAUAACCCGGGACAAGUUUAC

1

0 transposon

LINE

Doc2

7352 GGUGCGCUUGUGACGGCCCGUGA

1 no match

7353 CAAGCUAGACUAUGUAUCCCGGG

1

1 transposon

LINE

Doc

7354 AAAAACCAUCUCCGACCGCUAUCCGA

1

1 transposon

LTR

accord7355 CGUACACAUAUUUCGCAACGUGA

1

0 repeat

HETRP̲DM

7356 UGUUUCAUCGUUAGACGACUCGGG

1

1 AT-chX

AT-chX-B

7357 AAUUGAUGAACGUCGUGGAAGACA

1

1 AT-chX

7358 AGCGAAACUAAGUGAGCCAAGUGGA

1

1 transposon

LTR

invader47359 AAGUACGAAAAGUAGUGACCUUGCGAA

1

0 transposon

LTR

gypsy87360 UCUCAUCGUCGUAGAACAAGCCCGCGG

1

1 Su(Ste)

7361 AGAUCCCCGAAUCCGGAGUGGCG

1 no match

7362 AAUCUCGCCUGGGAGUGCUGGACCUGCU

1

1 coding gene7363 UCUUCAACGACAACUCUUUUCCACUCCC

1

0 transposon

7364 UGCUCCCUGAGCCACCACAGGCCCCGUCU

1 no match

7365 AGCGACGUCGCUUUUUGAUCCUUC

10 ncRNA

7366 UAAAUACUGAUUUUCUCGAGAUCGA

1

0 transposon

7367 CGCGGGCGGCCCGGGUUCGUUUCCCGGC

1

1 ncRNA

7368 GAUCCACUGAAGCUUAUCCUUUGCU

10 ncRNA

7369 AAAACCUGAAGAUGAACCUGAGUC

1

1 transposon

7370 CUUGAAAUGAUGAUGACUAAGGUC

10 no annotation

7371 AAACCAUGCAAUGCACCCGACCGAUC

17372 UUAUAUCGCGAGUGCCGUAGAGGUA

17373 GAAAAGUUUAAACUGAUUGGCAGGA

1

0 no annotation

7374 AAGAAAAGCAAAAAUUUGACGGCAU

17375 AGAGACAAUUGACGGUACCGCACAC

17376 UAAGGCUAAAUACCGGCACGAGACCGAU

1 no match

7377 CCAGACGGGAUUACUCUGGAAGGACG
7378 AACGCAAUAUUGACAUCAUUCAGC

CG4986-RA¦Mst57Dc
LTR

Rt1c

CG15734-RA¦CG15734

AT-chX-A

Su(Ste)CG2146-RA¦didum
LTR

ninja-Dsim-like
rRNA

LTR

GATE
tRNA
rRNA

LINE

Helena0 transposon

LINE

BS

0 transposon

LTR

invader3

0 transposon

LTR

diver20 transposon

LTR

Dm88

1

0 transposon

LTR

ninja-Dsim-like

1

2 transposonLow̲complexity

F-element

7379 AUGAUAUGCACCGAAAGUAUAUGAG

1

0 Su(Ste)

7380 UCGGCCGAAUCCCGGGGUCCGAGGAGCGAG

1 no match

7381 GGACAACUGUGAGGGGACUCCUCAA

1 no match

7382 CGGACAGAGACGGCGCAUUUUCCAU

1

1 transposon

7383 UAGGUAAGUGGCGGCCAUAAAACGC

1

0 no annotation

7384 CGGUCUGGUGGUUUGAGCGGUGUGCCC

1 no match

Su(Ste)LTR

McClintock

7385 CUGCGAGAGAUUUGGAGGCAGAAG

17386 UGAGCAACCCGGGGGAACUGAA

1 no match

0 transposon

LTR

ninja-Dsim-like7387 UAGAUCUUCACCGUUGACUUGGCCC

17388 AUGGUGACCACGGGUGACGGGGA

1 no match

7389 GCCGAGAUUCCCACCCUGCCGUGGUCA
7390 GGCCGCCUCAGAAUUGCCCAGCGAGUG
7391 ACUCGCCGAAUCCCGGGGCCGAGGGGAG

1 no match

7392 UCAAGAAUAACAGGACCAUCCAAGAG

1

0 no annotation

7393 AACAUUCGAGACCCAACGGCACGUGACAC

1

1 transposon

LINE

Rt1b

7394 UCUCUAUCGUCGUAGAACAGCCCGA

1 no match

7395 UGACCUAAUGACCCAAGGAAGAUUCCCU

1 no match

7396 CUGAGAACUUGCUGAUCGAGGCG

1

2 transposon

LTR

ninja-Dsim-like7397 CACUAACUGGAGGACCGAACCCG

1 no match

7398 ACCCGAGAUUGAGCAAUAACAGGUCUGU

1 no match

7399 UUGGGAACACCGCGCGUUGUUGGCCUC

1

1 ncRNA

7400 ACCAAUCUUAAUCGGGGACUCGCAU

1

0 no annotation

7401 UCUGCGGCGAAGAUGUAACGGGGCU

1 no match

7402 AACAUGCAGAUCGUAUGGUCUUGUACCG

10 ncRNA

7403 AGAACCAUUACGGAAAAAGCUCGAA

1

0 transposon

LINE

Cr1a

7404 AAGAACCUGAAACCGUAUGCGUAC

1 no match

7405 AUGCUAACUAGUUACGCGACCCCC

1 no match

7406 UUCGAGAAGCGUUUGAUCGAGUGUGG

10 transposon

LINE

BS3

7407 GGAGUGCCCUUCGUCCUGGGAAACGGG

1 no match

7408 GCUUCCGAUGACCAAUGUUGGCGA

1

0 transposon

LTR

GATE

7409 GCCGAACGUAGUCUCGAGAGCGAGAG

1 no match

7410 UAUCAUGAUGUUACCCGCAGCGGA

1

0 transposon

LTR

opus

7411 ACUCGCCAAAUCCCGGGGCCGAGGGAG

1 no match

7412 CAGCUGCUGACCACCCACACGCACGA

17413 UCUCAUCGUCGUGAACAAGCCCGA

1 no match

7414 GACCGAGCAGGACCCCGGGCGACACU

1 no match

7415 GGUAGGGAGUUUGACUGGGGCGGU

17416 GCCCGGGUGGAGCCGCCGCAGGUGC

1 no match

7417 GUAAAUAAACUCGUUGCUUUGAUUGG

17418 ACCUGAUUGAUAGACGACGACCCC

1 no match

7419 CAACACAUGACGCGACAAUUCUGG

17420 AGCGACCGCCACAAAAUCGACGACCGA

1 no match

7421 CCCGCAAAAAUUAAGGCCGUAGUGA
7422 UGGGACAAUAAACAUGCACUCCAGC
7423 AGCGGUUCUGACGUGCAAAUUGAUCGU

1 no match

7424 CGGGGGACAGCCCUUUGCCGC

1 no match

7425 GGAUCCCUCAACUGUGAGGGGGAUCCUCAA

1 no match

7426 UCUGACGAGAACUCGAGCCGCGUAG

1

0 no annotation

7427 ACCCUUGAUAGACGGUUGACUUUC

1

1 transposon

7428 GCCCGGAUAGCUCAGUCGGUAGAGCAUU

10 ncRNAtRNA

7429 GAUCGGAGAUAUCCGCCCAGCUGGCC

1

1 coding gene

CG6606-RA¦Rip11

7430 CGAGCGUGGCCUGAUUGCUAUGCACCGA

1

1 repeat7431 CGAGAUGACAACCUUGGACCUGACCAG

1

0 transposon

7432 GCAGAACUCCGAUGGCGAUAGGA

1

0 no annotation

7433 AACACUCAGAACGUCUUGAUUCGA

1

0 transposon

7434 CCCUUAGAUGUCCUGGGCUGCACGCGC

10 ncRNArRNA

7435 ACUCGGAAGCUAAGCAGGGUCGGGC

1 no match

7436 GGGGAUGCGGCGGGACCGGGGGGG

1 no match

7437 UGGAAUCCUGAACGUCAGCGCCA

1

0 coding gene

CG18743-RA¦Hsp70Ab

7438 CUGUUCACAUGAACUUGGAAUUCCC

10 ncRNA

7439 UAAAGUCUCAAGGAACAACCCUAAUAGA

1

0 transposon

7440 GGGAUAGGUAAGUGGCGGCCAUAAG

1

1 no annotation

7441 AUUCCGAGGAACCCAUUGAUCCAGCUGC

1

0 no annotation

7442 CAUCCUCUACACCCUGUUUACAGCAAA

1

0 transposon

7443 AGGUUGCGUGUUCAUAUCACGUCGGGG

11 ncRNA

7444 AGGUGGGGAGUUUGACUGGGGCGG

11 ncRNA

7445 UCAAGAGACGCUUGAUAGCCUAGUA

1

2 transposon

7446 CUGAUAAUGAACCGAACUUUACCUC

1

0 no annotation

7447 GCAUUCAAUACAGCGAGAUGGUCCA

17448 CCGAGGAUGACAUGCAGUCUUUG

17449 AACUAACAAGGAUUUUCUUAGUAGC

1

0 ncRNA

7450 GAGAGAGGGGCCCGUGCCUUGGAAAGC

1 no match

7451 GUGACUGACAGGGGAGCAAAUAU

1

0 transposon

DNA

H7452 AAUGAAACGACAGUGUCCCGCGG

10 transposon

LTR

springer

7453 AUGUCUAUGAGGUGACCGUAAUGAGC

1

1 transposon

LTR

ninja-Dsim-like7454 UGUUUCAUCGUUAGACGUCUCGGGCG

1

1 AT-chX

AT-chX-B

7455 AUGACCGGACGCCCGACGCGCACUGU

10 coding gene

CG4750-RA¦loopin-1

7456 GUGGAGCCGUACCUGUUGGUUUGUCCC

1

0 ncRNA

7457 UCCGGCGAUAAACUUCUUGUCCUUCGU

1

1 transposon

7458 ACCGAAUUGAAAUUGGAUUACGG

1

0 no annotation

7459 UGCCCCGAAGGUUGCCCUCUGUGACG

1

0 transposon

7460 AUGGCCCUCUCAGUCGCUUCCCGGGA

1

1 ncRNA

7461 AGCUUCAUCCAAGAGUACUGUGCCCGA

1

1 transposon

LINER1-element7462 AAAAACCUGAGAUGAUCCUGAGUC

1 no match

7463 CGGACUAUCAGAGAAAGCUAUUAA

1

0 transposon

LTR

McClintock

7464 CAUGCCAAAUUCGGACCUAAUGCACGA

1

0 transposon

DNA7465 CCGGAGAUAAGGUUCAAUGACGGG

1 no match

7466 CAAGAUAUGACCAAAGCCAAAGACAC

1

0 transposon

LINE

F

7467 CGAACAAGCACCUUCCGACUCAACGU

1

0 transposon

LTR

Rt1c

0 Su(Ste)

Su(Ste)1

1 coding gene

CG11198-RA¦CG11198

1

0 coding gene

CG32486-RD¦CG32486

5SrRNArRNA

0 coding gene

CG13255-RA¦CG13255

0 ncRNArRNA

0 transposon

LINE

Doc

0 transposon

LINE

INE-1

1

0 transposon

LTR

Quasimodo

1

1 transposon

LINE

BS3

LINE

Rt1b

trf
LTR

micropia

LINE

RR49783rRNA
LTR

Stalker2

LINE

G2
tRNA
rRNA

LINE

Rt1b

1 transposon

LTR

Quasimodo

0 transposon

LTR

opus
rRNA

rRNA
LTR

G4

LINE

R1-element
rRNA

1360

7468 AGCGAUGAUACCGAAGAACGGGA

1

0 transposon

LTR

Dm88

7469 ACACUCAUAACCGAGCGACUGUUCAAUC

1

1 transposon

LTR

GATE

7470 CCGAAAGAUGGUGAUCUAUGCCUGAA

1 no match

7471 UGUCAGUUCAAGUCCGACAGCCGGCACCA

1 no match

7472 AGAACGAUGACGAUCCCACGGCUGGAUU

1

2 transposon

LTR

ninja-Dsim-like

7473 AUGAAAUUCAUGAAGCUGUGGCCG

10 transposon

DNA

RR51476

7474 AUCACAUCACGUUCUCACCGUGGAGACC

1 no match

7475 AGAUCAACAAAGUACGAUGGGGAA

1

0 no annotation

7476 UCCGGGUAAACCGCUGAACCACU

1

0 ncRNA

7477 CAAUUUGUAAAGCUCGAUUGCAAGA

1

1 transposon

7478 AGUUCGGAUCUCGCCGGGGCCUCCA

12 ncRNA

7479 AACGAAGACAUACACAGAGACCUAA

1

0 transposon

LINE

Doc

7480 GGGUGAGUCGGUCCCUAAGGCGAGGC

1 no match

7481 CCGCCUACAAUACAGAUACCCACUU

1

2 transposon

LINE

Rt1b

7482 AUGAGAGACGAUGCAGAGCGGGUAG

1 no match

7483 CAACUGUGAGGAUCCUCAA

17484 AAGAAGGGCGUGAAACCGUUAAGAGGU

1 no match

7485 GGUCCUGAGAGCUGGGCGAGCGCCGUUC

1 no match

7486 ACGGGAAAACAUACCAGGUCCGAA

1

1 ncRNA

7487 CCGGCUAGCUCAGUCGGUAGGGCAUG

11 ncRNA

7488 GCAUCGAGAAUAUUACACAGCCAUU

1

0 transposon

LINE

Doc

7489 AAACGAAUCGAAAACCAGCAGACGU

1

1 transposon

LTR

opus

7490 CUCCCCGCCCCACCCCGCGUCGCGCCGC

1 no match

7491 UAACACAUCGAUUUCGUGACGUCGC

1

0 transposon

LINE

X

7492 AAAACCUGAAGAUGAGUCCUGAGUCG

1 no match

7493 AAAUAACUCCAGCAGAGACCGUACCCG

1 no match

7494 CAUGAUGUUAAUGCCCCUGGUAGU

1

0 transposon

LTR

gypsy

7495 ACCACCCUGAACGCGCCCGAUCCCGU

1 no match

7496 UACUCGAAGACACCACGUUGAAAGUGG

1

1 transposon

LTR

ninja-Dsim-like7497 UUCCGAAUGAUCUAGAGCUUAAUUU

1

0 transposon

LTR

diver27498 UAAGGGAGCUUGACUGCGAGACCUAC

1 no match

7499 ACAGUCUAUGAAAGGUGUGUUGCCCAU

1

2 transposon

LTR

GATE

7500 GCGGGACUUACGGGAGAUGCUCAAGA

1 no match

7501 GAAGAAGAGAUGCCCAGUGAGUUUGCA

1

0 transposon

LTR

ninja-Dsim-like

7502 AUCACAGCCCAACUGCGGACCCAUUAA

1

0 coding gene

7503 GCGCGAGAAGGAGCUGGGCGAGAA

1

0 coding gene

7504 UAGACCGAUAAGCUUACUAACAUGUC

1

0 transposon

7505 GAGAGUGGACGGGAGCGGCGGGGGCGG

1 no match

7506 ACCACCCCUGAACGCGCCCGAUCUC

1 no match

7507 ACCUCCACCUGGACCCAGAUUUCC

1

0 coding gene

7508 AACCAACGGGAUAUCUCAUACUCGAG

1

2 transposon

7509 CUACCAUGGUUGCAACGGGUAACGGGGA

10 ncRNA

7510 UCCGAAAACAAGGCCCGUCGCUAAU

1

0 transposon

7511 UCAACGGAUUGGACGACGGCGGC

1

0 no annotation

7512 AAACGGAAACUUCAUCCCAGUCGGA

1 no match

7513 CCAACGAAUACCGAGGGUUUUGAC

17514 AACACUAGACAAUGAUGACCGAAAC

17515 GCUCUCGAAUGUAUGCCCGAUAUACGGA

rRNA
LTR

mdg1
tRNA

2 no annotation

rRNA
tRNA

CG14034-RB¦CG14034
CG5119-RA¦pAbp
LINE

Doc

CG31206-RA¦CG31206
LTR

micropia
rRNA

LINE

G6

1 transposon

LTR

GATE

0 transposon

LTR

McClintock

1

0 transposon

LINER1-element7516 GCCGUCAUUACAUUUUUUUGAGCUGC

1

0 transposon

LINE

TART-A

7517 UGCUACUCGAAUGCUUGCCCGAUAUA

1 no match

7518 AGAUCAGACGUGGCGACCCGCUGAAUUU

1 no match

7519 CUUGGACUACAUAUGGUUGAGGGGUUGUA

1 no match

7520 CGUACCAAAAAACCCGAUGCUUCUGGC

10 transposon

LTR

7521 CGCGAGAGGUGAAAUUCUUGGACCG

10 ncRNA

7522 AAGGUGUGACGACAAUUGCAUCGGUU

1 no match

7523 UCUCCGGGAGACACCAAUGCUGGCCAAG

1

0 coding gene7524 AAAAUUCAAAGACGACGGCCCACC

1

2 transposon7525 UUUGGGCUCCGGGGGAAGUAUGGU

10 ncRNArRNA

7526 GACAUUUGCGAGGUAUACCGGGAU

10 coding gene

CG34170-RA¦CG34170

7527 UAGGAACGAAAGAGGCGAGGACAA

1

0 coding gene

CG40271-RA¦CG40271

7528 UGAGACUACAGACGGAUUGCGGUACC

1 no match

7529 UGCACCAAGAACUGAAGGCCAUU

1

0 transposon7530 ACCUUAUGGGACAUGUGCUUUUAU

10 ncRNA

7531 GGCUUUGAGAGGCGCCGUAGUUAAA

1

2 no annotation

7532 UAUUGAUUCCGUGACGCGUCUGCU

1

0 coding gene7533 UUCCAGACGACUAGGUGGAGCUUUAA

10 transposon7534 AACUGGGAACGUCGAUGGCCUGGCC

1

1 coding gene7535 AGUGCCCAAAAACUAUAAGUUGACCAA

1

0 repeat7536 GAGAGAAUGAUAAGAACCAUUACGG

1

0 transposon

LINE

Cr1a

7537 GAGUCCAUGUCCUCCUAGCCUGC

1

0 transposon

LINE

G2

7538 GCAGACCCAGAAAAUCCCAGACC

1 no match

7539 UGUUGAGAUGUGACGAAUCUGGCCCA

1

0 transposon

LTR

Quasimodo

7540 CCCGAAAGCAGAUGAGGUAACGUAC

1

0 transposon

LINE

F

7541 UGAUGACCGAAAUUUUGAAAAACG

1

0 repeat

SAR̲DM

7542 UAAUUCCGAUAACGAACGAGACU

1

0 ncRNArRNA

7543 GGCUUUGAGAGGCGCCGUAGUUACCUAC

1

2 no annotation

7544 UCAUCGAGAAUCUCACGCCCACAGGC

1

1 transposon

LINE

Doc3

7545 UGUUGACAAAAAUGAGGCUGACCA

1

0 transposon

LTR

roo

7546 UCCAAUAUCACCGCGGAGACAGUCGC

1

1 transposon

LINE

Doc4

7547 UUCAACCAGAUGGGCCUGGAGUACUUC

10 Su(Ste)

Su(Ste)7548 GAGUGCUUGAUAUGACCAGCUUGG

1

0 Su(Ste)

Su(Ste)7549 UAAAAGGGAAACAACCCAGACCGUC

1 no match

7550 UGACAUAUGAGACUACACCAGAAA

1

0 transposon

297
rRNA
pseudogene

LTR

LTR

springer

invader1
rRNA
CG8728-RA¦CG8728

LINE

G6
CG5060-RB¦CG5060
RSP

LTR

Idefix7551 CCCGAAAGCAGAUGAGGUAGCGUAC

1

0 transposon

LINE

FW

7552 UCAACGAGAAUCAUCCAUCAUCCAGA

1

0 transposon

LINE

G2

7553 UAACGACCCAUUUCUGUUACUUUGUGU

10 repeat7554 UCCAAACCCGAAUCCCAACAGUCCCGC

1

0 coding gene7555 CCCCAAUCAAUGAUUACAGCUGAGGCCC

10 transposon7556 AGGAGCUGGGCCGACUGCUGCUGGAGA

1

0 coding gene7557 GUCUCAGAGAGCAAAUCGGCAAGAC

1

0 transposon

LTR

springer

7558 GCUGCACGAAAUGAACCCGAAAGC

1

0 transposon

LINE

Doc3

7559 UUCGAGAACAAACGAUACUGUUCAAUC

1

2 transposon

LINE

G2

7560 GAGAAUCGCAUCUUAGAGUAAAUGGCC

10 transposon

LTR

gypsy87561 AAUUCCAUGAAAAAGACAUUGGCCAU

1

0 coding gene7562 AAGUAUUGGCAUCUACCUAGUUU

1

0 transposon

LTR

Idefix7563 GCAAGACGGACAAACGGGUGGGGU

1 no match

7564 AAGGCCGAGAGCUGAUGACGAGUGUU

1 no match

7565 UGCUAACGAAACAGUAACACUAGGUC

1

2 transposon

LTR

Idefix7566 ACGGAAUGGAAUCGAGCGCUGAGUAC

1

1 transposon

LINE

X

7567 UGUAUCCAAAAAUCAUCUGUGCGAGU

1

0 no annotation

7568 CACUAUCAGACAGCAACAUUGACCC

1 no match

7569 AGAGCUCCGAUUUACCCAUGCAAC

1

0 coding gene

7570 CUGGCGAAUAAAAGUAAACGAGC

1

0 transposonLow̲complexity

F-element

7571 AAUGGCUGCAACGGGGUAACGGGGGAAUC

1 no match

7572 AAGUUAACAACCGAAACUUAUGGCAC

1

0 transposon

LTR

rooA

7573 UGAGACUACAAGCGGAUUGCGGACC

1

1 no annotation

7574 GCAUCCGGUGCGUCCUUAACAGUCCUU

1 no match

7575 AUGGCUCUACUCAGUCGCUUCCCGGGA

1 no match

7576 ACAUUCUUAACCGAGCGACUGUUCAAU

1

1 transposon

LTR

GATE

7577 CUCCCGGGGGAAACAUGGUCAAGUU

1

0 transposonLow̲complexity

F-element

7578 ACCCACCCCUGAACGCGCCCGAUCUCGUC

1 no match

7579 UCCGAAAACGUAAUGCUGCUUUAUCCA

1

0 transposon

DNA

S

7580 UCCUGGCAGAGACGGCGUCGCUCGAG

1

0 transposon

LTR

Quasimodo

7581 UUGGAAAUUAACCAAAAACAGCAUGG

1

0 Su(Ste)7582 UACUGAGAUCAUACGAGAGCUGAAA

1

0 transposon

LTR

flea

7583 AAAACCUGAAGAUGAUCCUGAGUCA

1

1 transposon

LINE

Helena7584 ACCACUUUCAUGCUUGGGAUUGUGAA

1

0 ncRNA

7585 AUGGCUCUCUCAGUUCGCUUCCCGGGAA

1 no match

7586 ACGGAAUGGAACCGAGCUCUGAGUA

1

0 transposon

7587 GUCAUGUGCAUCCUGGUGGACCCCAGCA

1

0 coding gene

7588 CAUCGAAGGAACGAUCGCAAGGCAGCA

1

0 transposon

7589 CAAUGCAUCUUGAACAUCGUCCC

1 no match

7590 AUGCCGGAGCGAGGAGGAGGACUAGU

17591 UCCCCUGGACCUGUACUGACGCUCAU

1 no match

7592 UGGCGGAGGCGGUCGGCGGGGGG

1 no match

7593 CCAAAGUUGAUCCGAUCCAACAA

1

0 transposon7594 AAGAACAAAAAGAGGACUUCGAGUA

1

0 no annotation

7595 CUUAGUUGGUGGAGCGAUUUGCCUGGU

1 no match

7596 UAUCUCAAGACGUGUUUGACCCCAGC

1

0 transposon

7597 GACAACCAGAGAUCUAGACGGCCCAA

1

1 no annotation

7598 UCUGUUUCAUCGUUAGACGGCUCGGG

1

0 AT-chX

7599 AACCAAUCCCAACCAAACCCGUCAA

1

0 transposon

LINE

G2

7600 CCGAAUACGAGGAACAGGCAGAAUCCAA

1

1 transposon

LTR

gypsy47601 AAAUAACUCCAGCAGAGACCGUACCC

1 no match

7602 AACACUGCCGAGGAUUAUUGAAGUC

17603 GGUCCUGAGAGGAUGGGCGAGCGCCGUUCC

1 no match

7604 UGGCAAACGAGAGCUCUUCCGGGU

10 transposon

LINER1-element

7605 CGCUCUUCACCACAGAGUCUCCGAGGAGU

10 transposon

LTR

GATE

7606 AAGAGAUGGAAAGCACGCAUCGA

1

0 transposon

LTR

springer

7607 ACAAACAGAAUUCCCGAAUGAGAC

1

1 transposon

LINE

Cr1a

7608 AUUCACCGAGCGUUGGAUUGUUCACCC

1

1 ncRNA

7609 UGAGCGAACAGACCCAAUAUAACGCA

1

0 transposon

LTR

7610 UCAACUUUGAGGGGAUCCUCAA

1 no match

7611 UUUGCAAAACGGGAGCGAUAGAGC

1 no match

7612 ACCCGGUUCAUCACUCUAGGACGAA

1

0 transposon

LTR

7613 UUCAACCGGACGGGUCUAGAGUUU

1

1 no annotation

7614 UGGUUGCACGGGUAACGGGGAAUC

1 no match

7615 UACGGUGCCCAAAUUAACAACUCA

1

0 ncRNA

7616 GGGUAGUACAAUAGAUCCGACUGG

10 transposon

7617 CUUAAAGGAAUUGACGAAAGGG

1

1 ncRNArRNA

7618 AAAACCAAGCUUUUGGGCUCCGGGG

12 ncRNArRNA

7619 CCGAUGAACCUGAAUAUCCGUUAUGG

10 ncRNA

rRNA

7620 CAAUGUGAUUUCUGCCCAGUGCUC

10 ncRNA

rRNA

7621 GGCAGCGACGACCCAUUCGAACGUC

1 no match

7622 UCGAAUUCAACGAGGUAUGGCAUU

1

1 repeat7623 AGAGUGCGAAGAGCGAUGAUACCGA

1

0 transposon7624 AAACCAUUCAUAGACGACCUGCUU

1 no match

7625 GAAUUGACGGAAGGGCACCACCAGGAG

10 ncRNA

7626 GGAGACAAGGUUCACCCGCUUCCAA

1

1 transposon

LINE7627 GCGGAAAGAGAGCGAUUUUGGC

10 transposon

DNA7628 UGAAAACGAAGGUGACCUUUUUGGGU

10 transposon

LTR

7629 CAAGCCUGAGAGGUGAUGCGUAGCC

1 no match

7630 UCAAAUAAUAACGGAGGUGUCCCAA

1

0 ncRNA

7631 GUGAUCGAUACGCCCCCUCAGAG

1

0 transposon7632 AAACCUUCGUAGACGACCUGCUUC

1 no match

7633 ACGUACGCGAAACGUGAAACCUGC

1

trf
CG7417-RA¦Tab2
LINE

CG7061-RA¦rab3-GAP

CG41322-RA¦CG41322

CG3620-RA¦norpA

Su(Ste)

rRNA
LINE

X
CG18810-RA¦CG18810

LTR

1 Su(Ste)

flea
Su(Ste)

LTR

3S18

LTR

1731
AT-chX-B

0 coding gene

0 coding gene

Doc3

CG1503-RA¦CG1503

rRNA
McClintock

297

rRNA
LINE

baggins

SAR̲DM
LTR

Dm88
rRNA
Rt1b
1360
flea
rRNA

LTR

Max
CG1763-RA¦nod

7634 UGAUUCCGCCUCCAGUUUCCUGGGCCC

10 coding gene7635 UUACAAAGGAUGGACUGAGAACC

1

0 transposon

LINE

CG16817-RA¦CG16817
Cr1a7636 AUUGCAACGAACUGACGGACUACU

1

0 transposon

LTR

HMS-Beagle2265

7637 ACUACGCCGAAUCCCGGGGCCGAGGGAGC

1 no match

7638 AUAACUAGUAGCGUACCAUGUGAC

1

0 transposon

LTR

gypsy67639 GUGGAGCGGGCGUGGAAUGCGAGUG

1 no match

7640 GCGGAGCGAGCGCACGGGGUCGGCGGC

1 no match

7641 AGGGAGCGAGAGAGCGGAGAGCGC

1

0 transposon

DNA7642 UGUCAGAAUUGAGUAUAGGGGCGA

10 ncRNA

7643 GGAUAACUGUGAGGGGAUCCUCAA

1 no match

7644 CAUAUCCGAGGCCCUGUAAUUGG

10 ncRNA

7645 UGCUCUCGAAUGCUUUCCCGAUAUA

1

1 transposon7646 AUUCCGAUAACGAACGAGACUCAAAU

1

0 ncRNA

7647 ACCCUACUGAUGAUGUGUUGUUGCCAU

1 no match

7648 AGGUUAGUUUUACCCUACUGAUGAUGU

1 no match

7649 CGUAACUCAAACGUCGAGCAUGAAG

1

0 transposon

7650 CUAACUACCGUGACAGUGAUCGUG

1

0 no annotation

7651 GCCCAACCUCGAGACUUAUAGACU

1

0 transposon7652 AAACGUAUCCACAUUCGCUGAUGACAC

1 no match

7653 CAAUAACAGGUCUGUGAUGCCCUUAGA

17654 UGGCCACACUGUCUCCUCCUGAGUA

1 no match

7655 GUUUCCAUGAGCGAGCGGGACGU
7656 GAUCGUCCUGAAGCAAUCCCGUCUCU

1360
rRNA
rRNA

LINE

R1-element
rRNA

LINE

R1

LTR

gypsy40 ncRNArRNA

1

0 coding gene

CG14690-RA¦tomboy20

1

0 coding gene

CG13394-RA¦CG13394

7657 AAGAGCUAUAAAGAGUUUUUUGCCG

1

0 no annotation

7658 CACGGGAAAAACUUACCAGGUCCGAA

1 no match

7659 AAAACGAGAACUUUGAAGGCCGAAGU

1 no match

7660 CCGAACUUGAGACCGCCCCUGGACU

1

1 Su(Ste)

Su(Ste)7661 UCCUACGCCCUCUUCGCCAUCGCCACCA

1

0 coding gene

CG5554-RA¦CG5554

7662 CGGAACGAAACGGCCUUUUUCUAAU

1 no match

7663 CAGGAUUGUAACUCGCGCGAUGGGC

10 ncRNA

7664 AAGACAAUUAUCCGAUACCGCUUGU

1

1 transposon

LTR

flea

7665 CGCCUCGGACGAACACCAUUGGGGGGUAG

1 no match

7666 CAAGCUAGACUAUGUGUCCCCGGGU

1

1 transposon

LINE

Doc

7667 UUUGCAAAAAACGAGAGCGAUAGA

1 no match

7668 ACGGACCCAGCUGAGCGAACAGUAUG

1

0 coding gene7669 UACCAAUCCCAAUUAGGCGAACCGA

1

0 transposon

7670 GUCGUCAACGAGAGAUGCUGUCCUACCA

1

0 coding gene

CG6995-RA¦CG6995

7671 AGCGCCGAGAACUUGAACCCGAACGCAC

1

1 coding gene

CG4528-RA¦snf

7672 AUUGGGUGUAGCUACUUUUAUGGC

10 ncRNArRNA

7673 GUACGGCAUGCCUGAGGUGGAUGA

1

0 coding gene

CG6259-RA¦CG6259

7674 AUUGAUCCAGCUGCUUUUGUUGU

1

0 no annotation

7675 AAAACCUGAAGAUGAUCCUGAGUCGCCU

1

2 transposon

7676 GCCGAAAAUACGACGACCCCAAGAUC

10 coding gene

7677 AAUCAUGCCCGACGGGGCGCUGACCCCCC

1 no match

7678 CGCUUUGAAACCGAAGAGACGCCGG

1

0 transposon

LTR

G4

7679 CCCAGAUGCCUCAGGUUGCACCCAU

1

0 transposon

LINE

R1

7680 GAAUCUAUGGGUGGUGGUGCAUGGCCG

10 ncRNA

7681 GUGGCUAACACAAAUCUCGUACCAGGG

10 transposon

7682 UGCCUCAACAUUUGGUGACCUCGA

1

0 no annotation

7683 UUAACAACGACAGGGGUACGUCAU

1

0 transposon

7684 GAAUGUCCGGACAGCUGGGCCCGA

1

1 Su(Ste)7685 AUGGUUGCAACGGUAACGGGGA

1

2 no annotation

7686 AGAGCCCAGCGCCGAAUCCCCGCCCCGC

1 no match

7687 AACCCAGACCGUCAGCUAAGGUCCCAA

1 no match

7688 UUGUAAAUUUGACCCCCUUCUUAGACU

17689 ACCCUGAACUCGCCCGAUCUCGUC

1 no match

7690 AGAGACGAGAACGCGUAUGUGUGCGUGA

1

7691 GCCGAACGUAGUCUCUCGGAGAGCGA

1 no match

7692 UUUGCAAAAACGAGGGCGAUAGAGC

17693 UUCGAGAAGCGAACCCGGCGAACU

1 no match

7694 AAGCCACUCGAGCAGAAGGCCUCCGA

1

2 coding gene7695 GUGGCUUUGAGAGGCGCCGUAGUUAC

1

0 no annotation

7696 GAUUCGAAAUCAGAUUCCCUUUGGG

12 ncRNAtRNA

7697 GAUCACGAGUUAGUCGGUCCUAAGUU

10 ncRNArRNA

7698 AGACAACCAGAGAUCUAGAGGGCCCAA

1

0 no annotation

7699 GUUAGACGAAGAGACCCCGUGCA

1 no match

7700 AGUUUCAUCGUUAGACGGCUCGGG

1

1 AT-chX

AT-chX-B

7701 UCGUUAUAUUGGUUGAACUCUAGAU

1

0 ncRNA

rRNA

7702 AAAAAGAUGAAGAAGACGUCGACG

1

0 no annotation

7703 UCGGGAUAAGGAUUGGCUCUGAAA

1

1 ncRNA

7704 UAAGGAUGAUAAGGAUGAUGAUACC

1 no match

7705 ACAUUCAUAACCGAGCGACUGUACAAU

1

1 transposon

7706 UGUUUCAUCGUUAGUCGGCUCGGG

1

1 AT-chX

7707 UAUUCUGUGGAAGGGGGACCGGGAC

1 no match

7708 CGAAAAUGCAGACCUAUUGUCAUCCGG

17709 ACUCGCCGAAUACCGGGGCCGGGGGA

1 no match

7710 UGACAUCAUUCAGCGAGCACAAUCAAU
7711 AAAUAAUACAAACAGAGUUCCCGAAUGA

pseudogene

CG10859-RA¦CG10859
LINE

LINE

I

HelenaCG18743-RA¦Hsp70Ab

rRNA
LTR

G4

LINE

Rt1b
Su(Ste)0 transposon

DNA

1360

1 transposon

DNA

FB

1 transposon

LTR

micropiaCG32236-RA¦CG32236

rRNA
LTR

GATE
AT-chX-B

0 transposon

LTR

flea

1

1 transposonLow̲complexity

F-element

1

0 transposon

LINE

Cr1a

7712 GAAGAGAGAUGCCCAGUGAGUUU

12 transposon

LTR

ninja-Dsim-like

7713 UUGCACGAAAUGUCGUUACCGAGAA

1

0 transposon

LTR

copia

7714 AGAGAGCAUGUUGUUGCGGGAUCCCC

1

0 coding gene7715 UGCGAGAUGAACCUUUAGAGCACGC

1

1 transposon7716 ACACGGGAAACUUACCAGGUCCGAAC

1 no match

CG8712-RA¦CG8712
LTR

GATE

7717 UUGAUUUCCAGGGACUUUCUCCAA

1

0 transposon

LTR

Rt1c

7718 ACCCUUGAUAAACGGUUGGCUUUC

1

1 transposon

LINE

Rt1b

7719 AGAAGCCGUCGAGAGAUAUCGGA

1

0 ncRNA

7720 GAGAGGCGCCGUAGUUACCACCCCA

1

0 no annotation

7721 AAAAUCCCCCGGCUGCGACCUUAUAA

1

0 transposon7722 GCGGAAAGACGGAAAGACCCCAUGAACC

1 no match

7723 GGUGCGAGAGGUCCCGGGUUCAAAUCC

1

0 ncRNA

7724 CGGGAUAAGGAUUGGCUCUGAAA

1

1 ncRNA

7725 AAGAUUAUAAAGCCGAGUGUGUCG

1

0 transposon7726 UCUCAUCGUCGUAGAUCAAGCCCGA

1

1 Su(Ste)7727 AGCGAAUGGCAUCCGGAUGAGAAAU

1

1 transposon

LTR

flea

7728 ACAACACAUCGAGCGACCGCGUAGUC

1

0 transposon

LINE

Doc3

7729 CAAACUAUCAUGGAAUUGCGCCGGU

1

0 transposon

LINE

Doc4

7730 CAACGGGAUACCUCAUACUCGAGUA

1

0 transposon

LTR

micropia7731 GGGUGUUGACGCGAUGUGAUUU

12 ncRNA

7732 UACCCCGGAAGUGAUCAUCGAG

1

0 transposon

LINE

F

7733 GAUUCCGGAGAGGGGAGCCUGAGA

1 no match

7734 CCGUACGCUCGAUGAUCGUCCCAGACU

1 no match

7735 CAACGUGCGAGAGGUGCAGCCAAU

1

0 transposon

LTR

ninja-Dsim-like7736 CAACCUAUCCAUCAACCCAGACGAG

1

0 coding gene

CG18743-RA¦Hsp70Ab

7737 CUUGUACCGACGACAGAUCUUUC

10 ncRNArRNA

7738 UCAACGUGUGAGGGGAUCCUCAA

1 no match

7739 GAUACUCGAAGACACCACGGUGAAAGU

17740 CGUCGAAUUUGGGUAUAGGGGCGAA

1 no match

7741 CGCGACCUCAGAUCAGACGUGGCGACCC

1 no match

7742 CAAGAGCGUACCCAACUCUUAUGGG
7743 UAAACCUCAUCCGCGUGGCAUCUrRNA
Low̲complexity

F-element
tRNA
rRNA

LTR

diver2
Su(Ste)rRNA

0 transposon

LTR

ninja-Dsim-like

1

0 transposonLINEaccord2

1

0 no annotation

7744 AACCGAUAUGGUUGGACCACAAUCCUU

1

1 ncRNA

7SLRNA-RA

7745 AGAAACCUCCUGUGGAGCAGAAGGGC

1 no match

7746 AUAAGACCUCUGUUCUGCUUUCAUUG

10 ncRNArRNA

7747 GGCUUUUGAGAGGCGCCGUAGUUAA

1 no match

7748 UCGGCCAGCGUGGAGAUAUUGGGU

10 coding gene7749 GCAUCAGUUAAAGGCGAAUCGCCCGA

1

0 transposon

7750 UGCCGCGUGAGUGAUGAAGGCCCUAGG

1 no match

7751 UGCUCCAGCUGCUCCUCUUGUCCGC

17752 AGGUAACUAGGAACCGUACCCCAAACCGA

1 no match

7753 UUCCGGAGAGGGAGCCUGAGUAAAC

1 no match

7754 CAGCCCGUGGACGGUGUGAGGCCGGU

1 no match

7755 UAACCAAGGACGUUCACACGAGGG

10 transposon7756 UCGGGAUAAGGAUUGGCUCUGG

1

1 ncRNA

7757 CCCCAGACACCGACCCGUGAAUACCCC

1

0 no annotation

7758 UGAGCUCCAAACGGACAUGACCGACC

10 coding gene7759 CGAACAAUGAGGCCGUCACCCAAA

1

0 transposon

LINE

Rt1a

7760 UAGUACUAAUAGCCUGAUUGAUU

1 no match

7761 UAAUGGUAUCCGAGUCGUACUCUG

1

1 transposon

LTR

springer

7762 UCCGAAGAUAACGAGGAGCAGAGU

1

1 transposon

LTR

7763 GAUACUGAAACGAGUUGGCAUUCUU

1

0 transposon

DNA7764 UGUUUCAUCGUUAGACGGCGCGGG

1

1 AT-chX

7765 CACUUACUGACGAGAUCGGCGCGA

1

0 transposon

DNA

Ivk

7766 UUGAAGGCCGAAGUGGAGAAGGGUUCC

1 no match

7767 GAAGGCCCGCGGCGGGUGUUGACGC

1 no match

7768 GGAUCUCAACUGUGAGGGGAUCCUCAG

1 no match

7769 GACCGGCUCCGGGACGGCUGGGAAGGCCCG

1 no match

7770 AGUCGCGAAAUUGGUAUCCCCGAU

1

0 transposon

LTR

diver27771 AGCGAGAUAAAGCGAAAACCGUCAAA

1

1 transposon

LINE

G6

7772 CCAGUCGUAGUCCGGAUCGCAGUCUG

1 no match

7773 AAAGCAAGACAGAGUUCACCAUG

17774 AUAUUCCCCAUGAACGAGGAAUUCCCAGU

1 no match

7775 CGACACAAAGCCGCUCCAUCAGCCAGC

1

0 coding gene

7776 UACGAGAAUAUACCGCAAACCACAGUC

1

0 transposon

7777 AAGGGAAAUAAAGAGAAACUCGAAUA

1

0 coding gene

CG40124-RA¦CG40124

7778 CUGUAACAACUCACCUGCCGAAGC

1

1 ncRNA

rRNA

7779 UCAACUACGAAACUCAAACUCCCGGACA

1

0 no annotation

7780 CCACCCGAAAUGCGCGCUUUUUA

10 transposon

DNA7781 UGAACCGAGAAGUUAAGCCGACGAAUCA

1

0 transposon

LINE

Cr1a

7782 CACCGAGAUGACGCAACACGAAC

1 no match

7783 ACCACCCUGAACGCGUCCGAUCUCGUC

1 no match

7784 GUAUUCGAGACCCAACGGCACGUGAC

1

1 transposon

LINE

INE-1

7785 UCUGGGUCGGGGUUUCGUACGUAG

1 no match

7786 CCCUGGGUUUUUUCCAGCUCGCCCCCCA

1 no match

7787 AACAACUAACUGGAGGACCGAACCGACU

1 no match

7788 CAGUCGCGAAAUUGGUAUCCCCGG

1

1 transposon

LTR

diver27789 ACCCUACUGAUAGAUGUGUUGUUGCC

1 no match

7790 AAAAACCGAUGCGAUCCGGAUU

1 no match

7791 UUGAUAUGGCCAGCUACCACCCAC

1

1 Su(Ste)7792 AAAACCAAUAUGGACGUAUGGAACGGU

12 transposon

LINE

Porto17793 AACUACUUCAGGGACCGUGUGUUA

10 transposon

LINE

Rt1a

7794 UCUGCGAGAAAACGUACGCAUCGG

1

0 transposon

LTR

3S18

7795 CGACUCUUAGCGGUGGAUCACUCGGC

1 no match

7796 AGCAAUAUGACAGCGUGAUCCUGG

1

1 transposon

LTR

Rt1c

7797 UAGUCCCGAAGAAACCUAAACCA

1

0 transposon

LTR

opus

7798 CGAGGGUGCAAGCUAGACAUUAAAA

1

1 transposon

LINER1-element

7799 GCUCUCGAAUGUAUGCCCGAUA

1

0 transposon

LINER1-element

CG7762-RA¦Rpn1
LINE

0 coding gene

RR49783
CG30460-RA¦CG30460

LTR

opus
rRNA
pseudogene

297
RR51476
AT-chX-B

2 no annotation
CG4027-RA¦Act5C
LTR

gypsy121360

Su(Ste)7800 CCCAGCUCGGGGGAGGUAGUGACGA

1 no match

7801 GUGGAGCCGGGCUGGAAUGCGAGUG

1 no match

7802 UGAUUCAUCGUUAGACGGCUCGGG

1

1 AT-chX

7803 ACGGACGGACGGACGGCGAGGCC

1

0 transposon

LTR

micropia7804 GAGGUAACGAUGGAGUUUUGACGGUC

1 no match

7805 CACAACAACAUCCCGGGAAAUGAGC

1

0 transposon

LINE

Fw2

7806 GAAGAUAUGAAACCGACUCAGGUAG

1

0 transposon

LTR

Rt1c

7807 GGAUCCCAACUGUGAGGUAGGUUGUAU

1 no match

7808 CCGCGUCCCAUGCUAAACUGUGGCCAG

1

0 ncRNA

snoRNA

7809 UUCGGAAUGCCGGGGCGAGGAGGA

1

0 Su(Ste)

Su(Ste)7810 GGUGCGCCGCGACCGGCUCCGGGACG

1 no match

7811 AGCACAAGACCGAAGCUGAUGACUGAUG

1 no match

7812 AUAAAUCAAAACCAGUAUUCACCGCGUU

17813 AUUCGUGAUGGGGAUCGGGGAUU

1 no match

7814 GUGUGCUAUACCGGUAAUUACCGCUGG

1

0 no annotation

7815 CAACCCCGCCAGUGACGUAUGCAA

1

0 transposon

7816 UGCGAUUCCGGCGCAGGUGACUCC

10 ncRNA

7817 UCAAAUGAAAUGGACUCAGAGUC

1 no match

7818 GGCAUAAAGAGACAAUUGACUGUACC

1

1 transposon

7819 AUGCAAGGGAACGUGAGCUGGGU

10 ncRNA

7820 UAGAUGUGGAAACCAGGGGCAUAUA

1

0 transposon

LTR

7821 UAACAAGAUGCAUACGAUGUGGCUCAA

1

1 transposon

DNA7822 CAGUUCAUCGGAGUGCUCGGAGG

10 coding gene7823 AUGAUUAGAGGUUCCGGGGUCGAAAU

1 no match

7824 UGCUAGAAGACGAUUUUCGGGCGGA

1

0 transposon7825 UGAGACUACAAACGGAUUGCGGACA

1

1 no annotation

7826 GGUUCCGGGGGGAUAUGGUUGC

1 no match

7827 GCACUGCGAGCGUUCGAGUCGUUAACGA

1

0 coding gene7828 CACAUCAACAGGAAGCGUAUCCAGGCC

1

0 transposon

LINE

G2

7829 AGUCCCCAGGAUUUUGACGCGACU

1

0 transposon

LINE

BS3

7830 UACAGAGAAAUGGCAGAACACGCUGU

1

0 transposon

LTR

micropia7831 GCAGUUAUUACGACGAGAAGAUGGCC

1

1 transposon

Unknown

RR50960

7832 CCUACUAAUACACCUACAUACACCUGCC

10 Su(Ste)7833 UCCGGACAAACACACAAGACCCGAUA

1

1 transposon

LTR

7834 AAAGAGAGUAAUUUUGGCCGUCAAC

1

0 transposon

DNA7835 GAACUGGGAAGGUGGGACUUGAGUU

1

0 transposon

LINE

G2

7836 CGAAUAGUGAUUGCGAACCCCCGAAUC

1

0 transposon

DNAS7837 GAUCAAGAAUCCCGUGCCAAGA

1

0 transposon

LINE

Circe

7838 UGGCCGAAGUAUUCAACCGCAUUUGCG

1

1 coding gene

CG5757-RA¦CG5757

7839 GCUGAACCACUUUCAUGCUUGGGAUU

10 ncRNArRNA

7840 GUUCGAGCCCAAGUGCGUCCACC

1 no match

7841 UCCGGUCCCGGGACAUGGCGUGGUGGGUA

1 no match

7842 UUUCGAACCAGAGGCUGGGUACAUCGC

1

0 no annotation

7843 ACCGAUAUCCCCCAGGCAAAUGAU

1

0 transposon

LINE

INE-1

7844 CACUGCAAUACUAAGUCGACCCAGG

1

2 transposon

LINE

Doc3

7845 AGCAGUCGUGGCCGAGCGGUUAAGG

1

0 ncRNAtRNA

7846 GUCAUGCGAGGCGAACCGGGUGA

1 no match

7847 CUCAACUGUGAGGAGGUAGUAGGUUGUAU

1 no match

7848 GACCGGCUCCGGGGACGGCUGGGAAGGCCCC

1 no match

7849 CUGGGAAUACCGGGUGCUGUAGGCUU

1 no match

7850 UCCUCGAUAAUAUAGUGGUGAGUAUCCC

12 ncRNAtRNA

7851 AAAGUUCAAUAUCCCAAAUUCGGCGUGA

1

1 no annotation

7852 UCAAAACACACAACACACUCCCAUC

1

0 transposon7853 AGCGGCGGCAUUGGCGUUGAACCCGGC

1

0 coding gene7854 ACUCGCCGAAUCCCGGGGCCGUGGGA

1 no match

7855 ACGAGUAAUAUGAGCGCCCCAGAGU

1 no match

7856 AAAACCUGAAGAUCGAUCCUGUAGUCGC

1 no match

7857 GGCAAAUGCUGACUUGAUCUCGGU

10 repeat7858 GAUACUUUUAUCAGAGGCCUUCGAG

1

0 transposon

7859 CAGUACUAUGUGUCCUGCGUGU

1

1 coding gene7860 ACUCGCCGAAAUACCCGGGGCCCGAGGGA

1 no match

7861 AGGACCAUAUCCGAAGACGCGGCGC

17862 AAGCACGGGAGACACACGGCGGGUGCU

1 no match

7863 CGCCUUGCGUGUUACGGUUGUUUC

1

0 ncRNA

7864 UAAAGAAUCCUGACAAGAUCCCGA

1

1 transposon

7865 AACGAGGAUGGGAAUGUGAAUGUGG

1

1 no annotation

7866 GCUGGCGACGCUCGAAGUACUAUCG

1

1 coding gene

CG12142-RA¦Tsp42Eg

7867 AUCCUCAACUGUAAGGGUAUCCUCAA

1 no match

7868 CCAGCUCGGGGAGGUAGUGACGAAA

10 ncRNArRNA

7869 AUCCGAAGAUAAGUGCAGUUGGAAA

1 no match

7870 AACGUAACAAAAAAGCUGGGUCGA

1 no match

7871 UAAUAAACUUGACCAUGUUUCCCCCGGG

1

0 transposonLow̲complexity

F-element

7872 CUUGAUUGCGACGGACUUAGGGAAA

1

0 transposon

LTR

HMS-Beagle

7873 UUUCAUCGUCGUAGAACAAGCCCGA

1

0 no annotation

7874 AAGGAUUGACGGAAGGGCACCACC

1

2 ncRNA

7875 GCCGAACGUAGUCUCGAGAGCGAG

1 no match

7876 GUUGCAAGAAGUGCGACCGAUCCCAC

17877 AAACGCACCAGCGCCCAUGGUACUGU

1 no match

7878 UAUUAUUAAGAUGGGCUUGUAGG
7879 UGAUCUUCCAGAGAGCGUUUACCGU

0 transposon

0 transposon

AT-chX-B

LTR

IdefixLINEDoc
pseudogene

LTR

Dm88
rRNA
invader6
1360
CG33957-RB¦cp309

DNA

1360

CG2727-RA¦emp

Su(Ste)

LTR

opus
1360

Dm88
CG3788-RA¦CG3788

LSU-rRNA̲Dme
LTR

HMS-Beagle
CG4033-RA¦RpI135

LINE

Rt1b
rRNA

LTR

invader1

rRNA

0 transposon

LTR

GATE

1

0 transposon

LINEbaggins

1

1 transposon

LTR

Idefix7880 CCGAAGAUGACCAAGUUGGCUAC

1

0 transposon

LTR

gypsy67881 CAAACAGUUAAUCUUGACAUUCGAGA

1

0 transposon

LTR

invader37882 AGCUUCAUCCAAGCGAACUGUGCCCGAC

1

1 transposon

LINER1-element

7883 UUCAACGGAUUGGACGACGUCGG

1

1 no annotation

7884 CUCUGAGAAAGCGGACGCGUGAA

1

0 transposon

7885 CCGGGAUGGACAUACCUCUGGUGUACCUA

1 no match

7886 UGUUUCGAAACACGGAGUUAACGAUC

17887 GAACUUGAGACCCAACAACGCAACCGA

1 no match

7888 ACCUGGGAAUUGCAUCUGUGACU

1 no match

7889 AUUAAAACAUCCCUACCCGAAAGCACAC

17890 CAACCAGAGAGCCUACCAACGUGGUGA

17891 AAAAUACUUCAAACCAGCAUCUAGCC

LTR

invader6

0 transposonLow̲complexity

F-element

0 transposon

LTR

ninja-Dsim-like

1

1 transposon

LINE

Cr1a

7892 GGCUUUGAGAGGCGCCGUAGUUACCAA

1

1 no annotation

7893 GGCUGCCAAGAAGGUCCUCGACGGUUU

1

1 coding gene7894 GAGAGGCGCCGUAGUUACCACCCCAC

1

0 no annotation

7895 UUCACAAAGUCGGAGACACCCAUAAGG

1

1 transposonLINEaccord2

7896 CCGAGAAUAACGGAACUACAGAAGAGCAA

1

0 transposon

LTR

HMS-Beagle

7897 AGCCCGUGGACGGUGUGUGGCCGGU

1 no match

7898 CGAGAUAGUACGAAUCGAUUACGUA

1

1 transposon

LINE

I

7899 UUCAGAGAUUCUCGAGCUUCAGUCG

1

0 transposon

LTR

ninja-Dsim-like

7900 UAGUACGAGAGGAACCGCAGGUACG

1

0 ncRNA

7901 UGCUCUCGAAUGUAAGCCCGAUA

1

1 transposon

7902 AGCCAAGAGUUCCCGUGGUAGGCAGUAG

10 ncRNA

7903 GAGGUCUCCGGACGUGAUCACUGUG

10 ncRNA

7904 UGCCCGGGAUAGUCCUUUCGUUUAGC

1

0 transposon

LTR

springer

7905 UAGACUUAAGAUGAUGAACCCAUA

1 no match

7906 GCAAACCGUAAGACCCAGGCUGUGG

1

1 transposon

LTR

ninja-Dsim-like

7907 AGCCAGUUACCGAAGCUGCGGAUUU

1 no match

7908 AGAGGAGAAGGUGGCUUUGAGA

1

0 no annotation

7909 UGCGAAAUAAUUGCCAGAGUCACCGGA

1

0 transposon

LTR

Quasimodo

7910 UGAGGAGUACCCGUUUCCCGACCUGCGUA

1 no match

7911 AGGAUCCUCAACUGUGAGGGGGAUCCUCAA

1 no match

7912 UCCAAUAUCACCGCGGAGACUGUCGUC

1

1 transposon

DNA

7913 UAACAAGAUGCAUACGAUGUGGCUCCA

1

0 transposon

DNA7914 ACCGACAAGAACUGCUCAUUCCGAACA

1

0 transposon

LINE7915 UUCAAGGUUACCCCAGGAUGCUGUGUC

1

1 repeat7916 UGGCGAGCGAAACGGGAAGAGCCCAAA

1 no match

7917 AUCGAUUCUGAUCGGACGGAGAGGG

1

0 no annotation

7918 AGGCCCGUAUAACGUUAAUGAUUA

10 ncRNA

7919 AGGCCGUGAGUUCAGCCCUCACAGGA

1

1 ncRNA

7920 UGUGAUAGAAGACGAUUUUCGGGCCGA

1

0 transposon

7921 CGAGGAGAUGUACCAGCUGACCGUG

1

0 coding gene

CG9124-RA¦eIF-3p407922 AACGAACGAGACCUUAACCUACUAA

1 no match

7923 CUCAACUGUGAGGGGAUCUUCAA

1 no match

7924 CUCCGGGGGAAGUAUGGUUGCAAA

10 ncRNArRNA

7925 GUGGUGGGGUGUGGGGGCGGCUGGAC

1 no match

7926 ACUCGCCGAAUCCCGGGGCCAGGGAG

1 no match

7927 CAAAGGAUACUCGAAGACACCACGG

17928 CAGCACACGUAUUCCUUCCACUUCUCCUC

1 no match

7929 AAGAUCAAGAAUCCCGUGCCAAGACUGC

17930 ACCACCCUGAACGCGCCGAUCUCGUU

1 no match

7931 UUCAACCAGAUGGGCCUGGAGUA

10 Su(Ste)

7932 CAGUAUACGAGUCAUGUGCAGCAU

1

1 transposon7933 ACGGAUGGAAUCGAGCGCUGAGUAG

1 no match

7934 UAUUUCAUCGUUAGACGGCUCGGGCG

1

1 AT-chX

7935 CACAUUCUGAUUCUGAUUCGAGUUC

1

0 transposon7936 GGGCCUCGUGCUCAUCCUGGCAACAG

1

0 ncRNA

7937 GGGUUCGACUCCCGCUCGGUGUACCA

1 no match

7938 AACCCUCUAAUUCGGCCCGAACCC

1

0 transposon

LINEbaggins7939 CAUGUACCGGAGGUACGGUUCCAGA

1

0 transposon

LINE

R1

7940 CAAGAUAUGACCAAAGCAAAGAAAA

1

1 transposon

DNA7941 AUCCGAGGCCCUGUAAUUGGAAUGAG

1

0 ncRNA

7942 UCCGUACUGCACGUGGAGUUGUUAAA

1

0 transposon

LTR

GATE

7943 ACGCAUCCUAGAAUCGACCGACC

1

0 transposon

LTR

flea

7944 ACCUUGAUAAACGGUUGACUUUC

1

1 transposon

LINE

Rt1b

7945 AACCGCACUGAGGAGCUAACCGACAA

1

1 coding gene7946 UCGAGUUGCAGAAUUGAGGACCGC

1

0 transposon

7947 GUAAGUGGAGAUGAGCCAGGGCAA

1

0 coding gene

CG7143-RA¦DNApol-eta

7948 CAACGCCGCCAGAUCAUCCUCAACAUC

1 no match

7949 CGGGAUAAGGAUUGGCUCUGAAGG

1

1 ncRNA

rRNA

7950 AUAGAACAUAGAACCAGAUGUCCUAU

1

1 repeattrf

7951 GAGGACUUGGGCGAUUUAAGUGGC

10 Su(Ste)7952 AAUACCGUGCUGAAACCCCUCUG

1

0 transposon

LINE

Doc2

7953 AAGGAAAUGAUAGAACAAGGGAUUGU

1

1 transposon

LTR

Idefix7954 CAAGAUAUGACCAAAACAAAGCAAC

1

0 Su(Ste)7955 GCCAAUCACAUUAGACGAGACGGCCC

1

1 transposon

LTR

opus

7956 GGCGUUCGAGAGAAUCAUGGUUAAGGAA

1 no match

7957 GCCGAUCACAGGUCCGCACCUUCGC

1

0 transposon

LINER1-element

7958 CAGUACUGUAAACUGACCUAAGG

1

0 transposon

LINE

Doc3

7959 GAUUCCGGAGAGGAAGCCUGAGAAAC

1

1 ncRNA

7960 AAUCACAAAACAAGACAUGACACCA

1

0 transposon

LTR

7961 CCAGAACGAGGUGGUCCGACAAUU

1

0 transposon

LTR

gypsy37962 AUACCACCCUGAACGCGCCCGAC

1 no match

7963 AGCAAUUGACGGUACCGCACACC

1

2 transposon

LTR

Dm88

7964 GAAUCUAUGGGUGGUGGUGCAUG

10 ncRNA

7965 GGUUCGGGCCCUCCUUCUAGCGCCA

1 no match

0 no annotation

CG13168-RB¦CG13168

rRNA
LINE

R1-element
7SLRNA-RA
rRNA

1360
1360
Doc
trf

rRNA
tRNA
DNA

1360

0 transposon

LTR

ninja-Dsim-like

1 transposon

LINE

Circe
Su(Ste)LTR

Rt1c
AT-chX-B

DNAtransib2
rRNA

1360
rRNA

CG8977-RA¦Cctgamma
LTR

Quasimodo

Su(Ste)Su(Ste)

rRNA
297

rRNA

7966 CUCGUGUUUACCCAGAAUGAUGUUGA

1

0 transposon

7967 AAACACAGCCCAACUGCGGACCCAUUAA

1

2 coding gene7968 GAAGAUCAAAAGUUGGCGCCUGU

1

0 transposon

7969 UGAGACUCCAAACGGAUUGCGGACC

1

1 no annotation

7970 ACCCUGAACGCGCCCGAUCUCUUC

1 no match

7971 AAUAGAUCCUGAAACCGCGUGCU

1 no match

7972 UCCGAAGAUAACCAGGAGCAGAGCUGAU

17973 GGAAAACCCAGAAAAAACCCGAUCAGAA

1 no match

7974 UAAUACGUUAUCCCGGCACCAUAUU
7975 GUGUGAAGGCCAAAAACGAAACAACU

Simple̲repeat

I
CG14034-RB¦CG14034

LTR

flea

2 transposon

LTR

297

1

0 transposon

LINE

1

0 coding gene7976 AAAGCAAAAAUAACUCCGAAUUAUGGCAG

1

2 transposon

7977 CUCGGACCUUGAAAAUUUAUGGUGGGG

10 ncRNArRNA

7978 UGUAUACCUAUACAUUACCGCUAAA

10 ncRNArRNA

7979 GACGUCGGCUACCCACCCGACCCGUC

1 no match

7980 UCAACCUGAGAGUUUGGUCCUGGCU

1 no match

7981 CACCAAGAUCAUCAACCCGUGUUUC

1

2 transposon

7982 CCAAGGGCUGUGGUCCUGCUCGGUUC

10 coding gene7983 GCCAAUGAAAACUACACCCAGACG

1

2 transposon

LTR

McClintock

7984 UGAGAGUAGACUUAUUGGUCUGUAAGA

1

0 transposonLow̲complexity

F-element

7985 ACGGGCCUAGAGUUAUUCCCCCAGA

1

0 coding gene

7986 CACGGUAAAACUUACCAGGUCCGAACA

1

1 ncRNA

7987 UCUGCAUGAAGACGAUUCCGAAGA

1

0 transposon

LINE

Circe

7988 GAGACAAACAUGUUCGAGCUACAGCAA

1

0 transposon

Unknown

RR509607989 UUCGAGAACAAACGAUACUGUUCGGU

1

0 transposon

LINE

G2

7990 CGCAAACCUAAAUGACAAUGCACGA

1 no match

7991 UCCAAGGAGUGCGAUUGCUGGGA

17992 UGCUCUCGAAUGUAUGCCCCGAUAUC

1 no match

7993 AGUUCGCCGAAUCCCGGGGCCGAGGG

1 no match

7994 UGAUAUAUAAUGCCAUACUCAGGG

17995 UAGGAACCUGCGGAAGGAUCAUUA

1 no match

7996 GCCUGAUGACUAUAGCAAGUUGGUA

1 no match

7997 AAGGAAAUUAGCUGGACGCCCGAA
7998 UCCAAGCGAACUGUGCCCGAGGCCGA

Cr1a
CG4836-RA¦CG4836

LINE

LINE

Cr1a

Cr1a
CG2127-RA¦CG2127

CG40635-RA¦CG40635
rRNA

0 coding gene

CG2127-RA¦CG2127

0 transposon

LINE

Rt1b

1

0 transposonDNA

hopper1

0 transposon

LINER1-element

7999 AGAAUCUCGACUAUUGCUACUAUCUGCC

1

0 coding gene8000 GGCGCAAAGAGAUGGAUGCCGUGAG

1

0 transposon

8001 UGGUUAAUUCCGAUAACGAACGAGACUC

10 ncRNA

8002 CAAUCCGAUACAUUUCACGCCCGACA

1 no match

8003 AGACCAAACACGAUACUACCGGA

1

0 transposon

LTR

RR502078004 CACUAUUACACGAUAUACCUUGAGGUA

1

1 transposon

LINE

Cr1a

8005 GCAAAACAUAGACAAUGGGGUUGC

1

1 transposon

LINE

G2

8006 GCUUCCGGGAAGAAUGGCAGACCU

1

0 coding gene

8007 UCGAGCGAAGAAGACGAGGACGACCA

1

0 transposon

LINE

G6

8008 AGCUUCAUCCAAUCGAACUGUGCCCG

1

1 transposon

LINER1-element

8009 ACACAGCAUUUGUUACCCGAGAAG

1

0 transposon

LTR

flea

8010 CUCAACUGUGAGGGGUAUCCUCAA

1 no match

8011 CCGCGUCUUGUGGCCAGUGCGUCG

1

0 transposon

LINE

TART-A

8012 GGCCAAGUGAUAUCGUCGGUGGAU

10 coding gene8013 UGCGAAAGUAUAAGAUGUCCAGCGAA

1

0 transposon

8014 AUGGUUGCAACGGGUAACGGGA

1

1 ncRNA

8015 GUAACAACGAAGAUGAUUCUGCCCC

1

1 transposon

8016 CCCAGCUCGGGAGGUAGUGACGAA

1 no match

8017 GUAACUUCGGGAUAAGGAUUGGCUCUA

18018 GGAUCAGCUGUGAGGGGGAUCCUCAA

1 no match

8019 GAUCCUUCUGACCUUUUGGGUUUU

1 no match

8020 AUGCUGUGGACUUCGAGAUGACC

1

0 coding gene

8021 AAAAACCCAUGACCUAAACACGAUUCU

1

0 transposon

LTR

Idefix8022 CAACAAAGCACCAGGACAUGACG

1

0 transposon

LINE

X

8023 CCCCUGAUGAAGAAGAGAUGCCCAGU

1

0 transposon

LTR

ninja-Dsim-like8024 AAUACAUGCCGACGGGCGCUGUACCCC

1 no match

8025 ACGAUCAAUAAAACAUACGCCCGGU

1

0 transposon

LTR

GATE

8026 ACUGUCCCUACCUACUAGUCCAGCCA

1 no match

8027 GGCUCCGGGGAAGUAUGGUUGC

1 no match

8028 AAUAGCGAAAAUUGGCCCAAUCUGAUU

12 repeat8029 UAGUACAAUAGAUCCGACUGGGU

10 transposon

LINEbaggins

8030 CAAGCUAGACUAUGUAUCCCCGGGUCC

1

2 transposon

LINE

Doc

8031 AAGGGACGGUCGGGGGCGAUCAGUAUUC

1 no match

8032 UGGCUCUCUCAGUCGCUUCCCGGGUA

1

1 ncRNA

8033 UGUGCCACCAGGUGUUCAAGUUGUCCA

1

0 transposon8034 GGUUCCUUCCGAAGUUUCCCUCAG

10 ncRNA

8035 GAUUCCGGAGAGGGAGCCCGAGAAA

1

1 ncRNA

8036 ACAUUCGCGAAAAAAGCUCAAGUGCA

1

0 transposon

8037 CAGUCCGAAACACACCCCCCGAUUA

1

0 no annotation

8038 UGUUUCAUCGUUAGGCGACUCGGG

1

2 AT-chX

8039 GGGCGGAGGCGGGUGGCGGGGG

1

2 no annotation

8040 GAACGUGAGCUGGGUUUAGACCGU

10 ncRNA

8041 UCAUUGAGCGAACCCGGGGAACUGAA

1 no match

8042 UGCCGAGCCAUCUGCCAAUCCAGGGACC

1

0 coding gene8043 GCACCAGGCAGUGAUUAGAGAUU

1

0 transposon

8044 GACACGUUCAACCAGAUGGGC

10 Su(Ste)8045 AUACCGUAAACGAAAAACUAAGA

1

1 transposon

8046 UCGUGACGAAGCUCCAAGCGGUA

1

1 coding gene8047 GGCAGCCGAAUCGAUUUGUGAAACC

1

0 coding gene8048 GCUCCCUGGAUUCCACUCGGCGU

10 transposon

CG17349-RA¦CG17349
LTR

ninja-Dsim-likerRNA

CG5405-RA¦KrT95D

pseudogene
LINE

Rt1b
rRNA

LTR

1 ncRNA

invader4
rRNA

CG6527-RA¦CG6527

SAR̲DM

rRNA
LTR

mdg3
rRNA
rRNA

LINE

Doc2
AT-chX-B
rRNA
CG9029-RA¦CG9029

DNA

HB
Su(Ste)LTR

Idefix
CG2759-RA¦w
CG17945-RA¦Mst84Dc

LTR

ninja-Dsim-like8049 AGUGGAGCCGGGCGUGGAAUCGCGAGU

1 no match

8050 GGGCUCCGGGGGAAGUAUGGUUG

10 ncRNArRNA

8051 UUCCCGGACAUCUUCUUCUCGCUGCUG

10 repeattrf

8052 AACCCGACCCCACGAAGCUGGAUUCGCU

1 no match

8053 CCACCCUGAGCGCGCCCGAUCUCGUC

1 no match

8054 GGGGCAUUAGUAUUACGACGCGA

10 ncRNA

rRNA

8055 GCCGAGAAAAUGAACACGAAACGA

1 no match

8056 AAAAACCCUGAAGAUGAUCCUGAGUCGC

1 no match

8057 AACCUUGACUCCGGCGAUCCCGA

1 no match

8058 AUAACCAUGAGACCGAUAGUAAACA

1

0 ncRNA

8059 UCCAAUAUCACCGCGGAGACUGUC

10 transposon

8060 CGCGGUAAUUCCAGCUCCAAUAGCGUA

10 ncRNA

rRNA

8061 GACUGAUUGCCCAUGCUGGCUCGCU

1

0 coding gene

CG10206-RA¦nop5

8062 ACUCGAAUGAGUGCUUGAUAUGACC

1

0 Su(Ste)

Su(Ste)8063 CAAGAAUGUCUAGCCGAAACGAG

1 no match

8064 GCUUUGAUCCAGGAUUUCCGAAU

1 no match

8065 AAUUUUGUUACGAAUUCAACGAGGU

10 repeat8066 GCUGAUUGGCUCAUUAAUGUAUCUG

1

0 transposon

8067 CCCGCAAUAUGACAAUCGCUCGAUG

1

1 coding gene8068 AAAUACCAUAGCAAUCUUCACACGC

1

1 transposon

8069 GUAGCUUCGGGAUAAGGAUUGGCUCU

1

1 ncRNA

8070 ACACAACAACACAUACCCGCUGGC

12 transposon

8071 GAGAGUGGACGGGAGCAGCGGGGGCG

1 no match

8072 AACACUCGUAGAUACCCAACAUGUCCC

1

0 coding gene8073 GCGGAGGCGGUGGCGGCGGAGGCG

10 repeat8074 CACGAUCGAGUCCACGGACAAACCC

1

0 transposon

LTR

blood

8075 GACAGAAACGAGGCCACCGCCGCCC

1 no match

8076 UGUAUAGAUAUUAGGGAAUAUGUAGA

1

1 transposon

LTR

invader4

8077 AACCGAAAACAUAUCACACGCAACUGAC

1

0 coding gene8078 GGAACAAUGUCCGAGUCGGCUCC

1

0 coding gene8079 ACCGAAUUGAUCGCGAGGCUGCAAGA

1

1 transposon

LTR

mdg3

8080 AACUACAAAAUUGCACCCAAAUAUA

1

0 transposon

LINE

TART-A

8081 CUCGGUGUUCAGUACACACAGGG

10 repeat

LSU-rRNA̲Dme

8082 UUGUUCCCCGGAUAGUUUAGUUACGGU

1

1 ncRNArRNA

8083 CCAAAGCUUUGGGCUCCGGGGGAAGU

1 no match

8084 ACCCAAGAUGAUCAGCCUCUAUCCAC

1

0 transposon

8085 UGCACCGAAAAUAUAUGCGAGGAGAUU

10 repeat

8086 ACGGUACCCGGAGAAGAAGCCCCGG

1 no match

8087 UUCAACCGGACGGGCCUAGAGUUAUUCC

1

0 coding gene

8088 CCAACGGGAUACCUCAUACUCGAGUA

1

0 transposon

8089 AGGGAGUUUGACUGGGGCGGUACAUCU

1

0 ncRNA

8090 AACCAAGCGCGGGUAAACGGCGGGAGUA

1 no match

8091 CGCGCGCCAAGGAGCACCCCGUCUUUUCUG

1 no match

8092 ACACCAAUCGCUGAUGAGACACCGGG

1

1 transposon

LTR

accord8093 CGAGCUACGAAGGGAUCUUGGAGU

10 transposon

LTR

ninja-Dsim-like8094 GAACUGGCGCUGCGGGAUGUAA

1 no match

8095 CAGACAAAUACCCUAUGCCAGAU

1

0 transposon

LTR

gypsy38096 CAGGUAGGGAGUUUGACUGGGGCGGUAC

10 ncRNA

8097 GUGAUCGAUACGCCCCCUCAGAGUCC

1

0 transposon

8098 GGAGCAAUCCUGGUGGCGAGUGGCGA

1 no match

8099 UCUCAUCUUCGUAGAACAAGCCCGA

18100 CUAACACGUGCGCGAGUCGGGGCU

1 no match

8101 CGGAGGUGUCCCAAGGCCAGCUCAGU
8102 UGAACGUGUCCUGAAAGUAGUUGG

rRNA
LINE

Doc4

SAR̲DM
LTR

DM88
CG40609-RA¦CG40609

Low̲complexity

F-element
rRNA

LTR

GATE
CG17567-RA¦CG17567(CGG)nCG17618-RB¦CG17618
CG32575-RA¦hang

LTR

gypsy7
trf
CG40635-RA¦CG40635

LTR

micropia
rRNA

rRNA
LTR

Max

1 Su(Ste)

Su(Ste)10 ncRNArRNA

1

0 Su(Ste)

8103 CCCUUACAAUUCCCCUAUCUGGAUA

1

0 transposon

LTR

opus

8104 GGACCCGUCGGACGCCCCCCCAACCCCGA

1 no match

8105 UAAUGCCGAGAGCUGAUGACGAGC

1 no match

8106 CUGGCAUUUAUACAGUGCAUUGGACG

1

1 transposon

LINEbaggins

8107 CAGACACGAACGAAAUUUUGAGUAC

1

2 transposon

LTR

Idefix8108 ACCAACAUGAUGUUUUCGCCGAUGAA

1

1 repeat8109 GACAAUGAGAGGUACUUUGACCAA

1

0 transposon

DNA8110 AUAACAACAACUGGAUGGCCCAUGA

1

0 transposon

LINE

Rt1b

8111 UACAUCGAAAAGCUAGUUGACGUAU

1

1 transposon

LTR

invader4

8112 GACGAGAUAAACCAGCACUCAAGC

1

0 transposon

LINE

X

8113 AAAACCUGAAGAUAAUCCUGAGUCGCA

1

1 transposon

LINE

Helena8114 UCCACAAGGGAGGCGAGCUGUUUGAC

1

0 coding gene8115 ACCCGAAGAUAACUCGCAGUCGCUACA

1

1 transposon8116 UGUUUCAUCGUUAGACAGCUCGGGC

1

1 AT-chX

8117 AGAUCAGUGAAAUCAUCUUCCGUGA

1

1 transposon

LTR

micropia8118 CUGCGAGGUAGCCGAAGUCAUUGU

1

0 transposon

Simple̲repeat

I8119 AACCGGACGAAGGUGGGGAUGAC

1 no match

8120 GAACGAGUGAACUGGCAACAUUUCG

18121 UCAACUGUGAGGGAUCCUCAACUGUGAG

1 no match

8122 ACCGAAACUAGACUAGACAACAAU

1

0 transposon

LINE

G2

8123 ACGGAAUGGAAUCGAGCGCUGAGUUU

12 transposon

LINE

X

8124 UGUUUCAUCGUUAGACGGCUCGGGUG

1

1 AT-chX

8125 UCUGCCCGAUGAGAAGAAUGGCCCG

1

0 transposon8126 AGGAAUAAUGGAAUAGGACCGCGGU

1 no match

8127 CCGCGUGAGUGAUGAAGGCCUUAGG

1 no match

8128 AUGCAGUGACCUUGGAUGAUGCUCUGG

1

0 coding gene8129 AAAAACCUGAAGAUGAUCCUGAG

1

1 transposon8130 GCCGUUACGAAAACACCGUUUAAG

1

0 no annotation

8131 AACCCAAGCUUUUGGGCUCCGGGGGAAG

1

1 ncRNA

Su(Ste)trf
1360

CG3492-RA¦CG3492
LTR

GATE
AT-chX-B

1 Su(Ste)

Su(Ste)AT-chX-B
LINE

RR49783

CG4750-RA¦loopin-1
LINE

HelenarRNA

8132 CGCUCAACUACGAAACUCAAACUCCCGG

1

0 no annotation

8133 UGUAAACGGUAGCUAAUUCGAGCGUC

1

1 transposon8134 UCAUCACCAGGAGUUCGUCUUUA

1

1 no annotation

8135 UGCUCUCGAAUGUAUGCCGAUAUU

1 no match

8136 CCUGACUUUAUGCCCCAGUUUUUCCAG

18137 GUGGCGGCGACGACCCAUUCGAAC

1 no match

8138 AGUCCUGAGAAAUCUUUAGAAAAUGAU

1

8139 GGAUCCUCAACUGUGAGGGGAUCUCA

1 no match

8140 AGUUGAGAUUAUCGCCAAUGACCAGG

1

1 coding gene8141 UGCACUAAUAUAAGCCCUGACGUCCGUA

1

1 transposon8142 UCAUGACCGAAAUUCGGAAAAACGAAUU

1

0 repeat8143 CCGGUCCCGGGACAUGGCGUGGUGGGUAG

1 no match

8144 ACCCUUGAUAUACGGUUGACUUUC

1

1 transposon

LINE

Rt1b

8145 CAUGUCAUAACAACUAAACCCGAAGA

1

0 transposon

LTR

Quasimodo

8146 GACGUUAAUGAAGAUGCCGUGGUGC

10 coding gene8147 CUUAGAAGCAUUGGGCCAAACCGA

1

0 transposon

8148 UCCGGGAGACACCAAUGCUGGCCAAGU

1

0 coding gene8149 AGGUAGGGAGUUUGACUGGGCGUAC

1 no match

8150 AGGACAGAGACGCCUAAGCUAUUCGGC

1

0 transposon

LINE

X

8151 UAGAUCAGUCACAAUAAAUACUUGA

1

0 transposon

LTR

DM88

8152 UACUGAGACAUAGUGACAUCGGCC

1

1 no annotation

8153 UCCGAAGUGACCGACCGAAACAGUC

1

0 transposon

LTR

diver28154 CGCUACAUAAGAAAGCCGACAUCCCGA

1

0 transposon

LTR

GATE

8155 UGUUUCAUCGUUAGACGGCUCUGGC

1

1 AT-chX

8156 UCCCCAUACGGUACAUGGCCGCGAGGA

1

0 transposon

LINE

F

8157 CAGUUCAUCAAAGCGCCUUACUGGAGGA

1

0 transposon

LTR

flea

8158 GCACACAGAGGAGAGCAGAUGAGAACA

1 no match

8159 UGACCACCCAUACAAAUCCCCCUCGC

1 no match

8160 UCCGAGGAACCAAUUGAUCCAGCUGCUU

1

0 no annotation

8161 UCAUCAUCAAUGACCGGCCAGCCAG

1

0 transposon

LTR

springer

8162 GAACCAUCAGACGCCUCCAGAGGAU

1

2 transposon

LINE

G

8163 GGCUAAAACCAAGCGAUCGCAAGA

1

0 ncRNArRNA

8164 GUAGUACGAGAGGAACCGCAGGUA

10 ncRNArRNA

8165 CCCAGAAACACAGUGUUUGACGCCUG

1

2 coding gene

CG18743-RA¦Hsp70Ab

8166 UGCUCGAUCAAAAGGCCCUGGCAU

1

0 no annotation

8167 CGCUCACCCAGACCAUGAAAACUUCG

1

2 transposon

8168 GGAGACAAGAUGCCAGAUGUACCAAU

1

0 no annotation

8169 UGGGCACGAGGGCUAUCCGGGCGAGCU

1

0 coding gene8170 UGCUCUCGAAUGUAGUGCCCGAUA

1 no match

8171 UUCAAAGUUACCCCAGGAUGCUGU

18172 CCGCCGAAUCCCGGGGCCGAGGGAGC

1 no match

8173 UUCGCCGGAGACGGGAACGGCUGCUGA

1

0 transposonLow̲complexity

F-element

8174 UUUGUACGAGAGGCUUUAAGAGA

1

1 transposon

LTR

invader1

8175 GAGGAACUGAGGAACGCAUUUCAAA

1

0 transposon

LTR

diver28176 UUCCCCACCUGCGGUCCGGCGGCAUUCC

1

0 coding gene8177 CGUUGACCAAUUUGCGAACAUACGCC

1

1 transposon

LTR

DM88

8178 AACCUAUCGGACGACGCAGCGCAU

1

2 transposon

LINE

Quasimodo

8179 GCCGAAUUUGAGACCCCAGCCGCUCC

1

0 coding gene

8180 GCCGAACGUAGUCUCUCGAGAGCGAUA

1

1 transposon

LTR

invader1

8181 AGGAACCAUCACUGGGGCACCGUGG

1

1 transposon

LINE

F

8182 ACCACCCUGGACGCGCCCGAUCUCGUC

1 no match

8183 CAACUGUGAGGGGAUCCUCUAA

1 no match

8184 AAGAGAUGGGGAAGCUCCGUUUC

1 no match

8185 GCAGCAUAUCUCGGCAGCCCGCGGU

1

1 transposon

Simple̲repeat

I

8186 CAAGCUAGACCAUGUGUCCCCGGGUAA

1

2 transposon

LINE

Doc

8187 UCGCGGGACAACUGGGCCGAGGC

10 coding gene8188 CUAGCCGGGCUGAAUGACCCAUAUUA

1

0 ncRNA

8189 CUGGGGUUGCCACUUAGGACGAGGC

10 transposon

LTR

ninja-Dsim-like

8190 CGAAAAUGCAGACCUAUUGUCAUCCGU

1

1 transposon

LTR

flea

8191 AAGGAUCUAACACGUGCGCGAG

1 no match

8192 GCGAAGGUGGCGGAAUUGGGAUUCG

1 no match

8193 CCCGUUAUAUCUGGCUCGUCAAAU

1

1 transposon

LTR

Quasimodo

8194 UCCUCAAACUGUGAGGGGAUCCUCAA

1 no match

8195 UCUCAUCGUCUUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)8196 AUCAGCGAUGUGUGGGGCAAGACA

1

2 Su(Ste)

Su(Ste)8197 UCCCAGCUCGGGGAGGUGGUGACGUAAAA

1

2 ncRNA

8198 GGAGCCUGACGACCACGACCUCUUAG

1

1 transposon

8199 AGUAUUACGACGCGAGAGGUGA

10 ncRNA

8200 UUCCGAGAAAGCCCGCAGAAUUUGCAUC

1

0 transposon

LTR

flea

8201 ACCAAGAUCAUCAACCCGUGUUAUUCU

1

0 transposon

LINE

Cr1a

8202 AAGAACUGGCGCUGCGGGAUGAAC

1

2 ncRNA

8203 AAGACAGACAUGCCUCGCUCCCGAA

1

0 transposon

LTR

invader1

8204 CGAGCGCACGUGUUAGGACCCGAAA

1 no match

8205 UGGCCGUGAGGGGGAUGCCCGG

1 no match

8206 AAAACAACGACCCGCUACCGGAG

1

0 transposon

LTR

opus

8207 CACCAAGCGUUGGAUUGUUCACCCA

10 ncRNArRNA

8208 UACUCGAAUGAGUGCUUGAUAUGACCA

1

0 Su(Ste)

Su(Ste)8209 CCACCCUGAACUCGCCCGAUCUCGUC

1 no match

8210 UUGUAACAACUCACCUGCCGAAGCA

1

1 ncRNArRNA

8211 CAGAUCCGAAAUCGCACGAGCUGCGUU

10 coding gene

8212 GCAUUCGCGUCGAGGCCCAGGAUUU

1

1 transposon

LINER1-element8213 GCAUUCAAUACAGCGAGAUGGCCCC

1

1 transposon

LTR

Quasimodo

8214 GCCUGGGCGACGGGCGGUCCCUCGACCAC

10 coding gene

LINE

Cr1a

0 transposon

LINE

G2

1 transposon

LTR

mdg3
CG31359-RA¦Hsp70Bb

LTR

G4
SAR̲DM

pseudogene
LTR

opus
pseudogene

AT-chX-B

LINE

G
CG32445-RA¦CG32445

0 no annotation

CG17377-RA¦CG17377

CG40635-RA¦CG40635

CG5265-RA¦CG5265
tRNA

rRNA
LTR

diver2rRNA

rRNA

CG7578-RA¦sec71

CG10377-RA¦Hrb27C

8215 ACAAGAUGCAUGCCCGCGCCCGA

1 no match

8216 CUGCACCCGCUCACGCUCUGACUGA

18217 AACACUGAGAGAUGAUGACGAGGCUCU

1 no match

8218 UGCCUUGACAUCGAAUGGAGUGCCAGA
8219 ACUGAAUAAACGAAAUGGAUGACUA
8220 CCCUGGGUUCAUUUCCCAGCUCGCCCC

1 no match

8221 UCGAACGAUAAACGGUGCUAACCAGCC
8222 AGAGGAGGCGAGAAUUUUACAUUCA

0 transposon

LINE

F

1

0 transposon

LINER1-element

1

2 transposon

LTR

invader4

1

0 transposon

LTR

GATE

1

1 AT-chX

AT-chX-B

8223 AUUGCUAACAUCGUCCCGGAUAAC

1

0 coding gene

CG31988-RA¦CG31988

8224 UGCUCCCGCAAUCUCCCUGUGGAUCCG

1

0 coding gene

CG41423-RA¦CG41423

8225 CUGUAACUCGGGUCAUAAAAAAAAA

1 no match

8226 ACUUCAUAACCGAGCGACUGUUCAUA

1 no match

8227 GUGGAAAGAGAGCAAUUUUGGCCGU

10 transposon

DNA8228 AGAUCAAGAAUUCCGUGCCAAGA

1

0 transposon

LINE

Circe

8229 AAGAGCAUAAAGACGACGAAAGUGAC

1

1 transposon

LINE

Doc3

8230 UUAAGUCCCGUUACUUGUGCCCAG

1

0 transposon

LINE

G6

8231 CGUUUCAUGAGGAAUCGGCCCAGUG

1

1 transposon

LINE

G2

8232 GUAAGUGGAGCCGUACCUGUUGGUUU

10 ncRNA

8233 GGCUCGAGAUCGAAGAGUAUGAGU

10 transposon8234 ACCCCGUGCACCUUUA

1

1 no annotation

8235 AAUUGACAAGGGCAUGAGCGACAC

1

0 transposon8236 AACCUGAGAGUUUGAUCCUGGCU

1 no match

8237 AACUGAACAUGGUCAUCCGUAAGCU

1 no match

8238 CCAGAUGAUAUUCCCGAAAACAGCCGU

1 no match

8239 CGCCGUAUACGCCCUGGACUGCGA

18240 CACCCUGAACGCUCCCGAUCUCGU

1 no match

8241 UGAACCACUUUCAUGCUUGGGGU

11 ncRNA

8242 UUCUACCACAACACGCACACAUACAC

1

0 transposon

DNA8243 GCGGGCGGCCCCGGGGUUCGUUUCCCC

1 no match

8244 UGCUCUCGAACGUACGCCCGAUAU

1

1 transposon

LINE8245 UUCCGAGGAACCAAUAGAUCCAGCUG

1

1 Su(Ste)

8246 CCGGCAUUAAUUUCUUUAAUUAUGACA

1

0 no annotation

8247 UGGAGUUCGAGGAGUGGCCCGUUA

1 no match

8248 AUACCACCUGAACGCGCCGAUCUCG

1 no match

8249 GAAGAGAGAAGAGAGAAGAGAGA

18250 CCCUGAACGCGCCCGAUCCCGU

1 no match

8251 AAAUUAUGCACCGAAUAUAGCGAUA

18252 CGAAUCCCGGGGCCGAGGGAGCGAGAC

1 no match

8253 UUCGAGAGAGCCUGGAGCCACC
8254 UGCUUUCGAAUGUAUGCCCGAUAU

1360

rRNA
Simple̲repeat

I

LTR

springer

0 coding gene

CG14801-RA¦CG14801
rRNA
1360
R1-element
Su(Ste)0 repeat(GA)n0 transposon

LINE

RR497831

0 transposon

LINE

Cr1a

1

1 transposon

LINER1-element8255 UGUCAUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)8256 GUAGUACGAGAGGAACCGCAGGUACGGA

10 ncRNA

8257 CUGACGAUAUUGCCCUGUUGUACAGC

1

0 transposon

LINE

BS

8258 UCAGUCUUGAAAAUGUUAAUACCGAAU

1

1 transposon

LTR

invader68259 CUCGGGAUCAAGGGCAACGAGUCC

1

1 coding gene8260 CAGACAGAGACGGAGCUUUCUCCAGU

1

0 transposon8261 CACCGACCGAUCUUAUUGGCGCACCCGC

1

1 no annotation

8262 ACAACGACUCCUGGAAUCUCUGAA

1

1 coding gene

CG4230-RA¦CG4230

8263 CAACUGUGAGGUGUAUCCCUCC

1 no match

8264 CACGACCCCCAGCUACGUGGCCUUCACC

1 no match

8265 UCGAGUAAUAAAAUGCCAUUUCAUG

1 no match

8266 GUCCCGCCGGUUGGUACCUACAGUGAAU

1 no match

8267 AUCCUCAACUGUGAGGAA

1

2 coding gene

CG13004-RB¦CG13004

8268 AACCUGAACGCGCCCGAUCUCGUC

1 no match

8269 AGCAGAACUCCGAUGGCGAUAGCAA

1

0 no annotation

8270 UACCCAGAAACAAUGCUGAAACACUA

1

0 no annotation

8271 ACGUUGUGGCCGAUGAAACCCUGGUUC

1 no match

8272 UUGGUCAACGAAAUGGGUUUUGGUGAU

1

1 transposon

LTR

DM88

8273 UCAAAUAGAAAUGGACUCAGAGUCU

1

1 transposon

LTR

rover

8274 CAGAACGUCAUCGAACCCUAGAGG

1

0 transposon

LTR

GATE

8275 CACGAUGAUCGAUGACGAACUACGA

1

0 transposon

LTR

ninja-Dsim-like8276 AACACAUCGAGCGACCGCGUAGUC

1

0 transposon

LINE

Doc3

8277 ACGAGUAAUCGAUCGUUCAAGUAUUGC

1

1 transposon

LTR

micropia8278 CGAGAACAAACGAUACUGUUCGGC

1

0 transposon

LINE

G2

8279 UGCCGUUCGUCCUGGAGUCCCGA

1

0 coding gene8280 AGACUUCAAAGUCUACGUGCUAAAAG

1 no match

8281 AAUACAUGCCGACAGGCGCUGACCCC

1 no match

8282 GAGUUCGAAUCUCUUAGCAACCACCA

1 no match

8283 UCAAGAGUUAUUUAAUGCAAUACAAG

1

0 transposon

DNA

HB

8284 GCAACUGAACCCAAGAAAAUCGCCU

1

0 transposon

LINE

Doc

8285 GGAUCCUCAACUGUGAGGGGUAUCCUCAA

1 no match

8286 GCGAGGACGAGGGACGCGGACGCA

10 coding gene

CG7564-RA¦CG7564

8287 AGGGCAAAUGCUGACUUGAUCUCG

1

0 repeat

LSU-rRNA̲Dme

8288 CUGGAUCGAUUGGUUCCUCGGGAUCAA

1

0 repeat8289 CAGACAUUAAAGUUACGAUAUUU

1

2 transposon

LTR

McClintock

8290 AUGGCUCUCAGUCGCUUCCCGGGUA

1 no match

8291 CUGAACCCGCAGAACACCGUGUUCGACG

1 no match

8292 CUCAAUAAGCUGCCAGACCUGAUCGAC

1

0 transposonLow̲complexity

F-element

8293 CACGGGAAAACUUACAAGGUCCGAAC

1

1 ncRNA

8294 AGGGUGCGAGCGUUGUCCGGAAUU

1 no match

8295 ACCACAGAGUACGGGGCUUACUAAAGU

1

0 transposon

LINEbaggins8296 AAACGCUUUCAACACCGCCAGAUGGCCCA

1

2 transposon

LINE

F

8297 CGGUCCGACACCAUGUCCCGUUGC

1

0 transposon

Simple̲repeat

I

Su(Ste)rRNA

CG40635-RA¦CG40635
LTR

297

CG10252-RA¦CG10252

trf

rRNA

8298 GUGGCUUGAGAUGUGCCGUAGUUA

1 no match

8299 AAGGCCGGCGAGUUGAUCGAAA

1 no match

8300 GAAACAGAGAUCUUCAGCAGUGGGA

1

0 AT-chX

8301 GUGGAAUUGGUCUUGCUGGCCACAG

1

0 transposon

8302 ACCUACGAAAUAAGCUGUCUGAGUU

10 coding gene

8303 AAAAAGUCCAAGCUGCGAGAGAAAC

1

0 transposon

LINE

G2

8304 CAGAAAAUGACGACCCAGAUGAGAA

1

0 transposon

LTR

roo

8305 CCAGAUGAUAUUCCGAAAACAGCCGUCAC

1

0 transposon

LINE

Doc4

8306 UAGAUCUUCACCGUUGACUUGCCCCG

1

0 Su(Ste)

Su(Ste)8307 UAAACGAGUGUUAUUGUGGGCCGGU

10 ncRNArRNA

8308 UCGAGGUGGGCCUUCUGACGAGAA

1

1 no annotation

8309 UUGAUACGAAUGAGACCCGCAGUAAAG

1

0 repeat8310 UGGGCUCCGGGGAAGUAUGGUCGCA

1 no match

8311 CAGCCUAGGAGACGUGGACACGGA

1

1 transposon

8312 UCUCAUCGUCGUAGAACAAGCCCCG

1

2 Su(Ste)

Su(Ste)8313 AUACCACCCUGAACGCGCCCGAUC

1 no match

8314 AACCGAUAACGACCUUACCACCGCUCC

1

0 coding gene

CG3051-RB¦SNF1A

8315 AGUGGAGCCGGGCGUGGAAUGCGAGUG

1 no match

8316 GCCACCGAGAUAUGAGGACGAAGUG

18317 AAGGGGGACCUGAGCUGUCGUGCACCCG

1 no match

8318 ACCGGACGGGCCUAGAGUUAUUCCCC

1

0 coding gene

CG40635-RA¦CG40635

8319 CGGCAAGACCAGUUCCACUCAGUUG

1

0 coding gene

CG8838-RA¦CG8838

8320 CACGCAAUAAAAACUUUACGAGUGC

1 no match

8321 CACCAGAGAUCUAGAGGGCCCAAGG

1

2 no annotation

8322 CAAGAUAUGACCAAAGCAAAGACUAG

1

1 transposon

8323 UGUUUCAUCGUUAGCCGGCUCGGGCG

1

1 AT-chX

8324 CAACACAUGAACAGAGUCAUUUUCAA

1

0 transposon

LTR

McClintock

8325 AGCGGAUGAGCUGUGGAUAGGGGU

1 no match

8326 UACUAUCUCGGGGAGCUUAUGCGAU

1

0 transposon

LINE

I

8327 GUGUCAAGUUCUUUAGCCACCAGUACA

1

0 transposon

LINE

Doc3

8328 GGGGAGUUUGACUGGGGCGGUAC

1

1 ncRNA

8329 UGUUUCAUCGUAGACGGCUCGGGCG

1 no match

8330 AACUGACGGCGCCACUGUAAAUGUGA

18331 UUAGACCUCGGAGAAUUUGGUAG

1 no match

8332 ACUCGCCGAAUCCCGGGGCCGAGGGGAGC

1 no match

8333 GGACGAGGCGUUCCGAGCUGCCCAG

18334 AGCUUGAUCUAGGAACAGUCAGCUC

1 no match

8335 AUUGGCGAGAGACCGAUAGCGAACAAGU

1 no match

8336 GAUCCUCAACUGUGAGGGGAUCCUAA

1 no match

8337 AAUAGGGACGGUCGGGGGCAUCAGUA

1 no match

8338 GCGAGAGACCGAUAGCGAACAAGUACA

1 no match

8339 GAAAACCGACGACACUAUAGCCCAUU

18340 UUGACAUAUCAAGAUAUUCCGAGCUC

1 no match

8341 CCCCUGAUGAAGAAGAGAUGCCCAG
8342 UAGUGUUCAAUGCCUCCAGCCCU

0 transposon

0 transposon

AT-chX-A
LTR

blood
CG40084-RA¦CG40084

trf
LINE

LTR

R1-elementninja-Dsim-like

DNA

1360
AT-chX-B

rRNA
LINE

0 coding geneR1-element

CG4836-RA¦CG4836

0 transposon

LTR

INE-1

1

0 transposon

LTR

ninja-Dsim-like

1

0 transposon

LTR

GATE

8343 CACGUCCAGUGCUGGCUGAAGUACU

1

0 Su(Ste)

Su(Ste)8344 GUCCCUGCCCUUUGUACACACCGCC

10 ncRNArRNA

8345 GCAUCGGUGGUUCAGUGGUAGAAUGCUU

1

1 ncRNAtRNA

8346 CGCACAAGCGGUGGAUGAUGUGGUU

1 no match

8347 CCGGAGCGAGGAGGAGGACUAGCUGGC

10 Su(Ste)

8348 CAGACCUAUACAGAUUGGAACAUUU

1

0 transposon

LTR

McClintock

8349 UGCUGACUAAGAGGGCUGCACAG

1

0 transposon

LTR

HMS-Beagle

8350 AAGUGAAAUAACCCAAUACGUAGGC

1

0 no annotation

8351 GUCCCUACCUACUAUCCAGCGAAACC

1

2 ncRNA

8352 AAACCCGAAGAAGACUCUACUCGAG

1

1 transposon

8353 AAUUUUGAACGAAAGGGAAUACGGUUC

10 ncRNA

8354 GAGGAACUAGCAGGAUUCUUUGCC

10 transposon

8355 AAGGAGUGUGUAACAACUCACCUGC

10 ncRNA

8356 GACGAGAUAAACCAGCACUCGAGUA

1

0 transposon

8357 CGGCUCCGAAAUCGAAAACACAACACA

1

0 coding gene

8358 GACAAAACAACAUCCCGGGAAAUGAG

1

0 transposon

LINEbaggins

8359 ACCAUCUGUGGGAUUAUGACUGAA

1 no match

8360 AAUGUGAGGGGAUCCUCAA

1 no match

8361 CCGCAAGGCGUAGGCGAUGGAUA

1 no match

8362 CGGUCCUGAGAGAUGGGCGAGCGCCGUU

1 no match

8363 UCCUGGGAAACGGGGCGCGGCCGGAAA

1 no match

8364 GGGGAACUGAGGAACGCAUUUCAA

1

0 transposon

LTR

invader38365 UGCCCCACAUCUAGUGUUUCAGCAUUG

1

0 no annotation

8366 AUUGAGAGGCGCCGUAGUUACCAC

1

1 no annotation

8367 GAGCGCACGUGUUAGGACCCGAUAU

1 no match

8368 AAAACCUGAAGAUGAUCCUGAGUUCGC

1 no match

8369 AUGAGGCCAUUUACCCAUAGAGGG

10 ncRNA

8370 CCCUGAUGACACGCAGUACCAGAGG

1

0 transposon

LINE

INE-1

8371 GUGCUACUCGAACUGUAUGCCCGAUAU

1 no match

8372 GGAUCCUAAACUGUGAGGGGAUCCUCAA

1 no match

8373 ACAACAAUUACAACCGAGGCAGCAU

1

1 transposon

LTR

gypsy88374 CUCAGCGAUGUGUGGGGCAAGACAA

1

1 Su(Ste)

8375 UUACAUAAGAUAUGAACGGAGCCC

1

0 transposon

8376 UGUCGCUGAGCGAGGGAAUCCGGG

1

0 coding gene

CG3704-RA¦CG3704

8377 GCUAAACCAUUCGUAGACGACCUUCU

1 no match

8378 UGCCCCCACUGGACGACGUUUGCACCUU

1

0 coding gene

CG3722-RA¦shg

8379 ACGAACGAGACUCUGGCAUGU

1 no match

8380 UUCUGACGAGAACUCGAGCCGCGUA

1

0 no annotation

Su(Ste)

rRNA
LINE

Circe
rRNA

LTR

3S18
rRNA

LINE

X
CG8287-RA¦Rab8

rRNA

Su(Ste)LINE

Cr1a

8381 UGUUUCAUCGUUAUACGGCUCGGGC

1

1 AT-chX

8382 AGCGACCCACUCUUAUGCUCGGCAA

1

1 coding gene

AT-chX-B

8383 GCAAAACUUAGGCUGGGACGAUAA

1

0 transposon

8384 CCGGCAUUAAUUUCUUUAAAUAUGA

1

0 AT-chX

8385 CCCUACUGAUGAUGUGUUGUUGCCA

1 no match

8386 CGGGCCGAAAUCAAUGUUGAUCGAAU

1

1 transposon

8387 GCCCAAGCGAUCGAUGCGAUAUUAUC

1

1 coding gene

8388 AUAUAGCAGACAUCCUGAAACGUU

1

0 no annotation

8389 AACCAUAUCGGACGACGCAGCGC

1

0 transposon

8390 UGCACCGAAAAUAUAUGCGAGGAGAUA

1

1 repeat8391 GAGGCAAAAAGGACAUUCACCCAGG

1

0 transposon

LTR

HMS-Beagle

8392 ACCUUAACGAAACCAGAGACAUAAUCC

1

1 transposon

LTR

gypsy48393 CCUGACCAGAAGAACCGUAAGGCAU

1

0 transposon

LTR

micropia8394 CAAGAUAUGACCAAAGCAAAGACUUUU

12 transposon

DNA8395 UGAUCUCGGAAGCUAAGCAGGGU

1 no match

8396 ACGUCCGCACUAAGCUUGCCAUCA

1

0 ncRNA

8397 GGCAUUGAGAGGCGCCGUAGUUACCAC

1

1 no annotation

8398 UUCCCAACAAGACAUCCGAUUAGUUC

1

0 transposon

8399 AGCCGGUGAUCGAUAGUUCCUCU

10 repeat

8400 AUGCGAGUGCGAUCUCACCGAUGUC

1

0 coding gene

8401 CCUACAUGGAGACAUCACCGUUGGU

11 transposon

8402 AGGAGAUAUACUUUCAGCCGCGUA

1

1 coding gene

8403 UCCGAUUUCAAGUACCAGGCGAACA

1

0 repeat8404 UAGGAAACUGGAUGAAGACAUGCUA

10 transposon

LINE

Rt1a

8405 UGCAAGAUAAAGACCCUUCUACCUGCGUC

1

1 transposon

LINE

Helena8406 CUGGUUGAUCCUGCCAGUAGUUAUAUGC

10 ncRNA

8407 AUGGAGCGCAUGUUCACCCAGAUGACAC

1

0 transposon

8408 AGGUGAACCGUGAGAUUAUCGAG

1

0 coding gene

CG6671-RA¦AGO1

8409 UUGCAACGGGUAACGGGGAAUCAGG

1

0 ncRNArRNA

8410 CAGGCAAGGUGUUGUAAGUGGUUGAG

10 ncRNArRNA

8411 GCCAGCAUGACGUUCUUCUAUCUGAUU

1

0 coding gene

8412 UAGUACAAUAGAUCCGACUGGGUGA

1

1 transposon

8413 AAAUACAUGCCGACGGGCGCUGACCCCCC

1 no match

8414 UAACGAUGACAGUGCCUGGGACAA

1

0 coding gene8415 UCCUGACGAAGAGCGCAAGAAGA

1

0 transposon

8416 UGUUUCAUCGUUAGACGGCUCAG

1

1 AT-chX

8417 UCCAGAGUUAUGUUAUUUCCAGUAGGUC

10 transposon

8418 AAGACAUUAAAGAAAUAGUAGAUCACGA

1

1 no annotation

8419 UGCAACUCGAGCGACGCCGUCUCUGCCUA

18420 GCAUUCAAUACAGCGAGAUUGCC

18421 CAGUCUAUGAAAGGUGUGUUGCCC

CG4439-RA¦CG4439
LTR

Rt1c
AT-chX-B

LINE

G
CG33933-RA¦Indy-2

LINE

Rt1a
trf

1360
7SLRNA-RA

LINE

Circe
trf
CG5458-RA¦CG5458

LINE

G2
CG16781-RA¦CG16781
RSP

rRNA
LINE

G6

CG4692-RA¦CG4692
LINE

baggins
CG5621-RA¦CG5621

LTR

opus
AT-chX-B

LINE

accord2

2 transposon

LTR

Quasimodo

1 transposon

LTR

Quasimodo

1

0 transposon

LTR

GATE

8422 GGCAAUACCAUCACCGUGGGCGUGAAGA

1

0 coding gene

CG4362-RA¦CG4362

8423 UGCUUGGACUACAUAUGGUUGAGG

10 ncRNArRNA

8424 ACAACGAGAAGACAGUAAUCGACAGCAC

1

0 no annotation

8425 AGUAUCUAGGACUACCAUGGUCGCA

1

1 ncRNArRNA

8426 UGACGUGACCCCAGUGUUGAAUAGC

1

1 coding gene

CG32026-RA¦CG32026

8427 CGGUACUAUUACUUUGAACAAAUUAGA

10 ncRNA

8428 AUCGAAGGAACGAUCGCAAGGCAGC

1

0 transposon

8429 AAACCUGAGGGGAUCCUCAA

1 no match

8430 ACCAGACGGAGGUCUGCCUUUCGCAGUC

1 no match

8431 GUUGCUUUGAGAGGCGCCGUAGUUA

18432 GCAACUGUGAGGGGAUCCUCAA

1 no match

8433 UCCAAGUCCAUCUAGGUCCCGCAGA

1

0 transposon

8434 GGGACGUUAAUGAAGAUGCCGUGG

1

0 coding gene8435 AUGGAUUGAAACGUUUCAGUCAGA

1

0 no annotation

8436 GUGGGCCGGUACUAUUACUUUGAA

1

0 ncRNA

8437 CACCCACUGGAGGUCCGAACCGAUUAA

1 no match

8438 GCCCAAGACCCCCGAGAAACCAAAGCC

1

0 transposon

8439 AACGAAAGUUAGAGGUUCGAAGG

1

0 ncRNArRNA

8440 CACCUCCGCCCAGUUGGAAUAUCCAAA

1

2 coding gene

CG3748-RA¦CG3748

8441 UUCAAGGUUACCCCAGGAUGCUGUGA

1

1 repeattrf

8442 AUAAACGCGAACGACUUGAAAAA

1 no match

8443 AGUACCUCGACCAGACGGUGGCCCCCC

1

1 coding gene

CG11591-RA¦CG11591

8444 AACGAGUUCCUCUGCCACAUGCCCAU

1

2 Su(Ste)

Su(Ste)8445 CCGGGAAGACGUUGAAUUGAUCGG

1 no match

8446 UUCAGAGAAAACCAAGGAGAAGU

1

0 no annotation

8447 GCAUUCGAGACCCAACGGCACGUGU

1

1 transposon

LINE

INE-1

8448 AGGAUCAAUAGCCGAGUCGCUCUAGC

1

0 transposon

LINE

INE-1

8449 CGGUUCAUUCCCGGGUUUCGGCACCA

1 no match

8450 AAAACCUGAAGAUGAUCCUGAUUC

1

1 transposon

LINE

Helena8451 CGCAUGUGAAUGUUGGCCCCAGAA

1

0 no annotation

8452 UCCUGGGAAACGGGGCGCGGCCGGAA

1 no match

8453 GCCUCGGGACUUCCUAUAUAAGCGGAA

1

0 ncRNA

8454 UACUCAUAGACACCCUAGGCUGAGACC

1

0 transposon

8455 ACUGCAGAUCGUAUGGUCUUGUACC

1

2 ncRNArRNA

8456 UACUCAUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)8457 UGCCGAGAGCUGAUGACGAGCUU

1 no match

8458 ACAUAAGAAAGCCGACAUCCCGACA

1

0 transposon

8459 UUGGGAACACCGCGUGUUGUUGGCU

11 ncRNA

8460 AAGAGGGCGUGAAACCGUCAAGAGGU

1 no match

8461 AAACACUCAGAACGUCUUGAUUCG

1

0 transposon

LINE

RR497838462 CAAACCAAUCCCAGCCAAACCCGUCAA

1

0 transposon

LINE

G2

8463 ACUUCCAUCCUAAAACUGAUAGACAGC

1

1 Su(Ste)

rRNA
LTR

flea

LINE

R1-element

1 no annotation

pseudogene
rRNA
LINE

G6

snoRNA
LTR

LTR

G4

GATE
5SrRNA

Su(Ste)8464 UAGAGAGCGAGAGAGCGGGGAGC

1

0 transposon

8465 GAUCUCCCGUGUGUGUUGUUCGC

1

0 coding gene

8466 GAAGAAGAGGUGCCCAGUGAGUU

1

0 transposon

8467 AAGUAAAAGACCAAGCCAAGAGAC

1 no match

8468 GCGGAGGUUGCGGUGCUGUACACUG

10 ncRNA

8469 UCUCAUCAUCGUAGAACAAGCCCGUA

1

2 Su(Ste)

8470 ACAUUCAUAACCGAGCGACUGUUCACAC

1

2 transposon

LTR

GATE

8471 UCCGAGCUAAUCCGAGCACCAAGCUGA

1 no match

8472 UGAUUUGAUAUCCGUGGACCAGUACA

1

1 transposonDNAtransib2

8473 AGCUUCAUCCAAGAGAACUGUGGCCG

1

1 transposon

LINE

R1

8474 UUGAAUGAAAACCCGGCCUCUGUCAU

1

1 transposon

LTR

micropia8475 CCCCAGUGGCCUAAUGGAUAAGGCAUC

10 ncRNAtRNA

8476 UUCACCAAGCGUUGGAUUGUUCACCCA

10 ncRNArRNA

8477 GGCUCUGAAGAUUGAGAUAGUCGG

10 ncRNArRNA

8478 UCGGCUCAUCUCAUCCUGGGGCUG

1 no match

8479 UACAAUAUCAGAAGUGGGCCGAUCA

18480 GGCUCGUCGCAUCCUGGGGCUGG

1 no match

8481 ACUUUGAGGGGAUCCUCAA

1

2 coding gene

8482 CCCGAAUUGAACUCAUUAAGUGUAC

1

0 transposon

8483 UGCUAGAGGAGAGUGUGCGCUUGGC

1

0 no annotation

8484 UCAGCAGCGGGAUGAUCAGUAGCACC

1

0 transposon

8485 ACACAAGUUAAGGAUGGAGGAUCUCG

1

0 no annotation

8486 GCGGUGAAUACGUUCCCGGGCCUUGU

1 no match

8487 AGUACGAUCCGUCUGCAAACUUCCUC

18488 GCCUUACGAAACGAAACCCGAUCAGA

18489 UAACUACAUGACGCGACAAGUUCUGG

1 no match

8490 CCGUACUUUACUUUUGCACAAAAC

1

2 no annotation

8491 CACCAUGAUAUCGCGUACCCUUAAA

18492 GGUCCUGAGAGAUGGGCGAGCGCUGUU

1 no match

8493 CGGUCUAUUCGCCAGGUCCCGAUG
8494 CCAUCAUUCAAAGCCAGCUGGAUGUCC

0 transposon

DNA

1360
CG6963-RB¦gish

LTR

ninja-Dsim-like
snoRNA
Su(Ste)LTR

rooA
CG2675-RA¦Csat

LTR

rooA

LINE

R1-element

0 transposon

LTR

opus

0 transposon

LTR

gypsy

0 transposonLINEaccord2

1

0 transposon

LINE

Cr1a

1

1 transposon

LINE

G

8495 AAACUACCAUAGCAAUCUUCACACGC

1

2 transposonLow̲complexity

F-element

8496 GUGUUCAAGUCCCGUCCUCGUUACCA

1 no match

8497 GCGUACCGGAGUGGACUGCCGUU

10 ncRNA

8498 CCAACUCCGAUUGCAGCAACAUGC

1

0 transposon

8499 UGUUUCAUCGUUAGACGGCUCGCGC

1

1 AT-chX

8500 ACCCCUCCCACGGCGCGACCGCUCUC

1 no match

8501 GCGGGUGUUGACGCGAUGUGAUU

12 ncRNA

8502 CAACAAAGCACCUGGACAUGACGUCA

1

0 transposon

Simple̲repeat

I

8503 UGGGUCGGGGUUUCGUACGUAG

1 no match

8504 GGUUCGAGCCCCAUCAGCCACCCCA

1 no match

8505 AGAACCAUCACUGGGGCACCGUGGUA

10 transposonLow̲complexity

F-element

8506 GACGGGCCUGAUGUUCGUUGAUCGCCA

1 no match

8507 CUGUAGCCUUCAUUCAUGUUGGC

18508 GGUGCGCUUGUGACGGCCCGUGUA

1 no match

8509 GGGAAACCCUGAUGGAAGACCGAAA
8510 AAGUUAACUAUCCCAAAGGCAUCACGC

7SLRNA-RA
LTR

297
AT-chX-B
rRNA

1 ncRNArRNA

1

0 ncRNArRNA

1

0 no annotation

8511 UGAAAACACAUCAGAACCCAUGGAG

1

0 transposon

LTR

springer

8512 UGCUCUCGAAUGUAUUCCCGAUAUACG

1

1 transposon

LINER1-element

8513 GCUGGGUCGGUCGGGCUGGGGCGA

1 no match

8514 AUAGUAAUGAUUCCCAAGCCAGGCAAU

1

1 transposon

LINE

Doc2

8515 AUCGCCAAUUCGAGGACCCCAUGGAAC

1

0 coding gene8516 AAGACAAGAACAGCUCGAUACGAA

1

0 transposon

LTR

invader6

8517 CAAACCAAUCCCAACCGAACCCGUC

1

1 transposon

LINE

G2

8518 GGCUUUGAGAGGCGCCGUAGUUACCACCCC

1

0 no annotation

8519 AAUAGAAGCAGUUUGGGGGCAUUAG

1

0 ncRNA

8520 CACAUCAACAAUAAGCGUAUCCAGU

1

1 transposon

LINE8521 GCGCUCUCCGCUCUCUCGCUCCCUAA

1

0 transposon

DNA8522 GGUCCGAGGAUCGCUGUAACUCGAU

1 no match

8523 UACAAGCAAGACCACCACACCCGAC

1

0 transposon

LTR

8524 UGUGGGCCGGUACUAUUACUUUG

10 ncRNA

8525 UCCGGGAGGGUGUGAUUGGAAGGUC

10 transposon

LINE

G

8526 GCAUUCAAUACAGCGAGAUGGCCCAAU

1

0 transposon

LTR

Quasimodo

8527 GAUAACGAACGAGACUCAAAUAUAUUAA

1

0 ncRNA

8528 ACGAUCAAUAAAACAUACGCCCGGUUU

12 transposon

LTR

GATE

8529 UACCCCAUCCCAGAUAUAAACGCUACGC

1

0 transposon

LTR

opus

8530 UGUUUCGCAAAAGUUGACCGAACUUG

10 ncRNA

8531 GACAACAACAACUGGAUGGUCCAUG

1

0 transposon

LINE

F

8532 AAACUGAAUAAACGAAAUGGAUGACAC

1

0 transposon

LTR

invader48533 ACGUCUAUAAUUGAUACCUACGGCAC

1

0 transposon

DNA8534 GUUGCAAUUAAACAGAGUUCCGCAGUGC

1 no match

8535 CAAGCCAAUCUAGACGUACGGAAUAC

1

0 transposon

LINE8536 UGGCUCUCUCAGUCGCUUCCCGGUA

1

1 ncRNA

8537 GAACCCUGACCUACGAGUCCGUCCAUCA

1

0 coding gene8538 UCAACGAGCAUCAGCCAUCAUCCA

1

0 transposon8539 AGAGCUGAGAGCCCGCAGACUGAUUUU

10 ncRNA

alphagamma-element

8540 GGCUACCCACCCGACCCGUCUUGUAAC

1 no match

8541 AGACGCAGGACGGUGGCCAUGGAAGU

1 no match

8542 CCACCAGGUGAUCCUGAGCAAGGG

1 no match

8543 CCAUGGUUGCAACGGGUAACGGGG

10 ncRNArRNA

8544 CCACAUCUAAGGAAGGCAGCAGGCGCGU

10 ncRNArRNA

8545 CCGAGGCCCUGUAACUUGGAAUGAGUA

1 no match

8546 AACUGAAUAACGAAAUGGAUGAC

1 no match

CG6691-RA¦ttm3

rRNA
G2
1360
gypsy12
rRNA

rRNA

rRNA

1360
G2
rRNA
CG6255-RA¦CG6255

LINE

G2

8547 CGUAACUUCGGGAUAACGGAUUGGCUCU

1 no match

8548 AUGGCUCUCCCAGUCGCUUCCCGGGA

1

1 ncRNArRNA

8549 CCGAUACAUCAGGUCAGAGCGUG

10 repeattrf

8550 GCCUGAUGACCAUAGCGAGUUGGUACCAC

1 no match

8551 CUACGUCCGUUGGAUUAUGCCUGAAC

1

0 ncRNArRNA

8552 UAGUUUCAUCGUUAGACGGCCUCGGGCGU

1 no match

8553 GCAGAAGUUCGAAGGCAGUUUUCA

1

0 transposon

LTR

flea

8554 UUCGAGAAAAAUUGACGAAUUGCUGA

1

0 transposon

LTR

invader28555 GGCGGUAAUCCCAAGCCGGAGCUUUCU

1

0 coding gene8556 CCAGAGAAUAUGAGCAGCUAGAGA

1

0 transposon

LTR

3S18

8557 AUUGAGCGAACCCGGGGAACUGAAA

1 no match

8558 UCCAUCUCGAAUACGUCACCAAAGC

1

0 transposon

LTR

ninja-Dsim-like8559 AGGUACGGACCAAUGGCACAAUA

1

0 repeat8560 CAACACCCAAAAUAACAAAUAAUAAA

1

1 transposon

8561 UCAAGAAUAACAGAACCAUCCAAGA

1

1 no annotation

8562 AAAGAGAGCAAUUUUGGCCGUCA

1

0 transposon8563 GGGUCGAAACGAUCUUAACCUAUUCUCAA

1

0 ncRNA

8564 CGGAUGUGACCAAUAUCAAGGCUC

1

0 transposon

LINE

G6

8565 ACCUGAAGAUGAUCCUGAGUC

1

0 transposon

LINE

Helena8566 CAGUCGCGAUAUUGGAAUCCCCG

1

0 transposon

LTR

diver28567 GUCUGGUUAAUUCCGAUAACGAACGU

1

1 ncRNArRNA

8568 UGGGAACACCGCGUGUCGUUGGCCU

1

1 ncRNA

5SrRNA

8569 UGAAACUGCUUAGAGGUUAAGCCCGA

1

0 ncRNArRNA

8570 GGGUGAAUCCUUUGUAGACGACUU

1 no match

8571 AUUGAAUUAUUUAGUGAGGUCUCCGGA

1

0 ncRNArRNA

8572 UAGAGGUGAACCCGAUUGAAGUAUCA

1 no match

8573 AAAAAAACCUGAAGAUGAUCCUGAGUCGC

1 no match

8574 UCCAGACGUAAUACUCCACUACCCGU

18575 AUCCUCAACUGUGAGGGGAUCCUAA

1 no match

8576 CAGAUCAACAAAGUCCGAUGGGG

18577 GGGGGAAUGUCCCGAGCGGCAAAGGGGG

1 no match

8578 GCACACAGAGGAGAGCAGAUGAGAG

1 no match

8579 UAGUACAUUAAUUACUCGAUGACGC

18580 ACCGAGAGACGCCGGCCGCUAC

1 no match

8581 CUCAUCGUCGUAGAACAAGCCCGA

18582 UGCUCCUGAUGGCGAGUGGCGAACGGG

1 no match

8583 GUCCUGAAGAUCUAUCCCAGCCUAAG

1

1 transposon

8584 GCGUCAUCGUGUGAACUGCAAGACACA

1

1 ncRNA

8585 GCCGGGGAUUGUGGGUUCGGGUCCCAUCU

1

1 ncRNA

8586 ACAGAGGGCAACCUACGGGGCAUUA

1

0 transposon

8587 AACGCAUGGACGACUCAUUGGCUGUAA

10 coding gene

8588 AACGCAUAAUGUGGGUUGGGCCA

1 no match

8589 CAGAUAUGACCAAAGCAAAGACA

1

1 transposon

LINE

Cr1a

8590 CUUGAUUGCGACGGACUUAGGGAA

1

0 transposon

LTR

HMS-Beagle

8591 AUCGCAAAGAAGCUGUUUUUGAAGGAC

1 no match

8592 AAUAGUGAAAUCCUGGUACAGAACCGAC

1

0 transposon

LINE

Circe

8593 ACGGAAGCGAUCCCACUGCUGAAGA

1

1 AT-chX

8594 UGGUACGAUACGGAAGAUGGCCCA

1

0 transposon

LINE

F

8595 AGCGUGCUGGAGGUAUCAGAACUGC

1 no match

8596 GUCGCUACCGGGUCUUCGUCUGCAC

1 no match

8597 GGCGCUAAUCCAGGACGACGCAGU

1

1 transposon

LTR

blood

8598 CACACAAGAUGACGACAUUAAUGCAACC

1

1 transposon

LINE

G2

8599 GACACCGAAUUAGUCGACAAUGAGAA

1

0 transposon

LTR

micropia

8600 AGAGCGUCCGACGAAUACCCUGGGGGG

1 no match

8601 UCUGUUUCAUCGUUAGACGGCUCGGGC

1

0 AT-chX

8602 CUCACAAUUAGGUGGGUCCCGGGACAA

1

0 transposon

LINEbaggins

8603 CGCGGAAGACGGAAAGACCCCAUG

1 no match

8604 UGAUUUGUCUUGAGUAUAUUCCUAC

1

0 transposon

LINE

Cr1a

8605 CACUCAACUCUUCGCCCACCGACU

1

0 transposonLow̲complexity

F-element

8606 UCGUCCGGUAUGACAUAAACCAGUU

1

0 no annotation

8607 AAGGCCUUGAUGCCACUCAAAUCGUC

1

0 Su(Ste)8608 UUUCCCGAAAUCCGAGUGAAUAUGGC

1

0 no annotation

8609 CCGUGAUCGUCUAGUGGUUAGGACCCC

10 ncRNA

8610 UAUUAACUACUGGUAUGACUGAGGA

1

0 transposon

8611 AUGUAGUGACGAAAAAUAACGAUACG

1 no match

8612 AGCACUCGCCGAAUCCCGGGGCCGAGG

1 no match

8613 GGGCUAAUGACGGUACCGUAAG

1 no match

8614 GAAACCGAAAAUCACAAUUUGCC

1 no match

8615 CUUGAAAUGAUGAUGACUAAGGUCGCA

18616 ACCACCCUGACCGCGCCCGAUCUCGU

1 no match

8617 CAGACAUCUACUUCCCCCCCGCUCCUAU

18618 CCAGGGAGUUCUUCGAUGUGGCAGCGUU

1 no match

8619 GUAACUUCGGGAUAAGGAUUGG

10 ncRNA

8620 CAGACAAAGACUCCGCGUUUAUAAGCAC

1

0 transposon

LTR

Idefix8621 GCGAGAAUAAACGAAAUACAGUGGGAAA

1

1 transposon

LTR

diver28622 UUCCGAGGAACCAUUGAUCCAGCUGC

1 no match

8623 GACCGGCAACGACGUUCCACACGCA

1

0 no annotation

8624 UCCAAAAGAAACGCACGCGAAAAGUAA

1

1 no annotation

8625 GGUGAUGUCAACGUUUGAUCCCCUGGA

1

0 transposon

LTR

ninja-Dsim-like8626 ACAAUCUUAAACGUAAGGUGAUGGA

1

1 no annotation

8627 UAGAAAUAUAAAAUGUAUCCGGAGCG

1

1 transposon

LTR

8628 AAACUGAAUAAACGAAAUGGAUGACACAC

1

0 transposon

LTR

8629 UGGAUUAGGACUCAGAAUUUGAAGA

1

0 no annotation

1 transposon

CG11444-RA¦CG11444

LSU-rRNA̲Dme
Low̲complexity

F-element

LINE

Cr1a
rRNA

LTR

HMS-Beagle

LTR

invader4

1 no annotation

0 transposon
0 Su(Ste)

Su(Ste)
LTR

Max
rRNA
tRNA

LINE

R1-element
CG11719-RA¦Mst98Ca

AT-chX-A

AT-chX-B

Su(Ste)tRNADNAtransib2

LTR

invader1

0 no annotation
1 transposon

rRNA

297
invader4

8630 AGGUCUCCGGACGUGAUCACUGUGAC

1

0 ncRNA

8631 GAGAUAUUGAGCGACUUUCCCCGUAG

1

0 transposonrRNA8632 CCCGAAAAAUCCCCGGCUGCGAC

1 no match

8633 UGCGUCGGGUCUUCGAGCGGUGCGGC

10 coding gene

CG5442-RA¦SC35

8634 AGCCGUCGAGAGAUAUCGGAAGAGU

10 ncRNArRNA

8635 GUCGGAGGCUGGCGCGGGGGGGU

1 no match

8636 GAGGCAAUCACCGAGAGCAUCAACG

1

0 transposon

8637 CGGGGUUGCGAGCAAGUUGACCA

1

0 no annotation

8638 AAGAUUUGAUGUGUAAACUGAAC

1

0 coding gene8639 AAACUUCGGGAUAAGGAGUUGGCUCU

1 no match

8640 CGGGUAAAGAAAACCACGUAGCCGA

1

0 transposon

LTR

FB

8641 ACGGAAUGGAACCGAGCUCUGAA

1

1 transposon

LINE

X

8642 UGCACAGAGACCUGAAACUCGCAAC

1

0 transposon

LINE

Doc3

8643 CCUGCUCUCCCGCUCUAUUGGCUCCAA

1

0 transposon

LINE

F

8644 ACCCUGAACGCGCCCGAUCUCGUAAA

1 no match

8645 GAAGCUUAUCCUUUGCUUGAUGAUUCG

1

0 ncRNA

8646 UCGGAUACACGAAGCUGCACCACCACC

1

0 coding gene8647 AUGGAACACAUAGAGGCUUCGAG

1

0 transposon

8648 UCUCAUCGUCGUAGAAGAAGCCCGAGG

1

1 Su(Ste)

Su(Ste)8649 AAGAAUCCGGAUGGUAUUCGACCCUUUA

1

0 coding gene

CG32240-RA¦CG32240

8650 CAAGAUAUGACCAAAACAAAGCAACGU

10 Su(Ste)

Su(Ste)8651 GCCGGGCCGUACCCAUAUCCGCAGC

1 no match

8652 GCCUCCAAGACGAGCGUUGCUUCAC

1 no match

8653 AUUACGACGCGAGAGGUGAAAUUCUU

10 ncRNArRNA

8654 GCGAGAACCGGGAUAUUAAUUUGG

10 coding gene

CG6815-RA¦bor

8655 ACUGCCCGACGAGCAAACCCGCGUA

1

2 coding gene8656 GUAUGACCCCUGGUACUGAAAUGC

1

0 transposon

8657 GCCCCCGUACGUGAAAUGACCUGUGUG

1 no match

8658 ACUGAGGUGCGAUUAUUGCUAGUUGAA

1

0 ncRNA

8659 AAAAACUAAACUAUAAAGCCGGGG

10 transposon

8660 ACACGGAAAACUACCAGGUCCGAACA

1 no match

8661 CCAGUCAGUAGAGCACUACCGCCGCC

18662 GUGGAGCCGGGCGUGGAAUGCGAG

1 no match

8663 ACACAGAGUACGGGGCUUACUGAAGUCA

1

1 transposon

8664 UCCGAGGAACCAAUUGAUCCAGCUGCU

10 Su(Ste)8665 CCUGGCGGCGAGUGGCGAACGGGUGA

1 no match

8666 UAGAAUAUUAACUUCUGUAAACGGCGGC

18667 AACUGAAUAAACGAAUGGAUGAC

1 no match

8668 GCCUGAUGACCAUAGCGAGUUGG

1 no match

8669 AGAGGGACGGCCGGGGGCAUUCGUAU

1 no match

8670 UGCUCUCGGAAUGUAUGCCCGAUAUAC

1 no match

8671 GAGCCAGUCCCAGAAGAAGCAGC

10 coding gene8672 UAUACUCGAAUGCCAUUUGGUUU

10 transposon

LTR

Quasimodo

8673 ACGUGCAACAAACCCCGACUUCCGG

1 no match

8674 ACUGGACGAGGCUACGACAGCAGAG

1

0 transposon

LINE

Rt1b

8675 UGAUGACCGAAAUUUGGAAGACGGA

1

1 repeat8676 AGUGAGGACAGCCCUAGAUGAACAA

1

1 transposon

8677 UCGGCUCAUCACAUCCUGGGGCUGG

1 no match

8678 CUAGACUCGAAAAUUCGUUUUAUG

18679 CGGCGGGGAAGGUGGCUCGGGGGGC

1 no match

8680 CUUCUCGUUGUUGAAGUGAUUGUUG

1

0 no annotation

8681 CCCCAAAAGCAGACGAGGUAACGUACC

1

2 transposon

8682 GAUUCCGAAGAGGGAGCCUGAGAA

1

1 ncRNA

8683 UGAAAAAUGAUCCCGUAUGCGAGAGU

1

0 repeat8684 UCCCUUCUGAACGAGUUCGAUAUAA

1

0 transposon

DNA

H

8685 GCAUCCUAGAAUCGACCGACCAGCUA

1

0 transposon

LTR

flea

8686 UCCAAUAUCACCGCGGAGACUGUCGUA

1

1 transposon

DNA8687 AAGACGUCCAGAGGAGGCGAGAAUU

1

0 AT-chX

8688 CUGCUUUACAUACCCUUUGGUGCCC

10 transposon

8689 GUGGCAAGAUGCGAUGCCGCCGCCCCAG

1

1 coding gene8690 UCCGAAUCAAAUGCUACGUAACCAAG

1

0 transposon

8691 UUGGGUGCGAGAGGCCCUGGGUUC

12 ncRNA

8692 CAAGCUAGACUAUGUAUCCCCGGGCA

1

1 transposon

LINE

Doc

8693 UGAUUGCUAACAAGAACUCGGAGGA

1

1 transposon

LTR

flea

8694 GUCAACUGUGAGGGGAUCCUCAA

1 no match

8695 CACGUACUCAGACAAGAUAUCCCUA

1

0 transposon

LTR

gypsy

8696 ACCACCCUGAACGCGACCGAUCU

1 no match

8697 CAACCCAAUACACACGACUGACAC

1

0 transposon

LINE

Cr1a

8698 CGAAUCGAGACCGGGCCAGAAA

1

0 transposon

LTR

G4

8699 ACCAAGCUUUUGGGCUCCGGGGG

12 ncRNA

8700 UCAUUCGAGACCCAACGGCACGUGA

1

1 transposon

LINE

INE-1

8701 GAAACUCCAUAAAAAUCAUUGCCGCC

1

0 transposon

LTR

accord8702 UGCUCUCGAACGUAUGCCCGAUAU

1

1 transposon

LINER1-element

8703 AUGAUCUCGGAAGCUAAGCAGGGUC

1 no match

8704 GGAAUAAUGGAAUAGGACCGCGGUU

1 no match

8705 AAAAGACAGGAGAGGCUUCGUACGCAG

1

0 transposon

LINE

Rt1b

8706 AAGACGACGUAUAGGGCCUGACGCCU

1 no match

8707 GACAAGCGCAAGGGCGGUCCCGGU

1

0 coding gene

8708 UGGCCGAUGGAGUGGGCGGUUGGCGA

1

0 coding gene8709 CUCGGAGUUAGAGUACAUGAGGUACA

1

1 transposon

LINER1-element8710 GAUACUUUUAUCAGAGGCCUUCGAGGA

1

0 transposon

LTR

HMS-Beagle

8711 UCGAGCGAACAGUGGUAUGACGCUACGU

10 ncRNA

8712 AGAGACAGGAUCAUAUGCCGCCGCC

1

0 transposon

LTR

LINE

F
CG9603-RA¦CG9603

rRNA
CG8416-RA¦Rho1
LTR

HMS-Beagle

CG5977-RA¦spas
DNA

Bari1
snRNA

LINE

1 repeat0 transposon

3S18

G2
trf

LINE

baggins
Su(Ste)LTR

mdg3

CG10869-RA¦CG10869

SAR̲DMLINE

0 Su(Ste)baggins
Su(Ste)Low̲complexity

F-elementrRNA
HETRP̲DM

1360
AT-chX-B

LINE

Circe
CG4994-RA¦Mpcp

LTR

diver2tRNA

rRNA

CG3481-RC¦Adh
CG15035-RA¦CG15035

rRNA
LTR

springer

8713 AGGGUCGGGUAGUGAGGGCCUU

1 no match

8714 GCAACAUCCAGACCAAACGAGUCCAA

18715 GGCUCCGGGGGGAAGUAUGGUUGCA

1 no match

8716 AGAGAGUGGACGGGAGCGGCGGGGGCG

1 no match

8717 CACGAAAUGGACCCGAACGCACUGAG

18718 CAUCUGUGGGAUUAUGACUGAACGC

1 no match

8719 CAGGCCGAGAUUGAUCGCAUGGUGA

1

0 coding gene

CG18743-RA¦Hsp70Ab

8720 GAUUCCGGAGAGGGAGCCUGAGUA

1

1 ncRNA

rRNA

8721 UGACUCUCGAAUGUAUGCCCGAUAUUU

1 no match

8722 UCGAACGAUAAACGGUGCUAACCAGU

1

1 transposon8723 UCCGCCCCCUGAACGGAACUCAGC

1

0 no annotation

8724 GACUCUUAAUCUCAGGGUCGUGGGUU

10 ncRNAtRNA

8725 UCGAGGGAGACGUCAGCGGGUACAUA

1

1 coding gene

CG13898-RA¦CG13898

8726 AAGCACGGUACCGAAGCGGCGGAC

1 no match

8727 ACUCGCCGUAUCCCGGGGCCGAGGGA

1 no match

8728 AAGAGGGACGGCCGGGGGCAUUCGUAU

1 no match

8729 CCUCAACUGUGAGGGGAUCCUCUAA

1 no match

8730 UGCCUCAACAUUUGGUGACCUCGAUA

1

2 no annotation

8731 AAGGCUGGAAUGAAUGGUUGGACGAA

1

0 ncRNA

8732 GCCUUACGAAACGAAACCCGAUCAACA

1

1 transposon

LTR

gypsy

8733 CUUCGACCCCGCCAGUGAAACCAA

1

0 transposon

LINE

Doc

8734 CAGCCAAGAGUUCCCGUGGUAGGCAGUA

10 ncRNA

7SLRNA-RA

8735 GAAUGGAGCGAGGCUGCCCAGGAGU

10 coding gene

CG31501-RA¦nxf4

8736 GAAGGUGGUUUUCCCAGGGCGAGGC

1 no match

8737 ACUCCGGAUGUGCUGACCCCUGCGAU

1 no match

8738 AACUUCGGGAGUAAGGAUUGGCGUCU

1 no match

8739 ACCUGAUGACUCUUUGACAUAUA

1

8740 UGGACAAAAAAAACGAAUGACACAG

1 no match

8741 CAACCAGAGAUCUAGAGGGCCCAAGAG

1

1 no annotation

8742 AGCGAGGAUAGGCCCGUAAAAAACAGCC

1

1 coding gene8743 AAUCCGGACAAACACACAAGACC

1

0 transposon

LTR

8744 AGACAGAGCAAAACCCAUGACCAGC

1

0 transposon

LTR

8745 UGAAUCGUGCAUGCCACCUACGGACC

1

1 transposon

LINE

Rt1b

8746 GCUGUAUACCGAAGAUGUGAGUGCU

1 no match

8747 UACAGAGUCGAAGCGGUUACAAGA

1

0 transposon

LINE

Rt1b

8748 CCGAACUUGAGACCGCCCUGGUAC

1 no match

8749 AGACGAAUUUGUGGGCCGGUAUU

1

2 transposon

LTR

Rt1c

8750 AAAACCUGAAGAUGAUCCUGAGUAU

1

2 transposon

LINE

Helena8751 CAGUGACGGAGCCGGACGACCUC

1

0 transposon

LTR

Quasimodo

8752 GCCCGGCUAGCUCAGUCGGUAGAGCAUGUA

12 ncRNA

8753 UCGAGAAGCGAACCCGGCGAACUGAA

1 no match

8754 UGUGCUAGAAGACGAUUUUUCGGACCG

1 no match

8755 AAGAAUCUCCGCAAAGCCUGAGGA

1

0 transposon

LTR

diver28756 AAAUUACAAAGACGACGGCCCACC

1

0 transposon

LTR

springer

8757 GAAGAAGAGAUGUCAGGUGAGUU

1

0 transposon

LTR

ninja-Dsim-like8758 UGUUCCACAUGGCGCUGGUUUACGGG

10 coding gene

CG18418-RA¦CG18418

8759 UCCGAGGAACCAACUGAUCCAGCUGC

1

1 Su(Ste)

Su(Ste)8760 AGCGCAACCCUUGUCAUUAGUUGCU

1 no match

8761 UCCGAUUUCAAGUACCAGACAAACA

1

0 repeat8762 CGUAUAACAACUACUUCUCGGUGA

1

0 transposon8763 CUCGCCGAAUCCCGGGGCCGAGGGAGUC

1 no match

8764 AAACUUCGGGAUAAGGAUUGGCUCUGA

1

1 ncRNA

8765 CACGAUGAUCGAUGACGAGCUACU

1

1 transposon

LTR

ninja-Dsim-like

8766 CAAGCUAGACUAUCUAUCCCCGGGU

1

1 transposon

LINE

Doc

8767 UCAUACGGGUAGUACAACUUACA

1

0 ncRNA

8768 CGCUCGAAAAAAGGUUAUACCUAAGUUG

1

0 transposon8769 GGCGGGUGUUGACGCGAUGUGAUUA

1 no match

8770 GUGGAGCCGUACCUGUUGGUUUGUC

18771 GUUCGAGUCCGACCCUCGGUACCA

1 no match

8772 ACUACCAUCCCACGGAACACCAGAGCAAUGCC

1 no match

8773 UGCAACGAACCGAACGGAGUCCAC

1

0 no annotation

8774 CAGACAGAGAGGCUCAUUUACAACCAC

1

0 transposon

LTR

McClintock

8775 CGAACAACUAGAGCACCGCAUCCGG

1

0 transposon

LTR

Tirant8776 CGAAAUGAUCGAGUGGAUAUACAGUA

1 no match

8777 CAUCGCGAUGGAUCUGGAGGCCC

1 no match

8778 UGAUGAGACAUUCCCGUUUCUCGCGAC

1

1 transposon

LTR

rover

8779 CCUACUCGUAGCCGAAACCCACUUC

1

0 transposon

LINE

G6

8780 AUGGUUUCAACGGGUAACGGGGAAU

1

1 ncRNA

8781 UGAUAAGACAUUCCCGUUUCUCGCGAC

1

1 transposon

8782 GCCGGAAGCGAUCCCUCUGCUGAAGA

1

1 AT-chX

8783 UCAUUGCUAUGUUGACGCGGAUU

1

1 transposon

LTR

DM88

8784 CAACCUAUGACAAAUCAAAACCAGUA

1

0 transposon

LTR

Idefix8785 CAAAGUAUCCGAAUGCCCUGGCGCA

1

0 coding gene

CG41423-RA¦CG41423

8786 UUCCUCGGAAUCAAGGCCAACGAGU

1

1 Su(Ste)

Su(Ste)8787 AAAAGGACAAUUGACGGUACCGCAU

1 no match

8788 AUCUCACGGAACACCCGAGCAAUGCCACC

1

1 transposon

LINE8789 AGAAAGAUAAAAUGUAUCCGGAGCGA

1

0 transposon

LTR

8790 UCGAUAUUAUCCCUGCACUACGAAGC

1

1 no annotation

8791 CCAACGAACGGUUAAGCGCGACAUC

1

0 transposon

LTR

HMS-Beagle

8792 GCUUCACUUGACCACGAACCGGCCUUCC

1 no match

8793 UGGUGAACGACGGCGACAGCC

1 no match

8794 AUGGACAGAUAGAAAGAUUUCACUCCA

1

0 transposon

LTR

HMS-Beagle

8795 AACGAGCGCAACCCUCGCCAUUAGU

1 no match

0 transposon

LINE

Rt1b

0 transposon

LINE

Doc3

2 transposon

LTR

GATE

mt

LTR

Dm88

CG14472-RA¦poe
opus
297

tRNA

RSP
LTR

accord
rRNA

rRNA
LTR

0 ncRNA

opus
rRNA

rRNA
LTR

rover
AT-chX-A

G2
297

8796 GCUCCGAGGUGAUUUUUCAUAUUG

1 no match

8797 GCGUUCGUUGACGUAGAUGGCUGC

18798 AAGACGAGAAGACCCUAUGGAGCUU

1 no match

8799 GCAGAACUCCGAUGGCGAUAGGAA

1

0 no annotation

8800 CAAAGCAUUGUGAUGGCCCUAGCGGU

11 ncRNA

8801 AACGAGAAUAUACACCGAGACUUACA

1

0 transposon8802 CCAUCAGAGACUGCGGUGGCCAAC

1

0 coding gene8803 GAAAGAUGGUGAACUAUGCCUGGGC

1 no match

8804 CGGCUCCGGGACGGCUGGGAAGGCC

1 no match

8805 CCGGGUGGCGGAAUGGUAGACGCGC

1 no match

8806 GCUAACGAUAUCCACAUUCGCUGA

1

0 transposon

LINE

Doc3

8807 AACGAUUCUAUUUUUCCGAACCC

1

2 transposon

DNA

FB

8808 CACCCUGAACGCGCCCGAUCUCGUU

1 no match

8809 ACGAGCGCACGUGUUAGUACCCGAAA

1 no match

8810 AAGGCUGAGGCGUGAUGACGAGGCACU

1 no match

8811 ACAUUUGAGAGUGUUUGGUGCAA

1

0 transposon

LINE

Cr1a

8812 UACGAGAUUUGUGUUAGCCACUGAGA

1

0 transposon

LTR

G4

8813 AACUAUAAAAGCGAGAAGGUUGA

1

0 transposon

LINE

INE-1

8814 GAGUACUUCAACCAGACACUGGAC

1

0 no annotation

8815 UAGAAGCAGUUUGGGGGGCAUUAGUAUU

1 no match

8816 AACCUCGGGAUAAGGAUUGGCUCU

18817 CCGAGCUUGAGUUUGCCGAUGUUU

1 no match

8818 GGAAGCCGAGAUGUGCACCACGUGCCCC

18819 CCGAAAGUAUAUGAGAAGAACUACC

1 no match

8820 UCCGACGACUGUGCUACUCCAUCCAAA

1

0 transposon

LTR

GATE

8821 UGCGCAGAGUGUUGCCAGUACUGGAU

1

0 transposon

LINE

G

8822 CGUUCUGGGUAAAUAGAGUUUC

1

0 ncRNA

8823 ACAAACUUAACUAUGUUCCCCGGGA

1

0 transposon8824 UGCCUCAACAUUUGGUGACCUCG

1

0 no annotation

8825 GGUCAAGUUAAGAAGCGCAUACGGUGG

1 no match

8826 GAGGCCCUCGUAAUUGGAAUGAGUA

1 no match

8827 GCCAACGAUCGAGCGUACUUGUCCGUGA

1 no match

8828 UUGGCAUUACUCGGUACUGAUUU

1

1 no annotation

8829 GGGUGCGAGAGGCCCUGGGUUC

12 ncRNAtRNA

8830 CAUCCUGGCAACAGGAACGACCAUAA

1

0 ncRNArRNA

8831 CGAGGCCCUGUAAUUGGAAUGAGU

10 ncRNA

rRNA

8832 UUGUUCCCGGCGGUGGCGUCGUCCC

1 no match

8833 GCGGAUGUGACCUGCGUUCUGGGUAC

1

0 no annotation

8834 CCCCCAGACACUCGAUCACCGAGAC

1

0 transposon8835 UCAACCGGACGGGCCUAGAGUUAUUCC

1

0 coding gene8836 AUAAGGAUGAUGAUACCGACUAAAGGC

1

0 no annotation

8837 AAACGGACUUCCCCCGAUUCGGAUA

1 no match

8838 CGUGACAGGACGAUUGCAGGGCGUA

1

2 no annotation

8839 UACUGAGACAUGGUGACAUCGGCCAA

1

0 no annotation

8840 UGUGGAUCGGAGUGAAAGGCUAAUCA

1 no match

8841 ACAACAAACAACACAUACCCGCUGGCCA

1

0 transposon8842 UCCCAGCUCGGGGAGGUGGUGACGAAAA

1

1 ncRNArRNA

8843 GAGAAGCAGCAAUGGACAUCCCGUA

1

2 coding gene

CG15530-RA¦CG15530

8844 AUAGGGAACGUGAGCUGGGUUU

12 ncRNArRNA

8845 AGCCUGAGAGGUGAUGCGUAGCCG

1 no match

8846 GCUGCGGUGUCCGAGUGGUUAAGGU

11 ncRNA

8847 GCAAUAACUGUAUUUAGCCCUGAGAA

1

0 transposon

LTR

GATE

8848 UGACAUUGUGUGGGAUCCUUCGAUA

1

0 transposon

LINE

G2

8849 UCGAUGCUGACCCCCUACCCCCACC

1

0 transposon

LINER1-element

8850 ACCAACCAGACUGACCUCUACCAAAU

1

2 transposon

LINE

F

8851 UAACCGGGGCUAAGCAUAUUACCGA

1 no match

8852 UGCGUCGAGGCCCAGGAUUGCG

10 transposon

LINER1-element8853 CUCAGGACUCUGAAUCCUGCGAUCCGA

1

0 ncRNA

8854 GUAACAACGAAGAUGAUUCUGGCCCU

1

1 transposon

LTR

invader48855 CAACAUAAUGGAAAAUCUCUGGU

1

1 transposon

DNA

Tc1-2

8856 GUCCUGGGCUGCACGCGCGCUACA

1

0 ncRNArRNA

8857 AGCCACACUGGGACUGAGACACGGCC

1 no match

8858 GCACACAGAGGAAGAGCAGAUGAGAGCA

1 no match

8859 AAGGAGUCUAACACGUGCGCGAGUU

1 no match

8860 UGGCACAUCUCGACACCCGUGGCACU

1

1 coding gene

CG13340-RA¦CG13340

8861 GGAUUCAACUGUGAGGGGAUCCUCAA

1 no match

8862 CAGCUGCCUGCGACCCACGCCGCC

1

0 coding gene

CG10043-RA¦rtGEF

8863 GACAACCAGAGAUCUAGAGGGCC

10 no annotation

8864 CCACCCUGAACGCGCCCGAUCUC

1 no match

8865 GAACCUGCUGAAUGAUUGCAUCG

1

0 coding gene

CG8318-RB¦Nf1

8866 CGACACAUCCGGUCGAUCCAGCAAA

1

2 coding gene

CG15258-RA¦CG15258

8867 UGCAAUCGAAACGGGAAACUUCAUC

1

1 coding gene

CG41521-RA¦CG41521

8868 UGGGAACACCGCGUGUUGUUGGCCCUU

1 no match

8869 CGCAAUACUUAGCCUAUCUAGAUGC

1

1 transposon

8870 GUUAAUUCCGAUAACGAACGAGA

1

0 ncRNA

8871 GACACUGACAAACGCGAGUAACUACGG

1

0 transposon

LINE

TART-A

8872 ACGAGAGAUAUCCGUCUAGGUGA

1

0 transposon

LTR

micropia8873 AAGAGAUGGAUAAAAUUUCUCAUCUA

1

0 transposon

LINE

Cr1a

8874 GCCCUGAAUCGUACCGAGCGUAG

1

0 transposon

LINE

Rt1b

8875 CGUAAACGAGUGUUAUUGUGGGCCGG

11 ncRNA

8876 UCCAAUAUCACCGCGGAGACUGUCGCA

1

1 transposon

LINE

Doc4

8877 GCCCGAAGCGUUUACUUUGAAAAAAUU

1 no match

8878 GCAUUCGAGACUCAACGGCACGUC

10 transposon

LINE

Rt1b

1 transposon

LTR

HMS-Beagle

rRNA
LINE

Doc3
CG12717-RA¦CG12717

1 ncRNArRNA

1 coding gene

CG3982-RA¦CG3982

rRNA
LINE

LINE

Doc3

G2
CG40635-RA¦CG40635

LTR

GATE

tRNA

tRNA

LINE

Doc2
rRNA

rRNA

8879 CGCACGCCGUUUGCUGGUGACCCAUGU

1

1 coding gene

CG11253-RA¦CG11253

8880 AUCCGCAGAGGGAGCCUGAGAAACGG

12 ncRNArRNA

8881 AACUUCGGGAUAAGGAUUGGCUCUU

1

1 ncRNArRNA

8882 GAAUCGGAAUGAGCGGGAGUGCG

10 coding gene

CG13733-RA¦CG13733

8883 GGCUUUGAGGGGCGCCGUAGUUACCAC

1

1 no annotation

8884 GUUCAAUCCCCGGCAUCUCCACCA

1 no match

8885 GAUCAGAUACCGCCCUAGUUCUAACC

1

0 ncRNA

8886 UUCAACUUUAACCCAAGAGACGUGAC

1

0 transposon

8887 GCCGAACUUGACGACCCACGAUAA

1

0 Su(Ste)

8888 GAUGACUAUAUCAUUCUCGGGAUUAU

1

0 transposon

8889 AGCAGAACUCCGAUGGCGAUAGCAAC

1

0 no annotation

8890 GUAGCCAAAUGCCUCGUCAUCUA

10 ncRNA

8891 AGAGCAUAUAAUGCCCCGAAGGUAGUCCC

1

2 transposon

LINER1-element8892 CAACAACGUUCGCGUGAUGACCC

1

0 transposon

LINE

G6

8893 ACGGAAUGGAAUCGAGCGCUGAGUAGG

1

0 transposon

LINE

X

8894 GCAAAGUGAACACGUCGCUAAGCGAA

1

0 ncRNA

8895 AACAUUAACCGAAUUGCCUCGUUGU

1

1 transposon

LTR

gypsy48896 AGACUCCGUUAGUAGUGGCGAGCGAAC

1 no match

8897 GAAUCCAACAAUCCAUAGACCAGGCGA

1

0 transposon

LTR

G4

8898 CCAGAUAGGACGCCGAUUUUCCG

1

0 no annotation

8899 AACGGGCGAAAGACUAAUCGAACCAUCU

1 no match

8900 GCCACCCUGAACGCGCCCGAUCUCGUC

1 no match

8901 UCUCAUCGUCGUAGAACAAACCCGA

18902 AAUUGCUAUAACGAACGAGACCUUAACC

1 no match

8903 GCGGAGAGAAGACAAUUUUGGCC

10 transposon

8904 GUGGCUUUGAGAGGCGCCGUAGUA

1

1 no annotation

8905 AGCAAACCAAUCCCAACCAACCCCGU

1

1 transposon

8906 AGAGUGUCCUGGGAGUUCGAUAUGC

1

0 no annotation

8907 UAACGAGAGAAGCAUUUUUUGCCGC

1 no match

8908 ACUUCGGGAUAAGGAUUGGCUCUG

10 ncRNA

rRNA

8909 GCCGUACCUGUUGGUUUGUCCCAUUAU

1

0 ncRNArRNA

8910 CUUAAACGAGUGUUAUUGUGGGCCG

10 ncRNA

8911 CGGUGGGCGAAGAGUUGAGUGGGGC

12 transposon

8912 GCCAACGACCAUACCACGCUGAA

1

0 ncRNA

5SrRNA

8913 GAACCUGAGACCGCCCCUGGACGACC

1

1 Su(Ste)

Su(Ste)8914 GAGCUCCCUGAUCGAUGACUAUC

10 coding gene

CG14708-RA¦CG14708

8915 UGAGGCGAAUUCAGUGAUCCUAUGCU

1 no match

8916 UCGAAACAAUAGACAGAGCAACGCC

1

1 transposon

8917 ACCCUCGAGGUAGAGCCAUCGGACACC

1

0 repeat8918 GAUACAAGCAAGAGAUGUCCAGU

1

0 transposon

8919 GCAGCCAAGAGUUCCCGUGGUAGGCA

10 ncRNA

8920 CCGAAGAUGACCAAGUUGGCAACCGCU

1 no match

8921 ACGAUAUUAUUUCUGGCCCGGUCUCGA

18922 CCAGCUAAGGUCCCUAAAAUUGGCUA

1 no match

8923 ACCCUGAACGCGCCCGUAUCUACGUC

1 no match

8924 AGAUGUCCGGGGCUGCUGCGCGCC

1 no match

8925 UGUUUCAUCGUCAGACGGCUCGGGC

18926 ACCACCCUGAGCGCGCCCUAUCU

1 no match

8927 CGCUUUGAAACCGAAGAGACGCCGGC

18928 UGAGUGUCCCGCGGGGCCCGAAGCGUU

1 no match

8929 UCAAAGAGACGCUUGAUAGCCUAGA

1 no match

8930 UGCGCGAAGAAGGAGAACGAGAAGG
8931 UGUUUCAUCGUUAGACGGCUCGGGAG

rRNA
DNA

Su(Ste)LTR

gypsy8rRNAalphagamma-element

1 Su(Ste)0 transposontransib4

Su(Ste)
DNA
LINE

1360
G2

rRNA
Low̲complexity

LTR

F-element

Rt1c
trf

LTR

rooA
7SLRNA-RA

LTR

1 AT-chX

G4AT-chX-B

0 transposon

LTR

G4

1

0 transposon

LINE

G6

1

1 AT-chX

8932 GAGGCAAUCACCGAGAGUACCGAGAU

1

0 no annotation

8933 AAUACAUGCCGACGGGGCGCUCGACCCCC

1 no match

8934 GCCACGCAGACGGAGGCACAACCGGUUCC

18935 GGACCUACUGUGAGGGGAUCCUCAA

1 no match

8936 UGCCGGAGCGAGGAGGAGGACUAGCU

18937 AGUCCCGCAACGAGCGCAACCCUCGCCA

1 no match

8938 AGGUGGGAGGCUUUGAAGCGUGGACGCC

1 no match

8939 AACUGAAUAAACGAAAUGGAUGACUAC

1 no match

8940 GACCAUAUCCGGAGACGCGGCGCUAG

18941 GACGUGGCGACCCGCUGAAUUUAAG

1 no match

8942 ACACAACACACAUACCCGCUGG

1 no match

8943 GAAGAAGUAAAUAAGCUCAGCCAAGG
8944 GGAUACUAAGCAGGGACGUUAAUGA

AT-chX-B

0 coding gene

CG30324-RA¦CG30324

0 Su(Ste)

Su(Ste)1 transposon

LINE

F

1

0 transposon

LTR

Quasimodo

1

0 coding gene8945 UCGAGGAUGAACUGGGUGACCCU

1

0 transposon8946 GGCUUAAUUUGACCCAACACGGGA

1

1 ncRNA

8947 UACUCUGGAAGGACGACCACGUUG

1

0 transposon

8948 CGUACUUCGGGAUAAGGAUUGGCUCU

1 no match

8949 AUGCCGAGUCGUCGUAUCGAGUAAC

18950 AGCCGGACGGUGGCCAUGGAAGUCGG

1 no match

8951 GCCAACGACCAUACCACGCUGAAU

18952 ACCGAGAAACAAGCCUCCGUC

1 no match

8953 UUCGAGACAAACGAUACUGUUCGGCC

1 no match

8954 GCACACAGAGGAGAGCAAAUGAGAGCA

1 no match

8955 GCCCGUAAAAACGACUUGGUUGA

1

0 transposon8956 AUGAGACUACAAACGGAUUGCGGACC

1

1 no annotation

8957 UACCUAAUCCCUAUACCAACGAGCAGC

10 coding gene8958 GUCUAUGAGAUGACCGUAAUGAGC

1

0 transposon8959 ACGUCGCUUUUUGAUCCUUCGAUGUCG

10 ncRNA

8960 GCUUGCACCAUCACCAUCACCAU

1

2 coding gene8961 CUCUGAGAAAGCAGACGCGUGAGUA

1

0 transposon

pseudogene
LINE

G2
rRNA

LTR

ninja-Dsim-like

0 no annotation
0 ncRNA

5SrRNA

LTR

gypsy
CG13958-RA¦CG13958

LTR

ninja-Dsim-likerRNA
CG11505-RA¦CG11505

LTR

Max

8962 CAGCUCGGGGAGGUAGUGACGAA

1

0 ncRNA

8963 CUCGCAACCAUUCCUGAACUUGAUCAUC

1

0 no annotation

rRNA

8964 UCACUGUGAGGGGAUCCUCAA

1 no match

8965 AGACAACCAGAGAUCUAGAGGGCC

10 no annotation

8966 GCAUUCAAUACAGCGAGAUGGCCCAUU

1

0 transposon

LINE

Rt1a

8967 UCUACGAGAGUCUGAAUAUUGUUGA

1

0 transposon

LTR

flea

8968 GGAGAUGAAAAUGUAGUGAACGCCA

1

0 transposon

LTR

invader48969 AAUCCCAAACUACUAAACUACGAAA

1

1 transposon

LTR

McClintock

8970 GGCAGCGCCGCGGAGCCUCGGUUGGCC

1 no match

8971 CCAGACUUGACCUCCUUCGACGCGUA

1 no match

8972 GAGGUAACGAUGGAGUUUGACGGCAG

1

0 transposon

LTR

flea

8973 CAUGGCCCAAAUCGUUGCGACGGUCC

1

0 transposon

LINE

HeT-A

8974 UGAGAGGUGGCAGAGUGGUCGAAUGUA

1 no match

8975 GACUAUGGACGAUCAAAGACCCUGU

18976 AAACAAUGGAAAAUAAUUAUGCGGUUGG

1 no match

8977 GUGGCUUUGAGAGGCGCCGUAGUUUU

1

2 no annotation

8978 UGACGCCUUGCGUGUUACGGUUGUU

10 ncRNA

8979 UAGGGAUGAACCUUCACAUGAUGA

1

0 no annotation

8980 CCGAAGAGAAAGAAUAUUGAACCCCC

1

1 coding gene8981 CCUGAAAGCAGACGAGGUAACGUACC

1

1 transposonLow̲complexity

F-element

8982 UAUUCCCCAUGAACGAGGAAUUCCCAGU

1 no match

8983 AUGGUGACCACGGGUGACGGGGUAA

1 no match

8984 GGUCUACUUCCCCCCAGACACUCGA

1

0 transposon

LINE

G2

8985 GCCAGGUUGGCCGAGCGGUCAAAGGCC

12 ncRNA

8986 CACUACAACAAUAAAUCUAAAGGGCC

1

1 transposon

8987 AGCCUGGACGGUGUGAGGCCGGU

1 no match

8988 CGAGUGUUAUUGUGGGCCGGUACUAUU

18989 ACUCGCCGAAUCCCGGGGCCGUGGGAG

1 no match

8990 AAUACAAACAGAAUUCCCGAAUGAGAGU

18991 AAACCGGGCCAGGCCAGUGCUCUUGUG

1 no match

8992 ACAGAUGAUUUUUGGAUAGCCACA

1

1 no annotation

8993 CAGACAUCUACUUCCCCCGCUCCU

18994 GCAGGAACUCCCGACUUUGAUGA

18995 UUAUACCCAGGUGAUUACCACUAU

1

0 Su(Ste)

Su(Ste)8996 AAGAAGGUAAACGGGUGGGGGUC

1 no match

8997 ACCAUGGUUGCAACGGGUAACGG

10 ncRNArRNA

8998 GGCGGCGGCGGCGACUCUGGACGCG

1 no match

8999 UCCUGAACGUAGUCUCUCGAGAGCGA

1

2 transposon

LTR

invader1

9000 AAACCUAAAGAUGAUCCUGAGUC

1

1 transposon

LINE

Helena9001 GACGAACUACCGAGCCCGAGCCUUA

1

0 transposon

LTR

Max

9002 UAAUAUGAUAUUUAUUUGAUGUGAACGA

1

0 no annotation

9003 ACAGGCUGAUAACCCCCAAGAGCUCA

1 no match

9004 CGGUCCCCGGGACAUGGCGUGGUGGGUA

1 no match

9005 UCUCCCCGCGGAAAGACGGAAAGACCC

1 no match

9006 CGUGUGAACAGUGGUUGAUCACGA

1

0 ncRNA

rRNA

9007 GUUUCGUGUGAACAGUGGUUGAUC

1

0 ncRNA

rRNA

9008 ACCCGAAACCCGGCGAUCUAGGCAU

1 no match

9009 AUGUAGCCUUCAUUCAUGUUGGCAGUA

10 ncRNA

rRNA

9010 UCGGCUCGUGCGUCGAUGAAGAACG

1

2 ncRNArRNA

9011 UGUUUCAUCGUUAGACGGUCUCGGGC

1 no match

9012 AACUCAAAGACAGCUAUGUACCCGA

1

0 transposon

LINE

G2

9013 GUGGAAGUCAAAAGAGUUGAGAUCGC

1

2 transposon

LTR

Quasimodo

9014 GGCCCCGAUACCAACGACAGACCCAUA

1

0 transposon

LTR

accord9015 UGUUUCAUCGUUAGACGGCCCGGGCG

1

1 AT-chX

9016 ACAUUCAUAACCGAGCGACUGUUCCAUC

1

0 transposon

9017 GCUCAGAGCGAACGCUGGCGGCAGGC

1 no match

9018 GCCCGAAUUGACAAAUCCCGGAACU

19019 AACCAGGUGGCGCUGAACCCGCAGA

1 no match

9020 AACCCGAAACCCGACGAAAUUGC
9021 CGAGCGAACAGUGGUAUGACGCUAC

0 coding gene

CG6315-RA¦fl(2)drRNA
CG40228-RB¦CG40228

tRNA
LTR

0 ncRNA
0 transposon

rooA
rRNA

LINE

Cr1a

0 transposon

LTR

invader1

0 transposon

LTR

gypsy4AT-chX-B
LTR

GATE

0 coding gene

CG8330-RA¦tomboy40

1

0 coding gene

CG42266-RA¦CG42266

1

0 ncRNA

rRNA

9022 UCCAGAAGGCAAAUGAGUGUAGAU

1

1 no annotation

9023 CCCCUGAACGCGCCCGAUCUCGUC

1 no match

9024 UAAACUACUACAACAACGCCGACUGG

19025 UAAUGCCGAGAACUGAUGACGAUCC

1 no match

9026 AACUCUAGAUAACAUGCAGAUCGUA

10 ncRNA

9027 AUCAAGGGCAACGAGUUCCUCUGC

1

0 Su(Ste)

9028 UGUCCCAAGAGAGAAAAGAGUUCAA

1

1 transposon9029 AACACGGGAAAACUUACCAGGUCCGAAA

1

1 ncRNArRNA

9030 ACAAGCUUAGUGACGACAGCAAGGAU

1

0 coding gene

CG33523-RA¦CG33523

9031 AAACUGAAUAAACGAAUGGAUGAC

1 no match

9032 AUAUCCGUGAACUACAUCCCAACGACCGA

19033 CAGCUAGACUAUGUAUCCCCGGGUUAA

1 no match

9034 GUGGAUCCGGGCGUGGAAUGCGAGUG

1 no match

9035 GUGCUCGUUCUGGGUAAAUAGAGUUU

10 ncRNA

9036 CGACUCAUUAUCCCGCUCAGCUGA

1

0 transposon

LINE

G2

9037 GGCGAAGGCGGCUCACUGGACUGGU

1 no match

9038 CAGAGGUAGACGACCGGGCGAUGG

1

0 transposon

LINER1-element9039 AAGAAAUACAGAGUCGUGAUUGG

1

1 transposon

LTR

HMS-Beagle2265

9040 GCUCACCAAGGCGACGAUCAGUAGCU

1 no match

9041 AGCAAGAAGGCGCCGGUGGAAACC

19042 GCGACCUCACGAUCAGGACGUGGCGACC

1 no match

9043 UCCUGAGAUACCCUGAUUACAAAAAAGC

1

0 transposon

LTR

blood

9044 AUCUCGAUCAUGUGACUCCGGGUAG

1

1 transposon

LINE

Doc2

0 transposon

LTR

Stalker2rRNA
Su(Ste)LTR

invader4

0 no annotationrRNA

0 coding gene

CG17764-RA¦CG17764

9045 CCAUUUUGGACGAACUGCACGAGC

19046 ACUCGCCGAAUCCCCGGGGCGAGGGA

1 no match

1 coding gene

CG9755-RA¦pum

9047 UCUGACGAGAACUCGAGCCGCGUAGC

19048 AGCGGCGAGCGAAGUGGGACCACGCCC

1 no match

9049 ACGGGAAACCUCACCCGGCCCGGACACG

1 no match

9050 UUGGGAACGCCGCGUGUUGUUGGCCU

1

1 ncRNA

9051 AAAAAGUGAAGAAGACGUCGACG

1

2 no annotation

9052 UAUUUAGAGGAAGUAAAAGUCGUAAC

1

0 ncRNA

9053 AAGCUACCAUCUGUGGGAUUAUGACUG

1 no match

9054 GGCUUUGAGAGGCGCCGUAGUUACACCC

1

2 no annotation

9055 CUAUCUAGGACAAUGAUGCGACCCGUC

1

0 transposon

LTR

ninja-Dsim-like9056 GGAGGAAAAGAAACCAACCGGGAUUGC

1 no match

9057 ACCCCACGGAACACCCGAGCAAUGCCAC

1

1 transposon

LINE

G2

9058 UGCGGGAUGAACCGAACGUAGAGUU

1 no match

9059 AGUGACGAAAAAUAACAAUACAGGAC

19060 CCCGGGCGUCGCAUCCCCCCCCGCUAGC

1 no match

9061 UACCAACCCAGAAUAUGACCCAGCAUU

19062 AUCUCGUCGAGAAUGAACUUCG

1 no match

9063 CACGAAACUGGAACGGGAUUAAGAU

1

0 no annotation

9064 AACUUAACUAUGUUUCCCCGGUAGCGC

19065 AAAGUGGUACGCGAGCUGGGUU

1 no match

9066 GAUGUCUAUGAGAUGACCGUAAU

19067 CAAGAUAUGACCAAAGCAAGACAC

1 no match

9068 UGAGAUAUGCUAGCAGGCUGGAGA
9069 GACAUAAACAUCCGCAGCCGCAUUC
9070 AAACGAGUGUUAUUGUGGCCGGUA

1 no match

9071 GCCUGCUCCAAGUGUUUCUCGCGCC

10 coding gene

CG4452-RA¦CG4452

9072 CGGCCAAGCGUUCAUAGCGACGUCGC

10 ncRNArRNA

9073 AAACGACAAUGGAUGUGAUGCC

10 ncRNA

9074 CGGACCUAAAGACGGUUCCAAGCCCA

1

1 transposon

9075 GCCCCGGGUAGCUCAGUCGGUAGAGCAUUG

12 ncRNA

9076 AGUGGAGCCGUACCUGUUGGUUUGUC

10 ncRNA

9077 CACAGAGUACGGGGCUUACUAAAA

1

1 transposon

LINEbaggins

9078 CUCGCAAGAAAACUAAUCCGAGUA

1

0 transposon

LINE

Doc

9079 UUUGAUAAUAACCCCAGGAAUUAAAA

1

0 transposon

LTR

opus

9080 AUGCUCUCGAAUGUAUGCCCCGAUAU

1 no match

9081 GCAACUAGACGACGCUGCUAUACC

1 no match

9082 GGUCUACGAGCGGGCUUGGACGCGU

1 no match

9083 AAAGCCGAAAUCAUUGCCAAGGUCGC

1

2 coding gene9084 GACAGUCCAAACUCGAACCCCGUAAC

1

0 transposon

9085 AAACCAAAAGCUUUUGGGCUCCGGGGGA

1 no match

9086 AGCGCGAGAAGGAGCUGGGCGAGAA

1

0 coding gene9087 AACAGAGAGAAGACUCACCCGACGAGA

1

0 no annotation

9088 UCCUUAGUUCAGUCCUGAGUGCGAGCUCC

1 no match

9089 UUCAAGGUUACCCCAGGAUGCUGUGU

1

1 repeattrf

9090 GCCCAGCUUCCCGGACAUCUUCUUUC

1

1 Su(Ste)

Su(Ste)9091 ACCCUUUCAUGCUUGGGAUUGUG

12 ncRNA

9092 GCGACGAAAACGAUCUUUGCGAC

1

0 transposon

LTR

diver29093 UGCGAUGAACCUGUCACCUAGUGUG

1

0 transposon

LINE

Doc

9094 GAGCAGAGAACCCUCUAAUUCGGCC

1

0 transposon

LINEbaggins9095 UUGGUGGUGCAUGGCCGCUCCUAGUU

1 no match

9096 CAAGCUAGACUAUGUAUCCCCGA

1

1 transposon

LINE

Doc

9097 GGAUCGAGGCGACGCCGUACCGUUAUG

1

0 coding gene9098 ACUCGCCGAAUCCCGGGCCGAGGGAGU

1 no match

9099 CCCGUUAUAUCUAUGUGGAUGGUGUGC

10 transposon

LTR

9100 CGGGAAAUGAAAAAAUAUUGGCGA

1

0 transposon

DNA

9101 UGCUCUCGAAUGUAUGCCCGAUACUAC

1 no match

9102 ACGAGUAAUAUGAGCGCCCGGAGU

1

1 transposon

LTR

9103 UGGGCUCCGGGGGAAGUAUGGUCGCUA

12 ncRNA

9104 ACGUAAACAAUAAGUGACCACCAUGC

1

0 transposon

9105 GGAUCCUCAACUGUGGGCUCAA

1 no match

9106 CCGCCCUAGUUCUAACCAUAAACG

1

0 ncRNA

rRNA

9107 AUGGAUGACUCGAUGACUCCGAUCUGCA

10 coding gene

CG7045-RA¦CG7045

9108 GCGAUGCGGUGGUGCAGUCCGACAUGA

1 no match

9109 AAGACCGUAAACGAAAAGCUAAGAA

1

0 transposon

LTR

Idefix9110 AAAACCUGAAGAUGAUCCUGAGGC

1

1 transposon

LINE

Helena9111 ACCCGGAGAAGAAGCCCCGGCUAACUUCGU

1 no match

9112 AUGCCAAUCACGCCGUUUGAACCCU

1

0 transposon

Simple̲repeatI9113 GUUCGAUCCCGUCAACCUCCACCA

1 no match

9114 CAAACGUAAUGUUACGGUGCCCAAAUUA

1

0 ncRNArRNA

9115 CGCAUUGAUUACGUCCCUGCCCUUUG

10 ncRNArRNA

9116 CAGACCAUAUCUUUAGCUGUGCGCU

1 no match

9117 GUCACCUACAGGCCCCGAUGCGAGCAC

1

1 transposon

LINE

BS3

9118 AGAGAACAUACGAAACACCACCCA

1

0 transposon

LTR

flea

9119 GAGCAACUGUGAGGGGGAUCCUCAA

1 no match

9120 ACAUACUUAGGUAUUCAUCUGGACA

1

0 transposon

LINE

Doc3

9121 GAAGCCGUCGAGAGAUAUCGGA

1

0 ncRNA

rRNA

9122 CGUGGGUGGUGGUGCAUGGCCGUUC

12 ncRNA

rRNA

9123 UCUCAUCGUCGUAGAACAAGCCCGAUC

1

2 Su(Ste)9124 AACAACGUUCGCGUGAUGACCCCGGA

1

0 transposon

LINE

G6

9125 UGAGUUGAAAAAUUCCGAGAAUUGG

1

0 transposon

LINE

Doc2

9126 ACUAAUACGAUUGCGAGUUAAGCACC

1

0 transposon

LINE

Doc3

9127 GGCACAAUUACCAGAAGAUGUUGUCU

1

2 transposon

LTR

roo

0 no annotation

5SrRNArRNA

0 ncRNA
0 transposon

rRNA
LTR

McClintock

1 transposon

LINE

Doc3

0 transposon

LTR

ninja-Dsim-like

1

1 transposon

LINE

G2

1

0 transposon

LTR

Quasimodo

rRNA
LINE

G6
tRNA
rRNA

CG2113-RA¦CG2113
LTR

GATE
CG5119-RA¦pAbp

rRNA

CG31178-RA¦CG31178
micropia
1360
opus
rRNA
LTR

17.6

Su(Ste)9128 UCCUGAGUUUCUUCAACCUGUUGCAGGCU

10 transposon

Simple̲repeat

I9129 UGAUCAGUACCCAUGAGUGAUCCACU

1

0 transposon

LTR

Quasimodo

9130 GGCUGACAUGAAGAUCACCUCUGCA

1

1 coding gene9131 AGGACGUUCACACGAGGGUUAC

1

0 transposon

9132 ACCCUGAACGCGCCCGAUCUAGUC

1 no match

9133 AUGAUUCCCGGCUGGUUGGCCCUCGU

10 coding gene9134 CGACAGAGACGGCGCAUUUUCCA

1

1 transposon

9135 UUGUACACACCGCCCGUCGCUACUACCG

10 ncRNA

9136 ACCCUUGAUAAACGGUUGACUUUCAG

1

0 transposon

LINE

BS

9137 CACGAUGAUCGAUGACGAACUACG

1

0 transposon

LTR

ninja-Dsim-like9138 CUGAAGUGGAGAAGGGUUUCGUGUGAA

1

0 ncRNA

9139 CACACAGUCAGGGGUUCCAUCGG

1

0 transposon

LINE

Cr1a

9140 AUGCUGACUAAGAGGGCUGCACAGU

1

0 transposon

LTR

HMS-Beagle

9141 UUCAAUCCCCGGCAUCUCCACCA

1 no match

9142 UCUGGUUAAUUCCGAUAACGAACGAGA

1

0 ncRNArRNA

9143 CUGGACGGUCAGCAACAUCACAGC

10 coding gene

CG4799-RA¦Pen

9144 AGAAAGCACCGUUUCCGUCCGAUC

1 no match

9145 AAGCUUCAUCCAAGAGAACUGUGCCCGA

1

1 transposon

LINER1-element

9146 CAUCGCUGGAGGACGCCCGGGCUG

10 transposon

LINER1-element9147 CUGAAGUGGAGAAGGGUUUCGUGUGA

10 ncRNA

9148 AAGGUGGAAAUAAAGAAAAGGAUCCUCUAA

1 no match

9149 AUCUCGAGGAAUACGGCCUUACCGCAG

1

0 transposon

LTR

ninja-Dsim-like

9150 UGACGAUGGGGUGAGGCUUAAGCAA

1

0 transposon

LTR

Idefix9151 UAUAGGGUCUGACGCCUGCCCGGUG

1 no match

9152 CCCAGCUCGGGGAGGUAGUGACGUAA

1

1 ncRNA

9153 UUCGCUAUCAUACCCGAACACCAGUUA

1

1 transposon

9154 GGCUUUGAGAGGCGCCGUAGUUACC

1

0 no annotation

9155 ACCGGGACCAGGCCAGUGCUCUUGUGUA

1 no match

9156 UACAUCGAGAAUCUCACGCCCACAGGCA

19157 UAUCAAGAAAUCCUUUAUCACCCGAAC

19158 CUGUCUCAGUCGCUUCCCGGGAAA

1

1 ncRNA

rRNA

9159 CUGUAACUCGGGUCAACUGUAACUCGG

1 no match

9160 GGCUCAACUGUGAGGGGAUCCUCUAA

1 no match

9161 AACGCGACCGAUCCCGGAGAAGC

1 no match

9162 UCCGAGGAACCAAUUGAUCCAGCUG

1

0 Su(Ste)

Su(Ste)9163 ACUACGCCGAAUCCCGGGGCCGAGGGAG

1 no match

9164 CGGAGCGAUGUUCGGGCCCAGCUU

10 repeattrf

9165 ACAUAGGGACGGUCGGGGGCAUC

1 no match

9166 ACGAGUAAUAUGAGCGCCCAGAC

1

1 transposon

9167 AGGUUCGAAGGCGAUCAGAUACCG

10 ncRNA

9168 UAAUGCCCCGAAGGUUGCCCCUCUG

1 no match

9169 UGUCUCAUCGUUAGACGGCUCGGGCG

1

1 AT-chX

9170 CACAGAGUACGGGGCUUACUAAAGUCUA

1

1 transposon

9171 CUGUGAGCGGAUCCUCAA

1

2 coding gene9172 AUACAUGCCGACGGGCGCUGACCC

1 no match

9173 UUACUGAUAACGAUAUCUGCUGUGG

19174 AACUGAAUGUGGAGACGUCGGC

1 no match

9175 GCUCUCGAGAGACUACGUUCGGACAGUA

1 no match

9176 CAAGAUAUGACCAAAGCAAAGCAACG

19177 CGACGUGGCGACCCGCUGAAUU

1 no match

9178 GGAUCCUCAACUGUGAGGGAUCCUCUAA

1 no match

9179 UCCGAAGACAAGUAUACCGUGGC

19180 CAUCAUAUUCAUCCUGUUGGUCU

1 no match

9181 GAAGAUAAAAACUGGAAAGCCCGGGCGC

19182 CUUGGUUAGGUCGAUUCUUUUGAAU

1 no match

9183 GAGAGGUGUAGAAUAAGUGGGAGGCC

1 no match

9184 CCCCGCGGAAAGACGAAAAGACCCCA

1 no match

9185 ACAUUCAUAACCGAGCGACUGUUCU
9186 UGUCCCUACCUACUAUCCAGCGAA

CG5016-RA¦Mst57Db
LTR

opus
CG33233-RC¦CG33233

LTR

McClintock
rRNA

rRNA

rRNA

rRNA
LINE

G4

0 transposon

LINE

Doc3

0 transposon

LTR

micropia

LTR

opus
rRNA
AT-chX-B

LINE

baggins
CG10431-RA¦CG10431

1 no annotation

0 Su(Ste)

Su(Ste)0 transposon

LTR

micropia

1 transposon

LTR

Dm88

1

1 transposon

LTR

GATE

1

2 ncRNArRNA

9187 CGAAGCCGAGCAGGAACCGCGGGA

1

0 coding gene

CG8531-RA¦CG8531

9188 UUCACAGUAAAAUUUUGUAGCCGA

1

0 no annotation

9189 CAUAUCCGAGGCCCUGUAAUUGGA

10 ncRNA

9190 UCCGUUCAAAAAUGUUCAUGCAGGAGA

1

0 transposon

LTR

Rt1c

9191 ACCGAAGAAAACGAAGCCUCCGCCAA

1

1 transposonLow̲complexity

F-element

9192 AGACUGGCGAUGCGGGAUGAACCUAAC

1 no match

9193 UCGGCCCGAACCCUUCAGGUGUGUUG

1

1 transposon

LINEbaggins

9194 UGCGCUCGAAUGUAUGCCCGAUAU

1

1 transposon

LINER1-element

9195 UGCCCUGAAUGUAUGCCCGAUA

1 no match

9196 GGAUCCUCACUGUGAGGGGAUCCUCAA

1 no match

9197 UUUGCCAAUCUCGAGCCGGCCAAGA

1

0 transposon

LINE

G6

9198 ACCACCCUGAACGCGCCCUAUCUCGUC

1 no match

9199 UGAGCUAAUAGAGAACAGGAAGGAUC

1

0 transposon

LTR

rooA

9200 AACAUCGUCCCGGAUAACCAUGGUGCAU

1

0 coding gene

9201 GUCCUGAGUAUUCUCCUGUUGUCC

1

0 transposon

9202 UUCCGAGGAACCAAUUGAUCCAGCU

1

0 Su(Ste)9203 CGGCCCGAACCCUUCUGGUGUGU

10 transposon

9204 ACCGAUGGGCCUGGAGUACAUCAUC

1

2 coding gene

9205 GAUUCCGGAGAGGGAGCCUGAAA

1

1 ncRNA

9206 UAGAGAAAAACAUGGAACCAUCG

1

0 transposon

9207 GUCCCUGUGGAGGUUGCUGUAGUCC

10 coding gene

CG31740-RA¦CG31740

9208 CCAGGCCCGUAUAACGUUAAUGAUU

10 ncRNA

rRNA

9209 AACAGGCUGAUAACCCCAAGAGCUCA

1 no match

9210 UCCCCCUGAGAGAGGGGCCCGCGCCCU

1 no match

rRNA

CG31988-RA¦CG31988
LTR

Dm88
Su(Ste)LINEbaggins
CG40820-RA¦CG40820
rRNA

LINE

Doc

9211 CAACCUGAGAGUUUGAUCCUGGCUUC

1 no match

9212 UGCAGCCAAUAAGGACUUACGUUGUG

19213 AACUUGAGACCCAACAACGCAACCGAA

1 no match

9214 UAAAGGAUUACGUGUCUAAAGGAUA
9215 UAUGAAUCGAGUUAAAACUGCAGG

0 transposon

LTR

flea

1

0 transposon

LTR

ninja-Dsim-like

1

1 transposon

LTR

diver29216 GAACUUGAGACCGCCCCUGGACGAC

1

0 Su(Ste)9217 GCAUUCGAGACCCAACGGCACGUGAAAA

1

2 transposon

9218 UUAAUGCCGGAAGCGAUCCCACU

1

0 AT-chX

9219 UCUUAAACGAGUGUUAUUGUGGGCCGGU

10 ncRNA

9220 UGAGAACGAUGACGAUCCCACGG

1

0 transposon

LTR

ninja-Dsim-like

9221 AAGGAUUGGAUGGUCAUUAGAUGG

1

2 transposon

LTR

frogger

9222 CUGCCACACGUAACCCCGUUUUUGU

1 no match

9223 UCCGAACGUACCACGGUGCCCCAGU

1

0 transposonLow̲complexity

F-element

9224 UGUUUCAUCGUUAGACGCCUCGGGC

1

1 AT-chX

AT-chX-B

9225 GGCACAUCUCGACACCCGUGGCACU

1

0 coding gene

CG13340-RA¦CG13340

9226 ACCACCCUGAACGCGCGCUAC

1 no match

9227 UCAGCUCAUCUGCGCCGGGAGAUCGA

1

0 transposon

9228 CAAGGGAACGUGGGCUGGGAUUAG

1

2 ncRNA

9229 CCCGAAUUAAUCGCGAGGCUGCAAGA

1

1 transposon

LTR

mdg3

9230 ACCACCCUGACGCGCCCGAUCUCG

1 no match

9231 CACCAGGGGUUGCGGUUGGUCGACC

1

0 transposon

LTR

opus

9232 ACAUUCGAGAAGCGUUUGAUCGAGU

1

0 transposon

LINE

X

9233 ACCAGAGAUCUAGAGGGCCCGA

1

1 no annotation

9234 CGAGACUUUGAACUAAAAACAGUUACC

1

0 transposon

LTR

Rt1c

9235 AACUCGUAAUCGAUGGCCAUGCGUUCC

1

0 coding gene9236 CACGAAACUGGAACGGGAUUAAGAUC

10 no annotation

9237 ACACGACAACAUUCCGGGAAAUGAGC

1

1 transposon

LINEbaggins

9238 GCUAACACAAAAGUCGACUUCUA

1

0 transposon

LINE

Doc2

9239 CGCCGCAGGGCAGUUGGGGUAAGGAC

1

0 coding gene

9240 ACGGGGAAACUCACCAGGUCCAGA

1 no match

9241 GCCCCAAUGAGAACGAUGACGAUCCC

19242 ACCCCUGAACGCGCCCCGAUCUCGUC

1 no match

9243 UUAUCGACUCGUGUACCUGGUUAA
9244 CAGUACAGUGGCCAGCACGAAAACCGA

Su(Ste)LINE

INE-1
AT-chX-BrRNA

LTR

gypsy12rRNA

CG8561-RA¦Als

CG32688-RA¦Hk

0 transposon

LTR

ninja-Dsim-like

1

0 transposon

LTR

micropia

1

0 transposon

LINE

BS3

9245 ACCGACGUUUUCAAAUUAUGUAGGCAA

1

0 transposon

LINE

RR497839246 UAAACCUGAAGAGAGCCCUGAAUCG

1

0 transposon

LINE

Rt1b

9247 ACGAGUAAUAUGAGCUCCCAGAGU

1

1 transposon

LTR

opus

9248 GUCGUCCGAGGCGAAGACUGCGAGGGGU

1

0 no annotation

9249 AACCUCAUCAAGUUACCAUUCCG

1

0 transposon

LTR

Rt1c

9250 GCCGAACUUGAGACCGCCCCUGGACGACC

1

0 Su(Ste)

Su(Ste)9251 AUACCUUCGGGACCCGUCUUGAAACAC

1

0 ncRNA

rRNA

9252 UCGGGCGGCCCGGGUUCGUUUCCC

12 ncRNAtRNA

9253 ACAGUGCCAAGGCUAAAGAUGAUUCGU

1

1 coding gene

CG2658-RA¦CG2658

9254 GAGGAGGAGGACUAGCUGGCCGAGUA

10 Su(Ste)

Su(Ste)9255 GGCUUUGAGAGGCGCCGUAGUUACCUACCC

1

2 no annotation

9256 CCGAACUUGAGACCCCAACCGCUCC

1

1 no annotation

9257 ACGAGCAACGUCAACAGCCACCACAGC

10 coding gene

CG18811-RA¦CG18811

9258 UAUUACAGGAGAUAUUUGGACACGAU

1

0 Su(Ste)

Su(Ste)9259 UGAUAGUUCAAAGACCCCCAUAUG

1 no match

9260 CAACGAGCGCAACCCUCGCCAUUAGUUG

1 no match

9261 GUCGAGGGAUAUCGGAAGAGUUU

1

1 ncRNA

9262 CAACACCAAACAACAAAGAGAACAACGC

1

0 transposon

9263 GGUUAAUUCCGAUAACAAACGAGACUCU

12 ncRNA

9264 CUCCCACGGAACACCAGAGCAAUC

1

0 transposon

LINE9265 UUAUUAACGAAACCUGAGACCGACA

1

1 transposon

LTR

9266 CCCGAAAAAAUCCCCCCGGCUACGACC

1 no match

9267 AACCCUUGUCCUUAGUUACCAGCACGU

1 no match

9268 AGUAUACCUAUACAUUACCGCUAAA

1

1 ncRNA

9269 UGCACGAACAAAGCCAGUAAUCAU

1

0 transposon

LTR

flea

9270 AAAACCUGAAGAUGAUCCCUAGUCG

1

2 transposon

LINE

Helena9271 UCUAGAGACAAGGACGCAGCGCAAU

1

1 transposon

LINE

INE-1

9272 AAAAUUACAAAGACGACGGCCCAU

1

1 transposon

LTR

springer

9273 UCUCAUCGUCGUAGAACUAGCCCAA

1

1 Su(Ste)9274 CACACAACAAAACUAUAACCAGCUGC

1 no match

9275 CUGACAAGGAAUCAUUACUCAAUGA

1

0 transposon

LTR

springer

9276 UAGUACAAUAGAUCCGACUGGGCCAGU

1

0 transposon

LINEbaggins

9277 AGGAACGAAAGUGGACAGCGAGCGAAA

1

0 transposon

LTR

diver29278 AACGUAAAUAAAAAAGCUGGGUCG

1

1 transposonLow̲complexity

F-element

9279 UGCCCGACAAACUCAAGGAGGUGGCAG

10 coding gene

9280 UCUGGGAUGACUUGUGGAUAGGGGU

1 no match

9281 GGCGGUGCGCCGCGACCGGCUCCGGGAC

1 no match

9282 UCGAGAUGACAACCUUGGACCUGAAU

1

2 transposon

LTR

micropia9283 UUCCGAAUCAAAUGCUACGUAACC

1

0 transposon

LTR

diver29284 UACUGCGAUGGGGGGACGGAGA

1 no match

9285 CCUCAGCGAUGUGUGGGCCAUGUU

1

9286 CCGAGAUUCCCUUAGUAGUGGCGAGC

1 no match

9287 CAUUCAUAACCGAGCGACUGUUCA

1

0 transposon

LTR

GATE

9288 UGAGAUGUACAAUGCUGCUGAGU

10 transposon

LINE

G2

9289 UCGAGAAGAAGAUGAAGCGCAAC

1

0 transposon

LTR

ninja-Dsim-like

9290 UCGGGAUAAGGAUUGGCUCUGA

1

0 ncRNA

9291 AGAGCGUGUGGAGGACCGAACC

1 no match

9292 GAAUGAAACAAACAAUCUUCUGGGA

1

2 transposon

LTR

diver29293 CAAGCUAGCCUAUGUAUCCCCGGGUAA

1

1 transposon

LINE

Doc

rRNA
LINE

Cr1a
rRNA
G
297

rRNA

Su(Ste)CG5215-RA¦Zn72D

2 Su(Ste)

Su(Ste)rRNA

9294 GGCCAACUGUGAGGGGAUCCUCAA

1 no match

9295 CCAACACAUUUUGGAGACCCACU

1

0 transposon

9296 CCCGGGAUCAAUGCAGUGCUGCCUGACC

1

0 coding gene9297 CUGUUUUCGAGGGUACCUAUGUAGGU

1

0 transposon

LINE

Rt1a

9298 GCGAGUAAUAUGAGCGCCCAGAGUGAUC

1

2 transposon

LTR

opus

9299 GUGGGCGGCGGGACCGGGGGGGU

1 no match

9300 CAUGAAAUGAACCCGAAAGCACUGA

1

0 transposon

LINE

Doc3

9301 GGACAAAAACAACAUCCCGGGAAAUGA

1 no match

9302 UCAAGUAUAACGACCCAUUUCUGU

1

0 repeat9303 AUUGCCCUAGCUGUAACAACGUCUAC

1

0 coding gene

9304 CCAGACGUAAUACUCCACUACCCGAU

1

2 transposon

9305 AACAACCGAUAUGCUAUCUUGGCUGAU

1 no match

9306 UGUUUCAUCGUUAGACGUCUCGGGC

19307 CUCCCCCCGCCCCACCCCGCGCGCGCCGC

1 no match

9308 CCGAGUAUGAUUCUGACUUCGUAAA

1

0 transposon

9309 AGUAUCUAGGACUACCAUGGUUGCAAC

1

0 ncRNA

9310 CGGCCUGAUGACUGUUGAUGAUC

1

1 transposon

LINE

Circe

9311 AACGAGAAUAUACACAGGGGCUUAC

1

0 transposon

LINE

Doc3

9312 AAACUAAAUAAACGAAAUGGAUGACA

1

1 transposon

LTR

invader4

9313 UAGGCCAUGGAAGUUUGAGGCAAU

1 no match

9314 UACCCGCGAGAAUUGCCAGUUUCGA

1

0 no annotation

9315 GAGCGAAAACUUAAAUACCGAGAAA

1

0 transposon

LTR

Dm88

9316 AUAGAAGUAACCUUCGACUUGGACGCC

10 coding gene

CG31359-RA¦Hsp70Bb

9317 AGUCGAGAGUGGACGGGAGCGGCGGG

1 no match

9318 GCUUGAUAGUGCAGCACUAAGUGG

10 ncRNArRNA

9319 ACUUCGGGAUAAGGAUUGGCUCUGAAGU

1

1 ncRNA

9320 GUCCUGAGUAUUCUCCUGUUGUCCA

1

0 transposon

9321 UACUUCGCUACUACCCAUUUGGAA

1

1 no annotation

9322 AUAGAAGUUAAUUAUCUACCCACAGA

19323 AAGGAGAGCAAUUUUGGCCGUCACU

19324 UUUCUUUGAAGAUGGCCCACAUAA

1

0 repeattrf

9325 AGUUCAUUUCUGACAGGUGGCACC

1 no match

9326 CAGCAAGAGACUCGAGUAGGGCGGGA

1 no match

9327 UCUCAUCGUCGUAGAACUAGCCGA

1

2 Su(Ste)

Su(Ste)9328 UCGAAAAUAAGAAUCAAUGGCUGUGU

1

0 no annotation

9329 ACUACAUAUGGUUGAGGGUUGUA

10 ncRNA

9330 ACUCCCCGCGAACCCGCAAAACUGA

1

2 transposon

LINE

TART-A

9331 UGCUCUCGAAGGUAUGCCCGAUAU

1

1 transposon

LINER1-element9332 GUUCAUUUGAAACUAAAGCUAAGAUA

1

0 transposon

LINE

HMS-Beagle2

9333 AUGACAGUUCACGAUUGAUUCCC

1

0 transposon

LTR

opus

9334 CACGCAGUUACCGACCGUUGUGUCUGU

1

0 transposon

LINE

Rt1a

9335 AGUGUGUAAGACAGAUUGAUAGCUCU

10 ncRNArRNA

9336 AGCUCCACGGAGACGCUGAUGGACCUCGCU

1

0 coding gene

CG12679-RA¦CG12679

9337 GCCAACGACCAUACCACGCUGAAUAC

1

0 ncRNA

5SrRNA

9338 AUAGCGUACCGGAGUGGACUGCCGUU

10 ncRNA

7SLRNA-RA

9339 GGAUCCUCAACUGUGAGGGGGAUCUCAA

1 no match

9340 CUGGAUCGAUUGGUUCCUCGGGAU

1

0 repeattrf

9341 AGAGUUCCCGUGGUAGGCAGUAGU

1

0 ncRNA

9342 UGCCAAUGGAGAGCGACUGCAGC

1

0 transposon

9343 UUUUAUGAAAUUGAGGUUCUAGAA

1

0 no annotation

9344 UAGGAGUUCACCGCCACGACGCCCG

1

0 transposon

9345 CCGGAGCGAGGAGGAGGACUAGC

10 Su(Ste)

Su(Ste)9346 CACCAGGAGUGUAGCCUGCGGCUUAAU

1

1 ncRNArRNA

9347 GGAAAAAGGCGAUGCCCGUGAGGACC

1

0 no annotation

9348 UCAAGGAUAACAGGACCAUCCAAGA

1

1 no annotation

9349 UGUUUCAUCGAUAGACGGCUCGGG

1

1 AT-chX

9350 UCCUGGGAAACGGGGCGCGGCCG

1 no match

9351 CUGCGCUGCGGAUCGUAAUCUCAUCGC

1 no match

9352 CAAACAAGCAAAGUGAACACGUCGC

10 ncRNA

9353 UGGGCCCGAACCCUUCUGGUGUGUUG

10 transposon

LINEbaggins9354 CGUUCAAUAAUGACAGAGGUACA

1

0 transposon

LINE

Rt1a

9355 GACUCCAUGGCCAAGUUGGUUAAGGC

1 no match

9356 GAACGUGAAACUACAAACGGAUUGC

1

1 no annotation

9357 GAUUAACGAGAUUCCUACUGUCCCUAU

10 ncRNA

9358 GAACCCCAUUCGUAAGGCGCCCGAU

1 no match

9359 GUUACCUGGAACUAAGAUUGGCU

10 transposon

LINE

INE-1

9360 ACCCUUGAUAAACGGUUGACUUUUC

1

2 transposon

LINE

Rt1b

9361 GGCUUCAUCCAAGCGAACUGUGCCCGA

1

1 transposon

LINER1-element9362 GAACAUAUCAGGGGCCUUCGCAGA

1

1 transposon

LTR

HMS-Beagle

9363 UAAACCAAAGGCCGUGAGUUUCCCCU

1 no match

9364 GCACACAGAGGAGAGCAGAUGGAGAGCA

1 no match

9365 GGUCACCUGUGCCGCCGGUAUCCGUUCAA

1

1 coding gene

CG11579-RA¦arm

9366 ACAGCCAGGCCGAGGCUUUGAAAGAUC

10 coding gene

CG32437-RA¦CG32437

9367 GUUCGAUUCCGGAGAGGGAGCCUGAAA

1

1 ncRNArRNA

9368 GAGUACUUCAGCCAGACACUGGACG

1

0 Su(Ste)9369 UGAGCACAAAACGGUGGACUACCACA

1

0 transposon

LINE

Quasimodo

9370 GGAGAAAAUAAAAUCCGGGAAUGGAA

1

0 transposon

LTR

rooA

9371 UGGUGUCACCAGCCCAAUCCGCGUC

1

0 transposon

LTR

DM88

9372 AAGUAAACAAAGAGAGCGCGAC

1

0 transposon

LTR

9373 AACGUAAACAAAAAAGCUGGGUCGA

1

0 transposonLow̲complexity

F-element

9374 CUGGCAAAGAAAAAUUAAGAGUC

1

0 transposon

Unknown

RR50960

9375 GGCACAAUACUUGUUCGAGCGA

10 ncRNA

9376 ACCUCCAUGCCGAUCAUCCUGUUGA

1

0 transposon

LTR

Stalker4
CG3124-RA¦CG3124

trf
CG13591-RA¦Ssl
LTR

1 AT-chX

HMS-Beagle
AT-chX-B

LTR

springer
rRNA

rRNA
LTR

Dm88

1 transposon

LTR

DM88

0 transposon

DNA

1360

rRNA

7SLRNA-RA
LINE

R1-element

LTR

GATE

AT-chX-B

alphagamma-elementrRNA

Su(Ste)

297

rRNA
LTR

ninja-Dsim-like9377 UCGAGUAGAAUGGUGAACGAGCAAG

19378 GGCGGAGCUGAGAAGACGGUCGA

1 no match

0 transposonDNAtransib4

9379 GGUAGUAGAACACGUUUAUUCUGGA

1 no match

9380 UGUGUUCGAGUCCCACGCGUAGUGCCA

1 no match

9381 GAGAACGCACCCGCUUGACCUUACUCA
9382 UCCGAGGAACCAAUUGAUCCAGCUGCG

10 transposon

LINE

G2

1

1 Su(Ste)

9383 CCAAGAUCAUCAACCCGCGUUAU

1

0 transposon

LINE9384 CAAGAUAUGACCAAAGUAAAUACAC

1

0 transposon

DNA9385 AUGACCCACAUUGUGCGCGAGGC

10 coding gene

9386 UAAACCGUCAUCCAGCGCAAGUUGCC

1 no match

9387 UGCUCUCGAAUGUAUGUCCCGAUAU

1 no match

9388 ACCAGAGGCAGAACCGAAACCAGAAUGA

19389 GCCUGAGGUGUGGGUGGCCCGCAUUCGU

1 no match

9390 UCGAAACGAAAACAUACACAGAGACC

19391 AGGGACAGUCGGGGGCAUUAGUACU

1 no match

9392 ACGCGCGGCAGGACGAAAAGACCCC

1 no match

9393 UUCCUAGCCAUUAUACGGAUAUA

1

0 repeat9394 ACCGAAUUAUUCGCGAGGCUGCAAGA

1

1 transposon

LTR

mdg3

9395 GGCCAUACCACCCUGAACGCGCCCGUA

1 no match

9396 AGGGGUCUGGAGGCGAACCUGGGGAA

1 no match

9397 AGAAGCUAUAUUCAAGAAGAUGUAA

1

1 transposon

LTR

flea

9398 AUACCACACCAUCCCCGAACCGCAA

1

0 coding gene

9399 GCCGAAGAUGUCCGGGGCUCAAGUUCA

1 no match

9400 GAAGAAGAGAUGCCCAGUGAGUUUA

1

1 transposon

LTR

ninja-Dsim-like

9401 UCGACGAGAACGAGAUCAGCGCGA

1

1 transposon

LTR

frogger

9402 AUACGAUGUCAUCCCUGCCAAACCCAUC

1 no match

9403 CAGGCGUUCGACAGAGUGUGGCAUC

1

0 transposon

LINE

G2

9404 ACUGCCGACCGAUCGCUUCGCUGG

1

0 coding gene

CG5525-RA¦CG5525

9405 AACGAGUGUUAUUGUGGGUCGGUA

1

1 ncRNArRNA

9406 ACGGGAAAACUUACCAGGUCCGAACAU

1

0 ncRNArRNA

9407 ACGAGCGCACGUGUUAGGACCCGAAG

1 no match

9408 AUUGACGGAAGGGCACCACCAGGAGU

10 ncRNA

rRNA

9409 GUCAGGAUGGCCGAGUGGUCUAAG

1

0 ncRNA

9410 GACCAUAUACGAAGACGCGGCGC

1

1 transposon

9411 AAAACCUGAAGAUGAUCCUGUAGUCGC

1 no match

9412 UGACCGGGAGGAGGUGGUACUGUGGA

1

0 coding gene

9413 GCCCAAAGGAUACUCGAAGACACC

1

0 transposon

9414 GUUCCUAAUCCCGUGAUUGUUGUUGUCC

1 no match

9415 UGAGGACUUGGGCGAUUUAAGUGG

1

0 Su(Ste)

9416 ACAUUCAUAACCGAGCGACUAUUC

1

1 transposon

LTR

GATE

9417 ACUCAUAAGAGACUGCCGGGGUCAACU

1 no match

9418 CUCCCACGGAACACCAGAGCAAU

1

0 transposon

LINE

G6

9419 GACCGAACAAACGAAAUGGAUGAGA

1 no match

9420 CAGGUACGGACCAAUGGCACAAUA

19421 GGCGAAGGCGACAUACUGGCUCAUUUA

1 no match

9422 GCCUGAACGCCUCUAAGGUCGUAUCCGU
9423 UUUCCGCAUGUGAAUGUUGGCCCCAGA
9424 ACGCCUCCUCCCCUCCUCCCGCCU

1 no match

9425 ACGAUUGGGACGACAUAAAACGAGU

19426 AACCCUGAACGCUCCCGAUCUCGUC

1 no match

9427 UACAUCGAAAAGCGAGUUGACGUGUGC
9428 UCAGUGCCUGACCAGGUGUUCCAGAU
9429 UGCUCUCGAAUGUAUGCCCGAUUAU

1 no match

9430 AAGUAAACAAAGAGAGCGCGACA

1

0 transposon

LTR

9431 CCUCCCGUUACCUCACAGCAGCCACC

1

0 transposon

LINE9432 GCAACGGGUAACGGGGAAUCAGGG

10 ncRNArRNA

9433 GCUGCUCGAGCCGGAGGCACAUGCUCGC

1

1 coding gene

CG14305-RA¦CG14305

9434 AACCGGGACCGGGAUGAUUCGCGUAGGA

1

0 coding gene9435 CGACUCGUUUUUAAAUUUCGCAACAU

1

1 transposon

9436 CACGGAACGGCGAAGGCAUGGCUGC

10 ncRNA

9437 UCAACCGCUACGUGAACGAGACCUGUG

10 coding gene

9438 UGGGAUGGACUGAGACGUGCCCU

1

0 transposon

LTR

GATE

9439 UCAAACUUGACUGAAGGGAUCUU

1

0 transposon

LTR

invader4

9440 AGGAAUUGACGGAAGGGCACCAC

10 ncRNArRNA

9441 UGCCUUAUGGGCAACAUAACCGACGA

1

0 coding gene

CG5045-RA¦CG5045

9442 UGUUUCGCAAAAGUUGACCGAACUUGA

1

0 ncRNA

9443 ACCGGAUUAAUCGCGAGGCUGCAAGA

1

1 transposon

LTR

mdg3

9444 ACUCGCCGAAUCCCGGGGCCGAGUGAGC

1 no match

9445 AUCUAGGCUGAGCGGAGAACCAGAGUU

1

0 transposonLow̲complexity

F-element

9446 AGUAUAUGAGCGCCCAGAGUGAUA

1 no match

9447 AAGGGAAAACUUACCAGGUCCGA

1

1 ncRNA

9448 ACAUAUCAAACGCAUACUUAAACGGCA

1

1 transposon

9449 AGAGAGUGAUGCCGAGUAUAAAAGUAA

10 repeat9450 UCCCGCAAUAUGGCAACCGCUCGA

1

1 coding gene9451 GGAUCUCAA

1

0 transposon

9452 GGGUUCCGGGGGGAGUAUGGUUG

12 ncRNA

9453 UAGGAAUGCACCCGCUACUUUUCG

1

1 transposon

9454 CCAUCCGCUGCGUUCGGGAGCCGGGAA

1

1 coding gene

9455 UCGAGUGAGACCGGGGGGGCAUUC

1 no match

9456 UCCAAGCGAACUGUGCCCGAGGCCGUA

1

2 transposon

9457 CCAGAGCGAGGAGGAGGACUAGCUGGC

1

1 Su(Ste)

9458 ACCAACGGGAUACCUCAUACUCGAGUU

1

1 transposon

LTR

micropia9459 AGUUGAAAAAUUCCGAGAAUUGG

1

0 transposon

LINE

Doc2

Su(Ste)Cr1a1360
CG4863-RA¦RpL3

0 no annotation
0 transposon

LINE

Doc

LSU-rRNA̲Dme

CG7450-RA¦CrebA

tRNA
LINE

Rt1b
CG10590-RA¦CG10590

LTR

ninja-Dsim-like
Su(Ste)0 repeat

LSU-rRNA̲Dme

1

0 ncRNArRNA

1

0 no annotation
0 transposon

LTR

opus

1

0 transposon

LTR

Max

1

0 coding gene

CG9611-RA¦CG9611
297
G2

CG3845-RA¦NAT1
LINE

Cr1a
alphagamma-element
CG1882-RA¦CG1882

rRNA

rRNA
LTR

frogger
trf
CG40609-RA¦CG40609

LTR

diver2
rRNA

LTR

297
CG9393-RA¦CG9393

LINE

R1-element
Su(Ste)9460 AGACCCGUCGCCGCGCUCUCCCC

1 no match

9461 UCGAUAUUAUCCCAGCACUACGAAGC

1

0 no annotation

9462 GAGAAUCCGAGCACUUUGUUACA

1

0 transposon

9463 UGUUUCAUCGUUAGACUACUCGGGC

1

2 AT-chX

9464 UGUGAGGUUUUGAUCCUUCGAUG

1 no match

9465 GCACACAGAGGAGAAGAUGAGAGCA

1 no match

9466 AGGAUGAUGAUACCGACUAAAGGCAG

1

1 no annotation

9467 UACAUCGAGAAUCUCACUCCCACAGGC

1

1 transposon

LTR

Dm88

9468 AACUUCUUAGAGGGACAGGUGGCGUU

1 no match

9469 ACGCGCACCAAUGCUUUUUCGAGAUAGA

1 no match

9470 AGCUUCAUCCAAGAGAACUGUGCCCGUA

1

2 transposon

LINER1-element

9471 CGAGACACAACAGAUCUCACAGGUCGGC

1 no match

9472 CGUACAGAAAGCCAAUUGGCAAGGAA

1

0 transposon

LINE

G2

9473 UCGACUCGGCUAUUGAUACUAUGA

1

0 transposon

LINE

INE-1

9474 CGCCAGCACCAACCCGAAUCCGGCCG

10 coding gene

9475 ACCACCCUGAAUGCGCCCGAUCUCG

1 no match

9476 CCAUCAGAGACUGCGGUGGCCAA

1

0 coding gene

9477 GAGGCGCCCGGGGUUAUAAUCGUG

1

0 transposon

9478 GAAACCAAAGCUUUUGGGCUCCGGGGGA

10 ncRNA

9479 CCGAUACAAAAGUGUGCUAUACC

1

0 no annotation

9480 ACAAGAAACAGAAGAAGUGCCAUU

1

0 coding gene

9481 AACCCUUUCAUGCUUGGGAUUGUGAA

1

2 ncRNA

9482 ACGAAGCAUACGAAGAAGCAUACGA

1

0 transposon

9483 CCGCAGGUACGCCGUCGCUUCCCGGGA

1 no match

9484 GGAUCAACUGUGAGGUCAA

1

2 no annotation

9485 GUAACUUCGGGGUAAGGAUUGGCUCU

1

1 ncRNA

9486 CCUGAUUGAUAGCGUAGACGACGAC

1

0 transposon

9487 GCCCGGGUAGACUCAGUCGGUAGAGCUAUUG

1 no match

9488 AGUGACGAAAAAUAACAAUACAGGACU

10 ncRNArRNA

9489 UGACGACGAGACAUCCUCCCAGGACAAC

1

0 coding gene

CG5217-RA¦CG5217

9490 UUAUAAGGAUGAUGAUACCGA

1

0 no annotation

9491 CCGGGGGGAAGGUGGCUCGGGGGG

1 no match

9492 CCUAUCUGGAUAGUCCCGAAGAAACC

1

0 transposon

LTR

opus

9493 CAACCGAGGCAACAAUAAUAGUAAUAA

1

0 transposon

LTR

Stalker2

9494 UAUGGCUCUCUCAGUCGCUUCCCGGGG

11 ncRNA

9495 GGAGAGGUGGCAGAGUGGUCGAAUGUU

1 no match

9496 AAAAUAACUCCAGCAGAGACCGUACCC

1 no match

9497 AGGGGAAUGAUGAUAAGGUCCGA

1

0 transposon

9498 CUGGCGGGAGCUGGUGCGCGAGAAG

1

0 coding gene

9499 UCCCCGCGGAAAGACGGAAAGACCCC

1 no match

9500 GCUACGGUCAAUGUCCCUGAGGU

1

1 transposon

LINE

F

9501 GAGGGAAGUAUGAGUUCCGAAGGC

1

0 transposon

LTR

blood

9502 CCAGCCGUGCCCGAUGUGCCUUGAGCA

1 no match

9503 AAUCAAAUGACAGAAGAGCCGUGGACAC

1

0 repeattrf

9504 GAGUACUUCAGCCAGACACUGGACAC

1

2 Su(Ste)

Su(Ste)9505 UGGGCCCCGAACCCUUCUGGUGUGUUAA

1 no match

9506 GUAAUUGGAAUGAGUACACUUU

10 ncRNA

9507 GUUACCCAAAAGCUAAGGAGGAG

1

0 transposon

LINE

Rt1b

9508 CACGAUAAGACCGGACGCAGCCGCAG

1

0 transposon

LTR

gypsy49509 CAAGCCAAUCUGGACGUACGGAAUUC

1

0 transposon

LINE

G2

9510 CAACCAGAGAUCUAGAGGGCCCAAGUA

1

1 no annotation

9511 CAAUCUAGACUAUGUAUCCCCGGG

1

1 transposon

LINE

Doc

9512 GGCCUCCAAGUCCUACAUCGCUGC

1

0 transposon

LTR

diver29513 CACCGAUGGCGAAGGCAGCCCCCUGGGC

1 no match

9514 CCCGCUAGGAGAUGUUGAGAUUGUGA

1

0 transposon

LTR

roo

9515 CCCACAGAGUACGGGGGCUUACUGAA

1 no match

9516 UCCGAGCCAGAGGACUGUGAGGCA

1

0 transposon

LTR

roo

9517 ACUGAUUAGGUAACUGGAUAUGCUC

10 coding gene9518 AAACCCGAGAGGUACAUUUUUGCAGCU

1 no match

9519 GAGAGUGAUCCGUGACUUUGUUGUGC

1

1 transposon

9520 ACCGUGGAGGACAUGGACGGUGG

10 coding gene9521 UAAUUGAAAAAGAACACCGUAGAG

1

0 transposon

LTR

opus

9522 GAGGAAUUUGAGCUGCGUUGACGCC

1

0 transposon

LTR

ninja-Dsim-like9523 UCUUAAACGAGUGUUAUUGUGGGCCGG

10 ncRNA

9524 AACUACGAAACUCAAACUCCCGGACA

1

0 no annotation

9525 CGGACUCUAAGACGGUGCUGCUUG

1 no match

9526 AAAACCUAGAUGAUCCUGAGUCGC

1 no match

9527 GGAAAACCUGAAGAUGAUCCUGAGU

10 transposon

LINE

Helena9528 UCGAUACCGAGGCUUGAACGUCA

1

0 transposon

LTR

Idefix9529 ACCGGGACGUUCGCCAAUUUCUGUGGC

10 coding gene

CG5193-RA¦TfIIB

9530 CAACAACAGACAGAACGGAGCAGC

1

1 coding gene

CG7115-RA¦CG7115

9531 ACCCAGGUGAUUACCACUAUUAAUGAAA

1

1 Su(Ste)

Su(Ste)9532 CAAGAUAUGACCAAACAAAGACACU

1 no match

9533 AUCGCCUCGAGGAGCUCACUUUCC

1

0 no annotation

9534 UGAAGACAAUUCUUGUUGCUCGGGC

1

1 transposon

LINE

INE-1

9535 CAAAACGUAACGGCAGAGGUAAA

1

0 transposon

LTR

HMS-Beagle

9536 CCCGACCUUACAAAACCAUUCACGU

1

1 transposon

LTR

accord9537 GCAGAUGUAAUUCCAAGGCGACCCAUG

1

0 no annotation

9538 GGAUCAACUGUGAGGGGAUCCUCUAA

1 no match

9539 UCGGAACUUUUGUAACUUUUUCGAAAA

1

0 transposon

DNA

FB

9540 GGAUCAACUGUGAGGAGAUCCUCAA

1 no match

9541 CCGAACAUCGAAGAUUGGCCUACCCUU

1

0 transposon

LTR

9542 GGGGAACGAUCUCAAGUGACUGAC

1

0 transposon

LINE

LTR

HMS-Beagle
AT-chX-B

CG6148-RB¦Past1
CG12717-RA¦CG12717
LTR

gypsy8rRNA
CG40609-RA¦CG40609
rRNA

LTR

invader3

rRNA
LINE

Rt1a

rRNA

LTR

roo
CG13891-RA¦CG13891

rRNA

CG15498-RA¦CG15498
LINE

INE-1
CG5214-RA¦CG5214

rRNA

297
Cr1a

9543 GUGGCUUUGAGAGCCGCCGUAGUUA

19544 GGAACACGAAACGAAGCCCCCUGUC

1 no match

1 no annotation

9545 GUUGCAUUAAACAGAUUCCGCAGUGC

1 no match

9546 UACUUGUUCCCCGGAUAUUUUAGUUAC

1

0 repeat9547 ACAUCAAUCGCUGAUGAGACACCGU

1

1 transposon

LTR

accord9548 UGAGGUGUUUCAUCGUUAGACGGCUCGG

1 no match

9549 UGACGAAAGAGUUUGCUAAGCCACA

1

0 transposon

LINER1-element

9550 AGUGAAACGACAGUGUCCCGCGGA

1

1 transposon

LTR

springer

9551 CAACCAGAGAUCUAGAGGGCCCAGAAA

1

2 no annotation

9552 CCGAUCGUGAGGUUAAGGUGCCG

1 no match

9553 AAGUGUGUAAGACAGAUUGAUAGCUCU

10 ncRNA

9554 UGGAACGAAAUUGGCCUGAUUAGU

1

0 transposon

LTR

GATE

9555 AUAGAAGUUAAUUAUGUACCCACA

1

0 transposon

LTR

DM88

9556 AGGUGUCCCAAGGCCAGCUCAGU

1

0 ncRNA

9557 GCUCGGGGAGGUAGUGACGAAAAAUAA

1

0 ncRNA

9558 AAGAUCAAAAGUUGGCGCCUGUAGGA

1

0 transposon9559 CCCCGCGGAAAGACGGAAAGACCCCA

1 no match

9560 GUGGCAUUGAGAGGCGCCGUAGUUACCAC

1

1 no annotation

9561 AUGCGUAGAAGUGUUUGGCGUAAGCCUGC

10 ncRNArRNA

9562 AGACCCGUGGACGGUGUCGAGGCCGGUGGC

1 no match

9563 CACCCUGAACGCGCCCCGAUCUCGU

1 no match

9564 CCAGGCCCAUCUGGUUGAACGUGU

1

0 Su(Ste)

Su(Ste)9565 AGGGCAAGGACAAGAAGAAGUAGACC

1

0 coding gene

CG12902-RA¦CG12902

9566 ACGAUUGCCAGCUCACAGAACAAGGUCU

1

2 no annotation

9567 AUUCCGUAAACGAAGCCCAAAGU

1

0 transposon

LTR

Rt1c

9568 AAGCCUGAGAGGUGAUGCGUAGCC

1 no match

9569 ACACUGAGAACUGGGACUGCCUGCUU

11 transposon

LTR

GATE

9570 UGCUCUCGAAUGCUUGCCCCGAUAUA

1 no match

9571 CCCUGCCCGUAUGAAUGUCUCGAUC

1

1 transposon

LINE

INE-1

9572 GUCCUGAGAGAUGGGCGAGCGCCGUU

1 no match

9573 AAAAUCUCGCGCCGGGCCGUACCCAUA

1 no match

9574 GGCCGCCGGUGAAAUACCACUACUC

1 no match

9575 AACACUAGAUGAAAAUGAUCGAGUCG

1

0 transposon

LTR

9576 UGCAACUUGAGCGACGCCGUCUCUGCC

1

0 transposon

LTR

9577 UGGAUUAUGCCUGAACGCCUCUAAC

1

1 ncRNA

9578 UACGACGAGAACGAGAUCGGCGCG

1

1 transposon

LTR

9579 ACGAUGAUUUAAUUCUAGCGUCCCAGU

1

2 transposon

LTR

9580 UUGGGCCCGAACCCUUCUGGUGUU

1

1 transposon

LINE9581 AAGGUCUGCUCCCGCAAUCCCAAGUGUCC

1

1 coding gene9582 CUGUUCACAUGAACUUGGAAUUCCCAG

1

0 ncRNA

9583 CAGUAUUGGUCCAAGAACGCUGCCU

10 transposon

LINE

G

9584 CCGACAAACAUCCAACGAACACAACA

1

1 transposon

LINE

Doc

9585 AGGGUUCAUCGUCACCAACAAUGGCGC

10 transposon

LTR

gypsy39586 AGAACUGGCGAUGCGGGAUGAACCUAAC

1 no match

9587 GGCCAUGUAACGAAACGGAAGUAC

1

1 transposon

LTR

flea

9588 ACUUGGAUGGGAGACCGCCUGGGAAU

1 no match

9589 GCAUUCGAGACCCAACGGUACGUG

1

1 transposon

LINE

INE-1

9590 UCUCAUCGUCGUAGAACAACCCGA

1 no match

9591 UUUAAUGCCUAACGAGGUAGAUGAC

1

0 transposon

LINE

Cr1a

9592 CCAUCCUAAAACUGAUAGACAGAUGGC

1

1 Su(Ste)9593 UUCGAUUUCAAGUACCAGGCGAAC

1

0 repeat9594 AAUUACAUUAGACGAGACGGCCCUAU

1

1 transposon

9595 UAGAUCUUCACCGUUGACUAGCCCCA

1

0 Su(Ste)9596 CCACGAGUCGUAUGCGUAAUAAGAGU

1

0 no annotation

9597 AGCGUCGAACGAUUUCUGCCCA

1

0 transposon

9598 UCAGUCUGAGAAGGGAGGAGUUACCGC

1

0 no annotation

9599 UAGUCCAAAGUUCAAUGCAGGCCU

19600 AAAAGUGCAUACAAUUCCCGCUUUA

19601 ACCCCAAUUGUGUUUCGUCCUAAAGA

LSU-rRNA̲Dme

rRNA

rRNA
rRNA
LTR

flea

297
diver2rRNA
frogger1731
baggins
CG9130-RA¦CG9130
rRNA

Su(Ste)
RSP
LTR

opus
Su(Ste)LTR

Quasimodo

0 transposon

LINE

Circe

0 transposon

LTR

opus

1

0 transposonLow̲complexity

F-element

9602 AGCUAAAUGAGCGAACUAUUC

1

0 transposon

LTR

gypsy

9603 GACUCUAGAUAACCUCGGGCCGAU

1 no match

9604 GGCAACUAUGCACCAGUGCCUCCUC

1

0 coding gene

CG4836-RA¦CG4836

9605 GAAAUCCGACGCAACAAUCCGGUUGUC

10 coding gene

CG33936-RA¦CG33936

9606 ACCAUGAAAGGCGUUGGUUGCUUAAA

1

0 ncRNA

9607 AUGUCCCAAGAGAAGUUGGCCCAU

1

0 transposon

LTR

flea

9608 ACCCUGGACAGAAGGCUGACUUG

1

0 transposon

LINE

G2

9609 AGCGAUGCGAAUGAUGACAGCGAG

1

0 coding gene9610 GAAGAAAUGAAUGCUUUCCUGAGCGA

1

0 transposon

LTR

Rt1c

9611 UGCGCGAAGAAGGAGAACGAGAAGGCA

1

0 transposon

LINE

G6

9612 UGCUAAGGGAUCCAGUUGCGAUAAACU

1

1 transposon

DNA9613 AAUUACUAAUUCGUUGUGGGCCAGAGU

1

0 no annotation

9614 UGCACCGAAAAUAUAUGCGAGGUAAA

1 no match

9615 UAGCUAAUUAACACAAUCCCGGGGGC

12 ncRNA

9616 GUCGUCGAGUCGGUUGCCACCAUCA

1

0 transposon

9617 UGGUUCCUUAGAUCGUUAACAGU

1

0 ncRNA

9618 AUUGAGCGAACCCGGGGAACUGAAACAU

1 no match

9619 UGCGCAGAGUCAUGCCAGUACUGGACGA

1

0 transposon

LINE

G2

9620 AGCUCGAUCAAAAGGCCCUGGCAA

1

0 transposon

LTR

Dm88

9621 GUCUCCGGACGUGAUCACUGUGUGAC

1 no match

9622 AGAGCAAUAUGACAGCGUGAUCCAA

1

1 transposon

LTR

Rt1c

9623 UACUCGAAGACACCACGGUGAAAGUG

1

0 transposon

LTR

ninja-Dsim-like9624 AGAUGGCAAACGUCGCGACGGGGAC

1

2 transposon

LINE

Rt1b

9625 UCCGAUUUCAAGUACCAGACACACA

1

0 repeatrRNA

CG14040-RA¦CG14040

1360

rRNA
LINE

Doc4
rRNA

RSP

9626 UCCUACUCGCUAGACGCACGGAACGGC

19627 CCGAACGUAACCCACGGUGCCCCAGUGAUG

1 no match

0 ncRNA

alphagamma-element9628 CGGCUUAUCACAUCCUGGGGCUGGA

1 no match

9629 UCCGAAGACAACGAGGAGCAGAUCUGA

1

1 transposon9630 AUACCAAGGCCAAGAAACAGAAGAAGU

1

0 coding gene

CG12717-RA¦CG12717

9631 UAUUCUAUCAAUCAAAACUGGCCAA

1

0 repeattrf

9632 GGGGUUCCGGGGGGGAGUAUGGUUGC

1 no match

9633 UCCUACGACACACUCGAGCCAGUCAAG

1

0 no annotation

9634 CUCGAAGAAGGGCAAGCGUUUGGGCGU

10 coding gene9635 UAGCUUGGUUCAACAGCGACUGACUGC

1

0 transposon9636 ACUUGAGACCCAACAACGCAACCGA

1 no match

9637 CGGGAAAACUUACCAGGUCCGAACA

19638 GAGCCUUCCUGUGGCAGGAGAGACA

1 no match

9639 AACUGAAUAAAGGAAAUGGACGAGA

1

1 transposon

9640 CUCUCUCAGUCGCUUCCCGGGGAAAC

1

2 ncRNA

9641 ACAGACUCGGAACGCCUCAUUGGUGA

1

0 coding gene9642 AGCUAAGAUAUACCGGACGUUGUGCAAC

1

1 transposon

LTR

gypsy129643 GUUCUUUAUAUCGAACGGACCAGCGUAA

1

1 transposon

LTR

GATE

9644 UGGUGGUGCAUGGCCGUUCUUAGUUCA

1

1 ncRNA

9645 ACAAAAUUAAGAGUGCCCAAGACGCGC

1

0 transposon

LTR

springer

9646 CACUAUUACACGAUAUACCUUGAGGAA

1

0 transposon

LINE

Cr1a

9647 UUGAUACGAAUGAGACCCACUGUAA

10 repeattrf

9648 GGUUUAGAUUCCGGAGAGGGAGCCUGU

1 no match

9649 GCACCGAAAAUAUAUGCGAGGAGA

1

0 repeattrf

9650 UGCUCUCGAAUGUAUGCCGAUAUA

1 no match

9651 AGACUGCCCAUACAGACGUUAUGCACA

1

0 coding gene9652 AUCUCCAAAGGCAUAGGGCAAGAC

1

0 transposon

LINE

G2

9653 ACCGUCCGUACCGAGUCAGUCGCAU

1

0 transposon

LTR

GATE

9654 CUGGUGCCGAGGCCUGGUUGGAUGAGU

10 coding gene

CG8827-RA¦Ance

9655 AAGGCUAAAUACCGGCACGAGACCGA

1 no match

9656 UCUCAUCGUCGUAGAACAAGCCCGAC

1

1 Su(Ste)

Su(Ste)9657 AGGUGAAAUUCUUGGACCGUCGUAAG

1

0 ncRNA

9658 AGUAAUAUGAGCGCCCAGAGUGAUA

1

0 transposon9659 GCCAACGACCAUACCACGCUGAAUACA

1

0 ncRNA

9660 AAAGCGAAUGAUUAGAGGUCUUGGGGCC

1 no match

9661 AACUUCGAUAGCGAACUGACUCUG

1

1 transposon

LINER1-element9662 AUCCGGACAAACACACAAGACCCG

1

0 transposon

LTR

opus

9663 AUCGUGGUAACGGAAGAGCAACAGCUG

10 ncRNA

9664 CAGACACGAACGACAUUUUGAUUAU

1

0 transposon

9665 CUGGAUCCGAAUAACUAUUAAGUUA

1

1 repeattrf

9666 CCGAAAACGGUACAAGUGGCUUUG

1

0 coding gene

CG6538-RA¦TfIIFbeta

9667 GAUCCUCAACUGUGAGGGGAUCCCAA

1 no match

9668 GUGGGACAAUGCCCGGAGCGCAAG

19669 CGCACACACGAGGAGAGCAGAUGAGAGCA

1 no match

9670 AUCGAGAACAACAGCAACGGAGACC
9671 GUAACAGACAACUAGACCGAUUUAU

LTR

1731

CG1828-RA¦dre4
LTR

0 ncRNA

mdg3
rRNA

LTR

invader4
rRNA
CG31359-RA¦Hsp70Bb

rRNA

CG2637-RA¦Fs(2)Ket

rRNA
LTR

opus
5SrRNA

snoRNA
LTR

Idefix

0 transposon

LTR

diver2

1

0 transposon

LTR

invader3

1

0 transposonDNAtransib2

9672 UCCGAUUUCGAGUACCAGGCGAA

1

1 repeat9673 CAGUUCAUUCUUGAGGCCUUCGAGA

1

0 transposon

9674 GCACACAGAGGAGAGCAGAUGAAAGCA

1 no match

9675 CAACUACGAAACUCAAACUCCCGGA

1

0 no annotation

9676 UCCCCCUCUAAGACGUGCAACCGCGAAU

1

1 transposon

9677 UGAACCACCCCGGUCAGAUUGCCAA

1

0 coding gene9678 GGAUAUAUCACUAGACCCAUUACUCU

1

2 transposon

LTR

roo

9679 GCUUCAUCCAAGCGAACUGUGCCCGG

1

1 transposon

LINER1-element9680 ACCUAAACGACGAAAACUAAUAAAGAG

1

0 transposon

LTR

opus

9681 CAAAGGAGUAUUGCCAGAUGACAAGA

1

0 transposon

LTR

gypsy89682 UAGUAUCUAGGACUACCAUGGUUGCAA

1

0 ncRNA

9683 GCCCGAUGUCCGCGAGAUUGCCGCAA

1

0 transposon

LTR

9684 AAAAACCUAGAAGAUGAUCCUGAGUCG

1 no match

9685 CAAGAUAUGACCAAUGCAAAGACAC

1

0 transposon

DNA

9686 ACUCGCCGAAUCCCGGGGGCCGAGGGAGUC

1 no match

9687 ACCCUGAACGCGCCCUAUCUCGUC

1 no match

9688 CAAAGACGAAAUAGAACUGCACUG

1

0 transposon

LTR

flea

9689 ACGGAAUGGAAUCGAGCGCUGAGUU

1

1 transposon

LINE

X

9690 GAUGGCAAGAUGCGAUGCCGCCGCCCCAG

1

0 coding gene9691 AUACCCGAAGACCUUGAAGUGCAAAU

1

0 coding gene9692 UAAACUCGAACCCUCUUAACUAUC

1

0 transposon9693 GUCCGGACGGACGCACUGUCACAAUC

1

0 coding gene9694 AAGCAAAACCAAUCCCCAACCAAACCCCG

1 no match

9695 UGAACGCGCCCGAUCACGGAAGACCCGC

1 no match

9696 GCGAGAAAAUAUGCAAUAACUGUGG

19697 AGUGCGGGUCAUAAGCUUGCGUUGA

1 no match

9698 UGAGAUAGUCGGGCUUGAUUGGGA

19699 AGACUUCAAAGUCUACGUGCUAAAAGU

1 no match

9700 AGGCGGAACGAUACGGCAUUGAUCA

1 no match

9701 CACUUUCAUGCUUGGGAUUGUGAAC
9702 CAGAAAAGUAAAUAUUCGAUACCUCGA

1 transposon

RSP
LINE

G2

LTR

gypsy6CG8280-RA¦Ef1alpha48D

rRNA
opus
1360

CG4994-RA¦Mpcp
CG33943-RA¦BG642312
LTR

opus
CG18279-RA¦IM10

LINE

F

0 ncRNArRNA

1

0 ncRNArRNA

1

0 no annotation

9703 CUGACCUGUAUUCGGAUAAUGGAAC

1

0 transposon

LTR

3S18

9704 AGCUUCAUCCAAGCGAACUUGCCCGA

1 no match

9705 CGCUAAACACACAAGAUUGCCCACC

1

0 transposon

LINE

F

9706 CAGAACAUUAGUGGAAAUGGCCCGU

1

0 transposon

LTR

Dm88

9707 UCCGAUUUCAAGUACAAGACGAACCGAA

1

0 repeat9708 UACAAGAUGCAUACGAUGUGGC

1

1 transposon

RSP
DNA

1360

9709 GGAUCACUCGGUUCAUGGGUCGAUGAA

1

1 ncRNArRNA

9710 GCACUCGAGGCUGUGAGCAUGUAGUCC

10 coding gene

CG15572-RA¦CG15572

9711 GUGGCAUUGAGAGGCGCCGUAGUUA

1

1 no annotation

9712 AGACCGAAUCGCAAUUCCUACCGAGAG

1

1 transposon

9713 AUCCGGUAAAGCGAAUGAUUAGAGGU

12 ncRNArRNA

9714 AAUGAGAUUGAGCAAUAACAGGUCU

10 ncRNArRNA

9715 UCAUCCUCAAGACCAAGACCAGCACGC

1

1 coding gene9716 CACCAAGAUAAUCAACCCGUGUUAU

1

0 transposon

LINE

Cr1a

9717 CACGAUUACAAACACCGACUUGCCCAU

1

1 transposon

DNA

Ivk

9718 CAACUAUGAGGGAUCCUCAA

1 no match

9719 CCUGACGAAGAGCGCAAGAAGA

1

0 transposon

LTR

opus

9720 GGAGCCGGGCGUGGAAUGCGAGU

1 no match

9721 GAACCGUGAGGCUUAACCUUACAACGCC

1 no match

9722 CCUAAGACGCCUGCAGAGAACUCACC

1

1 transposon

LINE

G2

9723 ACGAGUAAUAUGAGCGCCCUGAGU

1

1 transposon

LTR

opus

9724 UGGUACUAUAGCCCAAAUCCAAU

1

0 transposon

LTR

Quasimodo

9725 UGUUUCAUCGUUAUACGGCUCGGGCG

1

1 AT-chX

9726 CUAAGAGAUAUAUUUACUGACCAA

1

0 transposon

LINE

Circe

9727 GCGACAACCAGAGUUCCCAGUGC

1

0 transposon

LTR

DM88

9728 UUCAAGGGUUACCCCAGGAUGCUGUGC

1 no match

9729 AGGACGUUAAUAAAGAUGCCGUGG

12 coding gene9730 AAAUCCAAUAAGUGCGAAAAACCGG

10 transposon

LTR

Idefix9731 GAAGAGAUAACUGAGGCGCUAAAGGA

1

0 transposonLow̲complexity

F-element

9732 CAACCAUCCCAACCAAACCCGUCC

1 no match

9733 CGAGCGUGAUGACUCCUGGGGGCAU

1 no match

9734 CUCCCUAACAAAAAUUCGAGAGAGC

1

0 transposon

DNA9735 AGGAAUAAUGGAAUAGAACCGCGGUU

1 no match

9736 ACCCUGAACGCGCCCGUUCUCGU

1 no match

9737 CGUUGAACACCCCGAACAAUUCCUGCC

1 no match

9738 UUAACUCACACCACCAACCGUUACC

1

0 transposon

LTR

9739 AGUUAGGUCUCCGGACGUGAUCACUGU

1

1 ncRNA

9740 GCACACAGAGGAGUGCAGAUGAGAGCA

1 no match

9741 CAAGGCUAAAUACUACUGACUGACCGAU

1 no match

9742 AUACAUCGCCGACGGGCGCUGACCCCU

1 no match

9743 UCAACUGUGACGGGGAUCCUCAA

1 no match

9744 ACCAAGAUUAUCAACCCGUGCUA

10 transposon

LINE

Cr1a

9745 UGUGAAAAGAGAUUGAGUCAGUCAG

1

0 transposon

LTR

invader1

9746 AUUUGCAAAAAACGAGAGCGAUAGA

1 no match

9747 UGAAUAAACAUACGCCCGGUCGCGC

1

0 transposon

LTR

GATE

9748 CAAGCCAAUCCCAACCAAACCCGUCA

1

1 transposon

LINE

G2

9749 GAUGUCGUAUCACCCAGGACGUCCGAC

1

0 transposon

LINE

INE-1

9750 CGCCCGUCGCUACUACCGAUUGGA

1

1 ncRNA

9751 GCGGGCGGCCCGGGUUCGUUUCC

1

1 ncRNA

9752 AGAACAACAGUGCAGACGGCGCCCG

1

0 transposon

DNA

H

9753 UUGACAUACAGUAUAGAGAAGGC

1

0 transposon

LTR

micropia9754 AAGGAGUCUAACACGUGCGUGAGU

1 no match

9755 GAGGUCUCCGGACGUAAUCACUGUGU

19756 AGACCCGUCGCCGCGCUCUCCCCCCCUCC

1 no match

9757 UGACAUUUACUCAUCCGAAGGCAAA

19758 AUCUGUGGGAUUAUGACUGAACGCCUC

1 no match

9759 ACCGAAAUGAAUUUGGCUAGCGCU
9760 GCCGACAAGUACGAGAAGAUGAAGGA

LTR

Quasimodo

CG32486-RD¦CG32486

AT-chX-B

pseudogene

1360

invader1
rRNA

rRNA
tRNA

2 ncRNArRNA

1 transposon

LTR

McClintock

1

0 transposon

LTR

GATE

1

0 coding gene

CG3213-RA¦CG3213

9761 UGCUUGGACUACAUGUGGUUGAGGGUU

11 ncRNArRNA

9762 GUCAUUAACUCGCAUUGAUUACGUCCCU

10 ncRNArRNA

9763 UCUCAUCGUCGUAGAACAAGCCG

1

1 Su(Ste)9764 GGAAAUAGAAGAAAUUGCCGUUAC

1

0 transposon9765 CGGGCCGUUCAAGCAGUAUCUGAUCC

10 coding gene9766 UAAAGAGACAAUUGACGGUACCGCA

1

0 transposon

LTR

Dm88

9767 UGCUCUCGGAUGUAUGCCCGAUA

1

1 transposon

LINER1-element9768 UGGGAACACCGCGUGUUGUUGGCCUC

10 ncRNA

9769 UGUCCCGGGACCCACCAAAUUGUGAGUU

1

0 transposon

9770 GUUGCAAGAAGUGCGUCCCAACGUU

1

0 no annotation

9771 CUACCACGUUGAUAGGCCAGGUGUGGAA

1 no match

9772 AGUUUUAUCCGGUAAAGCGAAUGAUU

1 no match

9773 CGUAAACUGCAUUGCCCUGAUAAAU

1

0 transposon

9774 GGUCCUGACCGCUGCUCACUGUACC

1

0 coding gene

CG6467-RA¦Jon65Aiv

9775 UGCCAAACCGGAUGAGAUGGUGCCC

10 coding gene

CG30376-RA¦CG30376

9776 ACCAGAGACGGUGAGAGUCCGGUAGAC

1 no match

9777 AAACCUGAGAGUUUGAUCCUGGCUUC

1 no match

9778 UGCGAAUUGAUGAGUGCGAGCGA

1

0 no annotation

9779 CUGAAAGAAACAACAACGUGCGAGU

1

0 transposon

LINE

G6

9780 AAAGGUGGAAAUGAAGAAAGUACA

1 no match

9781 CAAAGGUGGAACUUGAGGGGAUCCUCAA

1 no match

9782 CUAAGUCCAUAUUGGAAAAGCUCGA

1

2 transposon

LTR

Idefix9783 CUGAGUGCCCGGGGAUUUUGGCUAG

1

0 coding gene9784 UACUGAUCCACACAGUGAAGACGAGAC

1

0 transposon

LTR

frogger

9785 UGAUCCAAUAAAACUGUACACAGACG

1 no match

9786 GCGGUUAGACGAAGAGACCCCGUGCAC

1 no match

9787 AGGCUGGGGCGGCACAUCUGUAAAA

1 no match

9788 ACCCUCUGAUGAUGUGUUGUUG

1 no match

9789 AGCUUCAUCCAAGAGAACUGUGCCCC

1

1 transposon

LINER1-element

9790 ACCCCUCCCACGGCGCGACCGCUCU

1 no match

9791 AUCGCUCGAUGUCGUAAGGUGAC

1

0 coding gene

Su(Ste)LTR

G4CG8058-RA¦CG8058

5SrRNA
LINE

baggins

LINE

G2

CG14577-RA¦ORMDL

CG40609-RA¦CG40609

9792 GGAACCUGAGCGACCUACAGGAUGAGC

19793 GCGGGUAUAGCUCAAUGGUAGAGCUCU

1 no match

0 coding gene

CG8349-RA¦CG8349

9794 GCGAAUGAUUAGAGGCCUUAGG
9795 AUAAUCGAAUGAGACCUUGGAGGA

10 ncRNArRNA

1

0 ncRNA

9796 GUGGAUGAGAUCUCGUCACCCGUUGGA

1

0 transposon

LINE

X

9797 CUGUACUCCAUCGGAGAUGCUACGC

1

1 transposon

Unknown

RR509609798 ACGGAAAUCCAUACAGACGCUU

1

0 transposon

LTR

diver29799 AGGAGUCCGUGGCAUUCAGGUUGGCUA

10 ncRNA

9800 AGAGCACUUAAAAGAAAUUGGAAUUGA

1

0 transposon

LINE

Cr1a

9801 AGUAAUAGCAUCUGUCUACUGUCCGCCC

1

0 transposon

LINE

G2

9802 ACCGUGAGGGGAUCCUCAA

1 no match

9803 AGUACAUCGAAAAGCGAGUUGACGUG

10 transposon

LTR

Max

9804 GGCGAGACGGGUGACAGCCCCGUACGGGA

1 no match

9805 ACUACCUUGAACGAACAAACGCAGC

1

0 transposon

LINE

Doc2

9806 CCCAAGCAUGCAUGAUGAUAACAUCCGA

1

0 transposon

LTR

flea

9807 AUAAUAAAUAAAAGGUGACCGGCAAC

1

0 AT-chX

AT-chX-A

9808 AAGAGGGCUUGAAACCGUUAAGAGGU

1 no match

9809 AUAGCUCAGUCGGUAGAGCAUUG

10 ncRNAtRNA

9810 GGGACGGCGGAGCGAGCGCACGGGG

1 no match

9811 UUGACUAUUAUUUGGAGAACCACAGC

1

0 transposon

9812 GCCGUCCCUUGACCUGCCCAAGAACAA

1

0 coding gene

9813 GCUGUCCCUAGUACGAGAGGACCGGG

1 no match

9814 UACGACUUUGGAUUUAACUAACGGU

10 transposon

LTR

diver29815 ACCCUUGAUAAACGGUUGGCUUUCG

1

1 transposon

LINE

Rt1b

9816 CAUCGAGAACGUGGCCGACUGGGAGG

10 coding gene9817 UGUUUCAUCGUUAGACGGCCCGGGUUCGUUUCCC

1 no match

9818 GAGAGACAAAUGGCAUAGCUUCCGAA

1

0 transposon

9819 GGAGGCCAUGAAGAAAUUGGACGCG

10 coding gene

9820 GUAUCCGCGGCUAGACGGAAAGACCCCG

1 no match

9821 UGUUGAUCGUUAGACGGCUCGGGC

1 no match

9822 CCGCGAACUGACGGUACCAUGCGUAA

1 no match

9823 AGGAGAUCGUGAGUUCGCAUCU

1

1 ncRNA

9824 CAGAUAUGACCAAAACAAAGACAC

1

1 transposon

DNA9825 GAUUCCGGAGAAGAACCUGAGAAA

1 no match

9826 AGUCGUCUCAGUUCGGAUUGUCCUCUG

1 no match

9827 UAUUAAGGGAUUACUAGCACACGAG

1

0 transposon

LTR

invader1

9828 UAAGGCGAUAUACCAAUAGAUUGG

1

0 transposon

LINE

Circe

9829 AUGGCUCUCUCUGUCGCUUCCCGGGA

1

1 ncRNA

9830 GGUCCUGAGAGACUGGGCGAGCGCCGUU

1 no match

9831 CUGGGAAACAAAAAUUCAGGUUGG

19832 GCGGAGACGUCGGCGGGGGCCCUG

1 no match

9833 GUCAUUGAAAAAUAACAAUACUUGGGA

1

0 no annotation

9834 GCCACACCAAGACAUAUUGUACCC

19835 CAGGAUAAAUAAGUAGACUUCGAGG

1 no match

9836 CGACAUCGGAAAACUCUCAGCAGA

19837 GGAUCUUGGGAGCGGGCGGGCGG

1 no match

9838 CACUGCAAUACUAAGUCGAUCCAGA
9839 UGAUCUUCACCGUUGACUUGCCCC

0 transposonrRNA

7SLRNA-RA

LTR

opus
CG12736-RA¦CG12736

CG11020-RB¦nompC
LINE

Rt1b
CG32425-RA¦CG32425

tRNA
1360

rRNA
LTR

Idefix

0 transposon

LINE

F

1 transposon

LINE

Circe

1

0 transposon

LINE

Doc3

1

1 Su(Ste)

9840 GAGAUAUGCUAGCAGACUGGAGA

1

0 transposon

LINE

G2

9841 AUGGGUAAAACAAAGCGUGUCGUU

1

0 transposon

DNA

RR514769842 CGGCCCGAACCCUUCUGGUGUGUU

1

0 transposon

LINEbaggins

9843 GGAUCCUCAACUGUGGAGGGGAUCCUCAA

1 no match

9844 AGAACCAUCACUGGGGCACCGUGU

1

1 transposonLow̲complexity

F-element

9845 CAGACCGAAUCGCAAUUCCUACCGA

1

0 transposon

LTR

Quasimodo

9846 UAGUUACUGCGAUGGGGGGACGGAGAA

1 no match

9847 GUUCGUUCCUGGGCGAAAUCACCA

1 no match

9848 AGCCACCAUACAGCGAGGCCCGUUAUGA

1

0 coding gene9849 CCGAACUUGAGACCCCAGCCGCUCC

1

0 no annotation

9850 CCAAGGUUAUGAUUUUGAAAUUGUG

10 transposon

9851 ACCGAACGGUGCCUGGUUACGAGCUCC

1

0 coding gene9852 UAGUAGAGGUCUCCGGACGUGAUCACUGU

1 no match

9853 AAGAGUGCGUGAAACCGUUAAGAGGU

1 no match

9854 GGAGACGUGGCCGAGCGGCUGAAGGCA

1 no match

9855 UCCACAACUGUGAGGGGAUCCUCAA

1 no match

9856 GCAUUCAAUACAGCGAUAGUGGUCCC

1 no match

9857 AACAUUCAUAACCGAGCGACUGUUCAAUC

1

1 transposon

9858 UUAGUGAGGUCUCCGGACGUGA

1

0 ncRNA

rRNA

9859 CAAGCGUUGGAUUGUUCACCCAU

1

0 ncRNArRNA

9860 CUUGGACUACAUAUGGUUGAGGGUUGUA

10 ncRNA

9861 UCCGGAGUGUUGAUCCGAGCCUCAAA

1

0 transposon

9862 CUCAAAUAAUAACGGAGGUGUCCCAAGGC

10 ncRNA

9863 CCCCUAUGACUGUAGACUGUCGCGCC

1

0 transposon

LTR

Rt1c

9864 CUAUCCUGAAUUCACGCCCGCUGUGCC

1

0 transposon

LTR

3S18

9865 GCUGCGAGGUGUGGGAAACCCAGUAA

1

0 transposon

LTR

copia

9866 GGAUCCUCAACUGUGAGGGGAUCCUCAG

1 no match

9867 UGCCGGGGCGAGGAGGAGGACUAGCUA

1

1 Su(Ste)

9868 GCAUCAACGUCAAGGCCCGCGACUAC

1

0 coding gene9869 ACCGAUGGACCAAUACACACAUAUC

1

1 transposon

9870 GGACUACAUAUGGUUGAGGGUUGUA

10 ncRNA

9871 ACUUGAGACCCAACAACGCAACCGAA

1 no match

9872 GCUACCGAGACGCCCUCAACGGAGUGC

1

0 transposon

9873 AAAACAAGCAUUGUGAUGGCCCU

12 ncRNArRNA

9874 AUAUCAACCAAACCGGGUCUGGUAAAA

1

0 coding gene

CG18397-RA¦ssp3

Su(Ste)CG8280-RA¦Ef1alpha48D
Unknown

RR50960
CG17344-RA¦CG17344

LTR

GATE

rRNA
LTR

GATE
rRNA

Su(Ste)CG18594-RA¦CG18594
LTR

diver
rRNA

LINE

G6

9875 AAGAGCGCUACGGAGAAUAUUACUC

19876 CCCGGGGCUACGCCUGUCUGAGCGUCGCU

1 no match

2 coding gene9877 GACACAGAGGAGAGCAGAUGAGAGCUA

1 no match

9878 AAAAACCUGAAAGAUGAUCCUGAGUCGC

1 no match

9879 CUCGGUGUUCAGUACACACAGGGU

1

1 repeat9880 CAACCAAAGAGGCAUUGCAUUAGCGAAU

1

0 transposon

Simple̲repeat

I9881 AAAUUACAUUAGACGAGACGGCCCUA

1

1 transposon

LTR

opus

9882 UGUUUCAUCGUUAGACGGCUCGGGUCGG

1 no match

9883 UACCCUAAUAUGUACAAUGUAAAUUCGU

1

0 transposon

LINE

Cr1a

9884 AAUACAAACAGAGUUCCCGAAUGAGA

1

0 transposon

LINE

Cr1a

9885 GGCUUUGAGAGGCGCCCGUAGUUACCACCC

1 no match

9886 AAAGAAACGAAGACGAGAACAGCUCGA

1

1 transposon

LTR

invader69887 CCGUUAAACAUUUUCGCCAUUACC

1

0 transposon

LTR

micropia9888 UACCAAAAAACCCGAUGCUUCUGGC

10 transposon

LTR

9889 CUUGAAAUGAUGAUGACUAAGGU

1

0 no annotation

9890 AGGACACGUUCAACCAGAUGGGC

10 Su(Ste)

9891 CAGUUGAUCAAAGCGCCUUGCUGGA

1

2 transposon9892 GCACACAGAGGAGAGCAGAUGUGAGCA

1 no match

9893 CAACGUGGCGGCGUGAAGGGUUCCGGCA

10 coding gene9894 UGCAACGUUCACCAAUCUUCGUCAGCA

1

0 transposon

LTR

3S18

9895 CAAUACGAACUCGGACGAAGACAUU

1

0 transposon

LTR

Max

9896 AGCCCCGGAAAAUAAAAUAGAAC

1

1 coding gene9897 CGGACACCGAACCGGGAAGGCGA

1

0 transposon

LTR

Tirant9898 AAUCAAGUAACCGAGAAACGUGUUGA

1

0 transposon

LTR

invader2

9899 AAAAACCUCUCCGACCGUUAUCCGAU

1

2 transposon

LTR

accord9900 GAUGCCAAGACGACAAUCAAAAAA

1 no match

9901 UUCCCCGGAUAGUUUAGUUACGC

1

1 ncRNA

9902 GCUGAGAUAAUUGAGGCUCUGAAG

1

0 transposon

LINE9903 UGUGCUAGAAGGCGAUUUUCGGGCC

10 transposon

DNA9904 AUCUCAACUGUGAGGGGAUCCUCUAA

1 no match

9905 AACGCGACCGAUCCCGGAGAAGCCGGC

1 no match

9906 CACACAGACAAAAUAUCCUAUGG

1

0 transposon

LINE

INE-1

9907 CUGCGAGAGAUUUGGAGGCAGAAGA

1

0 transposon

LTR

ninja-Dsim-like9908 CGGGACAUCAUUCUGGCUGAUGAC

1

0 transposon

LTR

GATE

9909 AGCGACAAGAUAGACAGGCGAAACCGCA

1

1 transposon

LTR

micropia9910 ACGGCGGACGGACGGCGAGGCC

1 no match

9911 ACAAAACAAAACAUGACACCACGGGA

1

0 transposon

LTR

9912 CAAGCUGAUAUCCGACCACAGCGCU

1

0 transposon

LINE

G2

9913 CCAGAUGAUAUUCCGAAAACAGCC

1

0 transposon

LINE

Doc4

9914 CAAAGCGAGAAACCGACCGACUUAGAC

1

0 no annotation

9915 UAUGCCUGAACGCCUCUAAGGUC

10 ncRNA

9916 UCUGCUCCGAAAACAAGGCCCGUCGC

1

1 transposon

LINE

G6

9917 AUGCUCCGAAAACAAGGCCCGUCGCUAA

1

1 transposon

LINE

G6

9918 CGUGCGGUCCUUGUAGUCCAUGCGAU

1

0 coding gene9919 AACGUGACGAUCCCCACGGCUGGAG

1 no match

9920 AGGUAUAGAAAGCACCUGCAGCGC

1

0 transposon

9921 UAACGAGUAAUGGUCUUCAGGG

1

1 coding gene9922 AUGUCGACUCAUCACAUCCUGGGACUG

1 no match

9923 CAGACAAGAAGGUGGCAUCGGUGA

19924 GGACUGUGAGGGGGAUCCUCAA

1 no match

9925 AAUCAAUUCAGAACUGGCACGGACUUG

10 ncRNA

9926 CUGGACUCAUGAGAGUUGGUGGCAGA

1

0 transposon

9927 AAGAGGGCGUGAAACCGUUAGGAGGU

1 no match

9928 GCUUGGACUACAUAUGGUUGAGGGU

10 ncRNA

9929 AUCGGCCCGAACCCUUCUGGUGUGUU

1

1 transposon

LINEbaggins

9930 CUCAACUGUGAGGGGAUCCUUAA

1 no match

9931 CGAGUUACGAAGAGAACAGUUGAUGC

1

0 transposon

LINE

Circe

9932 AUGACGAGUAAUGGUCUUCGGGGCGU

10 coding gene

CG12717-RA¦CG12717

9933 UGCCAUACUGCGAUCCACUGAAGC

10 ncRNArRNA

9934 AGCAGGACGGAAAGACCCCGGGACCUUUU

1 no match

9935 GCUUUAAUCACGAGCAAUGCGGUUUA

1

2 no annotation

9936 UCGAGAACAAACGAUACUGUUCGGUC

10 transposon

LINE

G2

9937 UGCACUCGAAUGUAUGCCCGAUAU

1

1 transposon

LINER1-element9938 CGCAAACCCAAAAAGACAAUACACGAU

1

1 repeat9939 GUGGAGCCGUACCUGUUGGUUU

10 ncRNA

9940 UCCGCAAAGACGACAAAUUGGCCUAU

1

1 transposon

LTR

rooA

9941 GUUACUAUGAUGACGAGUCUCAAGC

1

0 transposon

LTR

opus

9942 GCCAGGAUGGCCGAGUGGUCAAA

1

2 ncRNA

9943 CAUACCAACAGUAGACAAUGUUCCGG

1

1 transposon

9944 AGCCCGGGAUAGCUCAGUCGGUAGAGCAUUG

12 ncRNA

9945 UCCGCAAUAUGACAAUCGCUCGAUG

1

2 coding gene9946 CAUCUUAUAAAUGAUGAGUCGCUGU

1

0 transposon

LINE

Cr1a

9947 CUGACAAAAAAAACCGGCGCAUAGCGA

1

0 transposon

LTR

Rt1c

9948 AUCUCAUCGUCCUAGAACAAGCCCGA

1

2 Su(Ste)9949 GACCAGGGGAAUCCGACUGUUU

12 repeat9950 AAGACAAUCAAGGCUGUAUUAGCA

1

0 transposon

LINE

Cr1a

9951 UCAAGCGAUAUUCGAGGCCCAACA

1

0 transposon

LINE

Doc4

9952 UGCACAAGUUUAGUCUCUUCCGACA

1

0 transposon

LTR

diver29953 CACCUGAAGAUCCGCAACCCAGCA

1

0 transposon

LINE

G2

9954 AGAGAGAGGACGGGAGCGGCGGGGGC

1 no match

9955 UCGCCGGCCGAGGUGGGAUCCCGA

1 no match

9956 CAAAAGCUCAGCCUAUCGAUCCUUU

1

1 ncRNA

9957 GCAUGCUUAAAUUCAAGGCCAUU

1

0 transposon

0 transposon

CG3354-RA¦Mst77F

LSU-rRNA̲Dme

297
Su(Ste)LTR

flea
CG6652-RA¦CG6652

CG17342-RA¦Lk6

rRNA
Doc
1360

297

rRNA

CG11719-RA¦Mst98Ca
LTR

copia
pseudogene

DNA

H
rRNA

LTR

diver2
rRNA

trf
rRNA

tRNA
LTR

accordtRNA
CG40609-RA¦CG40609

Su(Ste)
LSU-rRNA̲Dme

rRNA
LTR

roo

9958 GGGGAAUAAGGGUUCGAUUCCGGA

1

1 ncRNA

9959 UACGUAAACAACCCCAGGCUGACUCCAU

1

1 transposon

LTR

rRNA
Rt1c

9960 GUCCUUAACAAGAACGACGUUGUCC

1

0 transposon

LTR

diver29961 CUCGCUUGAAAUGAUGAUGACUAAGGU

1

0 no annotation

9962 UUCGUGGAGUGAUUGUCUGGUU

1 no match

9963 UAUUAUUAAGAUAGGGCUUGUAGGU

1 no match

9964 GGCGGCGACGACCCAUUCGAACGU

1 no match

9965 GAUUCCGGAGAGUGAGCCAGAGAA

1

2 ncRNA

9966 ACCAACGUACAAAUCGAGCAACUCGUC

1

0 transposonLow̲complexity

F-element

9967 GAAGUGGGUUUCGGCUACGAGUAGG

1

0 transposon

LINE

G6

9968 UCAGGUCGGAGCGCGGUGAGAAUGA

12 Su(Ste)

9969 UAUGUGCUCGUUCUGGGUAAAUA

1

0 ncRNA

9970 AACUACAUUGAUGCUUAUCCCGAA

1

0 transposon

DNA

Ivk

9971 AGAGAGCUCUGAUGACGAACCCG

1

0 transposon

LINE

G6

9972 AGAGUCUACACGUGCGCGAGUC

1 no match

9973 GGCACGAAGACGUUGUUAUAGCGAG

1

0 no annotation

9974 GAACUUGAGAUCGCCCCUGGACGAC

1

0 coding gene9975 AGAGGGCGUGAACCGUUAAGAGGU

1 no match

9976 UGACGCCAGAGGUAGACGACCGG

10 transposon

LINER1-element

9977 AAGGAAAGUGCGAAAUUCAUCUGGA

1

0 transposon

LINE

Doc3

9978 AAUCAACUGUGAGGAUCCUCAA

1 no match

9979 AGGGGAUGAGCUGUGGGUAGG

1 no match

9980 AACACAUCUCGAUCCCAUGUCCGUUGA

1

0 transposon

LTR

Idefix9981 AGGGUUACUAUGAUGACGAGUCUCAA

1

0 transposon

LTR

opus

9982 UUAAUGCCGGAAGCGAUCCCACUG

1

0 AT-chX

9983 UACUGAGACAUAGUGACAUCGGCCA

1

1 no annotation

9984 GGAGCCGGCGUGGAAUGCGAGUGCCU

1 no match

9985 UCCGAAGUAGACCGACCGAAACAGUCGC

1 no match

9986 CUCAGCGAUGUGUGGGCCAAGUCAAC

19987 AAUCUCGCGCCGUGCCGUACCCAU

1 no match

9988 CUGGAUACUAUGUAUCCCCGGGUAA

1 no match

9989 UCCUGACACUGGAAUUUCGUCGAAGGC

1

1 coding gene

9990 AUCUCCAAAGGCAUAGGGCAAGACAG

1

0 transposon

LINE

G2

9991 UUAAGUCACGAUAGCCUAUGAUAUACA

1 no match

9992 ACAGAAGGCAACCGAGGGAUCUCAU

1

0 transposon

LINE

X

9993 CGACUCGUUUUAAAUUCGCAACAAG

1 no match

9994 AAACUGAAUAAACGAAAUGGAUGA

1

0 transposon

LTR

invader49995 AAGAAGAGGAAGGCGACGACGGGCG

11 coding gene

CG11857-RA¦CG11857

9996 AGCGGGGGAAGAAGACCCUGUUGAGC

12 repeat

LSU-rRNA̲Dme

9997 AAGGCCGAGAACUGAUGACGAGUUA

1 no match

9998 UAGACUUAAAGAUGAUGAACCCAUU

1

1 transposon

DNA

NOF

9999 UAUCAAGAAAUCCUUUAUCACCCGA

1

0 transposon

LTR

micropia

10000 UGCCCUGAAUGUAUGCCCGAUAUAC

1 no match

10001 AACACGGGAAAACUUACCAGGUCC

10 ncRNA

10002 AUGAAUGAGAUGCAGCUAUAUAGUAGCA

1

0 no annotation

10003 UACCAUGGUUGCAACGGGGUAACGGGGGA

1 no match

10004 AGCCGAAGUCAUUGUGCGCCAGAGUUA

110005 ACGAGCGCACGUGUUAGGACCCGUAA

1 no match

10006 CCGGACUAGAAGUGCCCGCCCCACC
10007 UACCCCCAAUGAGAUGGCCUUUGGCGArRNA

Su(Ste)rRNA

CG42398-RA¦SteXh:CG42398

AT-chX-B

0 Su(Ste)

Su(Ste)CG17949-RA¦His2B:CG17949

rRNA

1 transposon

Simple̲repeatI

1

0 transposon

LINE

Doc

1

0 transposon

LTR

Quasimodo

10008 AAGCCCGAUGAACCUGAAUAUCC

10 ncRNA

10009 GGUCCCCGCGGAUGCUCACGCAAUGUGAU

1 no match

10010 UGUUUCAUCGUUAGACGGCUACGGGCGG

1 no match

10011 AAAGAAAGUAUUGGAUUUUCGGGUU

110012 CGCUCAAAAACUCCCAUCCUUAUG

1 no match

10013 AUUAGAAAGUGACCCUGUUGU
10014 UCCGAGGAACCCAUUGAUCCAGCUGC

rRNA

0 transposon

DNA

HB

1

1 transposon

LTR

Idefix1

0 no annotation

10015 AUUGUGGGCCGGUACUAUUACUUU

10 ncRNA

10016 CACAAAGUUAUUCUUCUACCGAUGGAGG

1

0 transposon

LTR

Rt1c

10017 GAAAACCUGAAGAUGAUCCUGAGUCGC

1

0 transposon

LINE

Helena10018 GCGACGAGAAAAUCUGGAUACCCUGU

1

1 transposon

LINE

G5

10019 AUGGCAUAAAAUAGAUAACCUGAUUG

1

0 transposon

LINE

Cr1a

10020 CCACAGAGUACGGGGCUUACUAAAGU

1

0 transposon

LINEbaggins

10021 UCGGCCAUAGUGAUCCGGUGGUCCCGA

1 no match

10022 UAGAUGUCCUGGGCUGCACGCGCGCU

110023 GUGGGUCUUGUUCUUAGUUCGUGGAGU

1 no match

10024 UGUCCCAAGGCCAGCUCAGUGCGGAAA

110025 UGUUCCCCCGGAUAGUUUAGUUACG

1 no match

10026 CACACUUGACGAAAAUGAUCGAGU

110027 GGUCCUGAGAGAUGGGCCAGCGCCGUU

1 no match

10028 AGAGAGAUAGUUAUCAGGGUUCACCAAA

1

0 coding gene

CG32396-RA¦CG32396

10029 GUGCCAACGUCCCGAGAACUGAAAGAA

1

0 coding gene

CG3800-RA¦CG3800

10030 UCAGACGAAGUUCAAGGUUACCCCAGGA

1

0 repeattrf

10031 UGUUUCACUCGUUAGACGGCUCGGGC

1 no match

10032 UGGAAUGUUUUCGUCCCACCCAAGUUC

1

0 transposon10033 GUGAUCGUCUAGUGGUUAGGACCCC

10 ncRNA

10034 AGAACAACAGUGCAGACGGCGCCC

1

0 transposon10035 UUAAAUGUAAAUGACCUGCGACGCGG

1

0 no annotation

10036 AUGGGGCCCCGAAACCCCUUUCUGGGUGUGU

1 no match

10037 GCCGCGGAGCCUCGGUUGGCCUCGGAU

1 no match

10038 GGCUCCUCAACUGUGAGGGAUCCUCAA

1 no match

10039 UAAACUACUACAACAACGCCGACUG

1

0 transposon

10040 GACUAGCUGGCCGAGUAUUUGAUAUUC

1

0 Su(Ste)rRNA

0 ncRNArRNA

1 ncRNArRNA

0 transposon

LTR

LTR

McClintock

GATE
tRNA

DNA

H

LTR

Stalker2
Su(Ste)10041 UCCUCAACUGUGAGGGGGAUCCUCAA

1 no match

10042 AUCAACUGUUCAAUC

1

1 transposon10043 UAGCUAAUUAACACAAUCCCGGGGCGUU

10 ncRNA

10044 UAGUUCACCGAAGCGCCUUACUGGA

1

2 transposon

LTR

diver210045 CUGUCUAUUCGCCAGGUCCUGAC

1

1 transposon

LINE

Cr1a

10046 AAGGGAAUCAACGAGGCGGAC

1

2 coding gene

10047 UGAUUAAUAGGGACGGUCGGGGGC

1 no match

10048 AAACGCAUGCACUCCCGCCUGGA

1 no match

10049 AGGAGAGAAAGAAGUAACGGGGCCG

10 coding gene

10050 ACCUGAUUGAUAGCGUAGAUGACGACC

1

0 transposon

10051 UGCGGCUUAAUUUGACGCAACACGGGA

1

1 ncRNA

rRNA

10052 AGCUAACGACAAGUAGGGCGGGACA

1 no match

10053 AUUGAGAUAGUCGGGCUUGAUUGG

10 ncRNA

rRNA

10054 CGCGAUGAUUAAGAUGGAUGUCAUU

1 no match

10055 AAAACCAAUAUGGACGUAUGGAA

110056 AAGAACGAAAGUUAGGGGAUCGAAGA

1 no match

10057 CGAGACUACAAACGGAUUGCGGACCG

110058 CGCAGAGUCAUGCCAGUUGGAC

1 no match

10059 UGGUUCCCUCCGAAGUUUCCCUC

1

1 ncRNA

10060 GCGGAUUAUUACAGAUGAUGGAUCA

1

2 transposon

DNA

H

10061 CAAACCAAUCCCAACCAAACCCGUCAUU

1

2 transposon

LINE

G2

10062 GCUGGUGCAUGCCUGUGGUCCCAACU

1 no match

10063 CGCAAACCCAAAAUUACAAUGCACGA

1

1 no annotation

10064 AAGAGCGAUAUCCGAUGCCGAU

1

2 transposon

LTR

diver210065 GCGCCCUGGGAGGCACCAUCCCCGA

1

0 coding gene

10066 GAAAAUGUGACGAAAUCUGGAUACCG

1

2 no annotation

10067 GAAAUGACUCUGUCCCGAUUCAAGA

1

0 transposon

10068 GAAAGAAGCCCCUGUUGAGCUUGACUCU

12 repeat10069 GAUGCAAACUCCGAAUACCAGCAAGUU

1 no match

10070 UGCUGAAGAAAGGAGAUGCGUUGCCAA

1

0 transposon

LTR

diver210071 GAUGAUCGAUGACGAACUACGAAGG

1

0 transposon

LTR

ninja-Dsim-like

10072 CGCAAACCCAAAUCGACAAUGUACGA

1

1 repeat10073 UUUAAUCCGAAUGUAGCAGAAGUGG

10 coding gene

10074 CAAAGGCAAAAUAUAUUGUGGGUGCA

1

1 transposon

LINE

TART-A

10075 GACGAACUACCGAGCCCGAGCCUUAAU

10 transposon

LTR

Max

10076 UGCCCCACUACGUACCGCACCGCU

1

0 coding gene

CG11567-RA¦Cpr

10077 CUGCGAUCCACUGAAGCUUAUCCUUUGC

10 ncRNArRNA

10078 UCUCAUCGUCGUAGAACAAGCCCGGGG

1

1 Su(Ste)

10079 UGCCCUCGAAUGUAUGCCCGAUA

1

1 transposon

10080 UUCGGGAUAAGGAUUGGCUCUAAGG

1

2 ncRNA

10081 AACCUAAUCACGUUCGGUGCCCGAAAUU

1 no match

10082 CGUAAACAAUUCAAGAUCUGGCCGG

1 no match

10083 GGGGCCGUAGCUCAGUUGGUAGAGC

1 no match

10084 UGCUCUCGAAUGUAUGCCCGAUAUUAU

1 no match

10085 GAUCCCCCUGAAGUCCAAUGCAC

1

0 transposon

LINEbaggins

10086 UCCCACGGAACACCAGAGCAAUCCCA

1

0 transposon

LINE

G

10087 UUCUGACGAGAACUCGAGCCGCGUAGC

1

0 no annotation

10088 CCCGGGGGCGUUCUAUAUAGUUAUGUAU

12 ncRNA

10089 AACCAGCUAGAGUACAGAUCGAAA

1

2 transposon

10090 UCCGAGCUAAUAUGGCACCAAGCU

1

1 no annotation

10091 GAACGAGAUUCCCACUGUCCCUAC

1

2 repeat

LSU-rRNA̲Dme

10092 UGUAUCAUCGUUAGACGGCUCGGGC

1

1 AT-chX

AT-chX-B

10093 GAAAGCACCGUUUCCCGUCCGAUCAA

1 no match

10094 AAUGCCGUUCGUCCUGGAGUCCCGA

1

0 coding gene

CG10252-RA¦CG10252

10095 GAGGUUCGAAGGCGAUCAGAUACCGCCC

10 ncRNA

10096 AAAGUCGAACUGGAUCCAUCGAGUC

1

0 transposon

10097 GUGCGCAAGUCCCGGAAUGAGUA

1

0 coding gene10098 CGCACCGUGAUUGGCUCAACCGGCGAA

1

0 transposon

LINE

G

10099 AGCAUUCGAGACCCAACGGCACGUGA

1

1 transposon

LINE

INE-1

10100 GCUCCCUGGCGAAACUGGCCCCCA

1 no match

10101 GCAAAAACCAGCGAUAACGAAGAAAGU

1

1 transposon

DNA

RR51476

10102 CGUGAUGGGGAUCGGGGGAUUGC

1 no match

10103 AUGCCGGGGCGAGGAGGAGGACUAGCU

1

0 Su(Ste)

10104 ACUGGCGCCGUGGGAUGAACCAA

1

1 ncRNA

10105 CAGUUACGAAAAAUAUUUCCCGCAG

1

0 transposonLow̲complexity

F-element

10106 GUAUCUGAUAGUCGCGGACUCGA

1

1 transposon

LINE

INE-1

10107 UAAACCUGAAUUGAGCACUAAAUCGU

1

0 transposon

LINE

BS

10108 UCCAGAUAAAUCACCGUGCCUACGU

1

0 transposon

LINE

INE-1

10109 AUGUCUGCCCUAUCAACUUUUGAU

10 ncRNA

10110 GAGGAAUUUGAGCUGCGAUGACGCCGAA

1

0 transposon

10111 GAAGCUCGCGAAGGAAAAAGAC

1

0 coding gene

10112 AAGUUAACUAUCCCAAAGGCAUCAC

1

0 no annotation

10113 AUGAUAUGCACCGAAACUAUAUGA

1

0 Su(Ste)

10114 UGUUCAUACAAUUGAGGCUGGAG

1

0 transposon

10115 GUGGCCUGAUUGCUAUGCACCGAAAA

10 repeat10116 CGGGACAUCAUGCUGGCUGAUGACC

1

0 transposon

10117 UAAGCCCGAUGAACCUGAAUAUCCGU

10 ncRNA

10118 GAAUCACCGAGAGCCACAUUCUGCCGU

1

1 transposon

LTR

gypsy610119 ACCGAAGAAAACAAAGCCUCCGCC

1

0 transposonLow̲complexity

F-element

10120 GCAAUCACCGCCACUGCAGCCCAUGUCC

1

0 coding gene

10121 AUGGAACACAUAGAGGCUUCGAGGA

1

0 transposon

10122 CUACGGGCUGGACCGGACCGGCAAGGG

1 no match

10123 CAGAGGAGAAGACCGCAGUACUGAACU

1

0 transposon

LINE

G3
rRNA

CG31029-RA¦CG31029

CG6770-RA¦CG6770
LINE

LINE

Rt1a

Porto1

1 no annotation

0 coding generRNA

CG18211-RA¦betaTry
LINE

R1-element
LSU-rRNA̲Dme

trf
CG30438-RA¦CG30438

Su(Ste)LINE

R1-element
rRNA

rRNA
LINE

jockey

rRNA
LINE

Doc3
CG8954-RA¦Smg5

Su(Ste)
rRNA

rRNA
LTR

ninja-Dsim-like
CG1979-RA¦CG1979
Su(Ste)Low̲complexity

F-element
trf

LTR

GATE
rRNA

CG5987-RA¦CG5987
LTR

HMS-Beagle
CG7004-RA¦fwd

10124 GCGGAUAUAAAAGCAUCGGGGCGG

1

1 transposon

LTR

opus

10125 UGCUUCCGGGAUUUUGACGCCGUUAAU

10 transposon

LTR

opus

10126 AAUAAUCAAAGACAAUCUCAGCCCGAU

1

1 transposonLow̲complexity

F-element

10127 UGAGGGAACCACUUUCAUGCUUGGGAUU

1 no match

10128 AAGGAGAGCAAUUUUGGCCGUCACUA

1

0 transposon

DNA10129 UCCCGCAAUAUGGCAAUCGCUCGAU

1

0 coding gene10130 CAAACCAAUCCCAACCAAACCCGUCC

1

0 transposon10131 AAACUGCUGCAAAUGGACGAGCCGA

1

0 coding gene10132 CAAGCUAGCCUAUGUAUCCCCGGG

1

1 transposon

LINE

Doc

10133 UGCGGGAUGAACCGAACGCCGGG

1 no match

10134 CUGUGCAAAAGCAAAAGCGAACGCCCG

1 no match

10135 AUGGAACAGAAACCCGCGCCAGACGG

1

2 transposon

LTR

ninja-Dsim-like10136 AAAAACCUGAAGAUGAUCCUGAGUCU

1

2 transposon

LINE

Helena10137 CUACAUUCGGCUCUGUAACUCGGCAAU

1 no match

10138 ACCACCCUGAACGCGCCCGAUCUCCUC

1 no match

10139 UCCAAAUGCAAAAAUCAAGAGAUGGA

1

0 transposon

LTR

Burdock

10140 CUCUCAACGGGAUUGAAGGCGAGCGGC

1

1 coding gene

CG7361-RA¦RFeSP

10141 UGGGAACACCGCGUUUUGUUGGCCU

1

1 ncRNA

5SrRNA

10142 GGAUCCUCAACUGUGAGGGGGUCCUCAA

1 no match

10143 ACGGGAAACCUCACCCGGCCCGGACACGG

1 no match

10144 ACCCAUGAGCGAGUCAUUCCGACAA

1

0 transposon

LTR

blood

10145 AACGAGAGAAGCAUUUUUGCCGCAAAC

1

0 transposon

LTR

gypsy1210146 AAUACUGUGGCGACUUUAGGUAGGAGA

1

0 coding gene10147 AAAUCAACAUACACUACUCCGAAUG

1

2 transposon

10148 GUCUUCCUUAAACGUUACCACCUUU

1 no match

10149 UGUCGGCUCUUCCUAUCAUUGUGAAGC

110150 UCAACUGUGAGGCGAUCCUCAA

1 no match

10151 CGGACCACCAACCGUUGACAUUCGCG

1

0 transposon

10152 CAACCAGAGAUCUAGAGGGCCAAA

1

1 no annotation

10153 GUUUGACUGGGGCGUACAUCU

1 no match

10154 CAAAAGGGGAACUGAGGAACGCAU

110155 UAACGAGAGUAGUGAAGAGGAAGAG

110156 CUCCGGGGGAAGUAUGGUUGCAAAGCUG

10 ncRNArRNA

10157 GUCUGGUUAAUCCCGAUAACGAACGAGA

1

1 ncRNArRNA

10158 GGAGGGAUGGGACCGAUGAAUCCGCGC

10 coding gene10159 GACAAAUCUACGAACAUACGACGUCAA

1

1 transposon

LTR

diver210160 GGCUGCAAUUGUUUCCCGUGGGACUAC

1

0 transposon

LINEbaggins

10161 AGUGUGACCCACCGCCCGAUCUUA

1

0 no annotation

10162 GCAGCCCAACGAGCCAAUAAACGGAUCA

1

1 coding gene10163 AUUAGUGACGCGCAUGAAUGGA

1

0 ncRNA

10164 CAUGAUGCAACAUGCUGACCAUAGGU

1

1 transposon

LTR

diver

10165 ACUCGCCGAAUCCCGGGGCCGAGGA

1 no match

10166 UGACCCGUGAUGGAGGCGGCCGGGAU

1 no match

10167 UGCGAAAUAAUUGCCAGAGUCAC

1

0 transposon

LTR

Quasimodo

10168 CAAAGCGGGACCUCUUAGGCAAGAC

1

0 transposon

LINE

G3

10169 GAUCCUCAAUUGUGAGGGGAUCCUCAA

1 no match

10170 ACGAACGAGACCUUAACCUACUAAA

1 no match

10171 CCGCCCCCGGCCCCGCGUCCUCC

1 no match

10172 GCCUUCGAGAGAUAUAUGGCCCAGUUGA

110173 AUACAUGCCGACGGGCGCUGACCCCU

1 no match

10174 ACUACUUUCAGGACACUUUCAACCAGA
10175 UUGGACCGAACACUUUGAACCAAGUAUU
10176 ACGAUGGCCACACUGUCUCCUCCUGAAA

1 no match

10177 UCACGUUAUCCUAGAAGAACAUUGAAGC

1 no match

10178 AACACUAACUGGAGGACCGAACCGACU

1 no match

10179 AAUACAAACAGAAUUCCCGAAUGAGA

1

0 transposon

10180 CGACCCAUUUCUGUUACUUUGUGUC

1

0 repeat10181 ACAAUAGCUGAGCCGUACUAAGUGGCC

1 no match

10182 CCCGAUGAGAAGAAUGGCCCGUAAA

1

0 transposon

10183 CGCUAGAAUCCGCAAGAAGGGCGAGG

10 coding gene10184 GAUGGUGUAGCAUCGAUCGCUGUGUGGC

1 no match

10185 ACAAACGUUCUUAGAUGAGUAUUCCGA

1

0 transposon

LTR

Rt1c

10186 UAAUGUUGGCCAAUUUCGAGUAUA

1

0 transposon

LINE

Cr1a

10187 AUAAUAAAAGGUGACCGGCAACGACGU

1

2 no annotation

10188 CGGUCUGGUGGUUUGAGCGGUG

1 no match

10189 GACCACGCCGUCACCGAGGUCCUGCC

1

0 transposon

LTR

ninja-Dsim-like

10190 UCACACUCAUCAACCAAAGGACGU

1

1 no annotation

10191 UCUUCUAGGGAUGGCGUGAUUUUAAA

12 Su(Ste)

Su(Ste)10192 UUGAGACCGCCCCUGGACGACCCAG

1

1 Su(Ste)

Su(Ste)10193 CUGUGAGGGGGAUCCUCAA

1

2 no annotation

10194 AUAGCUAAUUAACACAAUCCCGGGGCG

10 ncRNA

10195 GUUCAUCUCCGGUAGCAUAAAGA

1

0 transposon

10196 GCCGUUCUUAGUUCGUGGAGUG

10 ncRNA

10197 ACAAGCUAGACUAUGUAUCCCCGGGU

10 transposon

10198 GAUCCAGCUGUGAGGGGAUCCUCAA

1 no match

10199 AAAAGGAGCGAUUUUUGGCCGUCACUA

1 no match

10200 CACUUCGAACCAGGUGCCAGAGGG

1 no match

10201 UAUAGCUAAUUAACACAAUCCCGGGGCG

110202 GUAACUUCGGGAUAAGGAUUGGCACAAU

1 no match

10203 UGCCAAUUACAUUAGACGAGACGGCCCA

110204 GUCGGAGGCUGGCGGCGGGGGGGU

1 no match

10205 GGAGCCGUACCUGUUGGUUUGUCCCAUU

10 ncRNA

10206 CCCAAACGCAGACAUCGAGCGGUCA

1

0 transposon

1360
CG40609-RA¦CG40609

LINE

G2
CG4799-RA¦Pen

CG12250-RB¦CG12250
LTR

0 ncRNA

Idefix
rRNA

LTR

gtwin

0 transposon

LTR

invader3

1 transposon

LTR

Dm88

CG7187-RA¦Ssdp

CG3779-RA¦numbrRNA

1 coding gene

CG11552-RA¦CG11552

1

1 Su(Ste)

Su(Ste)10 Su(Ste)

Su(Ste)

LINE

trf
LINE

RR49783
CG4164-RA¦CG4164

rRNA
LTR

McClintock
rRNA

LINE

0 ncRNA
1 transposon

Cr1a

Doc

rRNA
LTR

opus
rRNA

Low̲complexity

F-element

10207 CGCAAACCCAAAAUUACAAUGCACGAC

1

1 no annotation

10208 CGCACUCUACGAAGCAGUCCAAGCCGA

1

0 transposon

10209 CUCAUCCUGGCAACAGGAACGACCAUA

10 ncRNA

rRNA

10210 GAUCCUCAACUGUUAGGGGAUCCUCAA

1 no match

10211 GGCGGCCCGGGUUCGUUUCCC

1

1 ncRNA

tRNA

10212 ACCGAUGGCGAAGGCAGCCUUCUGGC

1 no match

10213 GCCCGGCUAGCUCAGUCUGUGGAGCA

1

2 ncRNA

10214 CGAAAAUGCAGACCUAUUGUCAUCCG

1

0 transposon

LTR

flea

10215 UCCAACGAGAGAGCGGAGAGCCAGGC

1

1 transposon

LTR

mdg3

10216 CUAAAGUCCAUAUUAGAAAACUCGA

1 no match

10217 CGUCGCCGAGAUGGCCGAGCAGGUUGAUUC

110218 AAAAUCAACAUACACUACUCCGAAUG

1 no match

10219 GGGAAACUUAAUGACCGGCAAAAUU

1

0 no annotation

10220 GAUGUCCUGGGCUGCACGCGCGCU

10 ncRNA

rRNA

10221 CACAGAGUACGGGCUUACUAAGUCA

1 no match

10222 AACCAAGCGCGGGUAAACGGCGGGA

1 no match

10223 AUCUGCAUGUGGGUGACCGGGUCGU

10 coding gene

CG4836-RA¦CG4836

10224 AUGCUCUCGAAUGUAUCCCCCGAUA

1 no match

10225 UCCCAUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)10226 UGUUUCGCAAAAGUUGACCGAAC

1

0 ncRNA

rRNA

10227 ACUCAACCUGAGAGUUUGAUCCUGGCUC

1 no match

10228 GCAUUCGAGACCCAACGGCACUUGACAC

110229 ACCCUGAACGCGCCCCGAUCUCGU

1 no match

10230 UGUUUCAUCGUUAGACGGCUCGUCG

1 no match

10231 GCAUCAGUUAAAGGCGAAUCGCCCGAU

110232 UGGUGACCACGGGUGACGGGGUAA

1 no match

10233 UUUGAGAGGCGCCGUAGUUACCACCC

1

0 no annotation

10234 CUGCAGGAACGCUACUCUCGGGAGA

1

1 coding gene10235 UGGGAACACCGCUGUUGUUGGCCU

1 no match

10236 GAAGCAAUCAGAAAAACGACGGUCGAA

1

2 coding gene

10237 UCUGAUGUUACGCCCGUAGAGAUA

1

1 transposon

10238 GAACUUGAGACCGCCCCUGGACGACC

1

0 Su(Ste)10239 UGGAAAUUAACCGAUGCAGACAAGAGG

1

0 transposon

10240 GAGACCAGUCGCCGCGCUCUCCCCCCUC

1 no match

10241 GCCAAGAGUUCCCGUGGUAGGCAGUAG

10 ncRNA

10242 ACUCAUUUUACCCAAUUACAACAUG

1

0 no annotation

10243 UGACGCGAUGUGAUUUCUGCCCAGUGC

12 ncRNA

10244 CCACAAAGAAAAUGGCAUCCUCUGA

1

0 transposon

10245 AAAUGCUGGCGGAGCAGGCGGUCCGGGA

1

1 coding gene10246 UGAGACUACAAACGGAUUGCGG

1

0 no annotation

10247 UGAAAGUAGUUGGUGGGGCACGUGGC

1 no match

10248 UCGCAGACCCGACGCACCCCCGCCACGC

1 no match

10249 UAUCCAUCAGUCCCAGCCCAAGU

1

0 transposon

LTR

McClintock

10250 CAGUAUUGGUCCAAGAACGCUGCCUU

1

0 transposon

LINE

G

10251 UUACUGACGAAUUUAGUUACAAGCAG

1

0 no annotation

10252 CCCGGUAGCACGAGUCCAUGCGC

10 transposon

LTR

ninja-Dsim-like10253 AGCAAGUGGACCCGGUUUCUGGAGA

1

0 coding gene

CG31226-RA¦CG31226

10254 ACGACGCCAGGGGCUGCCCGCCG

1

1 coding gene

CG2049-RB¦Pkn

10255 AAGCCCGACCGUUCUGCCCAGCUGCCGC

10 coding gene

CG14011-RA¦CG14011

10256 GAGCCGGGCGUGGAAUGCGAGU

1 no match

10257 AACCCUGAACGCGCCCGAUCUCGUUC

1 no match

10258 GCUCUCGUAAUGUAUGCCCGAUAU

1 no match

10259 UGAUCCAAUAAAAACUGUACACAGAC

1

0 transposon

LTR

invader610260 UAAUAAGGCAAUGAUUGUUGAGUGC

1

0 transposon

LINE

Cr1a

10261 CACACAGAAGGAGAGCAGAUGAGAGCA

1 no match

10262 UGUUUCAUCGUUAGACGGCUUGGG

1

1 AT-chX

10263 GCAAGAACACCCGGUGGACCCCGAA

1

0 coding gene10264 AAACCAAUCCCAACCAAACCCGUCAA

1

0 transposon

LINE

G2

10265 UAGUACAAUAUAUCCGACUGGGCCAA

1

2 transposon

LINEbaggins

10266 CACAGGUACGGGCUUACUGAA

1 no match

10267 ACAAAAACGAUUAAGGAGACAACAG

1

0 transposon

LINE

G2

10268 CCUGAGAGAUGGGCGAGCGCCGUUC

1 no match

10269 CAGAUAUGACCAAAGCAAAGCAC

110270 GCAGGGUACCAGUCCCGGAAUG

1 no match

10271 UUCGGGGCUGGUCCGGGUUGAAGA

1 no match

10272 AUUCACAUCAAAGACCACAUGCAC

110273 CGCGGGCGGCCCCGGGUUCGUUUCCC

1 no match

10274 AAAAACCUGAAGAUGAUCCCUGAGUC

1 no match

10275 AAAUUCUCAACCUGGACGCUUCUUA
10276 GUAACAACGAAGAUGAUUCUGGCCCC

LINE

G2

tRNA

2 coding gene

CG17927-RA¦Mhc

1 transposon

LINE

INE-1

0 transposon

LINE

RR49783

CG30456-RB¦CG30456
CG40271-RA¦CG40271
Low̲complexity

F-element
Su(Ste)LTR

rooA
7SLRNA-RA
rRNA

LTR

Rt1c
CG2252-RA¦fs(1)hAT-chX-B
CG9821-RA¦CG9821

2 Su(Ste)

Su(Ste)0 transposon

LTR

Stalker2

1

1 transposon

LTR

3S18

1

1 transposon

LTR

invader410277 ACGUACUAAAACAAAAACCUCCG

1

0 transposon

LINE

Rt1b

10278 GUUCCCCGGAUAGUUUAGUUACGU

10 ncRNA

10279 AAAAGUGUCCAACAUGGCGAGUGA

1

2 transposon

10280 UAGCAUUGCGAUGGUCAGAAAGUGAU

1 no match

10281 GCUAAUACCGGAUGAUGACGUA

1 no match

10282 AUGGCUUUCUCAGUCGCUUCCCGGGA

1

1 ncRNA

10283 UACGUAAACAACCCCAGACUGACUU

1

2 transposon

LTR

Max

10284 GCAAAAAUAACUCCGAAUUAUGGCA

1

0 transposon

LINE

Cr1a

10285 GGAACGCCCGUCAUGAUCAUCGAUGA

1

0 coding gene

10286 AUACAAACAAAUAAAGAGUUUCCGA

1

0 no annotation

10287 CAAACCAAUCCCAACCAAACCCGUCAAU

1

1 transposon

10288 ACGAGAAGACCAGUUCGCUGGAGGCGGAG

1

2 coding gene

10289 CCCAGAUAUAAACGCUACGCUAGCCA

1

0 transposon

rRNA
LTR

opus

rRNA

CG32022-RA¦CG32022
LINE

G2
CG10542-RA¦Bre1

LTR

opus

10290 CGCCCCUGGACGACCCACGUACCUA

1 no match

10291 CAACCAGAGUUCCCAGUGCUUGG

1

0 transposon

LTR

DM88

10292 UGACAUCGAAUGGAGUGCCAGAACCCGU

1

0 transposon

LINER1-element10293 GGACGAGGCGCCGCCGCCCCCCCCAC

1 no match

10294 GAGACAAACAUGUUCGAGCUACAGC

1

0 transposon

Unknown

RR50960

10295 UGCUAGAAGACGAUUUUCGGGCCG

10 transposon

LINE

Cr1a

10296 UGUGCUAGAAGACGAUUUACGGGCCGA

1

0 transposon

DNA10297 GCUUAAUUCCCUGGGAAGAUGCCCUGUU

10 coding gene

10298 CAGCGUUUGACGUAGCAGCCCGG

1

0 transposon

10299 GCAAAAGUUGACCGAACUUGAUUAUUU

10 ncRNA

10300 AGAACGAUGACGAUCCCACGGCUGU

1

1 transposon

LTR

ninja-Dsim-like

10301 AAGAACAACAGUGCAGACGGCGCCCGA

1

1 transposon

DNA

H

10302 CCAGACGUAAUACUCCACUACCCGGAUA

1

2 transposon

LTR

HMS-Beagle

10303 GUGGCUUUGAGAGGCGCCGUAGUUUC

1

1 no annotation

10304 ACUCGGCUUGGUCCAGUCCUGGGAAUG

1

1 coding gene

10305 CAAGCCAAUCUGGACGUACGGAAUUCA

1

0 transposon

LINE

G2

10306 ACCCUGAACGCGCCCGAUCUCAUC

1 no match

10307 ACCGACGAAAUUUGCGUUCCAGCGAGA

1

0 transposon

LTR

3S18

10308 GCGUAAGCCUGCAUGGAGCUGCC

10 ncRNA

rRNA

10309 AGAACCUGAAACCGUAUGCGUUAC

1 no match

10310 GCUAAGUGGGAAAGGAUGUGGA

1 no match

10311 AUAAUAAUAAAUAAAAGGGUGACCGGC

1 no match

10312 CAAAGCUUUUGGGCUCCGGGGGA

10 ncRNA

rRNA

10313 GCCGAAAUGACCGAUAGACGAAUGGCC

1

0 no annotation

10314 AUUGCACUCCGGAUGUGCUGACCCCU

1 no match

10315 AAGAUGGCAAAGCUCUGCUGAAGAC

1

0 coding gene

CG2238-RA¦Ef2b

10316 GCCGAACUUGAGACCGCCCCUGGACA

1

0 Su(Ste)

Su(Ste)10317 UGUUUUCAUCGUUUAGACGGCUCGGGC

1 no match

10318 AACCCUGAGGCGUGAUGACGAGGCACU

1 no match

10319 CAACCAGAGAUCUAGAGGGCCCAUU

110320 UCUCUUAUCAUCCGAGCGAUACGCCUAC

1 no match

10321 GGGGAAAACAACGCAGUGGCAGACGC

1

0 transposon

10322 GUGAAUGAUAUGCACCGGAAGUAUA

10 Su(Ste)10323 ACGUCUGUGAUGCCCUUAGAUGU

11 ncRNA

10324 CGAGUAAUAUGAGCGCCCAGAGUGAAAA

1

1 transposon

LTR

opus

10325 GCGCUAUUGAUUCAUCCAGGGAA

1

0 transposon

LTR

ninja-Dsim-like10326 GUGAAUAAUAAAUAGCCGAGGAAAGU

1

0 transposon

LTR

diver210327 AAAAACCUUAAGAUGAUCCUGAGUC

1

2 transposon

LINE

Helena10328 CCCCUAUCCAAGAUACAACACACC

1

1 transposon

LINE

F

10329 AUAGUCAUUUUGAGAGUUCGCUAU

1

0 transposon

LINE

Cr1a

10330 CCAGUCAGUAGAGCACUACCGCCGGCC

10 repeattrf

10331 UGCAAACCCAAAAAGACAAUACACGAC

1

1 repeattrf

10332 CAGGGGGAUCUUUGAGUGAUGAAAUU

1 no match

10333 CAACUGGAGAGUUUGAUCCUGGCUCA

1 no match

10334 UGUUUCAUCGUUUAGACGGCUCGGGC

1 no match

10335 GCCUGAUGACCAUAGCAAGUUGGUACC

1 no match

10336 UGCAUUUCAAUCGGAAGAGUUCUCUGC

1

0 transposon

10337 GACUAGCUGGCCGAGUAUUUGAUAG

1

1 Su(Ste)10338 AACUGAAUAAACGAAAUGGAUGACC

1

1 transposon

LTR

invader410339 AAUACAUGCCGACGGGCGCUGACC

1 no match

10340 GGCGAGACGGGUGACAGCCCCGUACGG

1 no match

10341 CGACUCAGUAUCCCGUUUAUUUGGGG

10 transposon

LINE

Rt1b

10342 ACAACAAACAACAAAUACCCGCUG

1

1 transposon

LTR

GATE

10343 CGCAGAACCUACCAUCCCUUGACA

1 no match

10344 AUGCUCUCGAAUGUAUGCCCGAUAUU

1

1 transposon

LINER1-element10345 CGACAGAAUAGAGAGGGACCUCAA

1 no match

10346 CAGAUACCCGUUACUCAGCUAGU

1

0 transposon

LINE

INE-1

10347 UCGGACAAUUAUUUUUUUAUGUUGUGGC

1 no match

10348 CUCAUUCCGAACAUACACCGACA

1

0 transposon

LINE

Doc

10349 UUCGAGAAGCGUUUGAUCGAGUGUGC

1

1 transposon

LINE

BS3

10350 CCGAAGAACAAUUUUACCUACAAGACC

1

0 transposon

LINE

G6

10351 GACCACAUGGAAACCAAGGUCCCU

1 no match

10352 GAAGACGUUCAUUUCGGACAUGGGU

10 transposon

LTR

gypsy810353 ACCGACCCGACCCCUUUAUGUAAGGCC

1

0 transposon

LTR

ninja-Dsim-like10354 GUGAUCGUCUAGUGGUUAGGACCCCA

1

0 ncRNAtRNA

10355 CGAGAUCUUGCUGACGUGCGACC

10 coding gene

CG5276-RA¦CG5276

10356 UCCUCAACUGUGGAGGGGAUCCUCAA

1 no match

10357 CGCAAACCCAAAAUGACAAUGCACGAC

1

0 no annotation

10358 UAAACAGUACGUGAAACUGCUUA

10 ncRNA

10359 CAGCUCCUGCCGGUAGAACGUGGGCC

1 no match

10360 CUGUUUCAUCGUUAGACGGCUCGGGCGG

1

0 AT-chX

10361 UUAGAUACAAAGCUAGAUUGGUUGCAC

1

0 transposon

LINE

Cr1a

10362 GCCGAAGUCAUUGUGCGCCAGAGU

1

0 transposon

Simple̲repeat

I10363 AACGGACACAUAACGGAAUCGCUA

1

1 transposon

LTR

opus

10364 ACAGACUCGGAACGCCUCAUUGGU

10 coding gene10365 GUACCCGACGGCAAGACUCCUUC

1

0 transposon

LINE

G2

10366 GAGGAAACGAAAACCCAUUCCGGCAC

1 no match

10367 UACGACGAGAACGAGAUCAUCGU

1

2 transposon

LTR

frogger

10368 CACGCGGGCGGCCCGGGUUCGUUUCC

1

1 ncRNA

10369 GUCUUUGUAGAGGCGCCGUAGUUACCAC

1 no match

10370 UGGACCAAGGUGAAGCCUACGCGC

1

0 transposon

LTR

HMS-Beagle

10371 UGCGAGAUGGACCUUUAGAGCAC

1

0 transposon

LTR

GATE

10372 CUCAAUAAGAAUAGACACGAUUUUGA

1

0 transposon

LTR

Idefix1360
CG17991-RA¦CG17991

LINE

R1-element
rRNA

CG17673-RA¦Acp70A

2 no annotation
LINE

Doc4
Su(Ste)
rRNA

LINE

Circe
Su(Ste)rRNA
AT-chX-B

CG31359-RA¦Hsp70Bb

tRNA

10373 UGACGAGUAAUGGUCUUCGGGGCGU

10 coding gene10374 UAUUGGCAACCGAAAAUAUAAACGA

1

0 transposon

CG12717-RA¦CG12717

10375 GGUUCCCUCUACCUAGACGACGAGA

1

0 coding gene10376 CCGCGUCCUGGGGCUGAGCCAGUUUUGU

10 coding gene

10377 AAUUCUAGAGAACGAAAGCGAGGAC

1

0 transposon

LTR

flea

10378 UGAGUAACGCGUAUCUGAUAGUCG

1

0 transposon

LINE

INE-1

10379 AUAGGGAUGAUGAUACCGAUUAAAGG

1

1 no annotation

10380 GGUUGCGAGAGGUCCCGGGUUC

1

1 ncRNA

10381 GAGACCCGUCGCCGCGCUCUCCCCCCU

1 no match

10382 ACCGAGAGAAGACUUUUCACCCGAUGU

1 no match

10383 GACACCGGAACAUGCGGCUGCGAGU

1

2 transposon

10384 AAGUGGAGCCGUACCUGUUGGUU

10 ncRNA

10385 AGCGAAUACCUCCGCUUGUCCCAAG

1

0 transposon

10386 AUUCGUGUAUGAAAUGACCCGUCUAA

1

0 no annotation

10387 ACCCUUGAUAAACUGUUGACUUUCG

110388 GAGGUCGAGGUGGGUGGAUUGC

1 no match

10389 UCGCCCCGAACCCUUCUGGUGUGU
10390 GCGGAAAGAGAGCGAUUUUGGCCGU

Unknown

RR50960
CG14476-RA¦CG14476
CG17097-RC¦CG17097

tRNA

LTR

diver2rRNA

Simple̲repeat

I

1 transposon

LINE

Rt1b

1

1 transposon

LINEbaggins1

0 transposon

DNA10391 UGUGACUGAUCUAGAGUACAAUGU

1

0 transposon

LTR

DM88

10392 CAAUCCCAACCAAACCCGUCAAACCC

1

0 transposon

LINE

G2

10393 AGCUCGAUCAUGUGACUCCGGGUG

10 transposon

LINE

Doc2

10394 GGCGGGUGUUGACGCGAUGUGAUUUCU

1 no match

10395 CUGUAAGGGGAUCCUCAA

1

2 no annotation

10396 ACAAGCUGUGUACCCUACGGCAUA

12 transposon

LINE

G2

10397 UGGAACAAAUUGGCCUGAUUAGCGGA

1 no match

10398 CAAGCUAGACUAUGUAUCCCCAGG

1

1 transposon

LINE

Doc

10399 GGCGUUUUUCCCGUUGUCAUUAAGG

1 no match

10400 GAUCCUCACUGUGAGGGGAUCCUCAA

1 no match

10401 CAGGUGGGGAGUUUGGCUGGGGCAGCA

1 no match

10402 UGCAUUUUUAAGUUACCUGCAUCGAGG

1

0 transposon

DNA

pogo

10403 CUUGAUCUCGGUGUUCAGUACACACA

1

0 repeat10404 CUUUAACAAGGACCAAUUGGAGGGCAA

10 ncRNA

10405 GAACUCAAAAUUAUUCCUGAUGGCG

10 transposon

LTR

flea

10406 CAAGGGUGCACCAUCGACCGAUCCUGA

1 no match

10407 AGAGAACGCACCCGCUUGACCUUA

1

0 transposon

LINE

G2

10408 UCACCCUGAACGCGCCCGAUCUCGUC

1 no match

10409 ACCCUGAACACGCCCGAUCUCGU

1 no match

10410 UCGUUGAGCAGAACAGACAUGUCU

1

0 transposon

LTR

invader1

10411 AUGUUCGAACGAUCUUUUAACCCAGGU

10 transposon

LTR

invader410412 AUACAACUGAAAAAGACGCUAUAGU

1

0 transposon

LINE

RR49783

10413 ACGAGUAAUAUGAGCGCCCAGAGUGUA

1

2 transposon

LTR

opus

10414 AAAACAACUAACACCUACCUGAGAUG

1

1 transposon

LINE

TART

10415 UUAGAAGACACAUCAUACCCAGGAAG

1

0 transposon

LTR

Idefix10416 GAUGGAUACGAGUUCUUUGCCAACCGAC

1

0 coding gene

10417 GUCAAGGAUGCCAUACAGACGGUUGGGA

1 no match

10418 AAAACCUGAAGAUGAUCCUGAGUCGCAC

1

1 transposon

10419 CAUCUUCUUAACGCAGCUGCCGAAA

11 Su(Ste)

10420 CUGAGAGGACGACCAGCCACACUGGGA

1 no match

10421 ACCACCCUGACGCGCCCGAUCUCGU

1 no match

10422 AAAAGUUUACCGGAACGGUCUGGAAUGGCC

1 no match

10423 GCCUGCUGACGGGGCCCGAAAACACGA

1

0 transposon

LTR

opus

10424 UAAGCUCUCGAAUGUAUGCCCGAUA

1

1 transposon

LINER1-element10425 UAGUCGGUCCUACGUUCAAGGCGAA

1

1 ncRNArRNA

10426 UCCUCGAUAGUAUAGUGGUUAGUAUCC

10 ncRNAtRNA

10427 CUAGGACUACCAUGGUUGCAACGGGU

10 ncRNA

10428 UACGAUACGGAAGAUGGCCCAAAAA

1

0 transposon

10429 UGUUUCAUCGUUAGACGGUCUCGGGCG

1 no match

10430 UCCUCGGAGGCGUGGGUUCGUAUCCC

1

1 ncRNA

10431 UUCCAAAGUGUAAAGGCCCAUAUGU

1

0 transposon10432 UUAAACGAGUGUUAUUGUGGGCCGGUA

10 ncRNA

10433 CACGUACAACGGGGCUUGAAGC

1

0 transposon

10434 ACCGAAUUAAUCGCGAGCUGCAAGACA

1 no match

10435 UGCCAAAAGAUAAAACGUUUACGAAA

1 no match

10436 AUAUACGUUCGUCGAUGCCCGUGGCA

10 coding gene10437 UGCACAUUAAGUUUUGAUCGCCGAAA

1

0 transposon

10438 GCGGAAUCAGCGGGGAAAGAAGA

1 no match

10439 CACUGGAUGGUUGCGGGGGUCGCG

1 no match

10440 CAGGCAAGGUGUUUAAGUGGUUGAGC

1 no match

10441 GGUUUUGUAAACCAGGGGUCGUGA

110442 ACCACCCUGAACGCGCCCGAUCUACGUC

1 no match

10443 CACCCGAAGGUUCUUAUCGUGCCA

1

0 coding gene10444 UUUGAAUUGAUCGACGUACUCUUUG

1

0 transposon

10445 GGCGAGCGAAAAGAAAACAGUUCAGCA

1

0 ncRNA

10446 ACCAACGGGAUGCCUCAUACUCGAG

1

1 transposon

LTR

micropia10447 AGAACUAUUAGAGUACGAUUUCGAGG

1

0 transposon

LTR

diver210448 UAGGAAACUAAAUCAUAAGACAACCGA

1

0 transposon

LTR

gypsy410449 AAGGAAAUGCUCGCGAUAAUUUGGUC

10 transposon

LTR

opus

10450 CAGGACCAUAUCCGAAGACGCGGCG

10 transposon

LINE

Rt1b

10451 UGCCGAUGACAACGCCUUCCUAGCCUCC

1

1 transposon

LINE

G

10452 CCCAAUAAAAGCCACGGCACUCCU

1

0 transposon

LINE

Doc

10453 UAGACUAUGAAGAGACAUUUGCUC

1

0 transposon

LINE

Cr1a

10454 AAUCUCAACUGUGAGGGGAUCCUCAA

1 no match

10455 UACGGGAGGCAGCAGUGGGGAA

1 no match

1360

LSU-rRNA̲DmerRNA

CG10930-RA¦PpY-55A
LINE

HelenaSu(Ste)

rRNA
LINE

F
tRNA

LTR

flea
rRNA

LINE

Doc4

CG7713-RA¦CG7713
LTR

1 ncRNA

invader1

tRNA
CG7728-RA¦CG7728
LTR

Dm88
rRNA

10456 GGUGCGCAAUUCCGUGGGCGAGGA

110457 AAGGCUUUUCCCGUAGUUGAUUUUG

1 no match

0 coding gene

CG9285-RA¦Dip-B

10458 GGCGGCGACGUCGGCUACCCACCCGAC

1 no match

10459 CAACCAUCCCAACCAAACCCGUCAA

1 no match

10460 UACACACCGCCCGUCGCUACUACCGAU
10461 UCAAGACCGAAAAGAACGAUGGCC

10 ncRNArRNA

1

0 coding gene10462 AAACAGACUUUGAUCCGGAGAUGUCU

1 no match

CG4049-RA¦CG4049

10463 CGAGGCCAAGUUUGCGUUGAAGAA

1

0 coding gene10464 ACCUAUAAUAGACGGUGACUUAACGAU

1

0 transposon

LTR

gypsy1210465 AAAACCUGAAGAUGAUCCUGAGUG

1

1 transposon

LINE

Helena10466 CGAGCGGAAGGACAUCAUGGACACC

1

0 coding gene

10467 UUUGUCAAUAAACAAGAUUCCCGGA

1

1 transposon

LTR

micropia10468 CUGACAAACAAGUAGGCAAUGAAA

1

0 transposon

Simple̲repeat

I10469 GCCCGAAUGAUAACCAAGUUUCUAA

1

1 transposon

DNA

BS

10470 CCGAAACACACUCCAUUCCAGCGAUA

1

2 transposon

LTR

GATE

10471 UCACCAAGCGUUGGAUUGUUCACCCG

1

1 ncRNA

10472 GGCGGCGUCCGGUGAGUUCUCGCUGGCCCU

1 no match

10473 AAAACCUUCGUAGACGACCUGCUUC

1 no match

10474 GGAUCCUCAACUUGAGGGGAUCCUCUAA

1 no match

10475 CAAGAUAUGACCGAAACAAAGACAC

1

1 transposon

10476 UCCGAUUUCAAGUACAAGACGAACC

1

0 repeat10477 CCAAUGAAAACUACACCCAGACGGA

1 no match

10478 GACAAUCGAACGAAGUCAUAGAACAUA

110479 GAAGGCGUGAAACCGUUAAGAGGU

1 no match

10480 GCGAUCCACUGAAGCUUAUCCUUUGCU

10 ncRNA

10481 UACCAAUCACGCCGUUUGAACCCU

1

0 transposon

LINE

X

10482 ACAACUCAAGUCCCACCUUCCCA

1

2 transposon

LINE

G2

10483 UUGUUCCCCGGAUAGUUUAGUUACGUA

10 ncRNA

10484 AUCCUCGAGAAUGGAAAAAACCCCAA

1

0 transposon

LTR

Idefix10485 AGAGAUAGAAAAAGGCGACAACGA

1

0 transposon

LTR

Idefix10486 ACAAACACAGUUCCCGAAUGAGA

1

1 transposon

LINE

Cr1a

10487 UUCCCAACCAACUAAAACCCGUAGA

1

0 coding gene

10488 UGGAGAGUUAUGCGAUGAGUGGA

1

1 transposon

10489 UUGGGCUCCGGGGGAAGUAUGGU

10 ncRNA

10490 UCUCAUCGUCGUAGACAAGCCCG

1 no match

10491 UACAAUGAUCUGAUCGGGUUUUU

110492 CGACUCGUUUUAAAUUUCGCAACAAGC

1 no match

10493 CCAUCCUAAAACUGAUACACAGCC

10 Su(Ste)

10494 AGUACUUCAGCCAGACACUGGACGU

10 Su(Ste)

10495 CGAACAACGAGACCACGUGUUGCAUU

1

0 transposon

LTR

HMS-Beagle

10496 CAAAACCAGAACCAACGGACGUGGAC

1

0 transposon

LTR

HMS-Beagle

10497 GCGAGAUAGAGAUAUUCCCGUUAA

1

0 transposon

LTR

invader1

10498 UCGAGAUGGAGAGGCUUCAGAGU

1

0 transposon

LTR

ninja-Dsim-like

10499 GGCACUGGGGAGUUCUCUUCCACCUCGA

1

0 no annotation

10500 AGCCCGUGGACGGUGUCGAGGCCGGUGGC

1 no match

10501 GUCUCGACGAAUACCGAUCCAGUGG

1 no match

10502 AAGCACAAGUACGAGUUCAUCCUGGAU

1

1 coding gene10503 UCCGAUCAGACGAGAUGGCCAACAG

1

0 transposon

LINE

Rt1b

10504 UGAAGUAAAAGAACCAACCACGGGA

1

0 transposon

LTR

diver210505 GACUACAUAUGGUUGAGGGUUGUA

10 ncRNA

10506 GCGGAAUCAGCGGGGAAAGAAGAC

1 no match

10507 AAAAACCUGAAGAUGAUCCGGAGUCGC

110508 CGACUAGGGAUCGGGUGGUGUUUUUUU

1 no match

10509 AAGUCUUCCGUCGCAUCUCGCAGCU

1

0 coding gene

CG33715-RB¦Msp-300

10510 GAACGUACCGGCAAUCUGACUGUGG

1

1 coding gene

CG8430-RA¦Got1

10511 AUAAUCUGAAGGUCGAGAGUUCG

1

2 ncRNA

10512 AUAAGCAAAAUGCAGAACACCGG

10 transposon

10513 CAACGCCUCGAAAGCGAUUGCUGCAGAU

1

0 coding gene10514 ACCCUGAACGCGCCCGAGUCUCGUC

1 no match

10515 GGAUCUCAACUGUGAGGGUAUCCUCAA

1 no match

10516 CAAAAAACCCAGUGCUCGAAGCAGCGG

110517 CAACCGAGAUUCCCUUAGUAGUGGC

1 no match

10518 AUGGCUCUCUGUCGCUUCCCGGGA

1 no match

10519 GAGAGGCGCCGUAGUUACCACCCCACC

1

0 no annotation

10520 UCUCAUCGUCGUAGAGCAAGCCCGA

1

1 Su(Ste)10521 AUGAGAUAUGCUAGCAGACUGGAGAU

1

1 transposon

LINE10522 UAGACCAGCGACGACACCUUUGGA

1

0 transposon

LTR

10523 GCCAAUGAAAACCACACCCAAACCAGA

1

0 transposon

LTR

McClintock

10524 GACCUAGAUAUACGAUUCAUUAAGGC

1

0 transposon

LINE

Circe

10525 UAGAUCUUCACCGUUGACUUGGCC

10 Su(Ste)10526 AUCUGUGGGAUUAUGACUGAACGCCU

1 no match

10527 AGAAGACAUACCUGAGCGAACAGACC

1

2 transposon

10528 GAUCGCCCAUCUCAAGUCUCUGCUGC

1

0 coding gene10529 AGACGACAUAAUUGUCUUUCGACAUCC

1 no match

10530 UUCCGGAGUGUUGAUCUGAGCCUC

110531 GGGGAGUCCGAAGUGGUCUUAGUACAA

1 no match

10532 CUUGAACAUAAACGAAGACCCACAAA
10533 CCGGUGGAGUUCUUAUAUGUGAU
10534 UGCCUGGGCCUCAGCAAUGUGUGGG

1 no match

10535 CCAGGUCCGAACAUAAGUGUGUAAGA

110536 GGGCUCCGGGGGGAAGUAUGGUUGC

1 no match

10537 CUGUCUACGAAAACAAUCGCAGGGUU

1 no match

10538 GGAUCCUCAACUUAGGGGAUCCUCAA

1 no match

1 transposon

0 transposon

2 transposon

0 transposon

CG4599-RA¦Tpr2

CG9130-RA¦CG9130

rRNA

DNA

1360
RSP

LTR

gypsy8rRNA

rRNA

CG10377-RA¦Hrb27C
LTR

GATE
rRNA

LINE

Cr1a
Su(Ste)Su(Ste)CG12261-RA¦mRpS22

rRNA
LINE

Helena

tRNA
LINE

Doc4
CG2841-RA¦ptr

LINE

G6

Su(Ste)G2297

Su(Ste)LTR

McClintock
CG6030-RA¦ATPsyn-d

0 transposon

LTR

GATE

1

1 transposon

LTR

INE-1

1

0 ncRNArRNA

0 ncRNArRNA

10539 CCCCUGGACGACCCACGUCCCUAUGCU

1 no match

10540 ACAUCCCAGGGGGUAGCGACUGUUU

1 no match

10541 ACAUUCAUAACCGAGCGACUGUUCCA

1

0 transposon

10542 UUCUUACAUGUGGUAUUUACGAAGU

1

0 no annotation

10543 CGCUGAUCUCGGACAAGUUUGGUGC

10 coding gene

CG6186-RA¦Tsf1

10544 UUCAAGGUUGCCCCAGGAUGCUGUGCCAU

1

1 repeattrf

10545 UGAAAUCCGAGCUAAUCCGAGCACCA

1 no match

10546 CUGCAUCCGAUUGGGCCUUCCGA

110547 UUGUGAAGCAAUUCACCAAGCGUUG

1 no match

10548 UACGACGAGAACGAGAUCAGCGCGAUU

110549 CAUCAAGCCUGAGAGGUGAUGCGUAGUCC

1 no match

10550 GUGAUGUCAACGUUUGAUCCCCUAGGA

110551 UAACGCGUGAAGUUGACCGCCUGGGG

1 no match

10552 CGGACAGAGACGGCGCAUUUUCCAG
10553 CGCAGCGCUCGAGAGGUGUCCG

LTR

GATE

0 transposon

DNAH

0 transposon

LTR

frogger

1 transposon

LTR

ninja-Dsim-like

1

0 transposon

LTR

McClintock

1

0 coding gene10554 CAGUCCGAAACACACCCCCCGAUAAU

1

1 no annotation

10555 CGCAGAGUACGGGGCUUACUGAAG

1

0 transposon

LINE10556 UGGCUCCGGUGCGCUUGUGACGGCCCG

1 no match

10557 CAGAUACCAUCUUCCUACGAACCGA

1

0 transposon

LTR

10558 ACCCUGAACGCGCCGGAUCUCGU

1 no match

10559 AACUCCAGCAGAGACCGUACCCGA

1 no match

10560 GGCUCUCUCAGUCGCUUCCCGGAAAC

1

0 ncRNArRNA

10561 AAAGGAAUUGACGGAAGGGCACCA

1

0 ncRNArRNA

10562 GGACGAGGCGCCGCCGCCCCCCCCCAC

1 no match

10563 GGCGAUGAAAAGAAGUAGUACGGCA

1

1 repeat10564 GCGCGGGACCCUUCACAAUUGCUUCG

1

0 transposon

10565 UGAAGUGGGGAAGGGUUCCAUGGUAAC

1 no match

10566 AUAGAUGACUUGAGUUCGUGUACAUUA

1

0 ncRNA

snoRNA

10567 GACACAAUCGAUGACGAUCGUCUGCGC

10 coding gene

CG5119-RA¦pAbp

10568 GAGAGUGAUGCCGAGUAUAAA

1

0 repeat10569 CACCACAAGGGAACAUUGAGUCCGGU

1

0 transposon

10570 GCAAAGUGAACACAUCGCGAAGCA

1

2 coding gene

CG18743-RA¦Hsp70Ab

10571 UACGAAUUCAACGAGGUAUGCCAU

1

0 repeat

SAR̲DM

10572 UCCGAGGCCCUGUAAUUGGAAUGAGUA

10 ncRNArRNA

10573 AUGCGAGAGGCCCUGGGUUCAUUUCCCA

1 no match

10574 CUGCCCUUUGAUUGCAUUCCGAAUGA

1

0 coding gene

CG2995-RA¦G9a

10575 UGGAGCACUCGAAGAAGACCCACGCCC

1

0 coding gene10576 CGACUCAGUAUCCCGUUUAUUUG

1

0 transposon

10577 UCCGAUUUCAAGUACCAGGCGAACAGA

1

0 repeat10578 GCGGUGGGCUGAAUCCUUUGCAGACGA

1 no match

10579 CCGACAAACAUCCAACAAACACAACA

1

0 transposon

LINE

Doc

10580 AAGUACGAAAUUUCCAUUCCUUUUAA

10 transposon

LTR

GATE

10581 AAAUUCCGGCGCCAGGAUGUGGAUGA

1 no match

10582 AUGAAAACGAAGGUGACCUUUUUGGG

10 transposon

LTR

flea

10583 CUACUUAGUUCCCCGGACUAGUUUAGUUACG

1 no match

10584 GGAUGGGAGACCGCCUGGGAAUACCG

1 no match

10585 CACGAAUGGCGUAACGAUCUCCCCGCU

1 no match

10586 GCCGAUCACAGGUCCGCACCUACGC

1

0 transposon

LINER1-element

10587 AAAAUACAAAGACGACGGCCCACC

1

1 transposon

LTR

springer

10588 CUGGGAAGGUGGGACUUGAGUUU

1

0 transposon

LINE

G2

10589 GUUCGAUUCCGGAGAGGGAGCCUGA

1

0 ncRNA

10590 CUUCGAUUCCGUAGAAGACACAUUCGA

1 no match

10591 AAAAAACCUGAAGAUGAUCCUGAGUCG

1

2 transposon

10592 GUGAACUACAUCCCAACGACCGAGAUGC

1

0 no annotation

10593 GAAGAAAGGAGAUGCGUUGCCAAGAGU

110594 UCGGAUCCUACGCCGCGACGACGCCGA

110595 UACAUACGAAAAGCGAGUUGACGUGU

1 no match

10596 GUCAAGUGCGGCGAUGUGGUGACCCUGC

1

0 coding gene

CG4750-RA¦loopin-1

10597 GAAUAGAGAGUUAAACAGUACGUGAAA

1

0 ncRNArRNA

10598 CUAACAUAUCUGCGAGUAUUUGGG

1 no match

10599 GACAAGCUGACCCGCAUCACGGGACAAA

1 no match

10600 UAUAUUUUGAUGGAGUACGGAGUGU

10 transposon

10601 AUAAGUGGGAGAUAUUAGACCUCGGU

10 repeat

LSU-rRNA̲Dme

10602 ACUACAUUCAGGACCCGUUCAACCGGA

1

0 coding gene

CG40635-RA¦CG40635

10603 UACGAAGGGGGCUAGCGUUGCUCGGA

1 no match

10604 CCGUCUCCGCCCCCCGGCCCCGCG

1 no match

10605 AAGGAGCACCAUCGACCGGCCCU

1 no match

10606 AACCGAAUUAAUCGCGAGGCUGCAA

1

0 transposon

LTR

mdg3

10607 AACCAAGAUUAUCAACCCGUGUUG

12 transposon

LINE

Cr1a

10608 CAAACUGAAUAAACGAAAUGGAUGACA

1

0 transposon

LTR

invader4

10609 GGGAUGAAAGGAUCCUCAA

1

2 no annotation

10610 CUUGAGACCGCCCCUGGACGACCCACGA

1

0 no annotation

10611 AACUGGAACGUACCUUGAGCAUAU

1

0 ncRNA

10612 GCCGGGGCGGGUUCCUGAGGGGGUCCU

1 no match

10613 GGAAUAAGAACACGUUGACGACGAA

1

0 transposon

LTR

HMS-Beagle

10614 UUUUCAAGAAAAGAUGCCCGAACGAC

1

0 transposon

LINE

RR4978310615 ACCAUCACGAUUGGCGAAGACCAAGC

1

0 transposon

LTR

G4

10616 UACUGACGAAUUUAGUUACAAGCAGA

1

0 no annotation

10617 CAUAGAGCAAAAGGGCAAAUGCUGA

1

0 ncRNArRNA

10618 GUUAUGGUUCCUUAGAUCGUUAAC

1

0 ncRNA

rRNA

10619 ACCACCCUGAACGCGCCCGAUCUCGC

1 no match

10620 AGAGACUAAAUCAACAUGGCUCAC

1

0 no annotation

10621 AAACUGAUAGACAGAAGGACGGAG

1

1 Su(Ste)CG6831-RA¦rhea
baggins
297

trf
LINE

TART

trf
LINE

Cr1a

CG31546-RA¦CG31546
LINE

Rt1b
RSP

rRNA
LINE

Helena0 transposon

LTR

diver20 transposon

LTR

ninja-Dsim-likeLTR

gypsy12rRNA

Su(Ste)10622 UCGUGUUGGACGAGAUUACAUUAAGA

1

0 ncRNA

10623 GUUGCAAUUAAACAGAUUCCGCAGUU

1

1 Su(Ste)

Hsromega-RC

10624 CAGAUACCCGUUACUCAGCUAGUAUAA

1

0 transposon

LINE

INE-1

10625 ACCAAGAUCAUCAAACCCGUGUUAU

1

0 transposon

LINE

Cr1a

10626 GCGACGACAACAAAGAAGACUGACAC

1

1 coding gene10627 GGCAAAACACAUCCCGGGAAAUGAGC

1 no match

10628 CAAACCAAUCCCAACCAAACCCGUUU

1

2 transposon

10629 UACACACUCAUCAACCAAAGGACGUUA

1

2 no annotation

10630 CCCAGCUCGGGGAGGUAGUGACGGAA

1

1 ncRNA

10631 GCACACAGAGGAGAGCAGAUGAAGCA

1 no match

10632 UUUCACGAAACUGGAACGGGAUUAU

110633 GGGUUCCGGGGGGAUAUGGUUGC

1 no match

10634 CACUGAAAUCCAAAAAGACAUGCCCGC

110635 UUUGCAAAAAACGGAGCGAUAGAGC

1 no match

10636 AACAUUAACAUCCGCUGCCGAAUC

1

0 transposon

LTR

Quasimodo

10637 CAGGAAUCAACUGCAUGACUCUCGC

1

0 transposon

LTR

Quasimodo

10638 GACGUUAAUGAAGAUGCCGUGGUGU

1

1 coding gene

pseudogene

10639 GGGUACGGCCAUCCAGUCGAAGCAGCC

1

0 coding gene

CG6773-RA¦sec13

10640 GCCCCCAUCGUCUAGAGGCCUAGGACAUCU

1 no match

10641 AUCGAAUGGAGUGCCAGAACCCGUUAU

1

2 transposon

10642 GCUUUAAUCACGAGCAAUGCAGU

1

1 no annotation

10643 UGCUCUCGAAUGUAUGCCCGAUAUAAC

1

2 transposon

10644 AAAUCCUUGAUAUGACGGACGAG

1

0 no annotation

10645 UCAAGCCAAAGAGGGAGCCCGGA

1

0 transposon

10646 CAUCUUCUUAACGCAGCUGCCGAACUU

1

0 Su(Ste)10647 AUGAGAUAUGCUAGCAGACUGGAG

1

0 transposon

LINE

G2

10648 ACUAACGUACAAAUCGAGCAACUCGUC

1

0 transposon

LINE

F

10649 GCAUUCAAUACAGCGAGAUGGCCCAAC

1

0 transposon

LINE

Rt1a

10650 AAGGAGUCUAAUACGUGCGCGAGUC

1 no match

10651 CCGGGGCGUUCUAUAUAGUUAUGUAU

10 ncRNA

10652 UGGCUCUCCCAGUCGCUUCCCGGGA

1

1 ncRNA

10653 CCAGACGUGAUACUCCACUACCCAG

1

0 transposon

LTR

HMS-Beagle2265

10654 UCAUUUCCCGGGAUGUUGUUGGGUCC

1

0 transposon

LINEbaggins

10655 UCUGGAGAGCUUCUUCACUGCCACACG

1 no match

10656 ACCACCUUGAACGCGCCCGAUCUCUUC

1 no match

10657 ACUCGCCGAAUUCCCGGGGCCGAGGGAGC

1 no match

10658 CCGUCACAGAGGGCAACCUACGGGGCA

1

0 transposon

LINER1-element

10659 GAGACCCGUCGCCGCGCUCUCCCCCC

1 no match

10660 AAAACCUGAAGACGAUCCUGAGUAU

1 no match

10661 CGUUGCGUCGCGGUGCAUGGAGCA

1 no match

10662 CUGAGAAGACGGUCGAACUUGACU

1 no match

10663 UUCGAGAACAACGAUACUGUUCGGC

1 no match

10664 AAAACCUGAAGAUGAUCCUGGGUCGC

1

1 transposon

LINE

Helena10665 ACCAAAAUCAUCAAACCCGUGUUA

10 transposon

LINE

Cr1a

10666 GUUGAAAACUUUAACCAAUACCCCGC

10 ncRNA

10667 UGCAAUCUCACCCCCCACCUCCCCG

1

0 transposon

LINE

S

10668 CUGCCUACAAUACAGAUACCCACU

1

1 transposon

LINE

Rt1b

10669 ACCAAUAAAACGAUUAAGACCAGCUAAA

1

0 transposon

LTR

McClintock

10670 AACCCAAGAUCAUCAACCCGUGUUAUUC

1

1 transposon

LINE

Cr1a

10671 GCCAAUUGCAUUAGACGAGACGGCCC

1

1 transposon

LTR

opus

10672 AGAACUUUAAAUUAGCCGACCCCGAUU

1

0 transposon

DNA

HB

10673 CGCCCCUGGACAACCCACUGCCUUGA

1 no match

10674 AAAAGAGGAGAAGGUGGCUUUGAGA

110675 CGGGGCGUUCCUUCGGGACCGAGUCACA

1 no match

10676 CCAAAGCUUUUGGGCUCCGGGGGAAGU

1

0 ncRNA

10677 AAUCGCUCGAUGUCGUGAGGUGAC

1

0 no annotation

10678 CGAGAUGUUCAACUACACGGACUCGCC

1

1 transposon

10679 AUGGGGCGAAGCUACCAUCUGUGGGAUU

1 no match

10680 UUGUACACACCGCCCGUCGCUACUAC

1

0 ncRNArRNA

10681 UCCUGAAAGUAGUUGGUGGGCACGUG

10 Su(Ste)

Su(Ste)10682 AUGCGAAAUUGGCCCAAUCUGA

1 no match

10683 CAGUCGCGAAAUAGGUAUCCCCGAGU

110684 GAAAGCACCGUUUCCCGUCCGAUC

1 no match

10685 AAGUGACAGACCGAAUCGCAAUUCC

110686 CGUUGCCAUCGUUGGGCCCCCGGUUC

1 no match

10687 AAGGACAAAGCAGGCUGCACGAAA

110688 GUAUCCUCAACUGUGAGGGGGAUCCUCAA

1 no match

10689 GGUGAGCAUACGGUUACUGGAGU

110690 CAAAACAAAAGUACACUGUGGCGAGCC

1 no match

10691 UUGAAGAGCAAGAACCGGAGUCGU

110692 CACAGAGUACGGGGCUUACUAAAAAA

1 no match

10693 AGCAAACCGUGUUCUACCUCGAUGACC

1

0 coding gene10694 ACCCGUCAAACCCCACCUGAAGAUCC

1

0 transposon

LINE

G2

10695 CUGUAAUUCAAGAGGACACAAAGC

1

0 transposon

Unknown

RR50960

10696 CCAUGGGAGUUGGUCUUACCCGACG

1 no match

10697 AACUUAACUUGACCGCUCUGACCA

1 no match

10698 CGACAUAGUACAGCGAACACAGU

1

0 transposon

LINE

Doc3

10699 UUCAGAAUAAUGUGAUUUGUCUUGAGU

10 transposon

LINE

Cr1a

10700 ACUGCCAACAGGCCCCGCACGAUAAGA

1

0 no annotation

10701 GGAUCCUCAACUUGAGGGAUCCUCUAA

1 no match

10702 CUGGAUAAUAGCCAAUCCCUAAGACGCC

1

0 transposon

LINE

G2

10703 GCGCAUGAAUGGAUUAACGAGAUU

10 ncRNA

10704 AGAGACGAGAACGCGUAUAAGUGUGCGU

10 transposon

Su(Ste)

CG31224-RA¦CG31224
LINE

G2
rRNA

0 no annotation
1 coding gene

CG14967-RA¦CG14967

LINE

R1-element

LINE

R1-element

LTR

flea
Su(Ste)

rRNA
rRNA

snRNA

1 no annotation
rRNA
LTR

3S18

2 transposon

LTR

diver20 transposon

LTR

Quasimodo

2 transposon

LTR

micropia

0 transposon

LINER1-element

0 transposon

LTR

blood
CG6554-RA¦Art1

rRNA
LINE

Cr1a

10705 GGCACAAUUACCAGAAGAUGUUGA

1

0 transposon

LTR

roo

10706 GAGAUAUUGAGCGACUUUCCCCGUAGC

1

0 transposon

LTR

3S18

10707 GUGGGUGGUGGUGCAUGGCCGUUCU

1

1 ncRNA

10708 UAGAACAACUACACCGAGUGGUCGAG

1

0 transposon

10709 GGCGCGGGUAACCCGUUGAACCCCAUUC

1 no match

10710 AACGAGCGGAGUGAACCUAGUGAAC

1

0 no annotation

10711 CGAACUUGAGACCGCCCCUGGACGA

1

0 Su(Ste)

Su(Ste)10712 CAGGCCCACCUGGUUGAACGUGUCCUG

1

1 Su(Ste)

Su(Ste)10713 AAAGCGAAUGAUUAGAGGCCUUAGGGU

10 ncRNArRNA

10714 UACAAUGAUCUGAUCGGGUUUUUUCU

1 no match

10715 UUAACAACGAUGAUGAUUCUGGCCCA

110716 GCGACCUGGAGCGAAUCCCCAAAAGCC

1 no match

10717 AUCAUCAACGAGCCCACGGCGGCCGUCC

1 no match

10718 UUUAACCAAAGACCCUAGAAUAACGA
10719 ACGUUGCAAGACAGGGCGGAAUGGC

rRNA
LINE

BS3

0 transposon

LTR

Max

1

2 transposon

LINE

Cr1a

1

0 no annotation

10720 GAUAGAGAGAACAUACGAAACACC

1

0 transposon

LTR

flea

10721 GCCGAAUUAAUCGCGAGGCUGCAAGA

1

0 transposon

LTR

mdg3

10722 AAACCAACCGGGAUUGCCUUAGU

1 no match

10723 AAAAACCUAGAAGAUGAUCCUGAGUCGCA

1 no match

10724 UCCUGACCGCGAAAACCCGGGUAGCA

1

0 transposon

LTR

GATE

10725 UCCAAUUCAAGGACAUUGCCAGGU

10 ncRNA

10726 UUCCGGAGAGGGAGCCUGAGAAACGGCUA

10 ncRNA

10727 CAGCAAACCAAUCCCAACCAAACCCG

1

0 transposon

LINE

G2

10728 UGGUGUCACCAGCCCAAUCCGCGU

10 transposon

LTR

DM88

10729 AAAGGCGAGAUAGAUCCACGGAUCGGUC

10 transposon

LTR

flea

10730 GGGAGACAGCGACGAAGAGGAUGAGUU

1

1 coding gene

CG10198-RA¦Nup98

10731 CGGCGGCAAUGGCACAGCACCCUGGGG

11 repeattrf

10732 CGGCGAUGCGGUGGUGCAGUCCGA

1 no match

10733 CGACACCAUCCCUACCUCCAGCACCC

110734 GAUCCUCAACUUUGAGGGGAUCCUCAA

1 no match

10735 UCAGACUAAAAACGUGUUAGUAAA

1 no match

10736 CUGGAGAAUAACCGAUGGACCAAUGC
10737 AUUCCGAAAAUGCGAGUUCCUCAACC
10738 CAUAGUCAUGCGAGGCGAACCGGGU

1 no match

10739 UAGCUAAUUAACACAGUCCCGGGGCG

11 ncRNA

10740 UUCGAUUUCAAGUACCAGGCGAACG

1

1 repeat10741 CACAUCAACAGAAAGCGUAUCCAGGCCC

10 transposon

LINE

G2

10742 CACACGGCUAGAUCCUGCUAUACGCAAGG

1

0 transposon

LTR

ninja-Dsim-like10743 GUUCCUCGAGAACAAAGGCAACGAG

1 no match

10744 UGAGACCGCCCCUGGACGACCCAC

1

0 Su(Ste)

Su(Ste)10745 UGCGUUAAGAAAAUGUCCGGACAGC

10 Su(Ste)

Su(Ste)10746 GCAUUCGAGACCCAACGGCACGUGAUUA

1 no match

10747 GGCUCCGGGGGGAAGUAUGGUUGC

1 no match

10748 AACCCUGACCAACAGCUAAGGCCCC

1 no match

10749 AUCCUCAAGAACCCUUUGAAUUCCGA

1

0 transposon

LINE

Doc

10750 AUCAAACAGAAAAUGACGACCCAGA

1

0 transposon

LTR

roo

10751 UUGAAAAUCCGGGGGAGAGGGUGUAAA

1 no match

10752 AGAGCCGUCUAACGAUGAAACAAAGAUC

1

1 no annotation

10753 GGUGAAGAGUCUCUAGUCGAUA

10 ncRNA

10754 CCCGUAGAAAACCUUUGGAGUGCUU

11 transposon

LTR

HMS-Beagle

10755 AGCCCCGAUAAACGCAUUCAAGAAUC

1

0 transposon

LTR

HMS-Beagle

10756 AAAAGCUCGGCCUAUCGAUCCUUU

10 ncRNArRNA

10757 CCAGGCCCGUAUAACGUUAAUGA

1

0 ncRNArRNA

10758 CCGUUCUUAGUUCGUGGAGUGAUUU

10 ncRNArRNA

10759 CUGUGAACGAGUGAACUGGCAAC

1

0 Su(Ste)

10760 UGGAAUGUUUUCGUCCCACCCAAGC

1

0 transposon

10761 CCAUCCUAAAACUGAUAGACAGCUGGAC

1

1 Su(Ste)10762 UCAACCAACAUCUGCACAUUGUG

10 transposon

10763 AGGGACAUUAUUGUGGAAAAAUGUUAAA

1 no match

10764 ACGUGAGCUGGGUUUAGACCGUCG

110765 UCCGAACGUACCACGGUGCCCCCAGUGA

1 no match

10766 UGUAGGUGUACUGACCCAGUCGGA

110767 UCAAGAAUAACAGGACCAUCCAGAGU

1 no match

10768 GGGAAACGGGGCGCGGCCGGAAAGG

1 no match

10769 GAGGUCAAGCCCUAUGUCCUGGACGAUC

1

0 coding gene

CG5735-RA¦orb2

10770 GUCAGGAUGGCCGAGCGGUCAAA

1

1 ncRNAtRNA

10771 UCCGUGGCAGAAAAACGACUACC

1

0 coding gene

CG11621-RA¦Pi3K68D

10772 CAGGUCACCAAGGCCGCCGAGAA

1

1 coding gene10773 ACUGUGCCCAAGUUAUUUCCGGAUA

1

1 transposon

LTR

micropia10774 GGACCCUCAACUGUGAGGGGGAUCCUCAA

1 no match

10775 CAUUCAUCAAGCGGUGGAUCCUGCGUUU

1 no match

10776 CGGGACAUGGUGUCGGACCGACUUGG

1

0 transposon

Simple̲repeat

I10777 CAAACAGUUAAUCUUGUCAUUCGAGA

1

1 transposon

LTR

invader310778 GUGCGAACGGGAUCUUGAUCGACUU

1 no match

10779 UCAGAGACUUUGGUGGCCAACAA

1

0 coding gene

10780 GCCGACGAGAUGCCCAGGGCGUGCA

1

0 transposon

LTR

ninja-Dsim-like10781 GGGUUCGGAUCCCACCGCUGUCACCA

1 no match

10782 AUCAAACGCUGAUAAGGCACCGGG

1

0 transposon

LTR

qbert

10783 ACGGGUAACGGGGAAUCAGGGUUCGAU

1

0 ncRNA

10784 AACUAUAUAAUGAAAAGGGAAUGCC

1

0 transposon

10785 GGAGCACGACUAGAUUGCCUUUAG

1

0 no annotation

10786 UUAGACCUCGGAGAAUUUAGUAG

1 no match

10787 AAACCCUCUAAUUCGGCCCGAACCC

1

rRNA
rRNA

0 transposon

LINE

G2

1

0 transposon

LTR

diver

1

0 transposon

LTR

Rt1c
rRNA
RSP

rRNA

Su(Ste)LTR

Su(Ste)LINE

0 ncRNA
0 transposon

1 transposon

GATE
Circe
rRNA

LINE

baggins

CG8280-RA¦Ef1alpha48D

pseudogene

rRNA
LTR

micropiaLINEbaggins10788 UGGAGCCGUACCUGUUGGUUUGUCCCAU

1

0 ncRNA

10789 CAAUGUGAUUUCUGCCCAGUGCUCUGA

1

0 ncRNArRNA

10790 AAACCUGAAGAUGAUCCUGAGUCGCAA

1

1 transposon

LINE

Helena10791 GAUAACCAAGGACGUUCACACGAG

1

0 transposon

LTR

opus

10792 GGAUACUCGAAGACACCACGGUGU

1

1 transposon

LTR

ninja-Dsim-like10793 CAAAUCAAUCCCAACCAAACCCGUCA

1

1 transposon

LINE

G2

10794 AUCGCAACUGCUACCACUGACUACAA

1

2 transposon

LTR

diver210795 AUAGCUAAUUAACACAAUCCCGGGGCGU

10 ncRNA

10796 UCUUGAAUCACCGAAUUGAAAUUGGA

1

0 no annotation

10797 UGGACAACUUGGACACCUGGUGGC

10 transposon

Unknown

RR5096010798 UCCCUGAACGCGCCCGAUCUCGU

1 no match

10799 ACCACCCCUGAACGCGCCCGAUCUCGUC

1 no match

10800 CACCCCUGAACGCGCCCCGAUCUCGUC

1 no match

10801 CACAACAGUAAUUUAGAUUUUUACCC

1

0 transposon

LINE

Cr1a

10802 UCCUUCUCUUCGUUGCGCUGGCUCUGUG

1

2 no annotation

10803 AAUAGGGACGGUCGGGGGGCAUC

1 no match

10804 AAGAGGGACGGCCGGGGGCAAUUCCGAU

1 no match

10805 AAACACGAGAGCCGAGCGCUGUUG

1

1 transposon

LTR

opus

10806 UCUGCAGGCGUCUUAGGGAUUGG

1

0 transposon

LINE

G2

10807 AACCGAAUUAAUCGCGAGGCUGCAAG

1

0 transposon

LTR

mdg3

10808 CCGAACUUGAGACCGCCCCCUGGAUG

1 no match

10809 GCAGUCGUGGCCGAGCGGUUAAGGCU

110810 CGGCGGGGAAGGUGGCUCGGGGGG

1 no match

10811 AUGUACAAUGCUGCCGAGUUUGCCUAA

1

2 transposon

10812 GCGAAUGAUAAGUUUCAUGCCUCCGG

1

0 no annotation

10813 GCGGGCCUCACGAUCCUUCUGA

1 no match

10814 UGUAAUUGUCCGCGAGCUUGCCC

110815 CUGGGCCCGAACCCUUCUGGUGUGUU

110816 UACUAACUUCCCGAUUACUAAACGA

rRNA

rRNA

1 ncRNA

tRNA
LINE

G2

0 transposon

LTR

3S18

1 transposon

LINEbaggins1

0 transposon

LTR

10817 ACAACAAACAACACAUACCCACUGG

1

1 transposon

LTR

GATE

10818 CUAAUACAUAUCGAUCAUUACGGCCC

10 transposon

LTR

flea

10819 UACUAGGCUGAGCGGAGAACCAGAGUU

1

2 transposonLow̲complexity

F-element

10820 GACCAUAUCCGAAGACGCGGCGCUAG

1

0 transposon

LINE

F

10821 AACCAACAACGACAACGAGACGCAUGA

1

2 coding gene10822 GCAAGAAGUACCUCCCGUAGAUGAC

1

0 transposon10823 GACUAGCUGGCCGAGUAUUUGAUA

1

0 Su(Ste)

Su(Ste)10824 AACGGGAAAACUUACCAGGUCCGAA

1

1 ncRNArRNA

10825 CAACUGUGAGGCGAUCCUCAA

1 no match

10826 UCGUGUUGCUUGAUAGUGCAGCACUAA

10 ncRNA

rRNA

10827 AUACCAGCAAGUAUCAGCACGGGAGAC

1 no match

10828 GCACACAGAGGAGGCAGAUGAGAGCA

1 no match

10829 UGUUUCAUCGUUAGACGGCCCGGG

1

1 AT-chX

AT-chX-B

10830 AACUAUCUUCUCAACCCGCUGAUAU

1

0 no annotation

10831 UACGGGCUCGACAUGUUGCCAGUUCUAC

1 no match

10832 CAAUUCAAGGACAUUGCUAGGU

110833 UGGGGCGGUACACCUGUCAAACGGU

1 no match

10834 ACACCGCCCGUCGCUACUACCGAUU

10 ncRNA

10835 GAAGCCCAAACGUGAACCAGGUUC

10 transposon10836 AAACAAAAAUAAAAAUCGGGGCAA

1 no match

10837 ACGUGUAUCAUUUCCUAGCCAUUAUACG

110838 GACCGGCUCCGGGACGGCUGGGAAGGC

1 no match

10839 AUCGAGAUCAAGAUGUCAAAAGGGG

1

1 transposon

LTR

flea

10840 CGAGCACAACAGAUCUCACAGGUCGGUC

1

1 transposon

LTR

gypsy310841 CGGUGCGGAGUGCCCUUCGUCCUGGGA

1 no match

10842 UCCUUCCCAAGGCGUCUGGAUCCAGU

1

0 transposon

LTR

flea

10843 CAUUGAUCCAGCUGCUGUUGUUGUUG

1

0 no annotation

10844 AGAAUGGUGUGGCGCCCAGACUGAAGC

1

0 no annotation

10845 UUGAGAAGAACACCGACCUUUUACAA

1

0 transposon

LTR

Idefix10846 AAGGAUUGGCUCUAAGGGUCGGGU

1 no match

10847 CCAGAAGCAGGGAUAACACUUGGAAACA

1 no match

10848 AACGCUGAUAAAUCCUCCCACACCACC

1

0 transposon

LINE

G2

10849 AUCAACUGUGGAGGGGAUCCUCAA

1 no match

10850 AAAUAAGACCUCUGUUCUGCUU

110851 AGGAGAGCGUUCUGUAAGCCUGUGA

1 no match

10852 AAUCACUGAGGCGGAGUUGUACGAUCU

1

1 coding gene10853 UAAUAGCAAAGGGAACAUGGAGAA

1

0 transposon10854 CCCCGCGGAAAGACGGAAAGACCCCACG

1 no match

10855 CAGAUCAACAAAGUACGGUGGGGAA

1

1 no annotation

10856 GGUUUCAUCGUUAGACGGCUCGGGC

1

1 AT-chX

10857 UCCUAUCUUAUCCCGUAGUACAUCAUC

1

0 transposon

LTR

gypsy

10858 ACACCAUUCGUAGACGACCUGCUU

1 no match

10859 UGCUCUCGUAUGCUUGCCCGAUAU

1

1 transposon

LINER1-element10860 GAAGCCGGUGAUCGAUAGUUCCCC

1

1 repeat10861 UGUGGCCUUGUUUCGAGACAAAU

1

0 ncRNA

10862 UUUGUUGAUCAGUUUACACAUUAU

1

0 transposon

LINE

Cr1a

10863 GAGAGUGGACGGGAGCGGCGGGGCG

1 no match

10864 AGCUUCAUCCAAGCGAACUGUGCCCGAA

1

1 transposon

LINER1-element

10865 CGAGGCCCUGUAAUUGGAGUGAGUAC

1

1 ncRNA

10866 AUCAGAAACCCACUUUUGUCCCAGA

1

0 transposon

LINE

G2

10867 CUGUAACUCGGCUGCAACUCGGGUCAA

1 no match

10868 CACUAUAGGAGGACAGUCGACCA

1

0 transposon

LINEbaggins10869 UGCUAGAAGACGAUUUUCGGGC

10 transposon

LINE

Cr1a

10870 GUCGUGUUGAUCGGUACUUGCUGUC

1

2 transposon

LTR

invader4

297

CG3585-RA¦CG3585
LTR

1 ncRNA

gypsy

rRNA
rRNA
Unknown

0 repeat

RR50960
LSU-rRNA̲Dme

0 ncRNA

rRNA
CG13526-RA¦CG13526
LTR

micropia

AT-chX-B

trf
snoRNArRNA

10871 GCCCGUCCCCGCCCCUUGCCUCUCGG

1 no match

10872 AAGCGUAUUACCGGUGGAGUUCUUAUAU

1

0 ncRNA

10873 GAGAAUAGCAGAAUAUCCGAGAUUGAA

1

0 no annotation

10874 ACUGGAGUCGACGGAAGGAGGAA

1

0 transposon

LINER1-element

10875 AAUUCCGUCAACGAAGCCCAAAGU

1

0 transposon

LTR

Rt1c

10876 AUCUCUAAAUCUAUGGGGUGGUGGUGCAUG

1 no match

10877 UUCUGAGAAAAUUAAGUGCUGGAA

1

0 transposon

LINE

Circe

10878 CCAGUUCCUCUGCCGCGUGCCCAC

1

0 repeat10879 UCUGUGAGGUUGCGCCUGAGCCCCGA

1

0 transposon

10880 AACAGAGAGAAGACUCACCCGACGA

1

0 no annotation

10881 GCCCGGAUAGCUCAGUCGGUAGAGCAUUGU

1

1 ncRNA

10882 GAAGACGAAAUCCAAACUGACAAUGG

1

0 transposon10883 GGUCUUCCUGCGCUUGCGUCCCGUUA

1

0 coding gene10884 AAAAGGAGCAAUUUUUGGCCGUCG

1 no match

10885 AGAGACCCGUCGCCGCGCUCCUCCCCCCCCU

1 no match

10886 CCGGAGGGGGAGCCUGAGAAACG

1

1 ncRNA

10887 UCUCCGCGCAUGUUGACUGGGUA

10 transposon

LTR

opus

10888 UCAGCAGCGGGAUGAUCAGUAGCAC

1

0 transposon

LINER1-element10889 UAGCUUGCACCAUCACCAUCACCAU

1 no match

10890 UUGUUUCGCAAAAGUUGACCGAACUUGA

1

0 ncRNA

10891 AGGCCAGAAACCACCCUCGUGAAGU

1

0 transposon

10892 UGCCGGAGCGAGGAGGAGGACUAA

1

1 Su(Ste)10893 CCAGGAAAACGGUCAGGUACGGAG

1

0 transposon10894 CCAGGCCCGUAUAACGUUAAUGAU

1

0 ncRNArRNA

10895 AGCCCCCGGGGAGCCGCCCUUGGAAU

1 no match

10896 GGAGUUCUCGAUGGCGCCCAGA

1

0 coding gene

CG10252-RA¦CG10252

10897 CGAAUCAACAAAUUGCGCCGAUA

1

0 coding gene10898 CAAGAUAUGACCAAAACAAAGCA

1

0 transposon

DNA10899 CGAAAACCGCAAUUACUUCUGCACCAGUCC

1 no match

10900 GCGCGUCUGCCCCCCCCCGCCGGGUGCGC

1 no match

10901 UCCCACGGAACACCCGAGCAAUGCCC

1

1 transposon

LINE10902 GUGCUCCUAAACGAGUGUUAUUGUGGG

1

1 ncRNA

10903 AAACCUGAACAUGAUCCUGAGUCG

1

1 transposon

LINE

Helena10904 ACAUAAGCAAGGACCCGUAGAGC

1

0 transposon

LTR

GATE

10905 AGGCGCGCAAAUUACCCACUCCCGAC

1 no match

10906 CUUGUUCCCCGGAUAGUUUAGUUACGC

110907 ACCCCUCCCACGGCGCGACCUCU

1 no match

10908 UACCAACCCAAAAUAUGACUGCAUU

1 no match

10909 CAAAUUCCGAGAAUGCAGGUUCCU

1

0 transposon

10910 UUCGAUUCCGGAGAGGGAGCCUGA

1

0 ncRNArRNA

10911 CCAAAGCUUUUGGGCUCCGGGGGAAG

1

0 ncRNA

rRNA

10912 UGAGAGGCGCCGUAGUUACCACCC

1

0 no annotation

10913 GCUGGAAAAAAACGAAGUAUAACGA

1 no match

10914 GGCUCCGGGGGAAGCAUGGUUGC

1

1 ncRNArRNA

10915 CAGCAGCGAUGCGGGUCCUGAGG

10 coding gene

CG6061-RA¦mip120

10916 GGUGCGCGAGAUAGCCCAGGACUU

1

0 coding gene

10917 UGAACGAUGACGAUCCCACGGCUGGAGC

1

1 transposon

10918 UACAAGUACACGUAGGCUGCGAAA

1

1 repeattrf

10919 UAUUACGACGCGAGAGGUGAAAUUCU

1

0 ncRNA

rRNA

10920 GACAACCAGAGAUCUAGAGGGCCCU

1

1 no annotation

10921 UAAGGUAAAACUUAUCAUGCAAGCAG

1

0 transposon

10922 CCCCAAGAUGUCUGCCACAAAG

1

1 coding gene10923 GAGGAAUUUGAGCUGCGAUGACGCC

1

0 transposon

LTR

ninja-Dsim-like10924 CAAGAUAUGACCAAAGCAAAGGCA

1

1 transposon

LINE

Cr1a

10925 AAUGCUCGCAAAUGGAUUGUGGGACCA

1

0 coding gene10926 ACAUCUGUGAGACUACGCUUGAGUU

1

1 transposon

LTR

gypsy210927 UAUUUGUGCACAACACGAGCCCCAGGU

1

1 transposon

LINE

Circe

10928 CACGAGGAGCUCGGGAUUCCAUGGUUA

1

1 transposon

LINE

G2

10929 AUCAACAACGAUGUGGUAGUGAGUG

1

0 coding gene10930 GCAACCCAAAACGUAACGGCAGAGG

1

0 transposon

10931 AUGCCCUGCAGACCAUUACUCGUCAU

1

0 no annotation

10932 AACCUAACUAAAUGAUGUUUCCCAG

1

2 no annotation

10933 GACCAUAAAGAAGCCGUCGAAA

1

1 ncRNArRNA

10934 CUGUGAACGAGUGAACUGGCAACA

1

0 Su(Ste)

Su(Ste)10935 UGAGCGAACCCGGGGAACUGAA

1 no match

10936 AUCCGCGGCUAGACGGAAAGACCCCGUGA

1 no match

10937 AGAGCAUAAAGACGACGAAAGUGAUC

1

2 transposon

10938 GUAUCUAGGACUACCAUGGUUGCAACG

1

0 ncRNArRNA

10939 AGUGGACCCGGUUUCUGGAGAGGUG

10 coding gene

CG31226-RA¦CG31226

10940 UAGUACGAGAGGACCGAAUUGGACAAA

1 no match

10941 UGAUAACUCAUAUCGUAAACGGCCUC

110942 AACGUGACGAUCCCACGGCUGGAG

1 no match

10943 AGGAUGCCGCUAAGUUCUCGCUGAGAG

1

1 ncRNA

10944 UCGAUCUAGAGGAGCUCCUUGAAA

1

1 transposon

LTR

flea

10945 CUGACUAAGAGGGCUGCACAGUUUCC

1

0 transposon

LTR

HMS-Beagle

10946 GACACCAGGAAGAUUGAUGAGGCC

1

0 transposon

LINE

Rt1b

10947 AAAAGACUUAAAGAUGAUGAACCCA

1

1 transposon

LTR

gypsy810948 GAACGAAAGUUAGAGGUUCGAAGG

1

0 ncRNA

10949 AGGAUAGUCCCGAAGAAACCUAAACC

1

1 transposon

10950 GCGGUUAAACCAUAUCACGUACAGUC

10 ncRNA

10951 ACCAAAUUAAUCGCGAGGCUGCAAG

1

1 transposon

10952 GCCCAGUCCCAAUCGCAGCCGAUGGCCACC

1

0 coding gene10953 UGCAACAUAAUGACGGUUUAGUAAA

1

0 transposon

rRNA

trf
LTR

tRNA
LINE

Porto1CG12298-RA¦sub

rRNA

rRNA
LTR

opus
Su(Ste)LTR

roo

CG41545-RA¦CG41545
1360

G2
rRNA

1 ncRNA

0 transposon

blood

rRNA

LTR

Rt1c

CG5825-RA¦His3.3A
LTR

DNA

ninja-Dsim-like

NOF
CG13315-RA¦CG13315

CG2263-RA¦CG2263

CG3249-RA¦yu
LTR

LINE

LTR

HMS-Beagle

Doc3

flea
alphagamma-element

rRNA
LTR

opus
snoRNA

LTR

mdg3
CG11866-RA¦CG11866

LINE

Cr1a

10954 GCCGAGAAAAAUGAACACGAAACGA

1

0 transposon

LTR

Quasimodo

10955 UUUGCAAAAACGAGAGCGACAGAGC

1

1 transposon

LTR

micropia10956 AAGACCUAUAAACACACCUCAACAGU

1 no match

10957 CGCAUAAUCAAAACAUCCGAUGACG

1

0 transposon

LTR

McClintock

10958 CCCGCGGAAAGACGGAAAGACCCCA

1 no match

10959 CUACUCCGGAUGUACCCAACAGAUACCAU

1

1 transposon

LTR

Idefix10960 AUGUCUAUGAGAUGACCGUAAUG

1

0 transposon

LTR

ninja-Dsim-like10961 UCCAUUCACUCCAUGGCGUUACCACGA

1

0 transposon

LTR

springer

10962 AUAGUACGUAGGCAUAAUUCCAAUA

1

1 transposon

LINE

Rt1b

10963 UACAAUACCCAGUUACUCGUGCC

1

0 no annotation

10964 UCUCAUCGUCGUAGAAACAAGCCCCGA

1 no match

10965 AAAAAACCGAAUGCGAUCCGGAUU

1

1 coding gene

10966 CACACGAAAAUACACGUUCGAAGAGC

1

0 transposon

LTR

GATE

10967 CGCUAGCUCAUUUCCCGGGAUGUUU

10 transposon

LINEbaggins

10968 AUGAAAACAGUUCUCAUUGGAGGCCA

1

0 transposon

LTR

flea

10969 AAAACCUGAAGAUGAUCCUGAGC

1

1 transposon

LINE

Helena10970 GCAAGACGACACUCUGCAGGAACCCAAU

1

0 repeat10971 CAAGAUAUGACCGAAAACCCAGACAC

1 no match

10972 CGGAGAAGCCGGCGGGAGCCCCGGGGAG

1 no match

10973 AUAUAAAAAUCCUCAACUGUGAGG

1 no match

10974 AAUCGCUCGAUGUCGUGAGGUGA

1

0 no annotation

10975 UUAGACAGAAAAUAAGGGGACACGCC

1

0 transposon

10976 ACCAUGAAAGGCGUUGGUUGCUU

10 ncRNA

10977 GUAAAUGAAGAAAAUAUUGUCGAUGU

1

0 transposon

LTR

invader1

10978 AAACCAAGCUAGAGUACAGAUCGAAA

1

1 transposonLINEjockey10979 CGUUCAAGGACCACGCGAGCUACGCCAU

1

1 transposon

LINE

Rt1b

10980 CCCAGAAACACAGUGUUCGACGCCA

1

1 coding gene

10981 AAGUCCCGCCACCGCACCCAUAGAA

1

0 transposon

10982 CCCCGGAACUUGGACACGGCGAUGCCGGU

1

0 coding gene10983 GAUGCAAACAAACAAGAGACGGCA

1

0 transposon

LINE

I

10984 GUUGCAAGAAGUGCGACCGAUCCCA

1

0 transposon

LTR

GATE

10985 UUGGGAACACCGCCGUGUUGUUGGCCCU

1 no match

10986 AGGGACAUUAUUGUGGAAAAUGUGACA

1

1 no annotation

10987 UGCUCGAGGGCCCGUGGUUACCAG

10 coding gene

10988 ACCCUACUGAUGAUGUGUUGUUGU

1 no match

10989 CUUUAAUGUAUUAAACGGGCGGCC

110990 CAGUGGCGAAGGCGUCUAUCUGGUUCA

1 no match

10991 AAUCUCGCGUCGGGCCGUACCCAU

1 no match

10992 CGCCCAAUCUGCGGAUCCGAACACCAAC

110993 AAAACCUGAAGACUGAUCCUGAGUCGA

1 no match

10994 CCUGCAUGAAGAUGAUUCCGAAGAUC

1

0 transposon

LINE

Circe

10995 UGUAAGCGAUCUUGAGGCGACAGU

1

0 transposon

LINE

G3

10996 UGCCUUCGAAGAGUCGAGUUGUUUGGG

1 no match

10997 AUACUACGGAACCACCGUGCCCAGUGC

1

0 transposon

LTR

opus

10998 AUGGUUGCAACGGGUAACGGUGAAUCA

1

1 ncRNA

rRNA

10999 GGAGUGAUUUGUCUGCUUAAUU

1

1 ncRNA

rRNA

11000 ACUGAUAACGAAAUGGAUGAC

1 no match

11001 GCGCUUGUGACGGCCCGUGAAAAAUCC

1 no match

11002 UCGGGAGCGAGGCAUGUCUGUCUU

111003 UCCCCGUGGCGUAGGUCCCCACCGA

1 no match

11004 ACCUCUCGAGCAUCGAUGCAAGC
11005 GUUUAAAGUCGAAUAGGUUUUCCGUGU

0 transposon

CG4714-RA¦CG4714

trf

LTR

opus
rRNA

CG18743-RA¦Hsp70Ab
LINE

BS
CG3982-RA¦CG3982

CG3800-RA¦CG3800
LTR

0 coding gene

invader6

CG5016-RA¦Mst57Db

0 transposon

LTR

invader1

1

0 transposon

LINE

INE-1

1

1 coding gene

11006 ACGAUCAAUAAAACAUACGCCCGGUU

1

1 transposon

LTR

GATE

11007 UAGAGUAUUCGAUCUUGAGGCGUGUGA

1 no match

11008 CGACAAAGGAGUAUUGCCAGAUGAG

1

0 transposon

LTR

gypsy811009 UGCUCUCGAAUGUAUUCCCGAUAU

1

1 transposon

LINER1-element

11010 ACCCUUGAUAAACGUAUGACUUUCGGU

1

1 transposon

LINE

BS

11011 GAUAGGCCGAUAGCGUACAUUUCCC

1

0 transposon

LTR

opus

11012 UUCGUGGAGUGAUUUGUCUGGUUAAU

10 ncRNA

11013 CCAUCCGGUAAGAUUGUGCCCGCGU

10 transposon11014 AAUACCACCCUGAACGCGCCCGAUCUCGU

1 no match

11015 UCCGAGCUAAUAUGGCACCAAG

1

1 no annotation

11016 CCAAGAGUUGACCGAACUUGAU

12 ncRNA

11017 UACCAACCCAGAAUAUGACCCAGC

1

0 transposon

LTR

McClintock

11018 CCAAAAGAUAAAAACGUUUACGAACAAU

1

0 transposon

LTR

mdg3

11019 AACGAGUGUUAUUGUGGGCCGG

10 ncRNA

11020 CCGAAGAUGACCAAGUUGGCAACC

1

1 transposon

LTR

gypsy611021 ACCACCCUGAACGCGCCCGAUCUCGUCU

1 no match

11022 AAAACCUGAAGAUUAUCCUGAGUCG

1

1 transposon

LINE

Helena11023 GCUCCGGGGGGAAGUAUGGUUGC

1 no match

11024 UGGAAGAUUAGCUCGAGUAGAACUGU

1

1 transposon

LTR

3S18

11025 UUCUGCCCGUCGAUGUGCCUAUGCGCCC

1

0 coding gene11026 AAGAGGGCGUGAAACCGUUAAGAGUU

1 no match

11027 AGCACGAGCGCACGUGUUAGGACCC

1 no match

11028 GCUUUAAUCACGAGCAAUGCGGUGG

111029 UGCUUGCACCAUCACCAUCACCAU

1 no match

11030 GAAGAAGUAAACAGCGACUACACG

1

0 transposon

LTR

micropia11031 CGCACAAACGCAACGCUCCUGUACAA

1

0 transposonLow̲complexity

F-element

11032 CAUUGGAGGGCAAGUCUGGUGCCA

1

1 ncRNA

11033 UUAAACAUGACACUUCUGGACA

1

1 transposon

LTR

11034 CACCACAAAUGAUUAUUGAUACCGGA

1

0 transposon

LINE

Cr1a

11035 UGUCCGCUAGCUCAUUUCCCGGGAUGUU

1

0 transposon

LINE

Fw2

11036 ACUCGCCGAAUCCCGGGGCGAGGGAGUC

1 no match

CG18449-RA¦CG18449

rRNA
LTR

Rt1c

rRNA

rRNA

CG8349-RA¦CG8349

1 no annotation

rRNA
297

11037 UGUUCCCGGCGGUGGCGUCGUCCCUG

1 no match

11038 UAGAUGUGGCCUGAAGAUGAUUUUCC

1

0 transposon11039 AUCUCAUCGUCGUAGAACAAGCCCGAGG

1

1 Su(Ste)

Su(Ste)11040 CUCGAGAUGUGUUCGGAAGGAUCGG

1

1 coding gene

CG3506-RA¦vas

11041 AUUGUGGGCCGGUACUAUUACUUUG

10 ncRNA

11042 UACGACGAGAAUGAGAUCAGCGCG

1

0 transposon

LTR

frogger

11043 UCGGGCCCGAACCCUUCUGGUGUGUUGA

1

2 transposon

LINEbaggins

11044 UCCAGAGAGUCGUGUUGCUUGAUAG

1

1 ncRNA

11045 AAAAGGGGAACUGAGGAACGCAUU

1

0 transposon

LTR

invader3

11046 UCCAUCUCGAAAACGUUACCAAAG

1

0 transposon

LTR

ninja-Dsim-like

11047 CCCGCCGAGGUACGAUUCCUGCACC

1

1 transposon

LINER1-element11048 GGAGUGCCCUUCGUCCUGGGAAACGGGGUC

1 no match

11049 UGACCAUUAAAGUGUGACCCACCAAA

1

0 transposon

LTR

Quasimodo

11050 UAAACCGUCAUUCCAGCGCAAGUUGCCCU

1

1 transposon

LTR

ninja-Dsim-like

11051 ACCGCAACGAACUCCCAGCCCAGC

1

0 transposon

LINE

Doc

11052 UGAGACUACAAACGGAUUGCGGACCGAA

1

1 no annotation

11053 UCCCAUAUGAAGAAGCUCCUGAGCGU

10 transposon

LTR

blood

11054 GAUCUCAACUGUGAGGGGGAUCCUCAA

1 no match

11055 UCAACUGUGAGGGGAUCCUCCAA

1 no match

11056 CAGACAAGUAGAGGGCCGUCGCCG

1

0 transposon

LTR

accord11057 UGCUACUCGAAUGUAUGCCCGAUAUU

1 no match

11058 UGAGGACUUGAGCGAUUUAAGUGGCA

1

1 Su(Ste)11059 UGGACAUCCGGAAGAGUUUGCGAC

1

0 coding gene11060 CAAACCAAUCCCAACCAAACCCG

1

0 transposon

LINE

G2

11061 GUCCCGAAGAAACCUAAACCAAA

1

0 transposon

LTR

opus

11062 UCUGCCGAACGGUCUGCGGAUUGCC

1

1 coding gene

CG8728-RA¦CG8728

11063 GUGGAAUCUAACCGACCGCCAUGACCC

1 no match

11064 GUUCAGUACACACAGGGACAGCAAAA

1

0 ncRNArRNA

11065 CCGAACUUGAGACCGCCCCCUGGACGACCC

1 no match

11066 GUCGGAGGCUGGCGGCGGGGGGU

1 no match

11067 UUGCCUCUGGAUGAUGGCUGAUGCUCG

111068 UGUGGAAUUAUGACUGAACGCCUCU

1 no match

11069 GCGCACAGAGGAGAGCAGAUGAGAGCA

1 no match

11070 GGGGGUAUAGCUCAGCUGGGAGAGCGCU

1 no match

11071 AGGAGGCUAACGAGGGGAACUGAAA

1 no match

11072 AUCCGCCUGGGGAGUACGGUCGCA

1 no match

11073 AGAACUGGCGCUGCGGGAUGAACCGAA

1

2 ncRNArRNA

11074 ACGGAGGUGUCCCAAGGCCAGCU

10 ncRNArRNA

11075 UAUCUAGUACUACCAUGGUUGCAACGG

1

1 ncRNArRNA

11076 UGGCCAGCUAGUCCUCCUCCUCGCCCCG

1

1 Su(Ste)

11077 UGAGAUAGUACAAAUCGGUUACGAAAA

1

1 transposon

11078 UCCCAGCUCGGGGAGGUAGUGACGAAAA

10 ncRNA

rRNA

11079 GACUUCCGAACUGGCCGAUAUGAA

1 no match

11080 UCCGAGGAACCAAUCGAUCCAGCUG

1

1 Su(Ste)

Su(Ste)11081 GUGAUCACUGUGACGCCUUGCGUGU

10 ncRNA

rRNA

11082 GCAUGAUUCACGCCCGAUACAUAGUGUC

10 coding gene11083 GCUACCGGGCGUGAGCAUCCACAAUGC

1

0 transposon

11084 AAUGGCUCUCUCAGUCGCUUCCCCGGGGGA

1 no match

11085 UAGUUUCAUCGUUAGACGGCUCGG

1

1 no annotation

11086 GCUGCACGAAAUGAACCCGAACGAA

1

0 transposon

11087 ACGACUGGGAGGAUCAUCUGGCCGUC

1

0 coding gene

11088 CAACGAGUUCCUCUGCCGCGUGCCC

10 coding gene11089 UCCGCACUUCGUCCCUCAAGAUAUGAAC

1

0 transposon11090 AAACUUGAAAUCCAGGUGAUCCGGC

1 no match

11091 AACGAGUUCCUCUGCCGCGUGCCCAC

1

0 coding gene11092 ACCGGUCGAUUCCGAAUUCAGACGUGCU

1

0 coding gene11093 UCCAGAAUGAGGACCUGAGGGGCAU

1

0 transposon11094 AGUUAACUAUCCCAAAGGCAUCACGC

1

0 no annotation

11095 AACUUCGAUAGCGAACUGACUCUGUAA

1 no match

11096 ACGAGAGGAACCGCAGGUACGGACCA

10 ncRNA

11097 UAAGCUAGACUAUGUAUCCCCGGGUAU

12 transposon

11098 ACCAUGAAAGGCGUUGGUUGCUUAAAA

1

0 ncRNA

11099 UGCUGACUCGGCUGAUGUUUCUCC

1

0 transposon

11100 UUUGAGAGGCGCCGUAGUUACCACC

1

0 no annotation

11101 AAACGAUGCCGACCGGCGAUGCGGC

1 no match

11102 UCAACCAGCACGACAAGGCCCAUACG

1

0 transposon

11103 AGGAUCCCAAGCUGACUCCCGCCGGCCA

10 coding gene

11104 CAUGAAUGAAUACAUGGAUUUAGGAC

1

0 transposon

11105 ACACCGCCCGUCGCUACUACCGAUUG

10 ncRNA

11106 AAGGCGCGGGUAACCCGUUGAACCCCAUUC

1 no match

11107 UCCAUCUCGAAUACGUCGCCAGAGCGCCU

1

1 transposon

LTR

ninja-Dsim-like

11108 GACCGUAGCACCGAACGAGCUCCUUUC

1

0 transposon

LINE

Rt1b

11109 CACAGAGUACGGGGGCUUACUAAC

1 no match

11110 UCGAACGAUAAACGGUGCUAACCAGCCGG

1

0 transposon

LTR

GATE

11111 UGCUCUCGAAUGUAUGCCUGAUA

1

1 transposon

LINER1-element

11112 GUUCCUCGGGGAUCAAGGGCAACGAG

1

1 no annotation

11113 UUAGAUGUCCUGGGCUGCACGC

10 ncRNA

11114 ACCUAAAUGAUGCUGGUAAAAAC

1

0 transposon

LINE

Doc

11115 CCGACACCGAGCGCCUCAUCGGA

1 no match

11116 CAGAACUGGCGAUGCGGGAUGAACCG

1 no match

11117 AACACGGGAAACCUCACCCGGCCGGAC

1 no match

11118 UUCUUGACAACCCGAUCGGACCUCACGC

1

0 transposon

LTR

invader4

11119 AGGUAGACGACCGGGCGAUGGCGA

1

0 transposon

LINE

R1

0 transposonLow̲complexity

F-element

rRNA

rRNA

Su(Ste)CG6963-RA¦gish

LINE

G2

Su(Ste)LINE

I

CG40635-RA¦CG40635
LTR

ninja-Dsim-like

LINE

Doc3
CG1242-RA¦Hsp83
CG42398-RA¦SteXh:CG42398

DNA

1360
CG42398-RA¦SteXh:CG42398
CG8649-RA¦Fim

LINE

Rt1b

rRNA
LINE

Doc
rRNA

LINE

Rt1b

LINE

G2
CG13340-RA¦CG13340

DNA

HB
rRNA

rRNA

11120 UGCACAUUGACAUAUUUUCAACCGA

1

0 transposon

11121 AAAGCAGAAAUGUUUGUCCGAUAU

1

0 Su(Ste)

LTR

gypsy

11122 GCGGGGAAAGAAGACCCUGUUGAG

1

1 repeat11123 CGAGAUGUUCAACUACACGGAUUCG

1

0 transposon

11124 ACUCGGCUCGUGCGUCGAUGAAGAACG

1

2 ncRNA

11125 UCCUGGGAAAACGGGGGCGCGGCCGGAAA

1 no match

11126 ACUCGCCGAAUCCCGGGGCCGAGGGACG

1 no match

11127 UUGUGAGUUAUCCGUCAGGUGAGGCGA

1

0 transposon

LTR

micropia11128 GCAUUCAAUACAGCGAGAUGGCUC

1

1 transposon

LTR

Quasimodo

11129 AAGACGAGGUUGACGCCGCGGGUUC

10 transposon

LTR

gtwin

11130 UGGCUCUCUCAGUCGCUUCCCCGGGA

1

2 ncRNA

11131 UGGUAACCAGCUCGUCGACCUUAGC

1 no match

11132 UGCCUGAGAAACUCGCGCCCGUUGAGG

1

1 coding gene11133 AUCAUCAGUUUAUUGCGGGAUGA

1

0 transposon

11134 UGUCCCAAGGCCAGCUCAGUGCGGA

1

0 ncRNA

11135 ACGAAAACUCAAUAUGGUAACAAUGGCA

1

1 transposon

11136 UGAGCUGUGGACCGAGCGGAAUGA

1

0 coding gene11137 CUCGGAGGUGGACUCGCCAGCAACA

1

0 transposon

LINE

X

11138 UGCCAUUCCAGGUGGUUCAAGCCC

1

0 transposon

LTR

GATE

11139 AUGCCGGAGCGAGGAGGACUAGCU

1 no match

11140 UGCACAUUAAGUUUUGAUCUCCGAAU

1

2 transposon

LTR

invader1

11141 CAUCUUCUUAACGCAGCUGCCGAA

1

0 Su(Ste)

Su(Ste)11142 AACACCACAAGGAGACGCAUGAUCCGCA

1

0 coding gene

CG10366-RA¦CG10366

11143 AACCGAAUGAGACCUUGGAGGACU

1

1 ncRNArRNA

11144 UGUGACUACAAACGGAUUGCGGACC

1

1 no annotation

11145 ACCGAGAGAAGACUUUCACCCGAUG

1

0 coding gene11146 GUCCCGGAUACAUUGUCUCGUGUA

1

0 transposon

11147 CAGAUCAACAAAGUACGAUGGGGAACCAC

1

0 no annotation

11148 CACAGAGUACGGGGCUUACCGAAGUCA

1

1 transposon

11149 UAAACCUGAAGGAGUGAAAAUGCU

1

0 no annotation

11150 GCCUAAGUACUCCUCAGCGACCGAUA

1 no match

11151 CAGAUCAACAAAGUACGAUGGGAA

1

1 no annotation

11152 ACCUGGUUGAUAGCGUAGACGACGACC

1

1 transposon

11153 AGACCCGCAAGGACCCGUUCAUCCUGGA

1

0 coding gene11154 UCAAGCGAUAUUCGAGGCCCAACG

1

0 no annotation

11155 GGUAGAGAUAGGCCGAUAGCGUACAU

1

0 transposon

LTR

opus

11156 ACCAUUUACAAAAUGUAUUCCGACCA

1

0 transposon

LINE

Doc

11157 CACGAAAUGUCGUUACCGAGAAGA

1

0 transposon

LTR

copia

11158 CAGGAUCAAAUAAGUAGACUUCGAG

1

0 transposon

LTR

micropia11159 UCGAGAAGCGAACCCGGCGAACUGA

1 no match

11160 CACGAUUACAAACACUGAUUUGCCC

10 transposon

LINE

S

11161 AUCGAAUGGAGUGCCAGAACCCGUUGU

1

1 transposon

LINER1-element11162 GUCGUGUUGACCAACUGUUGCGACGU

10 coding gene11163 AACGAGCGCACGUGUUAGGACCCGAAAG

1 no match

11164 GACAACCAGAGAUCUAGAGGGCCCAG

1

1 no annotation

11165 AGCUUCAUCCAAGCGAACUGUGCCCGUA

1

2 transposon

LINER1-element

11166 UGAAGAAAUAAUUGAAAUGAAGCCG

1

0 transposon

LINEbaggins

11167 AUCCGGUAAAGCGAAUGAUUAGAGGUC

12 ncRNArRNA

11168 AUCGCAAAGAAGCUGUUUUGAAGGACCA

1

0 coding gene

CG41423-RA¦CG41423

11169 CUUGGACCGAACACUUUGAACCAA

1

0 Su(Ste)

Su(Ste)11170 AAAAACUCAAAGAAAAAGACGAUGAC

1

0 Su(Ste)

Su(Ste)11171 CUACCGCAUAUCGGACAAAGAGGCCCGC

1

0 coding gene

CG2127-RA¦CG2127

11172 UUCAAAGUUACCCCAGGAUGCUGUGC

1

0 no annotation

11173 GAAACCAUCAGACGCCUCCAGAGG

1

0 transposon

11174 CAUGGAGGAGUCCGUGGCAUUCAGGUU

10 ncRNA

11175 UCGGCCCGAACCCUUCUGUGUG

1

2 transposon

11176 GAGUACUUCAGCCAGCACUGGA

1

0 Su(Ste)

11177 UGCAUUGCCUUAACGUUAUUAUUA

1

0 transposon

11178 GGGUCCUGAGAGAUGGGCGAGCGCCGUU

1 no match

11179 CGACCCACCAGGAUGAUUAAGCGGCCAC

1

0 coding gene

11180 CAGAGGUAGACGACCGGGCGAUG

1

0 transposon

11181 GCUCUGAAGAUUGAGAUAGUCGG

10 ncRNA

11182 ACUCGCCGAAUCCCGGGGCCGUGGGAGC

1 no match

11183 UAACGAGAGUAGUGAAGAGGAAGAU

111184 CAUGGGAAUCCGAGGUGCCGUAGAU

1 no match

11185 ACCCGUCAAACCCCACCUGAAUCUCCGC
11186 AAAACCGAUAUGCUAUCUUGGCUGA

Su(Ste)
LSU-rRNA̲Dme
LTR

3S18
rRNA

rRNA
CG3373-RA¦Hmu
LINE

Circe
rRNA

LTR

HMS-Beagle
CG4821-RA¦Tequila

CG12717-RA¦CG12717
LTR

gypsy12LINEbagginsLINE

Rt1a
CG6213-RA¦Vha13

CG4286-RA¦CG4286

LINE

G
7SLRNA-RA

LINE

baggins
Su(Ste)LTR

297
CG32435-RA¦chb

LINE

R1-elementrRNA

1 transposon

LTR

Dm88

1

0 transposon

LINE

G2

1

1 transposon

LINE

Doc

11187 UCGACAACCAGAGAUCUAGAGGGCCCAA

1

0 no annotation

11188 GAAGGACGACCACGUUGUAAUGCC

1

0 transposon

LTR

ninja-Dsim-like11189 AUCCCACGUAUGUUGGCCGGAUUGUCG

1

1 transposon

LTR

invader1

11190 AGUGGCGCGUCGCGAGGCUAACCCGUG

1 no match

11191 UACAAUUCCAGCUCAACUCCCGAA

1

0 transposon

LTR

Quasimodo

11192 AUACCCUGGUAGUCCACGCCGUAAA

1 no match

11193 UCUUUGGACAGAAAUACACGGGUUGA

1

1 transposon

LINE

Cr1a

11194 GUGUCCGAUCAGACGAGAUGGCCAU

1

1 transposon

LINE

F

11195 CUAACUGUGAGGGAUCCUCAA

1 no match

11196 UGAACACUCAUAAGGCCCACGAAGC

1

0 transposon

LTR

flea

11197 UGAUAUCCUGAGCAAGUGCUCUCACCGA

1

0 transposon

DNAS

11198 UUAGAUGUCCUGGGCUGCACGCGCGC

10 ncRNA

11199 GUAGUGACGAAAAAUACAAUACAG

1 no match

11200 GCCCCCUGAUGAAGAAGAGAUGCCCAG

1

2 transposon

LTR

ninja-Dsim-like

11201 UCGGACCUAAGCCAUAAAUGUAACGCG

10 transposon

LTR

Quasimodo

11202 ACCAGAUCGAUACCGCCGCCCUGAU

1

0 coding generRNA

CG2184-RA¦Mlc2

11203 UCUGCAAUCAUUACCGAGCUGUCAA

111204 GCCUACCCGUCCGAACCAAACUCC

1 no match

0 transposon

LTR

gypsy811205 UCGAUCCUAGGAGAUGGCACCA

1 no match

11206 GUGGACAAAGACGGCUGCAAGCAUCC

1

0 coding gene

11207 CACCACAAGUGAUAAUUGAUUCCGGA

1

0 transposon

LINE

Cr1a

11208 CCCCAUCCAAAGCCACAGUACAGCGC

1

0 transposon

LTR

GATE

11209 UGCACAACUAACCGUGUGACGAAGGC

1

1 transposon

LTR

micropia11210 UCUCACCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)11211 GCCGAACGUAGUCUCUCGAGAGCGGU

12 transposon

LTR

invader1

11212 AAUGCCGCGUGAGUGAUGAAGGCCCU

1 no match

11213 UCCUAAAGGGUUCUGUAUUUCCGA

1 no match

11214 AGAGACUUAAAUAUCCCAUCAGUUA

1

0 transposonLow̲complexity

F-element

11215 ACCCCUGAACGCGCCCGAUCUCGUCC

1 no match

11216 UAUUACAUAGAUGUAGAUGGGUCG

111217 UGGAUACCGCAGCUAGGAAUAAUGGAA

1 no match

11218 ACGAACUAGAGCGACAUCGGGAA

1

0 transposon

LTR

roo

11219 GAUCCACUGAAGCUUAUCCUUUGCUU

10 ncRNA

11220 UGCGCGAAGAAGGAGAACGAGAAGGC

1

0 transposon

LINE

G6

11221 CGUAAAACAAUUCAAGAUCUGGCCGU

1

1 transposon

LTR

blood

11222 GUGGCUUUGAGAGGCGCCGUAGUUAUCC

1

2 no annotation

11223 AGCACUCUCAUCCAAUAGACGGACACAC

1

1 no annotation

11224 ACUCGCCGAAUCCCGGGGCCGGGGGAGC

1 no match

11225 ACCCACAGAGUACGGGGCUUACUGAAGUCA

1

2 transposon

LINEbaggins11226 UCUUGAAUCACCGAAUUGAAAUUGUA

1

0 no annotation

11227 GAAAGAAGACCCUGUUGAGCUUGACUCU

1

1 repeat11228 GGCUUCGAGAGGCGCCGUAGUUAA

1

2 no annotation

11229 UCCUUAACAAGAACGACGUUGUCCAC

1

0 transposon

LTR

diver211230 UGUGAAAAGAUCCCGUUUGAAUAUGAC

1

0 transposon

DNA

S

11231 GUCGAGAAGAAGAUGAAGCGCAACAA

1

0 transposon

LTR

ninja-Dsim-like11232 CCCCAAAAACCGUCUCAGUUCAGAU

1 no match

11233 UGCUCUCGAAUGCUUGCCCGGUAUU

1

2 transposon

LINER1-element11234 UCUUGUAGGUGAGUCUCGGUGAUCGAGUG

1

0 transposon

LINE

G2

11235 AACGGAGGCGCGCGAAGGUUGGCUCA

1 no match

11236 CGGACAGAGACGGCGCAUUUUCCAGU

1

0 transposon

LTR

McClintock

11237 UGUGAUUGUAUGAUUGUCCAGUGGU

1

1 transposon

LINE

G2

11238 CUGUAUCUAACUCGUCAUCAGUACGG

1

0 coding gene11239 UGAGACUACAACGGAUUGCGGACC

1 no match

11240 UGGAACAUUGCCGUGAACGCAGACAAA

111241 CCACCCCUGAAACGCGCCCGAUCUCGUUC

1 no match

11242 CAUUCCUGCGUAGUACGAGAGGAACCG

10 ncRNA

11243 UGAGUUAAAAGAAAAAAUUGAGAAAA

1

1 transposon

11244 CCAAUCCGCUGCGUUCGGGAGCCGGGAA

1

0 coding gene

CG9393-RA¦CG9393

11245 UGUCACGCGGGAGACCGGGGUUCAAU

1

0 ncRNAtRNA

11246 UGGGAACACCGCGUGUUGUUGGUCCU

1 no match

11247 AUUUAAAUAAUAUUAUGAGAAUA

10 ncRNArRNA

11248 GAUGUCCGGGGCUGCACGCGCGCUAC

1

1 ncRNArRNA

11249 GGCUUUGAGAGGCGCCGUAGUUU

1

1 no annotation

11250 CUGGCAAAGAAAAUUAAGAGUC

1

1 transposon

LTR

mdg3

11251 GCCGAAAAUACGACGACCCCAAGUAA

1 no match

11252 UGAAGAAAUAAUUGAAAUGAAGCCGA

1

1 transposon

LINEbaggins

11253 UCCGAAAACAUCUGAUGCACCUGU

1

0 transposon

LTR

Quasimodo

11254 CAGAAGAAAAACAAAGCGCCGUUGUCA

1 no match

11255 GUUGGGAACCCUAAUGGGACUGCCGGU

1 no match

11256 AGUCUAACACGUGCGCGAGUCGGGGUC

1 no match

11257 ACGGGAAACCUCACCCGGCUCGGACAC

1 no match

11258 UGGGACCACCGCGUGUUGUUGGCCU

1

1 ncRNA

11259 UACGAGGAUGUCCGAGCUUAUCACU

1

0 coding gene11260 ACUGAAUAAACGAAAUGGAUGACAC

1

0 transposon

LTR

invader411261 AAGACGAGAAGACCCUAUGGAGCUUU

1 no match

11262 UCUGCAUGAAGACGAUUCCGAAG

1

0 transposon

LINE

Circe

11263 GUAAUACAUCGGAACGUGCCCAAUCG

1 no match

11264 CGCCACAGAAUAAACUAAUAACGAG

1

2 transposon

LTR

frogger

11265 UAGAUCAGUGAAAUCAUCUUCCGGGA

1

0 transposon

LTR

micropia

11266 CAGACCUAUACAGAUUGGAACAU

1

0 transposon

LTR

McClintock

11267 UGCUACUCGAAUGUAUGCCCGAUAUAC

1 no match

11268 UCAUCUGUGGAGGGGAUCCUCAA

1 no match

11269 GUCUCAGAGAGCAAAUCGCCAUGU

1

0 transposon

LTR

gypsy311270 GUGUAAGUUACGAACCCUCUUCUUGC

1

0 transposon

LTR

opus

11271 UAAGAUUGGACCCAGUACACUGCCU

10 transposon

LINE

Doc

11272 AUGACAUACAGAACCAUGAAGGUGA

1

1 transposon

LTR

McClintock

11273 CCGGAUUACAAGAAGCCAUUCCA

1

0 transposon

LTR

gypsy311274 UAUUGUCCGACUACGGAAUGACCAUGAG

1

0 transposon

LINE

Cr1a

11275 AUCUCCUGUGAUAGGCAGAACACCCUG

1

0 repeat11276 CGCACUUUAAGCGUUCGUUGACGUUGA

1

0 transposon

LTR

HMS-Beagle

11277 UGCACUAAUAUAAGCCCUGACUUCCAA

1

2 transposon

LTR

G4

11278 UUGGGAAUGAUUGCGUUGAGAAA

1

0 transposon

LTR

mdg3

11279 GCCAAACUGAUGCGAUGGUAUUGUA

10 transposon

LINE

Doc2

11280 AUCCCCCAGGACUUGAUCGCAUCGA

1

2 transposon

LINE

G2

11281 UAGACAGAAAAUAAGGGACACGCCG

1 no match

11282 GCCCCCAAACGACGUCGGCGAUACCCUAA

1

1 transposon

LINE

Quasimodo

11283 CAACCAAAAAUGACAAGCGCGAAA

1

0 transposon

LINE

Doc4

11284 AAUUGACGGAAGGGCACCACCAGGAGU

10 ncRNA

11285 AAAAACCUGAAGAUGAUCCUGAGUCGCAU

1

2 transposon

CG4836-RA¦CG4836

Su(Ste)0 no annotation

0 transposonrRNA

LSU-rRNA̲Dme

CG1009-RA¦Psa
LINE

G
rRNA

LTR

mdg3

5SrRNA
CG6289-RA¦CG6289

trf

rRNA
LINE

Helena11286 ACCCAAAGAACAAAGACGAAACAC

1

0 no annotation

11287 ACCGAGAGAAGACUUUCACCCGAUGA

1

0 coding gene

11288 AGGAGCCGGGCGUGGAAUGCGAGUGCCU

1 no match

11289 GAGCUCGUUUGAUUUUGACCAGGAUU

1

0 transposon

LINE

X

11290 CACUAUUACACGAUAUACCUUGAG

1

0 transposon

LINE

Cr1a

11291 ACGGGGAAAACUUACCAGGUCCGAAC

1 no match

11292 AAAGAGAGUAAUUUUGGCCGUCACCU

1

1 transposon

LINE

Cr1a

11293 CCGAAGAAAACAAAGCCUCCGCCA

1

0 transposonLow̲complexity

F-element

11294 GCAUCUUCCAAAGAACGAUCGAUGA

1

0 transposon

LTR

gypsy211295 CAAAUUCCGAAAAUGCGAGUUCCU

1

0 transposon

LTR

Rt1c

11296 UGCCAUCUACAAUGUCGUCCUGGG

10 coding gene

CG30104-RA¦CG30104

11297 CUUGGACUACAUAUGGUUGAGGGUUGU

10 ncRNArRNA

11298 GUGAGGUCUCCGGACGUGAUCACUGUGU

11 ncRNA

rRNA

11299 UGUCUAAGUACACACGAAUUAAA

1

0 ncRNA

rRNA

11300 GUUUGACUGGGGCGGUACAUCUCU

1

0 ncRNA

rRNA

11301 CCACACUGGGACUGAGACACGGC

1 no match

11302 GGGUCGAUGAAGAACGCAGCAAACUG

10 ncRNArRNA

11303 AGUGUAUGGAGCGUCAAUAUUCUAGU

10 ncRNA

11304 AGCGUCGAACGAUUUCUGCCCACC

1

0 transposon

11305 AGCUCGAACAAGCCCAGCAAGAGAAU

1 no match

11306 AGAACCCUGACCUACGAGUCCGUCCAUCA

111307 ACCCUAGAACGCGCCCGAUCUCGUC

1 no match

11308 GGCUCAACUGUGAGGGAUCCUCAA

1 no match

11309 UGUUUCAUCGUUAGACGGCUCGGGCUCU

1 no match

11310 UGUUUCUUCGUUAGACGGCUCGGGC
11311 GGAUCAAGGGCAACGAGUUCCUCUGCCG12717-RA¦CG12717

rRNA
LTR

Quasimodo

1 coding gene

CG6255-RA¦CG6255

1

1 AT-chX

AT-chX-B

1

0 coding gene

11312 AAUCGAUGAGAUCAGGGCCUGGAGA

1

0 transposon

11313 CCCUACUGAUGAUGUGUUGUUGC

1 no match

11314 ACCCUACUGAUGAUGUGUCUACGACC

1 no match

11315 CAGAUCGACAAAGUACGAUGGGGA

1

1 no annotation

11316 UAUUGCUUGUGGAACGUCGUUGC

1

0 no annotation

11317 GCAACGAUACGUAGCCGACCUGAGAGGG

1 no match

11318 AUGGCUCUUUCAGUCGCUUCCCGGGA

1

1 ncRNA

11319 GCAUUUCAAAAACGCGAGUGGCAUCC

1

0 transposon

11320 UGUUUCAUCGUUAGACGGCUCUGG

1

1 AT-chX

AT-chX-B

11321 UAUUUCAUCGUUAGACGGCUCGGC

1

2 AT-chX

AT-chX-B

11322 CUCGACCGUGGCAACUCGAACCGAGGC

1

1 repeattrf

11323 UAUUGGAGAUAGAGGCCCUUGGA

1

0 coding gene

CG7138-RA¦r2d2

11324 GUCUCGAGAAUACCGAUCCAGUGG

1

0 no annotation

11325 GGUCCUGAGAGAUGGGCCGAGGGA

1 no match

11326 CAACCAGAGAUCUAGAGGGCCCAAGAAA

1

0 no annotation

11327 UGCUCAUUCCGAACAUAAAUUGACAA

1

0 transposon

LINE

Doc

11328 GCUGAUGAUACCGCGAUACUCAGUCGC

1

0 transposon

LINE

Doc

11329 AAAUUCCGUAAAACGAAGCCCAAAAGUU

1 no match

11330 CCCUUGAACCCAGGAGCUCUAGACC

1 no match

11331 UGGGGAUGACCAGCAGGAGGUGGAGA

111332 GAGCCCAUGACCCUUGACAACAUCGU

1 no match

11333 UUGACGGAAGGGCACCACCAGGAGU

111334 GGGUUCCGGGGGGGAGUAUGGUUGCA

1 no match

11335 CAACGAGUUCCUCUGCCGCGUGCCUAU

1

0 no annotation

11336 CUGCCGAACGUAGACUGGUCGCGAGU

1

1 transposon

LTR

invader1

11337 UCCGACAGAAGCCCCGCUACCUCC

1

0 transposonLow̲complexity

F-element

11338 CUAAACGUAUUAACAGACACUAAA

1

0 transposonDNAtransib2

11339 CGCAAAAGUUGACCGGACUUGAU

1

1 ncRNArRNA

11340 CAGGCAAGGUGUUGUAAGUGGUUGA

1

0 ncRNArRNA

11341 CGCGGAAUGAAGCAGUUACGUUUGGA

1

0 coding gene

CG18449-RA¦CG18449

11342 AGCGUUGGAUUGUUCACCCAUGCAAGG

1

0 ncRNArRNA

11343 AAUAGACCUCUGUUCUGCUUUCAUUG

12 ncRNA

11344 UCCAAGAACAACAACAACCAGAGCAA

1

0 transposon

Unknown

RR50960

11345 CUAAUACAUAUCGAUCAUUACGGCCCA

1

0 transposon

LTR

flea

11346 CACACAACAAAACUAUCACCCAGCUGU

1

1 transposonLow̲complexity

F-element

11347 AGAAACCGAACUUCAUACAGAUGCC

1

0 transposon

LTR

flea

11348 UGCGGAACAGGGCGAGGACUCCAAUG

1

0 coding gene11349 GCGUAACAUGGCCACACUGUCUCCUCCCGA

1 no match

11350 UAACCAGAGAUCUAGAGGGCCCAA

1

1 no annotation

11351 GCGAUCCACUGAAGCUUAUCCUUU

10 ncRNA

11352 GCCUCUCAAAACGAAACCCGAUCAGA

1

0 transposon

LTR

gypsy

11353 ACUCGCCGAAUCCCGGGGUCGAGGGAGC

1 no match

11354 AAUGCUAACAAGGCGCCGCCCGUGA

1

1 transposon

LINE

G6

11355 AAACGUGGAUGCUCGCUGUUGGCCUUU

1 no match

11356 ACCACCCUGAUCGCGCCCGAUCUCGU

1 no match

11357 UUGGGAACACCGCGUGUUGUUGGCC

10 ncRNA

11358 CAAGAUAGGAAGGAAGAGUUAAAU

1

1 transposonDNAtransib4

11359 CGUACUCACGCACUUUCCAUCGAUG

1

0 transposon

LINE

Circe

11360 CACAGCAACAUUGUCUGCAAGGGAC

1

0 transposon

LTR

Tirant11361 CACGCAGUUACCGACCGUUGUGUCAU

1

0 transposon

LINE

Quasimodo

11362 CCGAUACAUAGAGCAACUUACACCAAC

1

1 transposonLow̲complexity

F-element

11363 AUUGUAGACGGUCUUACGGGA

1

0 transposon

DNAS

11364 ACAUUCAUAACCGAGCGACUUUUUAA

12 transposon

LTR

GATE

11365 AACAUUCAUAACCGAGCGACUGUUCAA

1

1 transposon

LTR

GATE

11366 CCAUGGUUGCAACGGGUAACGGGGAAU

10 ncRNA

11367 CUGAGGCGCUCGGUGUCGGUGAAGG

1 no match

11368 GAUUCCUUGAGGAGCUGGAACCUGGU

1

CG40947-RA¦CG40947
LINE

G

rRNA
LTR

invader3

0 coding gene

CG15262-RA¦CG15262

0 ncRNArRNA

0 transposonrRNA

CG3980-RB¦CG3980

rRNA

5SrRNA

rRNA
LINE

G2

11369 UGAUAGACCUAUGCAGGGUUCCGAAUG

111370 AGCCUGAGAGGUGAUGCGUAGCCGA

1 no match

0 no annotation

11371 UCCUGAAAGUAGUUGGUGGGCACGUGG

111372 GAGUUCGAGACUCUUUUCCCGCUCC

1 no match

11373 CUAAACCAUUCGUAGACGACCUGCU

1 no match

11374 GGAUACGACGACGUAGACCAAG

1 no match

11375 CUUGGCGUUAAGAGGCGAUGAAGGAC

1 no match

11376 CACGACCCCCAGCUACGUGGCCUUC

1 no match

11377 AAACGAGAAUAUACACAGGGGCUUA

1

1 transposon

11378 ACCGGAGAAGACGUUGAAUGGAUC

1

0 no annotation

11379 UGCACUAAUAGUAAGCCUGACGUCCGA

1 no match

11380 UCUCUAAAUCUAUGGGUGGUGGUGCAUG

11 ncRNA

11381 UUCCGAUAACGAACGAGACUCAAAU

1

0 ncRNA

11382 UCCGAAGAUAACGAGGAGCAGAGCUGAU

1

1 transposon

LTR

11383 UUCGAGAACAAACGACACUGUUCGGC

1

1 transposon

LINE

G2

11384 CAACUGUGAGGUCAACUGUGAGGUCAA

1 no match

11385 CAGCUGCCCGAAGUGCGGCGCGCCGGCCA

1 no match

11386 GUAGUCGAGAUCAGCGUGCCGUGUUA

1 no match

11387 UCAGCUACGGCAAUGCAGCUCGAGCCG

1

0 transposon

LTR

diver211388 UCCGAAGAUAACGAGGAGCAGAGGC

1

2 transposon

LTR

11389 GAUUCCGGAGAGGGAGCCUGGGA

1

1 ncRNA

11390 UAGAAAGUGACCCUGUUGAUAAAUCGA

1

0 transposon

LTR

Idefix11391 CAGGAAUGUCUAUCCGAAAGACGAGU

1

0 transposon

LTR

G4

11392 GCCAGGCCCGUAUAACGUUAAUGA

1

0 ncRNA

11393 GGAACCAACCCAAAGAGUACUCACCGA

1

0 transposon

LINE

Doc2

11394 CCGUGUGGCGAGGAGUGCGGUUCUUU

1 no match

11395 GCCUGACCGAGUAGUGUAGUGGGUG

1 no match

11396 UAAUUGCCCGGGAUCUCGGUAGUGA

1

0 transposon

LTR

diver211397 ACAUGCCCUGGACCAACUAUACCACCA

1

1 coding gene

11398 UUGUAGGUGUACUGACCCAGUCGGA

1

0 transposon

11399 GCCCGAUGUCCGCGAGAUUUGCCGC

1 no match

11400 CAUGCAAUUAAAACAUGAACCUUAUG

10 ncRNA

11401 CACGAUUGAGAACGGCUACCUGGC

10 coding gene

11402 AUGCAUAGAUAAAGGAGACGCACCGUU

1

1 transposon

11403 AUGGGCUAGAAGAGCAUGACAUAU

1

0 ncRNA

11404 UUACUGACGAAUUUAGUUACAAGCA

1

0 no annotation

11405 CAACGAGUCCUCUGCCGCGUGCCUA

1 no match

11406 AGCAGGACGGUGGCCAUGGAAGU

1

2 ncRNA

11407 AAAACCUGAUGAUGAUCCUGAGUCGC

1

1 transposon

LINE

Helena11408 UACAAGCAAGACCACCACACCCGA

1

0 transposon

LTR

gypsy1211409 AGCGAAUGAUUAGAGGCCUUAGG

10 ncRNA

11410 AAAUAAUCAAAGACAAUCUCAGCCCGA

1

0 transposon

11411 UGUUUCAUCGUUAGACGGCUCGGGAA

1

2 AT-chX

11412 ACGCCCGGUAGCACGAGUCCAUGCGC

10 transposon

LTR

ninja-Dsim-like

11413 ACUCGCCGAAUUCCGGGGCCGAGGGAGCG

1 no match

11414 UAGACUAUGAAGAGACAUUUGCUCCU

1

0 transposon

LINE

Cr1a

11415 AGCUCUUCUAUACAACUCCGUCUUA

1

0 transposon

LINE

Doc

11416 ACCCUGAUGGAAGACCGAAACAGUUCU

1

0 ncRNA

11417 UACGACGAGAACGAGAUCAGCGA

1

1 transposon

11418 AGCAAACCAAUCCCACAAACCCG

1 no match

11419 ACUUACCAGGUCCGAACAUAA

1

0 ncRNA

11420 UAGGAACGAAAGAGGCGAGGACA

1

0 coding gene

11421 UUCGAUCAGAAUUGAUUUCGGCCCG

1

0 transposon

11422 CGAUUGAAUUAUUUAGUGAGGUCUCCG

10 ncRNA

11423 AAAACCCUGAAGAUGAUCCUGAGUCGC

1

2 transposon

11424 GAGGUGUCCCAAGGCCAGCUCAGUGC

10 ncRNA

11425 GCGUAUAACAACUACUUCUCGGUGAA

1

0 transposon

LTR

accord11426 GCAUUACGAGACUCAAUGGCACGUCACAA

1 no match

11427 ACGAGCGCACGUGUUAGGACCCGUAAG

1 no match

11428 UAAACUCACAAUUAGGUGGGUCCCG

1

0 transposon

LINEbaggins

11429 CCCAAUUGUGUUUCGUCCUAAAGA

1

0 transposonLow̲complexity

F-element

11430 GAACCUUGAAGACUGAAGUGGGGAAG

1 no match

11431 GUGCGAAGAGCGAUGAUACCGAAGA

1

0 transposon

LTR

Dm88

11432 AUCGAUAUUAUCCCAGCACUACGAAG

1

0 no annotation

11433 AACUCCAGCAGAGACCGUACCCGAAAC

1 no match

11434 CAAGACAGAAAAAUACCUGCGCAGGUGA

1

0 transposon

LINE

RR4978311435 GCCGAACGUAGUCUCUCAAGAGCGAG

1

1 transposon

LTR

invader1

11436 GAGGACGAGGAUGUUAUGCCGCCGACG

10 coding gene

11437 CAAUCCGAUACAUUUCACGCCGACAUC

1

0 transposon

LINE

INE-1

11438 GCAGCCGAGCUCAUUUUCCCUUG

1

1 transposon

LTR

copia

11439 UUGACUAUUAUUUGGAGAACCACA

1

0 transposon

LTR

opus

11440 GUAGGCAAUAUCCCAAGGUGCAAGA

1

0 transposon

LTR

gypsy311441 GCUUCCCGGGAAACCAAAGCUUUUGGG

10 ncRNA

11442 UCCUGAUGACUCUUCGACAUAUAUA

1

0 transposon

11443 UGUUUCAUCGUUAGACGGCUCGGGCAA

1

2 AT-chX

AT-chX-B

11444 AUAUGGCAAAUGUGAGAUGCAGUG

10 ncRNArRNA

11445 AGGGGCGAAAGACUAAUCGAACCAUCU

1

1 ncRNArRNA

11446 AUAGCUAAUUAACACAAUCCCGGG

10 ncRNArRNA

11447 ACAUGAAGCGAACCCGGGGAACUGAAA

1 no match

11448 CCAUGGACCCCGUGGAGAAGGCUCUGC

1

0 coding gene11449 UCAACUUUAACCCAAGAGACGUGACGA

1

0 transposonDNAtransib4

11450 CGCCGAAUCCCGGGGCCGAGGGAGCG

1 no match

11451 AACCAAGAUUAUCAACCCGUGUUA

11 transposon

LINE

Cr1a

0 Su(Ste)

Su(Ste)

LINE

Doc3

rRNA
rRNA
297

297
rRNA

rRNA

CG33106-RA¦mask
LINE

bagginsrRNA
CG14446-RA¦CG14446

LTR

flea
rRNA

rRNA

rRNA
Low̲complexity

F-element
AT-chX-BrRNA
LTR

froggerrRNA
CG40271-RA¦CG40271

LINE

Cr1a
rRNA

LINE

HelenarRNA

CG33935-RB¦mei-217

rRNA
LTR

Dm88

CG4264-RA¦Hsc70-4

11452 ACUGGGAGAAUAAACCCGAUGGACCCAAUG

1 no match

11453 GGAUAGUCCCGAAGAAACCUAAAACC

111454 UGCCGGUUCGAGUCCGGCCCCGCGCACC

1 no match

11455 AAGGGAACGGGCUUGGCGGAAUCA

1 no match

11456 GAGUAACCGAUCGUUCAAGUAUUGCCA
11457 CACCAAGAUUAUCAACUCGUGUUA

2 transposon

LTR

opus

1

0 transposon

LTR

micropia

1

0 transposon

LINE

Cr1a

11458 AACCAUUUACAAAAUGUAUUCCGACCA

1

1 transposon

LINE

Doc

11459 UACUUGUUCCCCGGAUAGUUUAGUUUAC

1 no match

11460 CAGUACGAUCCGUCUGCAAACUUCC

1

0 transposon

LTR

opus

11461 UCAACGCAUCAGAGGUGAUUUUUGA

1

0 transposon

LTR

rooA

11462 UGGGUGCGAGAGGCCCUGGGUUC

12 ncRNA

11463 GAAGAUAUGAAACCGACUCAGGCAGU

1

0 transposon

11464 UCAAGAAUAACAGGACCAUCCAA

1

0 no annotation

11465 UGCGCUUGUGACGGCCCGUGAAAA

1 no match

11466 AGAGAAUACCAAGGCGCUUGAGAGA

1 no match

11467 CGCCCCUGGACGACCCACGUCCCUAUG

1 no match

11468 CAGACUCCGACGUUGGCACCAGCAGCGCCUC

1 no match

11469 CCGAAAGAAAGGGCAGACUAAUCCGU

1

0 transposon

11470 CGCAGCGAUUUGCCAGAGAUCAU

1

2 coding gene

11471 ACGACGAGAACGAGAUCAGCGCGA

1

0 transposon

11472 GAGGUUCGAAGGCGAUCAGAUACC

1

0 ncRNA

11473 AGGCGUAGUCGAUGGAUAACCCAGUUG

1 no match

11474 AGUUGGUGAGCGAUUUGUCUGGUU

1 no match

11475 CGGCUCAUCUCAUCCUGGGGGCUGU

1 no match

11476 CGAACCGAUUAAAAUUAAAGUGCA

1 no match

11477 UCCAACGAGAGAGCGGAGAGCCAGCGU

10 transposon

11478 UCCAGGCCCAUCUGGUUGAACGUGU

1

0 Su(Ste)

Su(Ste)11479 GAGGCGUUUGGAAGGCGGGCGA

1

0 coding gene

CG4434-RA¦CG4434

11480 AAACCCAGAUUUGAGACGAAAGACCGAA

1

0 coding gene

11481 UGUUAAAUUACAGAAGGAAUUCCUA

1

0 transposon

11482 CGUCUCAUAUGCGCACCCCACACACUU

1 no match

11483 UUGAACGUGUCCUGAAAGUAGUUGGUG

111484 UACAAUGAUCUAUCGGGUUUUUUCU

1 no match

11485 AUCUGAAGAGGUCGAUCCCAGCGUCA
11486 AGUUGGUGGAGCGAUUUGUCUGGUU

tRNA
LTR

Max

LTR

ninja-Dsim-like
CG3338-RA¦CG3338

LTR

froggerrRNA

Unknown

RR50960

CG17924-RA¦Acp95EF
LTR

invader40 Su(Ste)

Su(Ste)1

0 coding gene

CG2093-RA¦CG2093

12 ncRNA

11487 UGUGAAAAGAUCCCGUUUGAAUAUGA

1

0 transposon

11488 AACGCCUGGGACAUGCCAAGUUGGUGCCC

12 coding gene

11489 GUGGCAUGUUUCCGGAUUCCCGC

10 ncRNA

11490 ACAACAUCCAGCGCUACGACUCC

1

0 transposon

LINE

Porto1

11491 AAUGGCACCAUGGACGAAUAUUGCAAC

1

0 transposon

LTR

HMS-Beagle

11492 AAGCCAGUUACCGAAGCUGCGGAUU

1 no match

11493 CUCGCCGAAUCCCGGGCCGAGGAGUC

1 no match

11494 ACCGAAGAAAACGAAGCCUCCGC

1

1 transposonLow̲complexity

F-element

11495 UGAAAAACGAGACGGAUGCGAUACC

1

0 coding gene

CG1763-RA¦nod

11496 GCCUCAACUGUGAGGGGAUCCUCAA

1 no match

11497 CAAUCGACGUGACCCAAAUGAAGCAUA

1

0 coding gene

CG11334-RA¦CG11334

11498 GAGCGCACGUGUUAGGACCCGUAA

1 no match

11499 ACAUACAUGAUGGCGGCCAACUAAA

111500 UGGUUCGAUUCUAGGAGAUGGCACCA

1 no match

11501 AGACGACGAAAUCUACAGACUCAGCGU
11502 AAAGCCAUGUGACGACGAGGCCCGUGC

rRNA
DNA

S
CG31538-RA¦CG31538
alphagamma-element

0 transposon

LTR

frogger

1

1 transposon

LINE

G2

1

0 coding gene

11503 GGCACAAUUACCAGAAGAUGUUGACGC

1

0 transposon

11504 GGAACCGGGCGGGAAGUUGGGGGGACC

1 no match

11505 GGUGCCAGGCCCGUAUAACGUUAAUGAU

1

0 ncRNA

11506 AACCCGUGCAUACUUUCGACUCCGU

1

0 transposonLINEaccord2

11507 ACCGAAUUAAUCGCGAGGCUGC

1

0 transposon

LTR

mdg3

11508 UCUCAUCGUCGUAGAACAACCCCGA

1

1 Su(Ste)

11509 UGUCGUUGACGUCUAACCGAGGGCCGU

1 no match

11510 UUGGGAACACCGCGUGUUGUUGGUCU

1

1 ncRNA

11511 GACGUAGAAAAACUUGGAGACGGC

10 transposon

LTR

diver211512 UACCAAACGAAGUCCUACCAUAUGA

1

0 transposon

LTR

flea

11513 ACUACGACGACUCCGACUCUGACAGC

1

0 no annotation

11514 UGAAGCGAACCCGGUGAACUGAA

1 no match

11515 GCAGUCGUGGCCGAGCGGUUAAGGCUCU

1 no match

11516 UUCCCGUGGAUAACGUGCCCGUGU

10 coding gene

11517 AAAAGAAACGAAGACAAGAACAGCUCGA

1

0 transposon

11518 CGGGGCGUUCUAUAUAGUUAUGUAUG

1

1 ncRNA

11519 UACAUCGAAAAGCGAGUUGACGUGUG

1

0 transposon

LTR

Max

11520 CAACAAAUCAUGAAAGAGCGCGA

1

0 transposon

LINE

F

11521 AAGCCGGAGGAAGGUGUGGAUGACG

1 no match

11522 AUUCACACUCAAGAUGAUCGUGGCCA

1

1 transposon

LTR

11523 ACGCUGCCGGAGAGGGUGAUGGCCCCG

1 no match

11524 AACUUCUUAGAGGGACAAGUGGC

1 no match

11525 GAGUACUUCACCCAGACACUGGACG

1

1 Su(Ste)

11526 UGUGCUAGAAGACGAUUUUCGGGGU

1

1 transposon

11527 UGAGAUAUGCUAGCAGACCGCUCC

1

0 no annotation

11528 GAGUCCAAGAGAUUUGCCCCCGAGGU

1

1 coding gene

11529 UGAAGAUGAAAAUACUGUUAACCGA

1

0 no annotation

11530 ACCACAAUCAUCACCAGACGGCCC

10 coding gene

11531 AAGUUCAAUAUCCCAAAUUCGGCGUGA

1

0 no annotation

11532 UUCAAGGUUACCCAGGAUGCUGUG

1 no match

11533 GCAUUCAUAACGAGAUUGCGCAUUGCA

111534 GGCACGAGACCGAUAGUCAACAAGUACC

1 no match

0 no annotation

CG5762-RA¦CG5762
LTR

roo
rRNA

Su(Ste)5SrRNACG31025-RA¦CG31025
LTR

invader6
rRNA

297

Su(Ste)LINE

Cr1aCG18743-RA¦Hsp70Ab
CG10719-RA¦brat

11535 UAACUAAGAACCGUGAGAUAUCGCU

111536 ACCCUGAACGCGCCCGAUCUCGCC

1 no match

0 no annotation

11537 GCUGAGAAGACGGUCGAACUUGACUU

1 no match

11538 UCGGCCCUAACCCUUCUGUUGUGU

12 transposon

LINEbaggins

11539 CUUAGACAUCCAAUCUGUUGGCCA

1

1 transposon

LINE

F

11540 CACCCUGAACGCGCCGAUCUCGU

1 no match

11541 AAAAGGGCAAAUGCUGACUUGAUCU

111542 CAAGCUAGACUAUGUAUCCCCCGGGUA

1 no match

11543 ACAACGCCAAGCACCCGAUUGUGAUAA

1

1 transposon

11544 GAGGCACUGAAACCAUCCGGGCGAG

1

0 coding gene

CG10616-RA¦CG10616

11545 UUGGGAACACCGCGUGUUGUUGCCCU

1

1 ncRNA

5SrRNA

11546 UGCAAUCGAAAACGGGGAAAACUUCAUC

1 no match

11547 GAGAAUCCGAGAACUUUGUUAGAAAA

1

0 transposon

LTR

HMS-Beagle

11548 AAGCCCGAAACAACGACUCGGUCGACA

1

1 transposon

LTR

gtwin

11549 ACUGAAUAACGAAUGGAUGAC

1 no match

11550 UGCACCGAAAAUAUUUGCGAUGAAA

111551 ACCCGGCCCGGACACGGACAGGAUUGA

1 no match

11552 CACGCUGAGAACAUAAGAAAUCUAAA

111553 UGUUAUCGUAAGGCGACAUGGGUGCA

1 no match

11554 UUUGCGAGAAAUUCGGUCACCGAGU

111555 AGUCGGUCCUGAGAGAUGGGCGAGCGCC

1 no match

11556 CGCUCACAGACUACCUAAGAGGCGC

111557 UCGCCGCCCCGGGGCCGAGGGAG

1 no match

11558 CCUUCCAGCAAGGACGAUUGAUGCUAC

1 no match

11559 UGACGCGAUGUGAUUUCUGCCCAGUGCU

111560 UAGAGCGUCCGACGAAUACCCUGGGGGG

1 no match

11561 CAAACCAUCCCAACCAAACCCGUCAA

1 no match

11562 UCAUCGAGAUAUUAAGGACUGGGGA

111563 ACCCUGAACGCGCCCCGGAUCGUCGU

1 no match

11564 CCAAGGUGAAGAGUCUCUAGU

10 ncRNA

11565 UUGUAGAUCAAUCAUAUCACCGUGU

1

0 transposon

11566 AAAGCACCGUUUCCCGUCCGAUCAAC

1 no match

11567 CCGAACUUGAGACCACAGCCGCU

1

0 no annotation

11568 GGGGACUGAGGAGCGCAUUUCA

1

1 transposon

11569 CACCAGGAGUGGAGCCUGCGGCUUAAU

10 ncRNA

11570 AACCAAGCUAGAGUACAGAUCGA

1

0 transposon

11571 ACGGGAAAACUUACCAGGUCCGUAAC

1 no match

11572 CGGUGACGGUUCCAAAGUUUAGC

111573 GAGCGUAGUCGAUGGGAAACGGGUUAA

1 no match

11574 GCCCGAUGAACCUGAAUAUCCGUUAUG

10 ncRNA

11575 AAAGAGAGUAAUUUUGGCCGUCAA

1

0 transposon

DNA11576 AAGAGGGCGUGAAACCGUUAAGGU

1 no match

11577 ACCCCGAAAAUAAUUAAUAAACCCGG

1

0 transposon

LTR

invader3

11578 UCGAAACUCACUAACCUGCAAUUUGA

1

0 transposon

LINE

Rt1b

11579 AUCAAUCGCUGAUGAGACACCGGG

1

0 transposon

LTR

accord11580 CCAAAGCUUUGGGCUCCGGGGGA

1 no match

11581 UAUCCUGAGAAUCGAUUCGCAAGAAG

1

0 transposon

LINE

Cr1a

11582 UCCGAUGUACUAUCUGCCAAUCUC

1

0 transposon

LINE

Cr1a

11583 GGCGGUGGCGGCGGCGGCGGGGGC

12 transposon

LINE

R1

11584 UUUCUUGAAGAUGGCCCACAUAAAA

1 no match

11585 GGAUCUCGACUUGUGACGCCAAAG

1

0 transposon

LINE

Doc

11586 AAAAACCUGAAGAUUAUCCUGAGUCGC

1

2 transposon

LINE

Helena11587 GUCGCGAGAUCUACCAACACUAACCA

1 no match

11588 GCCCCGUACUCUGUGGUGACCAACA

1

0 transposon

LINEbaggins

11589 UUGACCUGUAUUCGGAUAAUGGAAC

1

1 transposon

LTR

3S18

11590 UUAACAACGACAGGGGUACGUCAUU

1

0 transposon

LINE

Rt1b

11591 GCGGGACUUACGGGGAGAUGCUCAAGA

1

1 coding gene

CG31793-RA¦CG31793

11592 AUACUUGUUCGAGCGAACAGUGGU

10 ncRNA

rRNA

11593 UUCUAGUCGUCGUGGGUUCGAGUCCCA

1 no match

11594 GCUAGUUCCAAAAAAAUCAUUACCGA

1

1 transposon

11595 GGGUUCCGGGGAUCGAA

1

1 no annotation

11596 ACCAACGGGAUACCUCAUACUCGAGUAA

111597 CGGAAUGGAAUCGAGCGCUGAGUAG

111598 GAGGAAUUUGAGCUGCGUUGACGC

0 ncRNArRNA
LTR

2 repeat

3S18

trf

0 transposon

LINE

HeT-A

1 transposon

LTR

Dm88

1 transposon

LINE

Doc4

2 ncRNA

0 transposon

rRNA

LTR

blood
rRNA

LINE

Cr1a

LTR

flea
rRNA

LINE

0 coding genejockeyCG11807-RA¦CG11807
rRNA
1360

DNA

NOF

0 transposon

LTR

micropia

0 transposon

LINE

X

1

0 transposon

LTR

ninja-Dsim-like

11599 CGAGUCUAGAGUUCCCAUCUGCAAGGGC

10 Su(Ste)

11600 GAGAUAGAUACAACUCACCCAGGGGGC

10 transposon

11601 AACGGGAAAACUUACCAGGUCCG

1

1 ncRNA

11602 CCAAAAGAUAAAACGUUUACGAGCA

1 no match

11603 GAGAUAUGAAACCGACUCAGGCAG

1

1 transposon

11604 GACCUCAUUCUCCGAGCCCGUCGU

1

0 no annotation

11605 UAAUCCUUUAUAAUCCGAUCGUA

111606 UGAGAGACAAAUUAGAUUUAAACA

111607 GUUGAAACUGAAGCACGAAUUGUC

Su(Ste)
LINE

BS
rRNA

LTR

Max

0 transposon

LTR

ninja-Dsim-like

0 transposon

LINE

G

1

0 transposon

LTR

Dm88

11608 CGAAAAUGCAGACCUAUUGUCAUCC

1

0 transposon

LTR

flea

11609 CGGCGGGGAUGGAGCGGUAUGA

1

0 no annotation

11610 CCACCUGAACGCGCCCGAUCUCGUC

1 no match

11611 AACUCUAAGCGUUGGAUCACUCGGUU

12 ncRNA

11612 UUGAAUUAUUUAGUGAGGCCUCCGGA

1

0 ncRNA

11613 UUCAGGGGGAUCUUUGAGUGAUGAAU

1

1 transposon

LINE11614 CGCACACUCCAACCGCCUUCAGCA

1

0 transposon

DNA11615 CAAGCGAGUGGACUGGGCCAGGCA

1

0 transposon

LTR

ninja-Dsim-like

11616 ACGGAACCGCUAGCAGAUCGCGAAU

1

1 transposon

LTR

opus

11617 UCCAAAGAAGAUCAAUGGUGCGAGU

1

0 transposon

LINE

INE-1

rRNA
rRNA
baggins1360

11618 GAGCGUCCGACGAAUACCCUGGG

1 no match

11619 GGGCAAAUAGACAAUUUGGAUGGC

1

0 transposon

LTR

HMS-Beagle

11620 GAAGAUUUCAUCGCGUUGACACA

1

0 transposon

LTR

micropia11621 AGAUUCCGGAGAGGGAGCCUGAGAA

1

1 ncRNA

11622 GGGCCCGGGUGGAGCCGCCGCAGGUGC

1 no match

11623 UCAUGCGAGGCGAACCGGGUGAACUGA

1 no match

11624 CAGACAGAGAUGGUGCAUUUUCAU

1

1 transposon

11625 GAUUGCGGACCGGAGAAGACGUUGA

1

0 no annotation

11626 CAGGCCCAUCUGGUUGAACGUGUCCU

1

0 Su(Ste)11627 CACGCAUUUACGCGAUUCACCGGACGU

1

0 transposon

LTR

diver

11628 UGAGCUGAGAGAGAUAUCGGUCC

1

0 transposon

LTR

opus

11629 GAAGCAAUCACCGAGAGCAUCAA

1

0 transposon

LINE

Rt1b

11630 AUGGGUCAGUCGGUCCUGAGAGAUGGGC

1 no match

11631 CCCUACUGAUGAUGUGUUGUUGCC

1 no match

11632 AUAAAUAAAAGGUGACCGGCAACGAC

1

0 no annotation

11633 AGGUAGGGAGUUUGACUGGGGCGGU

10 ncRNA

11634 AAAAGGUCCUCAACUGUGAGGCAA

1 no match

11635 ACAACCUCCACGUUCGCUGAUGAUA

1

0 transposon

LINE

Doc

11636 UCCUAUGAGGCUACGGCAUGGGG

10 transposon

LINE

Cr1a

11637 GGUGAAAUUCUUGGACCGUCGU

10 ncRNA

11638 AUGCCAAUCACGCCGUUUGAACCC

1

0 transposon

Simple̲repeat

I11639 GCAUUUAUGAGGUUGAGGUAGUACCCGA

1

1 transposon

LINE

G2

11640 GCUCUCGAAUGUAUGCCCGAUAUACG

1

0 transposon

LINER1-element11641 CACGGGAAAACUUACCAGGUCCGAG

1

1 ncRNArRNA

11642 AAGAGGGACGCCGGGGGCAUUCGU

1 no match

11643 GCGAGAAGCACGAGUUCUUCAUGG

1

0 coding gene

CG7228-RC¦pes

11644 AACUUCGGGAUAAGGAUUGGCUCUGAA

1

0 ncRNA

11645 CACAGAGUACGGGGCUUACUGAAGUCAU

1

1 transposon

11646 GGUAGGGAGUUUGACUGGGGCGGUAAA

1

1 ncRNArRNA

11647 AAGGGCAAAUGCUGACUUGAUCUCGGU

10 repeat

LSU-rRNA̲Dme

11648 GGUCCAACUGUGAGGGGAUCCUCAA

1 no match

11649 UCUCAUCGUCGUAGAACAAGCCCGAUUU

1 no match

11650 CACGAUGAUCGAUGACGAACUACGAAG

111651 GCAUCCUCAACUGUGAUGGGAUCCUCAA

1 no match

11652 UCCAAUGAAGACGUUCAUUUCGGA

111653 AACGGGAUGGAAGUGACGCAGUU

1 no match

11654 GAGGUCUCCGGACGUGAUCACUGUGU

111655 AGGAUCUUCAACCUGUGAGGGGGAUCCUCAA

1 no match

11656 GACUAGCUGGCCGAGUAUCUGAUGU

1

1 Su(Ste)11657 UAGAUUGGACAGCCUCUGUAGUU

1

0 transposon

11658 UACGGGUAGUACAACUUACAAUUGUGG

10 ncRNA

11659 AGAUGUCCUGGGCUGCACGCGCGCU

10 ncRNA

11660 ACGAGAUGUCCAGGGCGUGCACA

1

0 transposon

11661 CGUGCUCAUCCUGCUGGCCGGACGCCAC

1

0 coding gene

CG11522-RA¦RpL6

11662 GCCCGGCUACCUCUCGGUAGAGCAUGA

1 no match

11663 GCAACAGGCAUACUGGGACUGGGCAGG

1

1 coding gene

CG10126-RA¦CG10126

11664 ACGUACCUUGAGCAUAUAUGCUGUGACCC

10 ncRNArRNA

11665 AAGGAGUCUAACACUUGCGCGAGUC

1 no match

11666 GCCGAAUCCCGGGGGCCGAGGGAGCGAG

1 no match

11667 GCUUUAAUCACGAGCAAUGCGGUGACC

1

1 no annotation

11668 CUACCGCAAGGCCGAGAAUGUGGAGA

1

0 coding gene

11669 UAGAUCAGUCGAACAUUGUACUCUG

1

1 repeat11670 CUGACUUGUAUUCGGACAACGGAAC

1

1 transposon

11671 ACCCCGCGCGCUCCCUCUCGCCC

1 no match

11672 GAAAGAACAAAAAGAGGACUUCGAG

1

0 no annotation

11673 CUGGAAUGGCAGUGGUUACUGGG

10 coding gene

11674 ACACCUGACAGAUACCCGAUGCAAGAUC

1

1 transposon

11675 GCAGAGACCGUACCCGAAACCGACACA

1 no match

11676 UGCGUACAGAUCGAGUCAGAGAAGGAG

1 no match

11677 GACGGGAAAACUUACCAGGUCCGAA

1

1 ncRNArRNA

11678 GCGAGAUGAGCUACACGGGUCGUGGU

10 coding gene

CG14801-RA¦CG14801

11679 UGCCUCAACAUUUGGUGACCUCGACG

1

0 no annotation

11680 UUCAUCGCUGGAGGACGCCCGGGC

10 transposon

LINER1-element11681 UGCACUAAUAUAAGCCAUGACGUCCGA

1

0 transposon

LTR

G4

11682 UGUAACUACCGAAGGCAUAAAGCCCAA

1

0 transposon

LTR

Idefix11683 CAUUAACGUAAGGGGAGUACUUGG

1

0 transposon

LINE

G2

11684 AUGGAACGAAAUUGGCCUGAUUAGCGG

1

1 transposon

LTR

GATE

11685 UUAAAGGUUACCCCAGGAUGCUGU

1

1 repeat11686 UGAACAUCGAGAAUACUGCACAGC

1

0 transposon

LINE

Doc

11687 GGGCAAAUGACAAUUUGGAUGGC

1 no match

11688 ACCAAGAUCAUCAACCCGUGUUUA

1

1 transposon

LINE

Cr1a

11689 AAAUACAUGCCGACGGGCGCUGACCCCC

1 no match

11690 UAAUGACCAGCGCUAACGAUCCCU

111691 AAACUGAAUAAAACGAAAUGGAUGACACA

1 no match

11692 AACGAUCUCGAGGAAUACGGCCUUA

111693 CCUGAACGCGCCGAUCUCGU

1 no match

11694 AGCGACGUCGCUUUUUGAUCCUUCGA

1

0 ncRNA

11695 GCGAGAAUAAACGAAAUACAGUGGGA

1

0 transposon

LTR

diver211696 AAGAAAACUAAUCCGAGUAUGCAGU

1

0 transposon

LINE

Doc

11697 AUGUCGAGCUCCCAGAACAACAACA

1 no match

11698 UCCGUGAUAGUUUAAUGGUCAGAAUGG

1 no match

11699 AGGAACAGCCCGAGGACUUCGUGAUUGC

1 no match

11700 GGCGGCAAUGGCACAGCAUCCUGGGG

1

rRNA

LTR

297
Su(Ste)

rRNA

rRNA

rRNA
LINE

baggins

0 transposon

LTR

ninja-Dsim-like

0 transposon

LTR

gypsy81 ncRNArRNA
Su(Ste)Low̲complexity

rRNA
rRNA
LTR

0 repeatninja-Dsim-like

CG9422-RA¦CG9422
trf
LTR

3S18

CG13695-RB¦gk
LTR

invader3

trf

0 repeat0 transposon

F-element

SAR̲DM
LTR

ninja-Dsim-like
rRNA

trf

11701 AGACCGAAAGCAUCGAGGUGGCGAUCC

111702 AAUAGGCUCCUCUCAGUCGCUUCCCGGGA

1 no match

0 coding gene

CG5094-RA¦Sgt

11703 AACAUAACGACACUAGUGCAGCCACAG

1

0 transposon

11704 CAACGAGUUCCUCUGCCGCGUGCC

1

0 coding gene

11705 ACCCCCGUCAGAAGAUGCACUUUAAG

1

0 coding gene

11706 UCAUCAUCAUCAAUCACCGGCCAG

1

1 transposon

11707 CGUAACUUCGGGAUAAGGAUUGGCU

10 ncRNArRNA

11708 AGAUCCCCGAAUCCGGAUUGGCGGAGA

1 no match

11709 CGUUCACUUCGCCGAGGACGUUCAGGCUC

10 coding gene

CG18628-RA¦CG18628

11710 AUACUAAUUGCCCGUGAGGCUUGACC

1 no match

11711 GGUGCCAGGCCCGUAUAACGUUAAUGA

1

0 ncRNA

rRNA

11712 GUCUGGUUAAUUCCGAUAACGAACGAGU

1

1 ncRNA

rRNA

11713 UCGAUUCCGGAGAGGGAGCCUGA

1

0 ncRNArRNA

11714 GAUCAUCAACGAGCCCACGGCGGCCGCC

1 no match

11715 UCGAGAUGGUACCGGUUCCGUUGGACA

1 no match

11716 GAUGCGGGGCGAACGACAGGUGGUGG

1 no match

11717 UACGUCCCUGCCCUUUGUACACAC

1

0 ncRNA

11718 GCCUUACGAAACGAAACCCGAUCAAAU

1

1 transposon

LTR

gypsy

11719 AGACCGAACAAAAUACAACGUCGACAC

1

0 transposon

LTR

McClintock

11720 ACCCAUUACAUCCUAUACGGUCUUUU

1

0 transposon

LTR

GATE

11721 ACCUGGAACUGACCAAGGAUGAGGAGA

1

0 coding gene

CG4836-RA¦CG4836

11722 AACGGGGAAUCAGGGUUCGAUU

10 ncRNArRNA

11723 CACGACCCCCAGCUACGUGGCCUUCACCGU

1 no match

11724 CAAUCCGAUACAUUUCACGCCGAC

1

0 transposon

LINE

INE-1

11725 GGAAAACCUGAAGAUGAUCCUGAG

1

0 transposon

LINE

Helena11726 CCAGGACGUUGAUAGGUCAGGUGUGG

1 no match

11727 GAAGUUUAGCUAUCCCGGGGGC

1 no match

11728 ACCCUGACGCGCCCGAUCUCGU

1 no match

11729 UUCUUGAGAAUUUGGACGCCGUU

1

0 transposon

LINE

Cr1a

11730 UCCUACGAGAUGGAAGCUUACAUCG

1

0 no annotation

11731 GUUAAUUCCGAUAACGAACGAGACUCA

1

0 ncRNA

11732 CAAAGGCAUGCCCGAUGUCCGCGAAA

1

1 transposon

LTR

opus

11733 UUCAAACUAAUUGGUUCUCCGCCC

1 no match

11734 AAGCUCGAGAAUCUCUGAAACGGA

1

0 transposon

LTR

ninja-Dsim-like11735 ACGAUGAUCGAUGACGAACUACGAAGG

1

0 transposon

LTR

ninja-Dsim-like11736 UACUCGAGACACCACGGUGAAGUGG

1 no match

11737 UGAAAAUCCGGGGGAGAGGGUGU

1 no match

11738 GACUUAACGACCGAGAAGUUUCUUGC

1

0 transposon

LTR

GATE

11739 CCCGAAAAAAUCCCCCGGCUACGACC

1

0 transposon

LINE

FW

11740 AAAGUCUUUGGGUUCUGGGGGGA

1 no match

11741 GUCACCUACAGGUCCCGAUACGAGCU

1

1 transposon

LINE

X

11742 CCAAAAACUCGUAAGCACUCCAGCGC

1

2 transposon

LTR

Stalker4

11743 CCCUCAUCCUACAGACCAAUCAG

1

0 transposon

LINE

Doc2

11744 UCUCGUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)11745 AACCGGACAAGAUACCCCAGGUGG

10 coding gene

CG7907-RB¦CG7907

11746 AACGAGCGCGACCCUUGUCCUUAGUUAC

1 no match

11747 CUGCCAUCUUGUCGUU

111748 GAGUUCCUGAAACCGGUCGCAUGCAAGC

1 no match

11749 UGCGGCCGUGUGGCGGCUUCCGAAAGCCU

1

0 transposon

11750 AGCUCCAACAGUUGGCGCUUCAGGCUGCUCC

1

0 no annotation

11751 ACUGACCCAAAAAGUCAAUAUUAUUGCA

111752 GACCCAGGAUGACCGGUCGCUCUCUG

1 no match

11753 AGCUUCAUCCAAGCGAACUGUGCCCC
11754 AGCUUUAAUCACGAGCAAUGCGGUGA
11755 CGAGAGUGGACGGGAGCGGCGGGGGC

1 no match

11756 GACGAAACGCAACAACAAAAUGGAC

111757 GACAAAACACAUCCCGGGAAAUGAGC

1 no match

11758 UAGUGACGAACCCGGCACCGGUGACA

1

0 coding gene

CG30020-RA¦CG30020

11759 AGGAAAACGACAACGACGCAAGA

1

0 coding gene

CG41053-RA¦CG41053

11760 CAGUCCGAAACACACCCCCGAUAAA

1

2 no annotation

11761 GACUCUAUUACAAUACUACGACGAGGU

10 transposon

11762 AAGAUUGACGGAAGGUCACCACC

1 no match

11763 CAGGCCCGUAUAACGUUAAUGAU

1

0 ncRNA

11764 CGUUUCAUGAGGAAUGGGCCCAG

1

0 transposon

LINE

G2

11765 CACUAUCGAAACGACGGAUAAGCCCC

1

0 transposon

LTR

gypsy6

11766 AUGAGACUACAAACGGAUUGCGGACCG

1

1 no annotation

11767 AGCCCCCGCGUGAGACCGUACCCGAAAC

1 no match

11768 AUCCUUAACUGUGAGGGGAUCCUCAA

1 no match

11769 GGGAUAAUGAAAUAAGACCUCUGUU

111770 ACUCGCCGAAUCCCCGGGGGCCGAGGGA

1 no match

11771 GCAAACCCAAAAAGACAAUACACGAC
11772 UGUGAGGGGGAUCCUCAA
11773 CGUCCAAAAAACCCGUGCUUCUGGC

1 no match

11774 CAGACUAAGACGUUCUCCACGUACA
11775 AGCGGGAAUGUGCACUUUUGUCAU

LINE

G2
CG40719-RA¦CG40719
CG3836-RA¦stwl

LTR

springer

rRNA

rRNA

1 no annotation
LTR

GATE

0 transposon

LTR

rooA

1

1 transposon

LINER1-element1

1 no annotation
LINE

G2

0 transposon

LTR

gypsy6rRNA

0 ncRNArRNA

1

0 repeattrf

1

2 coding gene

CG3339-RC¦CG3339

1

1 coding gene

CG31359-RA¦Hsp70Bb

10 coding gene

11776 UGUGCUAGAAGACGAUUUUCGGG

1

0 transposon

11777 UUAAAACAGCAGGACGGUGAUCAU

1

0 ncRNArRNA

11778 UCGAGAAAAUUGACGAAUUGCUG

1 no match

11779 AAAAGGACAAUUUUUGGCCGUCAC

1 no match

11780 GCCGAAAGACCAAGGGUUCCUGCGUA

1 no match

11781 AGGAACCUGCGGAAGGAUCAUUA

12 ncRNArRNA

11782 UGUGUUUCCCGGCGUACUAUACAGCC

1 no match

11783 UGUUUCAGAGCGUUGGCCAGUUU

1

0 transposon

CG14224-RA¦Ubqn
LINE

Low̲complexity

Cr1aF-element

11784 ACAAGCAACGCAUCCAAUUACCGAA

1

0 coding gene

11785 ACAUCAAUCGCUGAUGAGACACCGGGA

1

0 transposon

CG11076-RA¦CG11076

11786 GACCAGGACGUGACCCAAAAACGAUGCC

1

0 coding gene

CG9320-RA¦CG9320

11787 CAAAACAACAUCCCGGGAAAUGAAAAA

1 no match

11788 AGGUGUCCCAAGGCCAGCUCAGGGCGG

11 ncRNArRNA

11789 UCCGAUUUCAAGUAAUAGACGAACU

1

0 repeat

RSP

11790 CGGCGGAGGCGUAUCUGGGCGAGA

1

0 coding gene

CG31359-RA¦Hsp70Bb

11791 AGAUCCCCGAAUCCGGAGUGGCGGAGU

1 no match

11792 GCGUAAGUUGCUAGAGGUCGAUACUGA

1

0 transposon

11793 AACGAGCUGGUGCGAACCAAGACCCUG

1

1 coding gene

11794 GGUAGAGAUAGGCCGAUAGCGUACAUU

1

0 transposon

LTR

opus

11795 ACUCGCUGAAUCCCGGGGCCGAGGGA

1 no match

11796 CAAAGAGACAGAACUCAGUAGCAGCC

1

0 transposon

LINE

Cr1a

11797 UGACAGUUCACGAUUGAUUCCCCAC

1

0 transposon

LTR

opus

11798 CAUCUGUGGAGGACAGCAUGGAA

1

0 transposon

LTR

ninja-Dsim-like

11799 AUAUCAGUUAUGGUUCCUUAGAUC

10 ncRNA

rRNA

11800 UUCGCAAAAGUUGACCGAACUUGAUUA

10 ncRNA

rRNA

11801 GGAGCCGGGCGUGGAAUGUGAGUGCC

1 no match

11802 GAAGACGAAAACCAAACUGACAAUGGGA

1

0 transposon

11803 ACCCGGGGCGUUCUAUAUAGUUAUGUAU

11 ncRNArRNA

11804 CGCAAACCCAAAAGACAAUACACGAC

1 no match

11805 ACCCUGAACGCGGCCGAUCUCGU

1 no match

11806 AUUGCCAGGUAGGGAGUUUGACUG

10 ncRNArRNA

11807 CAAGUCCUCGCGCGAAAGAAUACCAA

1 no match

11808 UCCGAUUUCAAGAACCAGACAAACAGA

1

0 repeat

RSP

11809 AUGCAGAUCGUAUGGUCUUGUACCGACG

10 ncRNA

rRNA

11810 AUGCAUGUCUAAGUACACACGA

1

0 ncRNArRNA

11811 AACUCUAAGCGGUGGAUCACUCGGC

10 ncRNA

rRNA

11812 ACGAGUGUUAUUGUGUGCCGGU

1

1 ncRNA

11813 CGGACAGAGACGGCGCAUUUUCCC

1

1 transposon

11814 ACCCUGAACGCGUCCCGAUCUCGU

1 no match

11815 CAACAUCUCGGCGCAGUGCGGAUC

1

0 no annotation

11816 GCCGAAUUAAUCGCGAGGCUGCAAGAC

1

0 transposon

11817 UCGGUCGGGCUGGGGCGCGAAGCGGGG

1 no match

11818 UGACGCCUUGCGUGUUACGGUUG

111819 AUCGAGAAGCGAACCCCGGCGAACUGA

1 no match

11820 UGCUCUCGAAUGUAUGCUCGAUA

1

1 transposon

LINER1-element

11821 AUUGACUUUUGGAAACUAUAUGACCU

1

0 transposon

LINE

Rt1b

11822 CCCGAAAACAGAUGAGGUAGCG

1

0 transposon

LINE

F

11823 CAUAGUGAUCCGGUGGUUCUGUAU

1 no match

11824 GAUGUCGGCUCUUCCUAUCAUUGUGA

10 ncRNA

11825 CCCAAGAGAAAAAUACGUGAUGGACU

1

0 transposon

11826 CACAACUUGACUCAUCCAACUGGA

1

0 no annotation

11827 AUAAGCAAAAUGCAGAACACCGGAGA

1

0 transposon

11828 ACGAACUUGAGACCGCCCCUGGA

1

1 Su(Ste)

11829 AUGUGCUAGAAGACGAUUUCGGACCGA

1

2 transposon

11830 CGGCGAGCGAAAAGAAAACAGUUCAGC

1

0 ncRNA

11831 UAACCAUGAGACCGAUAGUAAAC

1

0 ncRNA

11832 CAAUCCGAUACAUUUCACGCCGACAU

1

0 transposon

LINE

INE-1

11833 GCUGCAAUUGUUUGCCGUGGGACUAC

1

1 transposon

LINEbaggins11834 AGAACAUAUCAGGGGCCUUCGCAGA

1

2 transposon

LTR

HMS-Beagle

11835 AUCCAACUAAAACUGUUCAGCGCCGA

1

0 transposon

LTR

micropia11836 AAGGGAAGAGCCCAGCGCCGAAUCCCC

1 no match

11837 UCUCAUCGUCGUAGAACUAGCCCGAG

1

0 Su(Ste)

11838 AACCACGAGAGGUACAUUUUUGCAGCU

1

1 transposon

11839 GAGCAAGAUGGACGGGCUAAAGCGGG

10 coding gene

11840 UCGAAACCCACGCAUCUGUGGCAGGC

10 transposon

11841 UACGGUUGUUUCGCAAAAGUUUACCGAA

1

1 ncRNA

11842 GACUACACAUCGAGAGGUCCCCGGUUCA

1

2 ncRNA

11843 CGAAGCUAAAACGCUGGAAGGCUCGU

10 transposon

LTR

opus

11844 CGGUGAUCGAUGACGAACUACGAA

1

1 transposon

LTR

ninja-Dsim-like11845 GCUCUCGAAUGUAUGCCCGAUAUU

1

1 transposon

LINER1-element11846 AACCGUGACGGGACGUUACGCUGACGGG

1 no match

11847 CUCCCCCGCCCCACCCCGCGCGCGCCGCUC

1 no match

11848 ACUCGCCGAAUCCCGGGCCGAGGGAGUC

1 no match

11849 AUUCACCAAGCGUUGGAUUGUUC

10 ncRNA

11850 GACGUAGCAGCCCGGGCGUCCUCCAGC

1

0 transposon

LINER1-element

11851 CCGAAUACGAAGAACAGGCAGAA

1

0 transposon

LTR

gypsy1211852 GGGCUCCGGGGGAAGUAUGGUUGCAAA

10 ncRNA

11853 GAUGGGGCCGCUUGGGAACACCGC

1 no match

11854 UCUCACUCGUCGUAGAACAAGCCCG

1 no match

11855 ACACUCAUCAACCAAAGGACGUAGGA

1

0 no annotation

11856 UUGUAGAUCGACCAUAUCACCGUGU

1

0 transposon

11857 ACGCGCGGCAGGACGAAAAGACCCCG

1 no match

11858 CAUCGAGCUCAAUUGCAUCCCUCGCA

1

0 no annotation

11859 AGACCAGACGUAAAUUGCAAAUC

1

0 coding gene

11860 UAAUGUCCCUUAAAUCAGCACUCGU

1

0 no annotation

11861 CGAGUAAUAUGAGCGCCCAGAGU

1

0 transposon

LTR

opus

11862 CCAAGUCCUCGCGCGAAAGAAUAUC

1 no match

11863 AUCCGGACAAACACACAAGACCCGAUC

1

0 transposon

LTR

opus

11864 CAUCCUGAACGCGCCCGAUCUCGU

1 no match

11865 UUAUUAACGAAACCUGAGACCGACAU

1

1 transposon

LTR

11866 UCACCGGGAAGCACACUGAUGCCU

10 transposon

LINE

LTR

LINE

accordaccord2
CG7808-RC¦RpS8

LINE

Porto1rRNA
LTR

McClintock

LTR

mdg3

0 ncRNA

rRNA

rRNA
LTR

IdefixLINE

Doc4Su(Ste)

DNA

1360
rRNA
rRNA

Su(Ste)LTR

springer
CG5417-RB¦Srp14

LINE

R1-element
rRNA
tRNA

rRNA

rRNA

LINE

Cr1a

CG11856-RA¦Nup358

297
G2

11867 CGCUCACAGACUACCUAAAAGGCGCA

1

0 transposon

LINE

Doc4

11868 ACAAACAGUACACCUACUAGCCCAUG

1

0 transposon

LINEbaggins11869 AGAACUGGCGCUGUGGGAUGAACC

10 ncRNA

11870 CAAUCUCAGAUAAAAACCCGAACG

1

0 transposon

LTR

11871 GAAUCUGAUAUAGAGAGCUGCACGUG

10 transposonLow̲complexity

F-element

11872 UACUUAACACCCUGUACUCAGCAUC

1

0 transposon

LTR

gypsy

11873 ACUCGGCUCGUGCGUCGAUGAAGAACGC

12 ncRNA

11874 AAAGGGACCCAAAUUGGAGGGCAAGUCU

1 no match

11875 GGACGGCGGAGCGAGCGCACGGGGUC

1 no match

11876 UGAGCAAUAACAGGUCUGUGAUGCC

10 ncRNA

11877 UAGAUGGUAGCCCAGGCAUUUGUGU

10 transposon

11878 AUCGCAAGAUCGUUAUAUUGGUUGA

1

0 ncRNA

11879 UGCUCUCGAAUGCUUGCCCGAU

1

0 transposon

LINER1-element

11880 AACUGGAAAAACUGACGCAUAAG

1

0 transposon

LINE

G2

11881 CGACCACGUUGUGCUGCCACCGAGA

1

0 transposon

LTR

ninja-Dsim-like11882 GGAAUUCUGAGAAAUACUCCAGCGACC

1

1 transposon

LTR

gypsy311883 ACCAAAAUCGCCGGGAUGAGGCCUACGA

1

0 coding gene

11884 CCCCAAAACACACAUAAGCUACUGAA

1

0 transposon

11885 CGCGGGUCAACGGCGGGAGUAACUAUGA

1

0 ncRNA

11886 UGUUUCAUCGUUAGGCGGCUCGGG

1

1 AT-chX

11887 AUGUUAAACAAAACCGUUAAAUCAGUAA

1

0 transposon

LTR

Idefix11888 AAGUCGCGGGGCAGCAUGGGGGUUGC

1 no match

11889 GCCGACCCCGAUUUUAAUAAACCGA

1

0 transposon

LTR

roo

11890 GACGUGGCGACCCGCUGAAUUU

1 no match

11891 CGCAACGCAUUCCGAGGAUCUUCUCU

1

0 transposon

LTR

ninja-Dsim-like11892 ACUUCAUAACCGAGCGACUGUUC

12 transposon

LTR

GATE

11893 GGCGGGCGCGGGACAUGUGGCGUA

1 no match

11894 GUGAGGCCUCCGGACGUGAUCACUGUGAC

1

1 ncRNA

11895 GACAAUCGAACGAAGUCAUAGAACA

1

0 transposon

LTR

gypsy811896 CACAAAGUUAUUCUUCUACCGAUGG

1

0 transposon

LTR

Rt1c

11897 UCAAAAUGGAAGAGACCCUGCGUG

1

0 transposon

LTR

opus

11898 GGUCCCUGUGGAGGUUGCUGUAGUCC

10 coding gene

11899 UGAUCCAUAAAAACUGUACACAGACG

1 no match

11900 CUCGAAGAACGGCCAGACCCGCGAGC

10 coding gene

11901 AGACCCAGUGCCGACGCGUCCGUUGUC

1

0 transposon

LTR

gypsy711902 UCGGCCUGGAUCACGGACAUUUCGGA

1

0 transposon

LTR

ninja-Dsim-like

11903 AAAGCACUCGACGGUAACCGAUGGU

1

0 transposon

LTR

Quasimodo

11904 ACCGAUAUGGUUGGACCACAAUCUUU

1

0 ncRNA

11905 UCCUAAACUACGGGAGAUAUUUGGA

1

0 transposonDNA

hopper11906 CGCCCGUCCCCGCCCCUUGCCUCUCGGC

1 no match

11907 ACCACCCUGAGCGCGCCCGAUCUCGU

1 no match

11908 CAAACCAAUCCCAACCAGACCCGUCA

1

1 transposon

LINE

G2

11909 AGAGGUGAAAUUCUGGACCGGCGC

1 no match

11910 ACUCAACACGAAGACCCAGUAUACCGU

10 transposon

LTR

Idefix11911 AGCAACAUGACCCAGGUUGCCUACCAGA

1

0 transposon

LTR

McClintock

11912 ACUCGCCGAAUCCCGGGGCCGAGGGC

1 no match

11913 GAACCGAAAAAUCACAAUUUGCC

1

1 transposon

LTR

McClintock

11914 CCUCCACUAUGGCCAUGCGGUCGCUG

1 no match

11915 CGGAUGUCUAUGAGAUGAACGUAAU

1

0 transposon

LTR

ninja-Dsim-like

11916 GUUGCUUGAUAGUGCAGCACUAAGUGG

10 ncRNA

11917 ACCCCCUGGGACGCCGAGUUCCUGUC

10 coding gene

11918 GCGAAUGGCAUCCGGAUGAGAAA

1

0 transposon

LTR

flea

11919 CCCACCUGAAUCUCCGCAACCCAGUA

1

0 transposon

LINE

G2

11920 UGAACGCGCCCGAUCUCGUCUGAUCUC

1 no match

11921 CAACCAGAGAGCCUACCAACGUGG

1

0 transposon

LTR

ninja-Dsim-like

11922 UUCCUUAGAUCGUUAACAGUUACUU

10 ncRNA

11923 CUCGCAAGAAAACUAAUCCGAGUAUGC

1

0 transposon

11924 UCGUGAUGUUCUUGGCCUUGCCCGU

1

0 no annotation

11925 CCGAGAGAAGUACGACCGGGUGCUGAA

1

1 coding gene

11926 AGUCUAACACGUGCGCGAGUCGGGGC

1 no match

11927 AAGAGGUACGGCCGGGGGCAUUCG

1 no match

11928 CCCAGGACUGGAUCGCAUCGACGCACA

1

2 transposon

LINE

G2

11929 UUCACAUGCAAACAUCGACCAGGAG

1

0 transposon

LTR

flea

11930 CUCCAACUGAAGGAGUACGAAUGAUCG

1

0 transposon

LINER1-element

11931 AGGUGGGGGAGGUUUGACUGGGCGGGUA

1 no match

11932 CUGGCGAAUAAAAGUAAACGAGCAAAA

1

0 transposonLow̲complexity

F-element

11933 GCAAACGUGAUGUUACGGUGCCCAA

1

2 ncRNA

11934 AAAGUAAAAUGUAUCCGGAGCGA

1

2 transposon

11935 UGUUCAUCGUUAGACGGCUCGGGCGU

1 no match

11936 AAAGCCCCUGGAGAUACAACUAGCCAU

1

0 coding gene

11937 GACGAGAUAAAGCGAAAACCGGCAA

1

0 transposon

LINE

G6

11938 AUCGAAUGGAGUGCCAGAACCCGUUAG

1

1 transposon

LINER1-element

11939 ACGAGCCCGAAUUCGACUACCUCAA

1

0 coding gene

11940 ACAUUACAUAACCGAGCGACUUUCAA

1 no match

11941 CAAGAUAUGACCAAAGCAAAGACGC

1

1 transposon

11942 AGGUCUCCGGACGUGAUCACUGU

10 ncRNA

11943 AAGAACAACAGUGCAGACGGCGC

10 transposon

DNA

H

11944 CCAGAAUCUCCGCAAAGCCUGAGGA

1

0 transposon

LTR

diver211945 UGCUCUCGAAUGUAUGCCCGUAUAUA

1 no match

11946 GACCGGCUCCGGGACGGCUGGGAAGGCC

1 no match

11947 UCAUAAUAAGUUCCCCGACGUGCCGG

1

0 Su(Ste)

Su(Ste)11948 UUGGGUUCCGGGGGGAGUAUGGUUG

12 ncRNArRNA

11949 AGAACCGACGUGCUAUCAUUCCGUUCC

1

0 coding gene

CG7840-RA¦CG7840

rRNA
297

rRNA

rRNA
LINE

Rt1b
rRNA

CG5111-RA¦CG5111
LINE

Doc
rRNA
AT-chX-B

rRNA

CG31740-RA¦CG31740
CG1873-RA¦Ef1alpha100E

7SLRNA-RArRNA
CG12227-RA¦skpF

rRNA
LINE

Doc
CG7556-RA¦CG7556

rRNA
LTR

297
CG32300-RB¦oxt

CG6235-RA¦tws
LINE

Cr1a
rRNA

11950 AGCCCGUGGACGGUGUGAGGCCGGUAG

1 no match

11951 UCCAGUAUUAUGACGAGGUUGAGA

1

0 transposon

LTR

gypsy311952 AAGAUAUUGAGCGACUUUCCCCGUAG

1

1 transposon

LTR

3S18

11953 CAAUUCAACGAGGACCGCUAUGAGA

1

0 transposon

LTR

flea

11954 AAGAUGUCCGGACAGCUGGGCCCGUAAA

12 Su(Ste)

Su(Ste)11955 CCGAGAGGUCCGGGUAAACCGCUG

10 ncRNArRNA

11956 GUCCCGCAACGAGCGCAACCCUCGCCA

1 no match

11957 UGUUUCAUCGUUAGACCGCUCGGGCG

1

1 AT-chX

AT-chX-B

11958 GGUGGGCACGUGGCAGAGGAACUCGU

10 Su(Ste)

11959 CAUACGGUUACUGGAGUCGACGGAAA

1

1 transposon

11960 AGCACGGGAGACACACGGGGGGUGCU

1 no match

11961 CGGAGAGGGAGCCUGAGAAACA

1

1 ncRNA

11962 GGCACAAUUACCAGAAGAUGUUGACGCA

1

0 transposon

LTR

roo

11963 CGGAGCCGGACGACCUUGACCUCU

1

0 transposon

LTR

diver211964 ACGAGCGCACGUGUUAGGACCGAAA

1 no match

11965 GAAACCAUCAGACGCCUCCAGAGGAC

1

1 transposon

LINE

G

11966 AUAAUGAGAUUGAGCAAUAACAGGUC

10 ncRNA

11967 ACGUAGGGUGCGAGCGUUGUCCGGAUU

1 no match

11968 CACAGAGUACGGGGGCUUACUGAAGUCAC

1 no match

11969 UCGUCAUCGUCGUAGAACAGCCCGA

1 no match

11970 CGAACACAUCCGGUCGAUCCAGCAAA

1

0 coding gene

11971 CUGGAACUAAGAUUGGCUUGCCAAA

1

0 transposon

LINE

INE-1

11972 CAAUACCGUAUUGUGGGAGACCAG

1

0 transposonLINEaccord2

11973 UGAGAUUGUGAAUGAUAAAGAUUGG

1

0 transposon

LTR

invader3

11974 AGGGCUGCAAUUCUUUCCCGUGGGAC

1

1 transposon

LINE

Fw2

11975 CCGAAUACGAAGAACAGGCAGAAUCCGA

1

0 transposon

LTR

gypsy1211976 GCACUCAUAACGAGGUUGCGCAUU

1

1 transposon

LINE

Doc4

11977 UUACCUGAACGCCUUAGCUGCUGGUA

10 coding gene

CG10286-RA¦CG10286

11978 CUGUUGGAUGAUCCGCCCGACUGGAGG

10 coding gene

CG30412-RA¦CG30412

11979 AGCCUAGAUGAGUUGCCACAGUUU

1 no match

11980 GCGCGUCGGGGGGGGGCCGGGGC

1 no match

11981 UUCGAGAACAAACGCUACUGUUCGGCCG

10 transposon

11982 UGUCCCUUAAAUCAGCACUCGUAAAG

1

0 no annotation

11983 AUACCCAGGAGUACUAUCGGGCAGA

1 no match

11984 ACGAUGACGAUCCCACGGCUGGAGC

1

0 transposon

11985 GCCGAACUUGAGACCCCAGCCGCUCC

1

0 no annotation

11986 AACUUAAAGGAAUUGACGGAAGGGCACC

1

0 ncRNArRNA

11987 UCAGGCCAAGAAGGAGAUGGAGCCGAA

1

0 coding gene

CG10859-RA¦CG10859

11988 AAUAGGCUCUCUCAGUCGCUUCCCGG

1 no match

11989 AAGAGGGACGGCCGGGAGCAUUCGU

1 no match

11990 CCGAAGAAAGCGAAGAUGCGGCC

10 coding gene

CG9696-RA¦dom

11991 UCCUUCAACUGUGAGAGGAUCCUCAA

1 no match

11992 CAUGAUUACAGAUAACAGGAUAAAGUC

1

0 transposon

11993 CAAAGGGCCUCGAAGAUUAUUAACGA

1

0 coding gene

CG10326-RA¦CG10326

11994 CUAGCUCAGUCGGUAGAGCAUG

10 ncRNAtRNA

11995 AAAAAAACUGAAGAUGAUCCUAGAAGCCGCA

1 no match

11996 CAACCAGAGAUCUAGAGGGCCCUAUUA

1 no match

11997 AAACGAGAACUUUGAAGGCCGA

1 no match

11998 ACGAGAGGAACUACUACGCCGCC

1

0 coding gene

CG5642-RA¦CG5642

11999 ACGAGAGAAGACUUUCACCCGAUGAGA

1

1 coding gene

CG12717-RA¦CG12717

12000 AAACCUGAGGGGAUCCUCUAA

1 no match

12001 UGUCCGGGGCUGCACGCGCGCUAC

1

1 ncRNA

12002 CCAGACGUAAUACUCCACUGCCCGGACU

1

1 transposon

12003 GAACUGGCGCUGCGGGAUGAACC

1

1 ncRNA

12004 UACUCGAUUGCAUAAACUCACAUU

1

0 transposon

12005 ACUCACCGAAUCCCGGGGCCGAGGGAGC

1 no match

12006 GCGGGAUGAACCGAACGCCGGGUUAAGG

1 no match

12007 CACUGCUGUCACCGCUGCCGCCCCGU

1 no match

12008 CGCAAACCCAAAUCGACAAUGCACG

112009 CCUGGGAAACGGGGCGGGGCUGGAA

1 no match

12010 ACUGAUACGAUUGCACCACCUUC

1

0 transposon

12011 GAAGAACGAGGUGAGCAGUGGUGAU

1

0 coding gene

12012 GCGUCGGGCGUGGUUAGUACUUAGAU

1

1 ncRNA

12013 CAAAAUCUCAGAUAAAAACCCGAACGU

1

0 transposon

12014 UGCAAGAGCAUGGACGAGUUCAACGU

10 coding gene

CG5407-RA¦Sur-8

12015 AUCUAUGGGUGGUGGUGCAUGGCC

10 ncRNA

rRNA

12016 CUCCGGAUGUGCUGACCCCUGUC

1 no match

12017 ACCUGAUUGAUUGCGUAGACGACGACC

1

0 transposon

12018 UUGACGGAAGGGCACCACCAGGAG

10 ncRNA

rRNA

12019 CCCCGGAUAGUUUAGUUACGUAG

10 ncRNA

rRNA

12020 GGCCGAUGAAACCCUGGUUCGAUUC

1 no match

12021 ACGGGAAACAUACCAGGUCCGAA

1 no match

12022 UCGAUAUCAUUCGUACGAGCUUGAAACC

1

1 transposon12023 CCUGCGCCGUAGGCAGGUCC

1

2 coding gene12024 AUUCCGGAGAGGGAGCCUGAGAAA

10 ncRNA

12025 UAGAUCAUUCCUAGGUUACAGGUUCCU

1

0 transposon

12026 ACCGAACCGAUUAAAAAUUAAAGUGCA

1

0 no annotation

12027 UUUAUGUUAGUUACUUGUUCCCCGG

10 ncRNArRNA

12028 AGAGGUUAAGCCCGAUGAACCUGAAU

1

0 ncRNA

rRNA

12029 GCUAGAACGUAGUCUCUCGAGAGCGA

1 no match

12030 GCCAUCUCAGUUCGGAUUGUACUCU

1 no match

12031 CACUAUAACAACGGACCAGGGAAC

1

0 transposon

12032 ACAACCAGAGAUCUAGAGGGCCCG

1

1 no annotation

Su(Ste)LINE

R1-element
rRNA

rRNA

CG15258-RA¦CG15258

LINE

G2

LTR

ninja-Dsim-like

LINE

Cr1a

rRNA
LTR

HMS-BeaglerRNA

Unknown

0 repeat

RR50960

trf
LINE

Doc3
CG5434-RA¦Srp72
5SrRNA

LTR

LINE

LTR

Burdock

Quasimodo

invader6
CG15651-RA¦CG15651
rRNA

LTR

LINE

springerDoc412033 AUGCGCCGAAGAUAUGGGUUUGCAGU

1 no match

12034 AAAUCCGGACAAACACACAAGACCCGU

1

1 transposon

12035 CUCGAAUCAACAAAUUGCGCCGAUAU

1

0 coding gene

CG41545-RA¦CG41545

12036 AACUUGAGACCGCCCCUGGACGA

1

0 Su(Ste)

Su(Ste)12037 CUGGUAAUUGCCGUUGUUACCGUUGU

1 no match

12038 CCCGAAAGCAGACGAGGUAUGUACC

1 no match

12039 AAACCGUGAAGAUGAUCCUGAGUCGUC

1 no match

12040 ACCGCCCUGAACGCGCCCGAUCUCGUC

1 no match

12041 UAUUCAAUCAAGUGACGCUGAAUCCGA

112042 GCACCCGUAGCUCAGCUGGAUAGAGCA

1 no match

12043 AAACCGAUAUGGUUGGACCACAAUCUUUU

1

1 ncRNA

12044 ACUUCAAUACAGCGAGAUGGCCCA

1

2 transposon

LTR

Quasimodo

12045 GCUCUCGAUUGUAUGCCCGAUAUA

1

1 transposon

LINER1-element12046 ACUUCGAACGCACUUGCGGCCCCGGGU

1 no match

12047 AACUUCGGGAUAAGGGUUGGCUCU

1

1 ncRNA

12048 CAAAGACGGAUCACUUGCCGAUUUAA

10 transposon

LTR

opus

12049 GAGAUAUUGAGCGACUUUCCCCGUAGU

1

1 transposon

LTR

3S18

12050 AACAAACAGAAUUCCCGAAUGAGAG

1

1 transposon

LINE

Cr1a

12051 AAGAAGAAGAAGGAUCCCUGUGCC

1

1 repeat12052 GCACGAAAUGAACCCGAAAGCACU

1

0 transposon12053 CGAGAGGUCCGGGUAAACCGCU

10 ncRNA

12054 UACGGAGCAUUGGACGAGCAGCGC

10 coding gene

12055 GACCAUGAGAUUACACUGGAGGAUG

1

0 transposon

12056 ACCACCCUGAACGCGCACGAUCUCGUC

1 no match

12057 CAGUACGUGAAACUGCUUAGAGGUU

10 ncRNA

12058 CAGCUAGACUAUGUAUCCCCGGG

1

1 transposon

LINE

Doc

12059 UGGUGAACGACGGCGACAAGCC

1 no match

12060 AACCGAAUAAACGAAAUGGAUGACA

1

1 transposon

LTR

invader4

12061 AAACCAAAGCUUUUGGGCUCCGGGGG

10 ncRNA

12062 GCAUGGUGAACGAGGCUGAAAUUA

1 no match

12063 ACGGUAAGACGUCGUGGAGGACCGAAC

1 no match

12064 GCGAGGAGGAGGACUAGCUGGCCGA

1

0 Su(Ste)

12065 AAGCAAAAAUUGAGAUUAAAUGACA

1

0 transposon

12066 CGCUUGGGAACACCGCGUGUUGUUGG

10 ncRNA

5SrRNA

12067 UCGCAAAGGUUGACCGAACUUGA

1

1 ncRNArRNA

12068 CCCCUGGACGACCCACGAUUUAACAUU

1 no match

12069 ACCAAACUCCGAAUACCUGCGAG

1 no match

12070 GCUCCGGGGGAAGUAUGGUUGCA

10 ncRNArRNA

12071 CUACGUCCGUUGGAUUAUGCCUG

10 ncRNA

12072 UGACUCUGUGCUGCUUAGGGAAACCAC

1

0 transposon

LTR

DM88

12073 AUCCCCACGGACUUGAUCGCAUCGA

1 no match

12074 ACGGGAAACUUACCAGGUCCGAAC

1 no match

12075 AGGCGCGGGUAACCCGUUGAACCCC

1 no match

12076 CUGUUAAGAAACCACUCGGGCCGCC

1

1 transposon

LINE

Doc4

12077 ACCCUGAACCGCGCCCGAUCUCGU

1 no match

12078 AAAACUACAAGCUGAGAUAGACCAC

1

0 transposon

LTR

mdg1

12079 AGCUGCCCGUGAGAUAUUGCAACCCAU

1

0 coding gene

12080 GUGGAGCCGGGCGUGGAAUGCGAGUGCC

1 no match

12081 GCUAAAUACUCGUGAUCGACCGAUAGU

1 no match

12082 CCAGAAAGCACCGUUUCCCGUCCGAUCAA

1 no match

12083 AUACACGUUAUCGAGCAGGAACUA

112084 UAAGGGUCGGGUAGUGAGGGCCUU

1 no match

12085 UAUGGGACAUGUGCUUAUUAGGCUA

1 no match

12086 UCGAGAUGGAGAGGCUUCAGAGUGAG
12087 ACACCCAAUCCCAAACAUGGACGAA

0 transposon

LTR

LTR

opus

Stalker4
7SLRNA-RA

rRNA

trf
LINE

Doc3
rRNA
CG3443-RB¦pcx

LINE

Cr1a
rRNA

rRNA

Su(Ste)LINE

RR49783

rRNA

CG18662-RA¦CG18662

1 transposon

LTR

blood

1

0 transposon

LTR

ninja-Dsim-like

1

0 transposon

LTR

McClintock

12088 GAAGGAGGAGAACCCGAUGCCAUCAGC

1

0 coding gene

CG18250-RA¦Dg

12089 GUGGGAGAUAUUAGACCUCGGUUUGGU

10 repeat

LSU-rRNA̲Dme

12090 UGCACCGAAAGUAUAUGAGAAGAACA

1 no match

12091 AAACUUCGGGGAUAAGGAUUGGCUCUG

1

1 ncRNA

rRNA

12092 ACCCUACUGUUGAUGUGUUGUU

1 no match

12093 CGGUCUAUUCGCCAGGUCCCGACGGAU

1

12094 GAAGCCGGGAGAUGGAGGUUGC

1 no match

12095 UUGUAAGGACCUGAGAACUUGUACG

112096 AGAAGAAGAGAUGCCCCAGUGAGUUU

1 no match

12097 UGACCAUUUACAAAAUGUAUUCCGA

1

12098 CGCACACACGAGGAGAGCAGAAUGGAGAGCA

1 no match

12099 GCUUAAAGUAGUUGAUGGUUUAAU12100 AUAACAAGAUGCAUACGAUGUGGC

1 transposon

LINE

Cr1a

0 transposon

LINE

Doc4

0 transposon

LINE

Doc

1

0 transposon

LINE

Cr1a

1

0 transposon

DNA

12101 UGAUUAGACAUUCCCGUUUAUCGCGAC

1

0 transposon

LTR

RR5020712102 CGCCGACUUAUUCCGAGAUGCCAAUG

1 no match

12103 CCGAGAUGGAUAUACCUCUGGUGUACCA

1 no match

12104 CAGUCCGUGGACGGUGUGAGGCCGGU

1 no match

12105 AACUGAAUAAACGAAAUGGAUG

1

0 transposon

LTR

invader4

12106 GGCGAUCUCUUCACGGGCGGUGAUCA

1 no match

12107 AUACUAAGCAGGGACGUUAAUGAA

1

12108 GUGGCGUCCGGUGAGCUCUCGCUGGCCC

1 no match

12109 UGCUCUCGAAUCUAUGCCCGAUAUAC

1

1 transposon

12110 ACUGGCACGGACUUGGGGAAUC

10 ncRNA

12111 AAGCUGAGUGAUCUACCCAUGGCCAG

1 no match

12112 CAACCAGAGUUCCCAGUGCUUAGU

1

0 transposon

12113 GAGGUUAAGCCCGAUGAACCUGAAU

1

0 ncRNArRNA

12114 AACGUGAGCUGGGUUUAGACCGUC

10 ncRNArRNA

12115 GGACAUGUGGCGUACGGAAGACCCGC

1 no match

0 coding gene

1360

pseudogene
LINER1-element
rRNA

LTR

Dm88

12116 UGCAACAAGAGCGUGUCCCGGGCAGC

1

1 coding gene

12117 CAAUAAGUGACCACCAUGCUAAUGUG

1

0 transposon

CG10229-RA¦katanin-60

12118 CAAACCGAGAGAAGACUUUCACCCGAU

1

0 coding gene12119 GCCGAACUUGAGACCCCAGCCGCUC

1

0 no annotation

12120 UGCCGGAGCGAGGAGGAGGACUAU

1

1 Su(Ste)

12121 CACAUCGGUAUGGCGACUUCUUU

1

0 coding gene

12122 CAUCAGGCCAGGCCACCGUUCCGAA

1

0 transposon

12123 ACUGUGAGGGGUCCUCAA

1

2 coding gene12124 ACCCCUGAACGCGCCCCGAUCUCGU

1 no match

12125 CACACUCUGAUUCCGAUUCGAGUUCAA

1

2 transposonDNAtransib2

12126 AUUUCCGAUACGUGUUCAACGCCGA

1

0 transposon

LTR

GATE

12127 AGCCGAAGUCAUUGUGCGCCAGAGUAA

1

0 transposon

Simple̲repeat

I12128 AGAUCCUACAACCGUGUGAGGGGAUCCUCAA

1 no match

12129 ACUCGCCGAAUCCGGGGCCGUAGGGA

1 no match

12130 AACAAAGAAGAGCAGAGCACCAUGAU

1

12131 UACCGGAGCACCAUCGACCGAUCCGGAU

1 no match

12132 CUGGCGAAUAAAAGUAAACGAGCA

112133 ACGCAUGUGUCCUAAGGCGAGCUC

1 no match

12134 ACCCAUGAGCGAGUCAUUCCGACA
12135 ACGCUUCAUCCAAGAGAACUGUGCCCG
12136 CUCCCCGCCCCACCCCGCGCGCGCCGC

1 no match

12137 AUGGGACUCAAAGAAACAAUCCAGUGGU

1 no match

12138 GCACCGUUUCCCGUCCGAUCAA

1 no match

12139 GCUUGCUGGGCGGAUUAGUGGCGAA

1 no match

12140 GGUGCCCAAAUUAACAACUCAUGCAG

10 ncRNA

12141 AGCGAUGAUACCGAAGAACGGGAAAU

1

0 transposon

12142 CAACGUUUAAAGAUGGAUGAACACG

1

0 no annotation

12143 UCAACUGUGGGGAUCCUCAA

1 no match

12144 UCACCGGAUGAAUAACGAGAACCU

112145 GUGCCUAUACAUUGCUAUGUUGACGCG

112146 AAUACUGUCCCUUAAAUCAGCACUCGU

1

0 no annotation

12147 AAUGGUUGCAACGGGUAACGGGGAA

1

1 ncRNA

12148 CAGACAUCUACUUCCCCCGCUCUUA

1

0 transposon

12149 GGAAACCCUGAUGGAAGACCGAAACA

1

0 ncRNA

12150 AUUCGUAGACGACCUGGGCGGGUUU

1 no match

12151 CGGGAAACUUACCAGUCCGAA

1 no match

12152 AUACCACCCUGAACGCGCCCGAUCU

1 no match

12153 GAACUUGAGAUCGGCCCUGGGACGACC

1 no match

12154 CCGAAGAUGACCAAGUUGGCUACCGAA

1

0 transposon

LTR

gypsy612155 CCCGAAAAAAUCCCCGGCUGCGAC

1

1 transposon

LINE

F

12156 CAUACCUUGAUUGGCAGUCCCGAUGA

1

0 transposon

LINE

Rt1b

12157 CAUCGAUCUGAACAAUGACACUCC

1 no match

12158 ACGAACAAUAAAACAUACGCCCGGU

1

0 transposon

LTR

GATE

12159 AAAGAGACAAUUGACGGUACCGCAU

1

1 transposon

LTR

Dm88

12160 GCGAGGAGGACGGACUAGCUGGCCGA

1 no match

12161 AUGACCGGGCGAGGAGGACGGACUAGCU

1 no match

12162 ACAACCGAGGAGGACCUUGAUCUGCACG

112163 AAUCAUGCCGACGGGCGCUGACCCCC

1 no match

12164 AUUCCUGGAGCAGCGAUAUAGGACU

1

0 transposon

12165 CACGAAACUUGAACGGGAUUAAGA

1

1 no annotation

12166 CAGAUCAUUUCUGGGGCUAGCAAG

112167 UGAGCAACGGUUAGACCCUGAGAUAA

112168 CUGGCAACAUGUCGAGCUCCCAGAA

1 no match

12169 GACUACCAGGAGACUUUUGAGUUCA

1

0 coding gene

12170 CAUGCAAGGGAACGUGAGCUGGGUUU

10 ncRNA

12171 ACAAACAGAAUUCCCGAAUGAGAGUA

1

0 transposon

LINE

Cr1a

12172 AUGCUAGAACGCGGUGAUUUCUUUGCU

1 no match

12173 CGAAGAUGGUGAACUAUGCCUGGGC

1 no match

12174 UCCGCGAUAGCGCAGGGUCGUCGCAC

1

0 transposon

LINER1-element

12175 CAAUCGAGUGUACAAUAUUUAGGAUU

1

0 transposon

DNA

H

12176 ACGGGCGAAGUGCCGGAUGUGAUGAUU

1

0 coding gene

CG4625-RA¦Dhap-at

12177 CCGGGGGGCUGGCGGUGCGGCGAC

1 no match

12178 UCCGCAGUGCGUUGAUAUGGCCAG

1

0 Su(Ste)

Su(Ste)12179 UGAGACCACAAACGGAUUGCGGACC

1

1 no annotation

12180 UGCUCUCGAAUGUAGUGCCCCGAUAUAC

1 no match

12181 UAGACAGAAAAUAAGGGGGACACGC

1 no match

12182 GCGAAAGCAGGACAUAGUGAUCCGGUG

1 no match

12183 ACCCUUGAUAAACUGUUGACUUUCGG

1

1 transposon

LINE

Rt1b

12184 UCGAAAUCCAAUUCCUCCAGUUCU

1

0 transposon

LTR

Quasimodo

12185 AACCCCUGAACGUGCCCCGAUCUCGUC

1 no match

12186 UAUGACCAGCUUGGACCGAACACU

112187 ACGGCCAUACCACCCUGAACGCGCCCGAU

1 no match

12188 CGAGAUAGUACGAAUCGGGUACGAA

112189 CAGCUAGACUAUGUAUCCCCCGGGUAA

1 no match

12190 GCCUAAGCGAUGUGUGGUGCAAGUCA

1

0 Su(Ste)

12191 UACGGCCCGGACUGCUCCACGCCCAAAA

1

0 transposon

LTR

ninja-Dsim-like12192 GUCCCAAUUCAAGAAGUCGGUGUACC

1

1 transposon

LINER1-element12193 GAUCAGGGGAAAGCCGAGAAACGAA

1

0 transposon

LINE

Cr1a

12194 CCGAAUUAAUCGCGAGGCUGCA

1

0 transposon

LTR

mdg3

12195 GCACACAGAAGGAGAGCAGAUGAGAGCA

1 no match

12196 UACACAAGAUGACGACAUUAAUGCA

1

0 transposon

LINE

G2

12197 GCAUUCAAUACAGCGAGAUGGCCUA

1

0 transposon

LINE

Quasimodo

12198 ACGUUACUGACAGAAUAAGCACCGG

1 no match

LTR

17.6
CG12717-RA¦CG12717
Su(Ste)CG5642-RA¦CG5642

LTR

opus
CG8442-RA¦Glu-RI

0 coding gene

CG5252-RA¦Ranbp90 transposonLow̲complexity

F-element

1

0 transposon

LTR

blood

1

2 transposon

LINER1-element

rRNA
LTR

Dm88

0 transposon

LTR

gypsy

0 transposon

LTR

DM88
rRNA

LTR

invader1
rRNA

0 coding gene

CG30417-RA¦CG30417
LTR

diver20 transposon

LTR

gypsy40 transposon

LTR

micropia
CG7176-RA¦IdhrRNA

0 Su(Ste)0 transposon

Su(Ste)LINE

I
Su(Ste)12199 CACCGGGCGGACUUUGCUGCGGACCCUG

1

1 coding gene

12200 ACAACAACAACACCACCAGCACCCGC

1

0 transposon

LTR

CG17935-RA¦Mst84Dd
roo

12201 AGAGGGACGGCCGGGGCAUUCG

1 no match

12202 AGAGCAACUACGAUGGAAGCAAACCG

1

0 transposon

LTR

rooA

12203 AGACAACACAUAUAAAACCCGCCA

1

0 transposon

LINE

G

12204 AUGUCUAUGAGAUGACCGUAAUGAGU

1

1 transposon

LTR

ninja-Dsim-like

12205 GUAAAGGUGGAAAUGAAGAAAGUACA

1 no match

12206 AAGACAAUGAGAGGUACUUUGACCAA

1

0 transposon

DNA

12207 AGAGAGAACUCGGGUGAAGGAACUAGGC

1 no match

12208 CAACAAGACCCUUGGAAAUCUAUCGA

1

12209 CAACGUAGGGGGUGGUGCAGUA

1 no match

12210 UGCUCGCCGAAUCCCGGGGCCGAGGG

1 no match

12211 CCAUGGUUGCAACGGGUAACGGGGA
12212 AGCGGCGAGGCGGUCGAGGUACUGGU

1360

0 coding gene

CG14938-RA¦crol

1

0 ncRNArRNA

1

0 coding gene

CG10365-RA¦CG10365

12213 UUCAACCAGAUGGGCUUGGAGUAUUU

1

0 repeattrf

12214 CAGAUCAACAAAGUACGAUGGCGA

1

1 no annotation

12215 ACUGACUGUAAUUCUUUAAAGGCC

1

0 transposon

12216 CAUCUUCUUAACGCAGCUGCCGAACU

1

0 Su(Ste)

Su(Ste)12217 AACACGUGCGCGAGUCGGGGGC

1 no match

12218 AUCCUCAACUGUGAGGGAUCCUCUAA

1 no match

12219 GCAAACCCAAAAAGACAAUACACGACA

1

0 repeattrf

12220 AUGUUUCAUCGUUAGACGGCUCGGGCG

1

1 AT-chX

AT-chX-B

12221 AAACGGUGUUAUUGUGGGCCGGUAC

1 no match

12222 AUAAACGUUAACCCGCUACUCGCCGC

112223 AGGCGCGGGUAGCCCGUUGAACCCC

1 no match

12224 CGCACCGCCAUCUCGGACGCAUCC

1

1 coding gene12225 UCUGGUUGAACGUGUCCUGAAAGU

1

0 Su(Ste)

12226 GCCUGAAGGAAUGAGGGUUUUCCCCG

1

0 transposon

12227 UAUAUUAAAGUUGUUGCGGUUAAAACG

1

0 ncRNA

12228 UGCUCUCGAACGUAUGCCCGAUAUA

1

1 transposon

12229 CCCUGUGGACCCUGUGGACCUUGUUGCG

10 coding gene

12230 CGCAGAGUACGGGGCCUACUGAA

1

1 transposon

12231 AUUCCGAUAACGAACGAGACUCUGGC

1 no match

12232 ACCAGAUGGGCUUGGAGUAUUUCAG

112233 UGGAAUCCGAGGUGCCGUAGAU

1 no match

12234 GCGAACGUUGCGAUACCAGUCCUUU

1

1 transposon

LINE

INE-1

12235 AAGGACAUUUUGGAAGAGUUCCAG

1

0 transposon

Simple̲repeat

I12236 GCAUUCAAUACAGCGAGAUGGCCCUAA

1

2 transposon

LTR

Quasimodo

12237 GUGUAACAACUCACCUGCCGAAGCUA

1

1 ncRNA

12238 UGUGAGAGGCCCCGGGUUCGAUCCCC

1

0 ncRNA

12239 ACAUUCAUAACCGAGCGGCUGUUCAA

1

1 transposon

LTR

GATE

12240 AGAGCGUCCGACGAAUACCCUGGG

1 no match

12241 CCAAUUACAUUAGACGAGACGGCCC

10 transposon

LTR

opus

12242 UCUCUUUAGUAAUAACUCGAUAUUU

1 no match

12243 ACGAGCGCACGGUGUUAGGACCCGAAA

1 no match

12244 ACACAGAGGAGAGCAGAUGAAGCA

1 no match

12245 CCGUUGGAUUAUGCCUGAACGCC

10 ncRNA

12246 UACGCAGACAGAGCAAAACCCAUGA

1

0 transposon

12247 GACGCGAUGUGAUUUCUGCCCAG

1

2 ncRNA

12248 GAUUCCAAGAAGAUUAACAGUGACA

1

0 no annotation

12249 UGUUCCCCGGAUAGUUUAGUUACGU

10 ncRNA

12250 UGCAACUCGAGCGACGCCGUCUCU

1

0 transposon

12251 CCUAUUGGAUAGUCCCGAAGAAACC

1 no match

12252 UGGCUCCGGGGGAAGUAUGGUUGC

1

1 ncRNA

12253 CAAACCGAUAUGCUAUCUUGG

1

0 transposon

LINE

Doc

12254 CCCGUAAACCGCCAUCAGCAACACACC

1

0 transposonLow̲complexity

F-element

12255 UGAGUAGAGCUCCGAGACCCCAG

1

0 repeattrf

12256 GUAUACCUAUACAUUACCGCAAA

1

1 ncRNArRNA

12257 UGCGGUGGUGCAGUCCGACAUGAAGC

1 no match

12258 ACUUGAACGAUCGGUUACUCGUCAAC

1

0 transposon

12259 UCAGAUAAAAACGUGUUAGUAAAUAUA

1

0 no annotation

12260 UUUGUCAAUAAACAAGAUUCCCGAAA

112261 UCAACGUGAGGGGAUCCUCAA

1 no match

12262 CAACUCGUUACAAUCGUGUCUACGAC
12263 GACACUAGACAAUAACGACCGGAUA

0 transposon

LTR

LTR

micropia

opus
CG7235-RA¦Hsp60C
Su(Ste)LINE

R1-element
rRNA

LINE

R1-element
CG17945-RA¦Mst84Dc

LINE

0 repeatbaggins
trf

rRNA
tRNA

rRNA
LTR

297
rRNA
rRNA

LTR

Quasimodo
rRNA

LTR

micropia

0 transposon

LTR

micropia

1

0 transposon

LTR

opus

1

0 transposon

LTR

RR5020712264 UCAAAUAUUAUUUAAUUUAAUAUUCGC

10 repeat12265 GAACUUGAGACCCCAGCCGCUCCUC

1

0 no annotation

12266 CUGAAACAAGAAGAGGACGACGAUC

1

0 transposonLow̲complexity

F-element

12267 UACGACGAGAACGAGAUCAGCGAGU

1

2 transposon

LTR

frogger

12268 CCCCCUGCGUAUCGAUAUAGCCGA

1

0 coding gene

12269 ACCGACGAGGAUCAGUUGAAAGUCGAA

1

0 no annotation

12270 AUUGAGAGGCGCCGUAGUUACCACCC

1

1 no annotation

12271 UCUAGAGACAUAGACAGCGCAAGU

1

0 transposon

12272 AAGAACAAAAAGAGGACUUCGAGUAG

1

0 no annotation

12273 AGAACGCUGAACGAACCCGAAAUCAAC

1

0 transposon

12274 GAUUCCGUGGGUGGUGGUGCAUGGCCG

1 no match

12275 UGUGGUCGACUCGGAUGCAGUGCCGCGC

1

1 coding gene

12276 CAAUCCAGAAUGUUCUCCUUGAGU

1

1 transposon

12277 ACAACCGGACGGGCCUAGAGUUAUU

1

1 coding gene

12278 UAACAAGAUGCAUACGAUGUGG

10 transposon

12279 UGUAUCUAGGACUACCAUGGUUGCAA

1

1 ncRNA

12280 AGAUCAAGAAUCCCGUGCCAAGACUGUC

1

1 transposon

12281 UAAUCGAGCGCCUCACCUAUCACAU

1

0 coding geneAT̲rich

CG1340-RA¦CG1340

LINE

INE-1

LTR

IdefixCG4799-RA¦Pen

LINE

G2
CG40635-RA¦CG40635

DNA

1360
rRNA

LINE

Circe
CG7793-RA¦Sos

12282 AGCGACAUGCUCGAGAUGACAACC

1

0 transposon

LTR

micropia12283 GCCAAUUACAUUAGACGAGAGGCCC

12 transposon

LTR

opus

12284 CAAAGCGUUUUGGGCUCCGGGGGA

1 no match

12285 GCGGGAGUAGCUCAGUUGGUAGAGCGC

1 no match

12286 AACUCAACUGUGAGGGGAUCCUCAA

1 no match

12287 GCCAAUGAAAAACUACACCCAGACGGA

1 no match

12288 AACCCUGAACGCGCCCGAGUCUCGUC

1 no match

12289 GCGGAAAGAGAGCAAUUUUGGCC

10 transposon

LINE

Cr1a

12290 AACAUCGAGAAUACUGCACAGCCAU

1

0 transposon

LINE

Doc

12291 ACAAACCGACCCCGAGCUGUUUGCCGCC

1 no match

12292 AACGGAUGACAAUGUGGCACACGC

1 no match

12293 ACUCGUCGAAUCCCGGGGCCGAGGGAGC

1 no match

12294 UUAGGACCAAAGAUGGUGAACU

1 no match

12295 CCGAAGAACAAUUUUACCUACAAGACCG

1

0 transposon

LINE

G6

12296 CAGACCCAUCAACGUCAACCAGACGG

1

0 transposon

LINE

INE-1

12297 GAUGUUGACCAGUGGAUAAAUGA

1

0 coding gene

12298 CGGUCUGAUUGCCUCAGGGCUAGGA

1

0 transposon

LINE

F

12299 CAAGCUAGACUAUGUGUCCCCGGGUAA

1

1 transposon

LINE

Doc

12300 AGCGAGAUAAAGCGAAAACCGUCUAAA

1 no match

12301 GAGGGCAACCUACGGGGCAUUAUAC

1

1 transposon

LINER1-element

12302 GCCCGGAUAGCUCAGUCGGUAGAG

1

0 ncRNA

12303 CACCAAGAUUAUCAACCCGUGUUUU

1

0 transposon

12304 CUCCGGAGUGAGGCUUGGCCAUUGC

10 ncRNA

12305 UUCCUGGGAUCUGCCAUAUGAUAGGCG

10 transposon

12306 AAAACCCGAGAUGAUCCUGAGUCGC

1 no match

12307 UGUUUCAUCGUUAGGCGGCUCGG

112308 UGCUCCGAAAACAAGGCCCCGUCGCUAA

1 no match

12309 UCAGCCCGAACCCUUCUGGUGUGU

112310 UCCGGUCCCGGGACAUGGCGUGGUGGGU

1 no match

12311 UUAGAUGGGGGACCGCUUGGGAACAA

1

1 ncRNA

12312 CAUCGCUGAGGCCCACUGGCAGGGUG

10 Su(Ste)

12313 AAAAACCAAAAUAUCCUGAUUCAAC

1

0 transposon

12314 GGGGGGGCGGCGGGACCGGGGG

1 no match

12315 GAGAUUCAAACAACGAACGCCGCGGGUG

10 coding gene12316 ACCCGAAAGCAGACGAGGUAACGUACC

1

1 transposonLow̲complexity

F-element

12317 GCCACACGCAUCCUAGAAUCGACCGA

1

0 transposon

LTR

flea

12318 AACCAAGCUUUUGGGCUCCGGGGG

12 ncRNArRNA

12319 AAUCGCUCGAUGUCGUAAGGUGACCG

1

0 coding gene

CG40609-RA¦CG40609

12320 CGCUUUGCGUGUGAGAGGCCCCGGGU

11 ncRNA

12321 CAAGCUAGACUACGUAUCCCCGGGUAA

1

1 transposon

LINE

Doc

12322 UCGAGAUUUGUGUUAGCCACUGAGA

1

1 transposon

LTR

G4

12323 GGGAAAGGCGAAAAGAACCCCGGAG

1 no match

12324 AAGAAGGCCAAGACGACAACCGG

10 coding gene12325 GAAUGCCGCAGCGAGGAGGAGGACUA

1

1 Su(Ste)

12326 GAGGAAAUCAUUGAAGACCUUCGCAGA

1

0 transposon

12327 CGACGCGAGAGGUGAAAUUCUUGGACC

10 ncRNA

12328 AGUAGCCUCGAGGAAAUCCAGACGA

1 no match

12329 CUAGUUAUAACGCCAAGUCUGGACCGA

1

1 transposon

LTR

G4

12330 CCCGAAAAAUCCCCGGCUACGACCU

1

2 transposon

LINE

F

12331 CGGGAUAAGGAUUGGCUCUGA

1

0 ncRNA

12332 ACCAAAGUCUUUGGGUUCCGGGGGGAG

1 no match

12333 AAAACCUGAAGAUGAUCCUCAGUCGC

1

1 transposon

12334 CCGGCUAGCUCAGUCGGUAGAGCAUG

10 ncRNAtRNA

12335 GUACUUCGGGAUAAGGAUUGGCU

12 ncRNArRNA

12336 ACGGUGAAUACGUUCCCGGGCCUUGUAC

1 no match

12337 AAAAACCUGAAGAUGAUCCUGAGUCUC

112338 UUCAAGGUUACCCCCAGGAUGCUGUGCC

1 no match

12339 UGCAUCCCAAUUUAGGCGCCGCAA

1

12340 AACUCGCCGAAUCCCGGGGCCGAGGG

1 no match

12341 GGGAUCAACUGGGAGGGGAUCCUCAA

1 no match

12342 CGUACAACAUAUUUCGACGAACGGUGAC

1 no match

12343 UCGAUGGCGACUACCUCCGAUGGC

112344 GGGCCACCCCUUCCACGGCGCGACCGC

1 no match

12345 ACGUAAACAACCCCAGGCUGACUCCG
12346 UGGAACACAUAGAGGCUUCGAGGA
12347 UGCUCUCGAAUGUAUGCCCGUAUAUAC

1 no match

12348 UUCCCUAUGAUGAUGUGUUGUU

1 no match

12349 GCACAGAGGAGAGCAGAUGAGAGCA

1 no match

12350 UCCAAGCGAAUCGAGGAUGCAAAU
12351 UAUUUCAUCGUUAGACGGCUCGGG
12352 CAACUAAGGUGGAAAUGAAGAAAGA

1 no match

12353 GCCCCGAAAACACGAGAGCCGAGCGCUGGU

1

1 transposon

12354 AUACGAAACCAAACCGUAAAGA

1

1 no annotation

12355 CCGAACUUGAGACCGCCCCUGGACAA

1

0 Su(Ste)

Su(Ste)12356 AAGGAGUGUGUAACAACUCACCUGCC

10 ncRNArRNA

12357 ACACAUGCAAGUCGAGCGGGCCCU

1 no match

12358 AUUGUUCCAAACACUUACUUGUCCGC

112359 CGGAGAAGCCGGCGGGAGCCCCGGGGAGA

1 no match

12360 CGUACUAAAACAAAAACCUCCGCGUGC

112361 CGGCACGAGACCGAUAGUCAACAAGUACC

1 no match

12362 UACAUCGAAAAGCGAGUCGACGUA
12363 CAAGCUAGACUAUGUAUCCCCGGGUC
12364 UAGUAACAUAUCUCGGCGUUCACCUACG40084-RA¦CG40084

tRNA
LINE

snRNA
LINE

1 AT-chX
1 transposon

Cr1a
Rt1b
AT-chX-B

LINE

baggins
5SrRNA
Su(Ste)LINEDoc
CG33935-RB¦mei-217

tRNA

CG7590-RA¦scyl
Su(Ste)
LINE

G6
rRNA

rRNA
LINE

Helena2 transposon

LINE

Helena0 transposon

LINE

Cr1a

0 transposon

LTR

Max

1

0 transposon

LTR

Max

1

0 transposon

LTR

HMS-Beagle

1

0 transposonDNAtransib2

1

1 AT-chX

AT-chX-B
LTR

opus

0 transposon

LTR

opus

0 transposon

LINE

Rt1b

1

1 transposon

LTR

invader4

1

1 transposon

LINE

Doc

1

0 transposon

LINE

Doc2

12365 CAGCAGCCUGUAAUUCCAGCUCC

1 no match

12366 CCGCAGGUACGGACCAAUGGCACAA

1

0 repeat12367 AACUGACGGCGCCACUGUAAAUGUGUA

1

2 transposon

LINER1-element

12368 CACCAUAGGAGGACCGUCGUAUACA

1

0 transposon

LINEbaggins12369 GCCCAAGCACGAGUCCCACUACGCCUC

1

1 coding gene

12370 CAGACAACUAGACCGAUUUAUUCCA

1

0 transposonDNAtransib2

12371 ACGAGCGCACGUGUUAGGACCCCGAAA

1 no match

12372 ACAUAACGGAACCGCUAGCAGAUCGCGA

1

0 transposon

LTR

opus

12373 AAUGCUGGACGAGGGUAUGGAGUU

10 coding gene

CG13340-RA¦CG13340

12374 AAAGCACCGUUUCCCGUCCGAUCAACUG

1 no match

12375 UGACUUGGGUAUAGGGGCGAA

1 no match

12376 ACAUCAUAACCGAGCGACUGUUCAA

1 no match

12377 GUUCGAUUCCGGAGAGGGAGCCUGAGAA

1

0 ncRNArRNA

12378 AACGAUGGCGGCGCUGUCUCACCCG

1 no match

12379 GCAUUCGAGACCCAACGACACACAU

1

0 transposon

12380 AGGAAUUGACGGAAGGGCACCACCAGG

1

0 ncRNA

12381 AACUGUGAGGGGAGUCCUCAA

1 no match

12382 AAGAUAAUAUUCCGAUACAUUUUCC

1

0 transposon

LINE

Circe

12383 UCUCCACGAACGCACAGCUGAAGA

1

0 transposon

LTR

ninja-Dsim-like12384 GCGGCGAGGACUUCGAUAACCGGCUGGU

10 coding gene

CG8937-RA¦Hsc70-1

12385 ACUCGAAUGAGUGCUUGAUAUGACG

1

1 Su(Ste)

Su(Ste)12386 UGCCCCAAGAAGCGCGCCGUGAUCAAU

1

0 coding gene

CG10045-RA¦GstD1

12387 UUCAGAAUACCCGGGCUUGAACUUCGG

10 repeattrf

12388 UGGGGAUAACAUGCUGAUACCGCCCAA

1 no match

12389 UAGGAUGUUGGUGAAAUGGCUUUAA

1 no match

12390 UGCUAGAAGACGAAUUUACACGAGGAAU

1

1 transposon

DNA

12391 GCUAGAGAGUUGCCGGAGCUGGAGU

10 transposon

LTR

ninja-Dsim-like12392 UAAACUCACAAUUAGGUGGGUCCCGGGA

1

0 transposon

LINEbaggins

12393 UUACAGACUUAGCCCCCGAAGAGA

1 no match

12394 UGAUUAAAUGGAACGUGUAUCAUUUCC

1

0 repeat12395 UACGAACAGAAUACGAGUUGAUGGA

1

0 no annotation

12396 CUCCCCACGGAACACCAGAGCAAUCCCACC

1 no match

12397 UUCACCAAGCGUUGGAUUGUUC

10 ncRNA

12398 CAGCACUACCACAGCUGUAAAGGCCA

1

0 transposon

12399 UGGACCGCGAGGAUGCCCAGAACCAGG

1

0 coding gene

12400 AGGAACAAGCCGUUACCACCCCGUAG

1

0 transposon

LINE

INE-1

12401 CAAACUGUAAUUCAAGAGGACACAAA

1

0 transposon

Unknown

RR50960

12402 UCCGGGAACAUGCCACCUCCGUUGAU

1

1 coding gene

12403 UGUUUCAUCGUUAGACGGCUCGGGCC

1

1 AT-chX

12404 CCUGCAUGAAGAUGAUUCCGAAGAU

1

0 transposon

LINE

Circe

12405 UAUUACAAUAAGAAAUAGCACGCGA

1

0 transposon

LINE

TART-A

12406 UGGUCACCAGACGUUGGGGUUGAUGCA

1

0 no annotation

12407 ACCGAUGGCGAAGGCAGCUCCCUGGGCC

1 no match

12408 ACGUAGGUCCCGAGCGUUGUCCGGAUU

1 no match

12409 UGACACAAUGUGAUUUCUGCCCAGUGC

10 ncRNA

12410 AAGAGCAUAAAGACGACGAAAGUGACAC

1

2 transposon

12411 ACACACCCAUUGCAGACAAAGGAU

1

0 coding gene

CG12051-RA¦Act42A

12412 CUGAAGUGGAGAAGGGUUUCGU

10 ncRNArRNA

12413 UUGAGGCACCAGUCUCCUCGGAG

1

1 ncRNAtRNA

12414 GUUGCUUUUUGAUCCUUCGAUGUCGG

1

1 ncRNArRNA

12415 AACUUCGGGAUAAGGAUUGGCUCUGAAG

1

0 ncRNArRNA

12416 AUGGCUCUCUCAGUCGUUUCUCGCGAC

1 no match

12417 CUGACAUUACAUCAAAAUUUUUUGA

1 no match

12418 GCGCAUCUUGGGAUAGGCCUUAAUCUG

1

2 no annotation

12419 UGGAACAUAACGCCAAGCCGUGAC

1

0 transposon

12420 GAUCCUCAACUGUGAGGGGAUCCUCUAA

1 no match

12421 AGCCGUACCUGUUGGUUUGUCCCAUUAU

112422 GCACACAGAGGAGACAGACUCGAGAGCA

1 no match

12423 AGUACAAGAAGGAUCUGCGCUCCA
12424 CGAACUUGAGAUCGCCCCUGGACGACCC

LSU-rRNA̲Dme

CG6298-RA¦Jon74E

LINE

Rt1b
rRNA

1360

LSU-rRNA̲Dme

rRNA
LTR

Stalker2
CG5020-RA¦CLIP-190

CG1763-RA¦nod
AT-chX-B

rRNA
LINE

LTR

Doc3

Quasimodo

0 ncRNArRNA

1

0 coding gene

CG18743-RA¦Hsp70Ab

10 coding gene

CG42398-RA¦SteXh:CG42398

12425 GUGGCAUGUUUCCGGAUUCCCGACA

1

1 ncRNA

12426 GGUGACGGCCAAAUUACUCUCUUU

1

1 transposon

DNA12427 AUACAUCGAAAAGCGAGUUGACGUGU

1

0 transposon

LTR

gypsy

12428 UCUGUAGUUAGCUUGUCCCUCGA

1

2 transposon

LINE

R1

12429 AUCCUUAACAAGAACGACGUUGUCCA

1

1 transposon

LTR

diver212430 CGCACUAACACCAUCGCACACCCGA

1

0 transposon

LINE

G6

12431 CCGACAAUUAUAGUUUCCUGUUCGCC

1

2 transposon

LTR

Idefix12432 GCUGCGUUAAGAAAAUGUCCGGACA

1

0 Su(Ste)

12433 ACUCGCCGAAUCCCGGGGCCCAGGGA

1 no match

12434 GUUCCAGUCCCGUACGUAACUCCA

1 no match

12435 AUAAUACACAUCGAUCAUUACGGACCA

1

0 transposon

LTR

diver212436 CACAGAGUACGGGGCUUACUAAU

1

1 transposon

LINEbaggins

12437 AACUGGCGAUGCGGGAUGAACCGA

1 no match

12438 AGACUGGCGCUGCGGGAUGAACC

1 no match

12439 AGCAACAACUCGAUUCAGCUAUGCACC

112440 CGGUCCCGGGACAUGGCGUGGUGGGUA

1 no match

12441 AGGGACGGCCGGGGGCAUUCGUAUUGC

1 no match

12442 ACAUGUCAUCCAGACUCAACACGA

1

0 transposon

LTR

Idefix12443 GUUCAUGUUAAGGACGAGAAUCUACC

1

0 transposon

LTR

diver212444 ACCAGAUCAUCAACCCGUGUUA

12 transposon

LINE

Cr1a

12445 GCCGAACUUGACAUCGCCCCUGGACA

1

1 repeat12446 CAAUUCUGCAACUCGAGCGACGCCGUC

1

0 transposon

12447 GGAUCCUCAACUGUGAGGGUAUCCUCAA

1 no matchalphagamma-element
1360

Su(Ste)0 coding gene

CG8982-RA¦Acp26Aa

trf
LTR

Quasimodo

12448 UAGGGAGCGAGAGAGCGGAGAGCGC

1

0 transposon

12449 GCCCUCGUCUCGAUGACACAGCUGGUGG

12 coding geneDNA12450 UUGCCACACCAAGACAUGUUGUACCC

1

0 transposon

12451 AGAUGGGGGGACCGCUUGGGAACAC

1 no match

12452 CAAGGAGACCUGAGACUGAGUGUU

112453 GAAACUUAAAGGAAUUGACGGAAGAAA

1 no match

12454 ACGUAACUAUACACUUCAUAAAGACC

112455 CUGUAACUCGGGCUGUAACUCGGG

1 no match

12456 UGGCUCUCUCAGUCGCUUCCCGG

112457 ACUCGCCGAAUCCCGGGGGCCGAGGGGA

1 no match

12458 GGGCGACUGUGAGGGGAUCCUCAA

1 no match

12459 AACGACAAAAGUAACGGCGAACAUG

1

0 transposon

DNA

H

12460 UUAAGCGUUCGUUGACGUUGAUGGC

1

0 transposon

LTR

HMS-Beagle

12461 AACCAAAUGAAAGACAUGAUGCGAC

1

0 transposon

LTR

Quasimodo

12462 GAACCGUCAUUCCAGCGCAAGUUGCCCC

1

1 transposon

LTR

ninja-Dsim-like12463 ACUCGAAUCAACAAAUUGCGCCGG

1

1 coding gene

CG41545-RA¦CG41545

12464 CUUACCAGGUCCGAACAUAAGUGUGU

10 ncRNArRNA

12465 GGAUCCUCAACUGUGAGGCGAUCCUCAA

1 no match

12466 CAACGAACGGUUAAAGUGCGAUCA

1

0 transposon

LTR

HMS-Beagle

12467 GCCAGUUACAUUAGACGAGACGGCC

1

1 transposon

LTR

opus

12468 UCACCCUGAACGCGCCCGAUCUCGU

1 no match

12469 UGAGAUAUGCUAGCAGACUUGAGA

1

1 transposon

LINE

G2

12470 GUUCCUCGGGAUCAAGGGCAACGAGUUA

1

1 coding gene

CG40635-RA¦CG40635

12471 AGACUUAUAUCCGAGGCCCUGUAAU

1

2 ncRNArRNA

12472 UCGCCAGAGGAUGAGCCCGCGUAG

1 no match

12473 ACGCUGACGAGUGGCUAACGGGU

1 no match

12474 CUGACAUCUACUCGACUGAACGACA

1

2 transposon

12475 UGCUGAUGAAGAUCCGUCUUGGCCG

10 coding gene

12476 CUGCGACGAGCAAGGUGGCCGCCGGGA

1

0 coding gene

12477 AACGAAAGGGCACAAGCAACCAGA

1

0 transposon

12478 CAUGCAGAUCGUAUGGUCUUGUACCGA

10 ncRNA

12479 AACGCCAAGCACACCCAUUGGGGAUCU

1

0 transposon

12480 CGCAAGCGUCACUUCCAGGCUCCCUCC

1

0 coding gene

CG6846-RA¦RpL26

12481 AGACGGCGAUCGAGUGCGGAUAUUACG

1

0 coding gene

CG11262-RA¦CG11262

12482 UGUUUCAUCGUUAGACGGCUCGGUC

1

1 AT-chX

AT-chX-B

12483 AAAUGAGAACUUUGAAGACUGAA

1 no match

12484 UAUGUGCGAGGAGCCCGUGUUCGACU

1

0 coding gene

CG5497-RA¦mRpS28

12485 UGUUCAUCGUUAGACGGCUCGGCGU

1 no match

12486 UAGUAAAUCACACACCUCUAUCGAAGA

112487 AAGAGAUGGGGAAGCUCCGUUUCAAA

1 no match

12488 UGCUAUCCGAAUAGACCGCGGCGUAA

1

0 coding gene

12489 CUUUAAGGGCUGAGUACAAACA

1

0 transposon

DNA12490 UAAGACGCCUGCAGAGAACGCACCCG

1

0 transposon

LINE12491 GAUUCCGGAGAGGGAGCCUGAGAGACG

1

1 ncRNA

12492 AACUACAACACAUCGAGCGACCGU

10 transposon12493 GUCAGAAAAGUUACCAUAGGGAUA

10 ncRNA

12494 AGCACUAAUAUAAGCCCUGACGUCCGA

1

1 transposon

LTR

G4

12495 GGUCCUGAGAGAUUGGCGAGCGCCGUUC

1 no match

12496 AACCUGAAGAUGAUCCUGAGUCGCA

1

0 transposon

LINE

Helena12497 CAGAGCGUGGCCUGAUUGCUAUGCACCGA

1

0 repeat12498 AAAUACCAUUGCAAGCUUUACACGC

1

0 transposon

12499 GCUAAUCCCACUGCCAUGCUGCUCUGUC

1

2 coding gene

CG6439-RA¦CG6439

12500 AGAUUGAGAGCUCUUUCUUGAUUUU

1 no match

12501 GAAAUCGGAAAAUCACACCUUUUGACC

1

0 repeat

RSP

12502 AGAAACGUGAACUCGCCCAGUGGUC

1 no match

12503 UCCGAUAACGAACGAGACUCAAAUAU

1

0 ncRNA

rRNA

12504 AAAUUUAUAUCAGCCCGUAUCCAGCCAU

1

0 coding gene

12505 CGAGAUGACAACCUUGGACCUGACCC

1

1 transposon

LTR

micropia12506 GACAAGAUAAACCAGCACUCAAGCA

1

1 transposon

LINE

X

12507 UUCCGGCACAAUGCGCAUGAAUG

1

0 no annotation

12508 CAGAAGCAUAAAGAGUGCACCUGGC

10 transposon

DNA

S

12509 CUGAACGCGCCCGAUCUCGUCUGAUCU

1 no match

12510 ACGAGCCACGUGUUAGGACCCGAAA

1 no match

12511 CUACCCGUGAGUGUCCCAAGACUUC

1

0 no annotation

12512 AAGCUUAUCCUUUGCUUGAUGAUUCG

1

0 ncRNA

12513 CAGUCCGAAACACAUCCCCCGAUUAAA

1

0 no annotation

12514 GUCUCAUCGUCGUAGAACUAGCCCGA

1

1 Su(Ste)12515 AAAGCCUAAAAAUGUUAUUUGGAA

1 no match

12516 AAAUUCCGUAAACGAAGCCCAAAGUUCG

112517 AUCGAUCCUUUAGUCCCUCGGAAUU

1 no match

12518 ACGGGAAAGCUUACCAGGUCCGAA

1

1 ncRNA

12519 AAACCGAGUGAUUCAGAGUAUGCAUC

1

0 transposon

12520 GAGAGAAGACCCUCAGCCUACGAG

1

0 coding gene

CG41521-RA¦CG41521

12521 CGCGGAAAGACGGAAAGACCCCAUG

1 no match

12522 AGUUCCUCGAGAAGCCCGUCCAGAAGCC

1

0 coding gene

CG6066-RA¦CG6066

12523 UAGCCGGGGCGAGGACGGAGGACUAGCUG

1 no match

12524 GCAGUUAUUACUACGAGAAGAUGGC

112525 UGCUCUCGAAUGUGUGCCCCGAUAU

1 no match

12526 UAUCUCGAAAGACUCGUUCCGGUCGA12527 UGAUCAAACAAGAAAUGGUACUCGGA

LINE

0 coding gene
0 transposon

1360
CG5539-RA¦CG5539
F
CG10637-RA¦Nak

LINE

0 ncRNA

HelenarRNA

LTR

HMS-Beagle
CG3561-RA¦KH1
CG8136-RA¦CG8136

LTR

3S18
rRNA

LINE

Doc

0 no annotation

1 transposon

CG12861-RA¦CG12861
1360
G2
rRNA
LINE

Doc3
rRNA

trf
LINE

F

CG8701-RA¦CG8701

rRNA
Su(Ste)
LTR

Rt1c
rRNA

DNA

invader2

1 transposon

Unknown

RR50960

1

1 transposon

LTR

G4

1

0 transposon

LTR

DM88

12528 GUGAUCACUGUGACGCCUUGCGUG

10 ncRNA

rRNA

12529 CGCCCCGGGGAGCCUGGCGCGC

1 no match

12530 GGCGCGUAAAUUACCCACUCCCAGCUCG

10 ncRNArRNA

12531 AAGGAGUCUAACACGUGCGCGAGUCG

1 no match

12532 GCCCCCAGUGGCCUAAUGGAUAAGGCAUC

12 ncRNA

12533 AGCUACGAGAAUAUACCGCAAACC

1

0 transposon

LTR

gypsy1212534 AAUAGCGACAACCAGAGUUCCCAGU

1

0 transposon

LTR

Dm88

12535 CAUCAUGAUAACGCACCGCCUAGU

1

0 transposon

LTR

opus

12536 UUCUGUGAACGAGUGAACUGGCAA

1

0 Su(Ste)

Su(Ste)12537 UAAACCGUCAUCCAGCGCAAGUUCC

1 no match

12538 GGCGCAAUGGCACAGCAUCCUGGGG

12 repeattrf

12539 GGAAACUUUAACUCGAGCAGCGACUAC

1

0 coding gene

CG34407-RC¦Not1

12540 AAAAGCCGAGCACUACUAAUUGCCC

1 no match

12541 GCGAAGGUGGCGGAAUUGGCAUAG

1 no match

12542 GGUGAAUACGUUCCCGGGCCUUGUACACA

1 no match

12543 AACGGGGCUCAAACCAGGUACCGAA

1 no match

12544 ACGAGUAAUAUGAGCGCCCAGAGUGAA

1

1 transposon

LTR

opus

12545 CUGUAACUCGG

10 transposon

LTR

gypsy912546 ACCAAGCGUUGGAUUGUUCACCCAUGCA

10 ncRNA

12547 UAUACCAACAACAGAUAAUAUACCGAU

1

0 transposonLINEaccord2

12548 UAAUAAACUUGACCAUGUUUCCCCCGGGA

1

0 transposonLow̲complexity

F-element

12549 ACGGCCCGAACCCUUCUGGCGUGU

12 transposon

LINEbaggins

12550 AGCCCAGAUCUACGCCAUCCGCCAGGCC

10 coding gene

CG4046-RA¦RpS16

12551 AACUGAUAACGAAAUGGAUGACA

1 no match

12552 AUGCCGAUGGUGCCGACCCUGGAGCU

1

0 coding gene

CG13340-RA¦CG13340

12553 ACGCCCAGAGCAAACACAGUGUGGCG

10 coding gene

12554 CCAGACGUGAUACUCCUCUACCCAGU

1

0 transposon

LTR

HMS-Beagle

12555 AAAACCAUUCGUAGACGACCUGCU

1 no match

12556 UACCAAACGAAGUCCUACCAUAUGC

1

1 transposon

LTR

flea

12557 CGGUGAGGGGAUCCUCAA

1

2 coding gene

12558 CAAACCAAUCCCCAACCAAACCCGUCAAA

1 no match

12559 UCAGAAAUUAUCCUGUCCCUCAUGA

1

0 transposon

12560 CAACGACUCUCAGCGGCAGGCCACC

1

2 coding gene

12561 AAAACCUGUAGAUGAUCCUGAGU

1

1 transposon

12562 GGAGAAGCUGGCGGGAGCCCCGGGGA

1 no match

12563 ACCCUCAACUGUGAGGGGAUCCUCAA

1 no match

12564 ACCUGAUUGAUAGAGUAGACACGA

1 no match

12565 AGAACAACAUCCUGCAACUUGAUCCGC

1

0 coding gene

12566 GGCAUUGAGAGGCGCCGUAGUUACCACCC

1

1 no annotation

12567 GAACUUGAGACCGAACCUGGACGACCC

1

1 no annotation

12568 GCGGCGUCCGGUGAGCUCUCGCUGGCC

1 no match

12569 UAACCAAUGAAGUCCUCCUGAGG

10 ncRNA

snRNA

12570 ACCAAGAUGAAGGAGACCGCCGAG

1

0 coding gene

CG4264-RA¦Hsc70-4

12571 GCAAUCGUUUUAGACGAGUAUUCCGA

1 no match

12572 UGGAGACGGUAGCAGGCCGAUGG

1

0 transposon

12573 UACUGCCGAAGCCUUCCCAGAGAGUU

1

1 coding gene

CG6289-RA¦CG6289

12574 CUACAUAUGGUUGAGGGUUGU

10 ncRNArRNA

12575 CCAGUUACCGAAGCUGCGGAUUUGC

1 no match

12576 AACUACGAAACCCAAACUCCCGGACA

112577 AACCAAAGCUUUGGGCUCCGGGG

1 no match

12578 ACGGGAAAACUCACCAGGUCCGAA

1

12579 UCGUUAGAUCCAGAAUAUUUAAA

1 no match

12580 CCCUUCGAGGCGGGCGCGUAUUUCAA

1

0 coding gene

12581 UCUUGGUGACAUAGUAACUUCUGA

1

0 transposon

12582 GUCGAACACCGGCUUCAGGAUCACGUCC

10 Su(Ste)

Su(Ste)12583 CCACAUCUAAGGAAGGCAGCAGGCG

10 ncRNArRNA

12584 UCACGAAUAACAGGACCAUCCAAGA

1

1 no annotation

12585 GCUUUAAUCACGAGCAAUGCGUUGAACG

1

1 no annotation

12586 GGCUCCGGGGAAGUAUGGUUGCA

1 no match

12587 CUUAGAUGUCCGGGGCUGCACGCGCGC

112588 GUACGGAAGACCCGCUCCCCGGCGC

1 no match

12589 UAAUUCGGCCCGAACCCUUCUGGUG

10 transposon

LINEbaggins

12590 CCUACAAACAGUACACCUACUAGCCCA

1

0 transposon

LINEbaggins

12591 AGCGAAACGAGCUCGAGGAAUACGG

1

0 transposon

LTR

ninja-Dsim-like12592 UCCGCCCCCCGGCCCCGCGUCCUCCCU

1 no match

12593 AAUAAAUAAAAGGUGACCGGCAACGA

1

0 AT-chX

12594 AUCGUGUGAACUGCAGGACACAUGAA

1

0 ncRNA

12595 GCAGAAUUGAGUCUGUUUUCCCAGGA

1

0 transposon

12596 UCCCGUGGUAGGCAGUAGUGGGAU

10 ncRNA

12597 CUCGGCCUAUCGAUCCUUUUGGUUUAA

10 ncRNA

12598 UACAUACCUGAGAAAUCUUCAAAGU

1

0 transposon

LINE

Cr1a

12599 UCGUAUACUGCUUCAACACGACCCA

1

0 transposon

LTR

Tabor

12600 UACAAUGAUCUGACGGGUUUUUCUG

1 no match

12601 CGGGGCUAAGCCAGUUACCGAAGCUGCG

1 no match

12602 ACACAGAGGAGAGCAGAUGAGAGA

1 no match

12603 GCGGCCCCCUGGACGAAGACUGACGC

1 no match

12604 CCUGAUGGAAGACCGAAACAGUUCUGA

112605 AUGACACAUAGGGCUUCGAGG

1 no match

12606 UUCGAGAAGCGAACCCGGCGAACUGAA

1 no match

12607 AUAAUCAAAACAUCCGAUGACGAA

1

0 transposon

LTR

McClintock

12608 UGAGCAUAAAGACGACGAAAGUGAC

1

1 transposon

LINE

Doc3

12609 GACUGCCCUGGAGCGUUCGACCAACA

1

0 coding gene

CG4264-RA¦Hsc70-4

12610 AAAAUAUAGCUCAGUGGUAGAGCAUUC

1 no match

12611 GACCGAAACAGUUCUGACGUGCAAAUC

1

0 ncRNA

rRNA

12612 ACAGACUCGGAACGCCUCAUUGG

1

0 coding gene

12613 CAAGACCCACGGGAUGACUUCUUU

1

0 transposon

tRNA

rRNA

CG1999-RA¦CG1999

CG4584-RA¦dUTPase
LTR

Stalker2
CG31359-RA¦Hsp70Bb

LINE

HelenaCG1945-RA¦faf

LTR

GATE

1 no annotation
1 ncRNArRNA
CG31648-RA¦CG31648
LTR

1 ncRNA

297

rRNA

AT-chX-A
rRNA
LTR

GATE
7SLRNA-RArRNA

0 ncRNArRNA

CG31359-RA¦Hsp70Bb
LINE

BS

12614 GGCAUUGAGAGGCGCCGUAGUUACC

112615 GCCCGAUGCCGACGCUCAUCAGUACCCC

1 no match

1 no annotation

12616 AAGUAGUCUAACACGUGCGCGAGU

1 no match

12617 UUGGAUUGACUCUAGACCGGAAGCUC

1

1 transposon

LINE

G

12618 CUCUGAGAAAGCAGACGCCUGAGU

1

1 transposon

LTR

Max

12619 UUCUUGCGAGGGGAUUCGUAGGUG

1 no match

12620 ACGAUAAAGAGGCUACCUACUAGAGGA

1

0 no annotation

12621 UAACAUCAGACUCAAUGCCCUUCAG

1

0 transposonLow̲complexity

F-element

12622 GUGAUGUCAACGUUUGAUCCCCCUGG

1

2 transposon

LTR

ninja-Dsim-like12623 CCGAAGCCCGGCGAUCUAGGCAUGACC

1 no match

12624 GGCUUUGAGAUGCGCCGUAGUUA

1

1 no annotation

12625 UGGGCAAGAGCAAGAAGCAGGUGCGC

10 coding gene12626 CAGGAUCAAAUAAGUAGACUUCGAGGA

1

0 transposon

LTR

micropia12627 UAGGAGUUCACCGCCACGACGACC

1

0 transposon

LTR

GATE

12628 CUGACCUGUAUUCGGAUAAUGGAACAA

1

0 transposon

LTR

3S18

12629 CUCGAAUGUAUGCCCGAUAUACGGAGC

1

0 transposon

LINER1-element12630 UCCUAGACCGAGAUGUCCGGGUAAACCG

1

1 ncRNA

12631 UGCUCUCGAAUGUAUGCCCGAUAGUGAACC

1 no match

12632 ACAGCCUGAGAGGUGAUGCGUAGCC

1 no match

12633 AGUACUCCAGGCCCAUCUGGUUGA

1

0 Su(Ste)

12634 CCCCUAUCCAAGCUACAGCACAGUU

1

0 transposonLow̲complexity

F-element

12635 GACAAUGUGAACAAGACGAGCGCCGC

1

1 transposon

LINE

Doc

12636 UGAUACGAGGGAGAAUUGUGAGUCGGC

1

0 transposon

LTR

Rt1c

12637 UAGCCACUGAUAUGCGCCCGUUUU

1

0 no annotation

12638 CAACGACCGAGAUGCUAGCAGACAUA

1

1 no annotation

CG11601-RA¦CG11601

rRNA

Su(Ste)Aub-associated small RNAs
No.

Sequence

Read

Genome mismatch Annotation (category)Annotation (detail1)

Annotation (detail2)

1 UCUCAUCGUCGUAGAACAAGCCCGA

43207

0 Su(Ste)

Su(Ste)2 UGUUUCAUCGUUAGACGGCUCGGGC

13615

0 AT-chX

AT-chX-B

3 UCUCAUCGUCGUAGAACAAGCCCG

6212

0 Su(Ste)

Su(Ste)4 CAGCACACAGAGGAGAGCAGAUGAGAGCA

3971 no match

5 UGUUUCAUCGUUAGACGGCUCGGG

3013

0 AT-chX

AT-chX-B

6 UAGAUCUUCACCGUUGACUAGCCCCA

1532

0 Su(Ste)

Su(Ste)7 UCUCAUCGUCGUAGAAGAAGCCCGA1183

1 Su(Ste)

Su(Ste)8 UUCUCAUCGUCGUAGAACAAGCCCGA

1138

0 Su(Ste)

Su(Ste)9 UCUCAUCAUCGUAGAACAAGCCCGA1134

0 Su(Ste)

Su(Ste)10 UCUCAUCGUCGUAGAACUAGCCCGA1113

0 Su(Ste)

Su(Ste)11 GCACACAGAGGAGAGCAGAUGAGAGCA

898 no match

12 AUCUCAUCGUCGUAGAACAAGCCCGA768

1 Su(Ste)

Su(Ste)13 UCAACUGUGAGGGGAUCCUCAA

693 no match

14 UCUCAUCGUCGUAGAACAAGCCCGAG

616

0 Su(Ste)

Su(Ste)15 CUCAACUGUGAGGGGAUCCUCAA

578 no match

16 UCUCAUCUUCGUAGAACAAGCCCGA

436

1 Su(Ste)

Su(Ste)17 AUCCUCAACUGUGAGGGAUCCUCAA

392 no match

18 UCUCAUCGUCGUAGAACAAGCCCGAA

334

0 Su(Ste)

Su(Ste)19 UAGAUCUUCACCGUUGACUAGCCCC

328

0 Su(Ste)

Su(Ste)20 CAACUGUGAGGGGAUCCUCAA

315 no match

21 UAGAUCUUCACCGUUGACUUGGCCCA

308

0 Su(Ste)

Su(Ste)22 UCUCAUCGUCGUAGAACAAGCCCGAGG

278

0 Su(Ste)

Su(Ste)23 UAGAUCUUCACCGUUGACUUGGCCC

276

0 Su(Ste)

Su(Ste)24 AUCCUCAACUGUGAGGGGAUCCUCAA

266 no match

25 UCUCAUCGUCGUAGAACAAGCCCAA

263

1 Su(Ste)

Su(Ste)26 UCUCAUCGUCGUAGAACAAGCCCCGA242

2 Su(Ste)

27 UCCGAACGUACCACGGUGCCCCAGU

237

0 transposonLow̲complexity

F-element

28 UCAUCUUCUUCUCGACGUUGACCA

227

0 transposon

LTR

ninja-Dsim-like

29 UUCUCAUCGUCGUAGAACAAGCCCG

204

0 Su(Ste)

30 CCUCAACUGUGAGGGGAUCCUCAA

197 no match

31 AUGUUUCAUCGUUAGACGGCUCGGGC

190

1 AT-chX

32 UAACAAGAUGCAUACGAUGUGGC

186

0 transposon

DNA

33 CGUUGACCAAUUUCCGAACAUACGC

185

0 transposon

LTR

34 UGUUUCAUCGUUAGACGGCUCGGCC

183

1 AT-chX

AT-chX-B

35 UCCUCAACUGUGAGGGAUCCUCAA

181 no match

36 UGUUUCAUCGUUAGACGGCUCGGGU

172

1 AT-chX

AT-chX-B

37 CCUCAUCGUCGUAGAACAAGCCCGA169

1 Su(Ste)38 UAAAUGCCAGAAUUUUAUUGGGGUUC

154

0 transposon

LINEbaggins

39 CAAGAUAUGACCAAAGCAAAGACAC

150

0 transposon

LINE

Cr1a

40 UGUUUCAUCGUUAGACGGCUCGG

134

0 AT-chX

AT-chX-B

41 UAGAUCUUCACCGUUGACUAGCCC

132

0 Su(Ste)

Su(Ste)42 UUUCUCAUCGUCGUAGAACAAGCCCGA

129

0 Su(Ste)

Su(Ste)43 UCUCAUCGUCGUAGAACAAGCCCGU

128

1 Su(Ste)

Su(Ste)44 UCCUCAACUGUGAGGGGAUCCUCAA

121 no match

45 UAGAUCUUCACCGUUGACUUGCCCCA

121

0 Su(Ste)

Su(Ste)46 AUCUCAUCGUCGUAGAACAAGCCCCGA

120 no match

47 AAAACCUGAAGAUGAUCCUGAGUCGC

119

0 transposon

LINE

Helena48 UGUGACUGAUCUAGAGUACAAUGU

118

0 transposon

LTR

DM88

49 AUCUCAUCGUCGUAGAACAAGCCCG

118

1 Su(Ste)50 UCUCAUCGUCGUAGAAGAAGCCCG

117

1 Su(Ste)

51 GCCCCGUACUCUGUGGUGACCAACA

117

0 transposon

52 GGAUCCUCAACUGUGAGGGGAUCCUCAA

116 no match

53 UAGAUCUUCACCGUUGACUUGGCC

109

0 Su(Ste)

Su(Ste)54 UCUCAUCAUCGUAGAACAAGCCCGAU

107

0 Su(Ste)

Su(Ste)55 UCGUCAUCGUCGUAGAACAAGCCCGGA

105 no match

56 UAGAUCUUCACCGUUGACUUGCCCC

102

0 Su(Ste)

57 UAAGUAAGCCCGAAGAUUGUCCAAU

102

0 transposon

58 UGUUUUCAUCGUUAGACGGCUCGGGC

102

2 no annotation

59 UCUCAUCGUCUUAGAACAAGCCCGA

102

1 Su(Ste)

Su(Ste)60 UUAUACCCAGGUGAUUACCACUAUU

101

0 Su(Ste)

Su(Ste)61 CUCUCAUCGUCGUAGAACAACGCCCGA

97 no match

62 CCUCAACUGUGAGGGAUCCUCAA

97 no match

63 UGUUUCAUCGUUAGACGGCUCGGGCG

91

0 AT-chX

64 UACAAUCUCCGAGCAAGACCCCGA90

0 transposon

65 UGUUUCAUCGUUAGACGACUCGGGC

88

1 AT-chX

AT-chX-B

66 UAGAUCUUCACCGUUGACUUGCCC

83

0 Su(Ste)

Su(Ste)67 UCUCAUCGUCGUAGAACGAGCCCGA80

1 Su(Ste)

Su(Ste)68 UUCAAGGUUACCCCAGGAUGCUGU

80

0 repeattrf

69 UCUCAUCGUCGUAGAACUAGCCCG

79

0 Su(Ste)

Su(Ste)70 UGUUUCAUCUUUAGACGGCUCGGGC

79

1 AT-chX

AT-chX-B

71 UUAAUGCCGGAAGCGAUCCCACUGC

77

0 AT-chX

AT-chX-B

72 UCUCAUCGUCGUAGAACAAUCCCGA77

1 Su(Ste)73 UGAUACCGAGAAUGACAAUGGUUGA

77

0 transposon

74 GACACAGAGGAGAGCAGAUGAGAGCA

76 no match

75 CUCAACUGUGAGGGAUCCUCAA

76 no match

76 UCUCAUCGUCGUAGAACAACGCCCGA

73 no match

77 CGCACACAGAGGAGAGCAGAUGAGAGCA

72 no match

78 UCGUCAUCGUCGUAGAACAAGCCCGA68

2 Su(Ste)79 UCUCAUCGUCGUAGAACAACCCCGA

68

1 Su(Ste)

80 CGUUGACCAAUUUCCGAACAUACGCC

68

0 transposon

81 UCUCAUCGUCGUAUAACAAGCCCGA66

1 Su(Ste)

Su(Ste)Su(Ste)AT-chX-B
1360
DM88

Su(Ste)Su(Ste)Su(Ste)LINEbaggins

Su(Ste)LTR

opus

AT-chX-B
LINE

Circe

Su(Ste)LTR

gypsy3

Su(Ste)Su(Ste)LTR

DM88
Su(Ste)82 UCUCAUCGUCGUAGAGCAAGCCCGA66

1 Su(Ste)

83 UACAAUCUCCGAGCAAGACCCCGAUC

66

0 transposon

LINE

Su(Ste)Circe

84 UCAUCUUCUUCUCGACGUUGACCAG

65

0 transposon

LTR

ninja-Dsim-like

85 UACUGACCCAGUCGGAUCUAUUGUA

65

0 transposon

LINEbaggins

86 UGGACUUUUUUCCGAUGAGCCAGU

64

0 transposon

LINE

G2

87 UCUCAUCAUCGUAGAACAAGCCCG

64

0 Su(Ste)

Su(Ste)88 GACUAGCUGGCCGAGGAUCCGAUU

63

0 Su(Ste)

Su(Ste)89 UCCGAGGAACCAAUUGAUCCAGCUG

62

0 Su(Ste)

Su(Ste)90 UCUCAUCGUCGUAGAACAGGCCCGA62

1 Su(Ste)91 UCCGAUCUCCUGAGUCGGACUCCGAG

61

0 transposon

92 UUAUACCCAGGUGAUUACCACUAU

60

0 Su(Ste)

93 CGUUGACCAAUUUCCGAACAUACG

60

0 transposon

LTR

DM88

94 UAAAGAAUCCUGACAAGAUCCCGGG

60

0 transposon

LTR

invader1

95 UCAAGGUAGUAACUAUGACGAUUUGA

60

0 transposon

LTR

flea

96 UCUCAUCGUCGUAGAACAAGCCCUAG

59

1 Su(Ste)

Su(Ste)97 UCUCAUCGUCGUAGGACAAGCCCGA58

1 Su(Ste)

Su(Ste)98 AAUGCCGGAAGCGAUCCCACUGCUU

58

1 coding gene

CG41580-RA¦CG41580

99 UCUCAUCGUCGUAGAACAAGCCCGG

58

1 Su(Ste)

100 CAAGAUAUGACCAAAGCAAAGACUA

57

1 transposon

101 UCUCAUCCUCGUAGAACAAGCCCGA56

1 Su(Ste)

Su(Ste)102 UGUUUCAUCGUUAGACGGCUCGGC

55

1 AT-chX

AT-chX-B

103 UCUCAUCGUCGUAGAACAAGCCC

55

0 Su(Ste)

Su(Ste)104 UCUCAUCGUCAUAGAACAAGCCCGA

53

1 Su(Ste)

Su(Ste)105 UUUCAUCGUCGUAGAACAAGCCCGA

53

0 no annotation

106 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAU

53 no match

107 CACACAGAGGAGAGCAGAUGAGAGCA

52 no match

108 CACACACAGAGGAGAGCAGAUGAGAGCA

52 no match

109 CAGCACACAGAGGAGAGCAGAUGAGAGA

52 no match

110 UCUCAUCGUCGUAGAACAAGCCCA

51

111 GCACACAGAGGAGAGCAGAUGAGAGCAA

51 no match

112 UCUCAUCGUCGCAGAACAAGCCCGA50

113 AACUGUGAGGGGAUCCUCAA

50 no match

114 UUUCUCAUCGUCGUAGAACAAGCCCG

49

115 GGCAACUGUGAGGGGAUCCUCAA

49 no match

116 AUGUUUUCAUCGUUAGACGGCUCGGGC

49 no match

117 UCUCAUCGUCGUAGAACAAGUCCGA

48

118 GAUCCAACUGUGAGGGGAUCCUCAA

48 no match

119 GCUGCCGAGAUAUGCUGCGAGUUGCCAA

48

0 transposon

120 UCUCAUCGUCGUAGAACAAGCCCUA

47

1 Su(Ste)

Su(Ste)121 GAUCCUCAACUGUGAGGGAUCCUCAA

47 no match

122 GACUAGCUGGCCGAGUAUUUGAUAU

47

0 Su(Ste)

Su(Ste)123 UCUCAUCGUCGUAGAACAAGCCCGUA

46

1 Su(Ste)

Su(Ste)124 UCUCGUCGUCGUAGAACAAGCCCGA

46

1 Su(Ste)

Su(Ste)125 CAGCACACAGAGGAGAGCAGAUGAGAGCCA

46 no match

126 UCGCAUCGUCGUAGAACAAGCCCGA

46

0 Su(Ste)

Su(Ste)127 UGUUUCAUCGUUAGACGGCUCGGGA

45

1 AT-chX

AT-chX-B

128 UUGGACCGAACACUUUGAACCAAGUA

45

0 Su(Ste)

Su(Ste)129 UAGAUCUUCACCGUUGACUAGCCCCAC

45

0 Su(Ste)

130 UGCCGAGGAGGACCCAGCAGCCAU

44

0 transposon

131 UCUCAUCGUCGUAGAACAAGCCGA

44

2 Su(Ste)

Su(Ste)132 CUGUGAGGGGAUCCUCAA

44

2 coding gene

CG13800-RA¦CG13800

133 UCUCAUCUUCGUAGAACAAGCCCG

44

1 Su(Ste)

Su(Ste)134 UCUCAUCGUUGUAGAACAAGCCCGA

43

1 Su(Ste)

Su(Ste)135 AUCCUCAACUGUGAGGGAUCUCAA

43 no match

136 AAUCUCAUCGUCGUAGAACAAGCCCGA43

2 Su(Ste)137 UAAAGAAUCCUGACAAGAUCCCGGGC

43

0 transposon

138 UGUUUCAUCGUUAGACGGCUCGGGCC

43

1 AT-chX

139 CCGAUCUCCUGAGUCGGACUCCGAGC

42

0 transposon

140 UGUUUCAUCGUUAGACGGCUCGGA

42

1 AT-chX

AT-chX-B

141 UCUCAUCGUCGUAGAACAAGCCCC

42

1 Su(Ste)

Su(Ste)142 GUAACUUCGGGAUAAGGAUUGGCUCU

42

0 ncRNA

143 GUCGCGAUCCCCAGUGAGUAUGUU

42

0 transposonLow̲complexity

F-element

144 GCCGAACGUAGUCUCUCGAGAGCGA

41

0 transposon

LTR

invader1

145 AAAACCUGAAGAUGAUCCUGAGUCGCA

41

0 transposon

LINE

Helena146 UAUGCUCUCGAAUGUAUGCCCGAUA

39

0 transposon

LINER1-element

147 UUCGGCUUUCUGACGAGAACUCGAGC

39

0 no annotation

148 UCCGAUCUCCUGAGUCGGACUCCGAGC

39

0 transposon

LINE

R1

149 UCCGAGGAACCAGUUGAUCCAGCUC

39

2 Su(Ste)

150 UAAAGAAUCCUGACAAGAUCCCGG

38

0 transposon

LTR

invader1

151 UUAUCGACUCGUGUACCUGGUUAAU

38

0 transposon

LTR

micropia

152 UCUCAUCUCGUAGAACAAGCCCGA

38 no match

153 UCUCAUCGUCGUAGAACAAGCCCGAAA

37

154 AUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

37 no match

155 UCUCAUCGUCGUAGGACAAGCCCG
156 UUAAUGCCGGAAGCGAUCCCACUG

Su(Ste)LINE

R1
Su(Ste)Su(Ste)DNA1360

1 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)0 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)Simple̲repeat

I

Su(Ste)LINE

Doc4

Su(Ste)LTR

invader1AT-chX-B

LINE

R1

rRNA

Su(Ste)1 Su(Ste)

Su(Ste)36

1 Su(Ste)

Su(Ste)36

0 AT-chX

157 UCUAGGCUGAGCGGAGAACCAGAGU

36

0 transposon

158 CUCAACUGUGAGGAUCCUCAA

36 no match

159 UUUUUCAUCGUUAGACGGCUCGGGC

36

1 AT-chX

160 UAACAAGAUGCAUACGAUGUGGCU

360 transposon

161 UCUCAUCGUCGUAGAACAGCCCGA

35 no match

162 GAUCCUCAACUGUGAGGGGAUCCUCAA

35 no match

163 UUAUAAGGAUGAUGAUACCGACUAAA

35

0 no annotation

164 AACUUCGGGAUAAGGAUUGGCUCU

35

0 ncRNA

AT-chX-B
Low̲complexity

F-element
AT-chX-B

DNA

1360

rRNA

165 UGUUUCAUCGUUAGACGGCUGGGGC

35

1 AT-chX

AT-chX-B

166 UCUCAUCGCCGUAGAACAAGCCCGA35

1 Su(Ste)

Su(Ste)167 CAGACACAGAGGAGAGCAGAUGAGAGCA

35 no match

168 GUAAUUGGGCCCGAACCCUUCUGGUG

35

1 transposon

169 CUCAUCGUCGUAGAACAAGCCCGA35

0 Su(Ste)

Su(Ste)170 GUAGAUCUUCACCGUUGACUUGGCC

350 Su(Ste)

Su(Ste)171 UUCUCAUCGUCGUAGAACUAGCCCGA34

0 Su(Ste)

172 CCGAACGUACCACGGUGCCCCAGUGA

34

0 transposon

173 AUCGUCAUCGUCGUAGAACAAGCCCGGA

34 no match

174 UGUUUUCAUCGUUAGACGGCUCGGG

34

2 no annotation

175 CCGAACGUACCACGGUGCCCCAGU

34

0 transposon

176 CAACACAGAGGAGAGCAGAUGAGAGCA

34 no match

177 UCUCAUCGUCGUAGAACAUGCCCGA33

1 Su(Ste)

Su(Ste)178 UGUUUCAUCGUUAGACGGCUAGGGC

33

1 AT-chX

AT-chX-B

179 AAGGUGGAAAUGAAGAAAGUACA

33 no match

180 AUUCUCAUCGUCGUAGAACAAGCCCG

33

1 Su(Ste)

Su(Ste)181 UCUGAUGACUCUUCGACAUAUACAUG

33

2 no annotation

182 UAGAUCUUCACCGUUUACUUGCCCC

32

1 Su(Ste)183 CAGCACACAGAGGAGAGCAGAUAGAGCA

32 no match

184 UCCGAUCUCCUGAGUCGGACUCCGAGCU

32

185 UUGACGGAGCUCACGUACCCCGUGG

32 no match

186 UCUCAUCGUCGUAGAACAAGCCCCG

32

2 Su(Ste)

Su(Ste)187 UACUCAUCGUCGUAGAACAAGCCCGA32

1 Su(Ste)

Su(Ste)188 UCUCAUCGUCGUAGAAAAAGCCCG

31

1 Su(Ste)

Su(Ste)189 UAGAUCUUCACCGUUGACUAGCCCA

31

1 Su(Ste)

Su(Ste)190 UCUCAUCGUCGUAGAACAAGCCUGA

31

1 Su(Ste)

191 UCCAACUGAAGGAGUACGAAUGAUC

31

0 transposon

192 CCCGAAGCGGACCAGCCCCAAUUAUU

30

0 coding gene

CG6446-RA¦Sema-1b

193 UGUUCCAUCGUUAGACGGCUCGGGC

30

1 AT-chX

AT-chX-B

194 CUCUCAUCGUCGUAGAACAAGCCCGA30

1 Su(Ste)

Su(Ste)195 UGUUUCAUCGUUAGACGGCUCGGGUU

29

2 AT-chX

AT-chX-B

196 UGUCUCAUCGUUAGACGGCUCGGGC

29

1 AT-chX

197 UGGACCUUUUCCCGAUGAGCCAGU

29

0 transposon

198 UCUGUUUCAUCGUUAGACGGCUCGGG

29

0 AT-chX

199 CAAGAUAUGACCAAAGCAAAGACACU

29

0 transposon

200 UGUUUCAUCGUUAUACGGCUCGGGC

29

1 AT-chX

201 UCCGAGGAACCAAUUGAUCCAGCUGC

29

0 Su(Ste)

202 UCCGAACGUACCACGGUGCCCCAG

28

0 transposon

203 CAGCACACAGAGGAGAACAGAUGAGAGCA

28 no match

204 UUAUAAGGAUGAUGAUACCGAUUAAA

28

0 no annotation

205 GACUAGCUGGCCGAGGAUCCGAUUU

28

0 Su(Ste)

Su(Ste)206 UAGAUCUUCACCGUUGACUAGCCCCCA

28

1 Su(Ste)

Su(Ste)207 CAGCCACAGAGGAGAGCAGAUGAGAGCA

28 no match

208 UCUCAUCGUCGUAGAACAGGCCCG

28

1 Su(Ste)

Su(Ste)209 CAGCACACAGAGGAGAGCAGAUGGAGCA

28 no match

210 AUCUCAUCGUCGUAGAACUAGCCCGA27

1 Su(Ste)

Su(Ste)211 UCUCAUCGUCGUGGAACAAGCCCGA27

1 Su(Ste)

Su(Ste)212 CAGCACACAGAGGAGACAGAUGAGAGCA

27 no match

213 UCUCAUCGUCGUAGAAUAAGCCCGA27

1 Su(Ste)

Su(Ste)214 UAGAUCUUCACCGUUGACUUGGCCCAC

27

0 Su(Ste)

Su(Ste)215 UCAUCGUCGUAGAACAAGCCCGA27

0 Su(Ste)

Su(Ste)216 UAGAUCUUCCCCGUUGACUUGGCC

271 Su(Ste)217 UAAAUGCCAGAAUUUUAUUGGGG

270 transposon

218 UCUCACCUCGUAGAACAAGCCCGA

26

2 no annotation

219 GUAUGACCCCUGGUACUGAAAUGCA

26

0 transposon

220 AUGUUUCAUCGUUAGACGGCUCGGG

26

1 AT-chX

221 UCCGAGGAACCAAUUGAUCCAGCU

26

0 Su(Ste)

222 CAAGAUAUGACCUAAGCAAAGACAC

26

1 transposon

223 UCUCACCGUCGUAGAACAAGCCCGA26

1 Su(Ste)

Su(Ste)224 GUGUUUCAUCGUUAGACGGCUCGGGC

26

1 AT-chX

AT-chX-B

225 UUCUCGCUGAGAGCUGAGAGCCCGCAU

25

1 ncRNA

alphagamma-element

226 UCUCAUCGUCGUAGAACAAGCCCGAC

25

1 Su(Ste)227 UACAAUCUCCGAGCAAGACCCCGAU

25

0 transposon

228 UGCUUCAUCGUUAGACGGCUCGGGC

25

1 AT-chX

AT-chX-B

229 CGAAAUGUUUCAUCGUUAGACGGCCUCGGGC

25 no match

230 GGAUCAACUGUGAGGGGAUCCUCAA

25 no match

231 UCUGUUUCAUCGUUAGACGGCUCGGGC

25

0 AT-chX

AT-chX-B

232 UCUCAUUGUCGUAGAACAAGCCCGA24

1 Su(Ste)

Su(Ste)233 CGUUUCAUCGUUAGACGGCUCGGGC

24

1 AT-chX

234 UAACAAGAUGCAUACGAUGUGGCUC

24

0 transposon

DNA

235 AAAACCUGAAGAUGAUCCUGAGUC

24

0 transposon

LINE

Helena236 UGGUUUCAUCGUUAGACGGCUCGGGCCG

24

2 no annotation

237 UGCAUUCGCGUCGAGGCCCAGUAUA

24

2 transposon

LINER1-element

238 AAAACCUGAAGAUGAUCCUGAGUCG

24

0 transposon

LINE

Helena239 UUAAUACCUCGAGUACGUCUGCUCU

23

0 transposon

LTR

Max

240 UGUGAGGGGAUCCUCAA

23

2 coding gene

241 GCCGAACGUAGUCUCUCGAGAGCGAG

23

0 transposon

LTR

invader1

242 UAAGACCCAAUCUAUGUGCUUAACA

23

0 transposon

LTR

gtwin

243 AUCCUCAACUGGUGAGGGAUCCUCAA

23 no match

244 CCGAACGUACCACGGUGCCCCAGUG

23

0 transposonLow̲complexity

F-element

245 UCUCAUCGUCGUAGAACAAGCC

23

0 Su(Ste)

246 CCUAACGAGGUAGAUGACUCCUGGAA

23

0 transposon

247 UGUUUCAUCGUUAGACGUCUCGGGC

22

1 AT-chX

0 transposon

LINEbaggins

Su(Ste)Low̲complexity

F-elementLow̲complexity

F-element

Su(Ste)LINE

R1

Su(Ste)LINE

R1-element

AT-chX-B
LINE

G
AT-chX-B

LINE

Cr1a
AT-chX-B
Su(Ste)Low̲complexity

F-element

Su(Ste)LINEbagginsDNA

Bari1
AT-chX-B
Su(Ste)

LINE

Cr1a

Su(Ste)
LINE

Circe

AT-chX-B
1360

CG13800-RA¦CG13800

Su(Ste)LINE

Cr1aAT-chX-B

248 AAAGGUGGAAAUGAAGAAAGUACA

22 no match

249 UAUGCUCUCGAAUGUAUGCCCGAUAU

22

0 transposon

250 UCUCAUCGUCGUAGAACAAGCUCG

22

1 Su(Ste)

251 UAUGCAAUAUUUGUUGCGCCCCGG

22

0 transposon

252 UUGGACCGAACACUUUGAACCAAG

22

0 Su(Ste)

253 UGUUUCAUCGUUAGACGACUCGGG

22

1 AT-chX

254 UAAAUGCCAGAAUUUUAUUGGGGU

220 transposon

LINEbaggins

255 UCAAAUCCGAGAUACUCUAUUUUUG

22

0 transposon

LTR

invader2

256 CAAGAUAUGACCAAAGCAAAGACA

22

0 transposon

LINE

Cr1a

257 UCUCAUCGUCGUAGAACAAGCCCGGA

22

1 Su(Ste)

Su(Ste)258 UUCCGAGGAACCAAUUGAUCCAGCUG

22

0 Su(Ste)

Su(Ste)259 UUCUUUGAAGAUGGCCCACAUAAAGA

21

0 repeattrf

260 UGUUUCAUCUUUAGACGGCUCGGG

21

1 AT-chX

AT-chX-B

261 GUCUCAUCGUCGUAGAACAAGCCCGA21

1 Su(Ste)

Su(Ste)262 UCUCAUCGUCGUAGAACAAAGCCCGA

21 no match

263 UUCUCAUCAUCGUAGAACAAGCCCGA21

0 Su(Ste)

Su(Ste)264 UCUCAUCGUCGUAGAACAAGCUCGA21

1 Su(Ste)

Su(Ste)265 CGUAACUUCGGGAUAAGGAUUGGCUCU

20

0 ncRNArRNA

266 CAGGCACACAGAGGAGAGCGAGAUGAGAGCA

20 no match

267 CAGCACAGAGGAGAGCAGAUGAGAGCA

20 no match

268 GUAUGACCCCUGGUACUGAAAUGCAG

20

0 transposon

269 CCUCAUCGUCGUAGAACAAGCCCG

20

1 Su(Ste)

Su(Ste)270 CAUGGAUUGGCUUGUUUUGUUCA

20 no match

271 ACUCAACUGUGAGGGGAUCCUCAA

20 no match

272 UCCAAAGAGUCGUGUUGCUUGAUAGU

20

0 ncRNArRNA

273 UCAACUGUGAGGGAUCCUCAA

20 no match

274 UGUUUCAUCGUUAGACGGCUUGGGC

191 AT-chX

AT-chX-B

275 UUAAUGCCGGAAGCGAUCCCACUGCU

19

0 coding gene

CG41580-RA¦CG41580

276 UCUCAUCGUCGUAGACAAGCCCGA

19 no match

277 UAAGAUCAACGAGAGAUGGCCAU

19

278 CGAAAUCUCAUCGUCGUAGAACAAGCCCGA

19 no match

279 UCUGCCCGAUGAGAAGAAUGGCCCGU

19280 CGAAAUGUUUCAUCGUUAGACGGCUCGGGC

19 no match

281 GCCGUCGAGAGAUAUCGGAAGAGUU

190 ncRNArRNA

282 UUCAAGGUUACCCCAGGAUGCUGUGC

190 repeattrf

283 AUGUUUCAUCGUUAGACGGCUCGGGCC

19

2 AT-chX

AT-chX-B

284 UCUCAUCGUCGUAGAAGAAGCCCGAG

19

1 Su(Ste)

Su(Ste)285 UCUCAUCGUCGUAGAACAAGCCCGAU

19

1 Su(Ste)

286 UAACAAGAUGCAUACGAUGUGGCUCC

19

0 transposon

DNA

287 UCCAAAGGACUCGAAAAACUCUUGA

19

2 transposon

LINE

288 UGUUUCAUCGUUAGACGUCUCGGG

19

1 AT-chX

289 UCGGCUUUCUGACGAGAACUCGAG

19

0 no annotation

290 GUAGAUCUUCACCGUUGACUUGGCCC

190 Su(Ste)

291 CAAGUUCUCGGCUGAUCAGUACCCA

18

0 transposon

LTR

Quasimodo

292 AAUCCUCAACUGUGAGGGAUCCUCAA

18 no match

293 UUAAUACCUCGAGUACGUCUGCUC

18

0 transposon

LTR

Max

294 UUUUAAACAAUUGAAAGAUAAGACCCA

18

0 transposon

LINE

Cr1a

295 UGUUUCAUCGUUAGAUGGCUCGGGC

18

1 AT-chX

296 UCUCAUCGUCGUAGAACAAGCCCCA

18

1 Su(Ste)

297 GAUUGCCAUUCUCUGCGUAAGCGAC

18

0 transposon

298 UCUCAUCGUCGUAGAUCAAGCCCGA18

1 Su(Ste)299 UCUCAUCGUCGUAGAACAAGCCAGA

18

1 Su(Ste)

300 UUUUAAACAAUUGAAAGAUAAGACCC

18

0 transposon

301 GUUUCAUCGUUAGACGGCUCGGGC

17

0 AT-chX

302 GCUGGCCGAGUAUUUGAUAUUCUU

17

0 Su(Ste)

303 AAAAACCUGAAGAUGAUCCUGAGUCGC

17

1 transposon

304 ACCACCCUGAUGUGCUUGACGUU

17 no match

305 AGAUCUUCACCGUUGACUAGCCCCA

17

0 Su(Ste)

306 CUGUGAGGGAUCCUCAA

17

2 transposon

307 GACUAGCUGGCCGAGUAUUUGAUA

17

0 Su(Ste)308 UUCAUCGUCGUAGAACAAGCCCGA

17

0 no annotation

309 UGCUCUCGAAUGUAUGCCCGAUAU

17

0 transposon

LINER1-element

310 UAAGAUUGGACCCAGUACACUGCCU

17

0 transposon

LINE

Doc

311 UACUGAGUCGUUUACCGAGGGCCGA

17

0 transposon

LTR

G4

312 CGUAACUUCGGGAUAAGGAUUGGCU

170 ncRNA

313 CGGGAUGAGCGGAAUGGCCGAACA

17

0 coding gene

314 UAAAUGCCAGAAUUUUAUUGGGGUU

160 transposon

315 GAUCUUCACCGUUGACUAGCCCCA

16

0 Su(Ste)

Su(Ste)316 CCGAGGAACCAAUUGAUCCAGCUGC

16

0 Su(Ste)

Su(Ste)317 UUAUACCCAGGUGAUUACCACCUA

16

2 Su(Ste)

318 CCCUGAUGAAGAAGAGAUGCCCAGUGA

16

0 transposon

319 ACUGUGAGGGGAUCCUCAA

16 no match

320 CAGCACACAGAGGAGAGCAGAUGAGACA

16 no match

321 UUCUUUGAAGAUGGCCCACAUAAAG

16

0 repeattrf

322 UGUUUCAUCGCUAGACGGCUCGGGC

16

1 AT-chX

AT-chX-B

323 AUCUCAACUGUGAGGGGAUCCUCAA

16 no match

324 UCUCAUCGUCCUAGAACAAGCCCGA

16

1 Su(Ste)

325 CGUUGACCAAUUUCCGAACAUAC

16

0 transposon

326 AAAAUCUCAUCGUCGUAGAACAAGCCCGA

16 no match

327 UGUUUCAUCGUUAGACGGCUCGGGCA

16

1 AT-chX

AT-chX-B

328 UUUUCAUCGUUAGACGGCUCGGGC

16

1 AT-chX

AT-chX-B

329 CAGCACACAGAGGAGAGCAGAUGAGAGC

16 no match

330 GCCCCGUACUCUGUGGUGACCAA

16

LINE

R1-element
Su(Ste)LTR

opus
Su(Ste)AT-chX-B

DNA

Bari1

0 transposon

LTR

opus

0 transposon

LINE

RR49783

0 transposon

Su(Ste)1360
G2AT-chX-B
Su(Ste)AT-chX-B
Su(Ste)Low̲complexity

F-element
Su(Ste)Su(Ste)LINE

Cr1aAT-chX-B
Su(Ste)LINE

HelenaSu(Ste)LTR

springer
Su(Ste)rRNA
CG33555-RC¦btsz
LINE

baggins

Su(Ste)LTRninja-Dsim-like

Su(Ste)
LTR

LINE

DM88

baggins

331 UAGAUCUUCACCGUUGACUAGCCCCC

16

1 Su(Ste)

332 CAAGAUAUGACCAAAGCAAAGACACUA

16

0 transposon

333 UGUCAUCGUCGUAGAACAAGCCCGA

16

1 Su(Ste)334 GAUCUCCUGAGUCGGACUCCGAGC

16

0 transposon

LINE

R1

335 AAACCUGAAGAUGAUCCUGAGUCGC

16

0 transposon

LINE

Helena336 UUGAUACGAAUGAGACCCGCAGUAA

16

0 repeattrf

337 UAGAUCUUCACCGUUGACUAGCCCAA

16

1 Su(Ste)

Su(Ste)338 AUCUCAUCGUCGUAGAAGAAGCCCGA15

2 Su(Ste)339 UCCGAACGUACCACGGUGCCCCAGUG

15

0 transposon

340 UCGCAUCGUCGUAGAACAAGCCCG

15

0 Su(Ste)

Su(Ste)341 CUCUCAUCGUCGUAGAACAACGCCCG

15 no match

342 AGAAGCACCGUUUCCCGUCCGAUCAA

15 no match

343 UAGCUGGCCGAGUAUUUGAUAUUCUU

15

0 Su(Ste)

Su(Ste)344 UCUUUCAUCGUUAGACGGCUCGGGC

15

1 AT-chX

AT-chX-B

345 UCUCAUCGUUAGACGGCUCGGG

15

1 AT-chX

AT-chX-B

346 UUCGCAUCGUCGUAGAACAAGCCCGA

15

0 Su(Ste)

Su(Ste)347 UGUUUCAUCUUAGACGGCUCGGGC

15 no match

348 CUGUUUCAUCGUUAGACGGCUCGGG

15

0 AT-chX

AT-chX-B

349 CAGCACACAGAGGAUAGCAGAUGAGAGCA

15 no match

350 UCUCAUCGUCGUGAACAAGCCCGA

15 no match

351 UGUUUCAUUGUUAGACGGCUCGGGC

15

1 AT-chX

AT-chX-B

352 UCUCAUCGUCGUAGAAGAAGCCCCGA

15 no match

353 UAGAAGAACAUUGAAGCGCUUGAC

15

0 Su(Ste)

Su(Ste)354 UGUUCAUCGUUAGACGGCUCGGGC

152 AT-chX

AT-chX-B

355 AUCAACUGUGAGGGGAUCCUCAA

14 no match

356 AAUCCUCAACUGUGAGGGGAUCCUCAA

14 no match

357 UAGAUCUUCACCGUUGACUAGCCCCU

14

1 Su(Ste)

Su(Ste)358 UUAAUGCCGGAAGCGAUCCCACU

14

0 AT-chX

359 UGGACUUUUUUCCGAUGAGCCAGUG

14

0 transposon

LINE

G2

360 GCACGGACCUGGAGAACAACCAGA

14

0 transposon

LTR

ninja-Dsim-like

361 UUGGACCGAACACUUUGAACCAAGUAU

14

0 Su(Ste)

Su(Ste)362 GUAGAUCUUCACCGUUGACUUGCCC

140 Su(Ste)

Su(Ste)363 UCUGACGAGAACUCGAGCCGCGUA

14

0 no annotation

364 UGUUUCAUCGUUAGACGGCUCGGGUC

14

2 AT-chX

365 AUCUCAUCGUCGUAGAACAAGCCCCG

14 no match

366 CUCAUCGUCGUAGAACAAGCCCGAGG

14

0 Su(Ste)367 UCCUGUUGAUGUGAGGGCCCCAAGU

14

0 transposon

LINE

368 AGCACACAGAGGAGAGCAGAUGAGAGCA

14 no match

369 UAACAAGAUGCAUACGAUGUGGCUCCA

14

0 transposon

DNA

370 UUGGACCGAACACUUUGAACCAAGU

14

0 Su(Ste)371 UCUCAUCGUCGUAGAACUAGCCCGAG

14

0 Su(Ste)372 UACUGUUUGUAGGUGUACUGACCC

14

0 transposon

373 UGUUUCAUCGUUAGACUGCUCGGGC

14

1 AT-chX

374 UCUCAUCGUCGUAGAACAAACCCGA

13

1 Su(Ste)

375 CAAAGAAGAUGCUGAGGUGCUCGAG

13

0 transposon

376 UGUUCAUCGUUAGACGGCUCGGG

13

2 AT-chX

377 UGUGACUGAUCUAGAGUACAAUGUU

13

0 transposon

LTR

DM88

378 UAAGAUUGGACCCAGUACACUGCC

13

0 transposon

LINE

Doc

379 AUCUCAUCGUCGUAGAACAAAGCCCGA

13 no match

380 UUCUGACGAGAACUCGAGCCGCGUAG

13

0 no annotation

381 UUCUUGACAACCCGAUCGGACCUC

13

0 transposon

LTR

invader4

382 UCUCAUUCGUAGAACAAGCCCGA

13 no match

383 GAAAGCACCGUUUCCCGUCCGAUCAA

13 no match

384 UCUCAUCAUCGUAGAACAAGCCCGAUA

13

1 Su(Ste)

Su(Ste)385 UGUUUCAUCGUUAGGCGGCUCGGGC

13

1 AT-chX

AT-chX-B

386 CCUCAACUGUGAGGAUCCUCAA

13 no match

387 UUCUCAUCGUCGUAGAAGAAGCCCGA

13

1 Su(Ste)

Su(Ste)388 UGAAGCUGAAAUUGUUUAGUUUGAU

13

0 no annotation

389 GUGAGGGGAUCCUCAA

13

2 transposon

390 UAGAUCUUCACCGUUGACUUGCCCCGC

130 Su(Ste)

Su(Ste)391 UUCUCAUCGUCGUAGAACUAGCCCG

130 Su(Ste)

Su(Ste)392 UCUCAUCGUCGUAGAACAACGCCCG

13 no match

393 AGAUCUUCACCGUUGACUUGGCCCAC

13

0 Su(Ste)

Su(Ste)394 CAGCAACAGAGGAGAGCAGAUGAGAGCA

13 no match

395 GGACUAGCUGGCCGAGUAUUUGAU

13

0 Su(Ste)

Su(Ste)396 UCUGUUUCAUCGUUAGACGGCUCGG

13

0 AT-chX

AT-chX-B

397 GUAGAUCUUCACCGUUGACUAGCCCCA

13

0 Su(Ste)

Su(Ste)398 AACUUCGGGAUAAGGAUUGGCUCUG

130 ncRNA

399 UAACGACCAGACAUACGGCAUUAUC

12

1 transposon

400 GUUUCAUCGUUAGACGGCUCGGG

12

0 AT-chX

401 UCUCAUCUUCGUAGAACUAGCCCGA

12

1 Su(Ste)

402 UCAAUGUUGAUCGAAGAAACGAAUU

12

0 transposon

403 UCUCAUCGUCGUAGAAGAAGCCCAA

12

2 Su(Ste)

Su(Ste)404 UGUUACAUCGUUAGACGGCUCGGGC

121 AT-chX

AT-chX-B

405 ACUGCAUAUCGAGAGGUCCUCGGUU

122 ncRNAtRNA

406 AUCGUCUCGGGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGGC

12 no match

407 UCUCAUCGUCGUAGCACAAGCCCGA

12

1 Su(Ste)

Su(Ste)408 AAAGCACCGUUUCCCGUCCGAUCAA

12 no match

409 GCUUCAUCCAAGCGAACUGUGCCCGA12410 AAAAGGUGGAAAUGAAGAAAGUACA

12 no match

411 UAUCCAAUCCGACGCAACCGAAAACA

12 no match

412 UGUUUCAUCGUUAGACGGUUCGGGC

121 AT-chX

413 CAACUGUGAGGAUCCUCAA

12

2 no annotation

0 transposon

Su(Ste)LINE

Cr1a
Su(Ste)Su(Ste)Low̲complexity

F-element

AT-chX-B

AT-chX-B
Su(Ste)G2
1360
Su(Ste)Su(Ste)LINEbaggins
AT-chX-B
Su(Ste)LTR

Dm88
AT-chX-B

LINE

bagginsrRNA
LINE

R1-element
AT-chX-B
Su(Ste)

LINE

LINE

G

R1-element

AT-chX-B

414 GUAGAUCUUCACCGUUGACUAGCCC

120 Su(Ste)

Su(Ste)415 UCUCAUCGUCGUUGAACAAGCCCGA

12

1 Su(Ste)

Su(Ste)416 AACCGAUAUGGUUGGACCACAAUCUUU

120 ncRNA

7SLRNA-RA

417 UGUUUCAUCGUUAGACGGCUCGGGCU

121 AT-chX

AT-chX-B

418 UGUUUCGUCGUUAGACGGCUCGGGC

121 AT-chX

AT-chX-B

419 GGACAACUGUGAGGGGAUCCUCAA

12 no match

420 AUAGAUCUUCACCGUUGACUAGCCCCA

12

1 Su(Ste)

Su(Ste)421 UCUUAUCGUCGUAGAACAAGCCCGA

12

1 Su(Ste)

422 GCCCCGUACUCUGUGGUGACCAACAC

12

0 transposon

423 AUAGAUCUUCACCGUUGACUAGCCCCCA

11

2 Su(Ste)

Su(Ste)424 UGUUUCAUCGUCAGACGGCUCGGGC

11

1 AT-chX

AT-chX-B

425 GGAUCCUCAACUGUGAGGGAUCCUCAA

11 no match

426 UCCGAACGUAUCACGGUGCCCCAGU

11

0 transposon

LINE

F

427 AAAAACCUGAAGAUGAUCCUGAGUC

11

1 transposon

LINE

Helena428 UUUUCAUCGUUAGACGGCUCGGG

11

1 AT-chX

AT-chX-B

429 UCUCAUCGUCGUAGAACAAGCCG

11

1 Su(Ste)

Su(Ste)430 UAAGAAGAUGUCCGGACAGCUGG

11

0 Su(Ste)

Su(Ste)431 AUCUCAUCGUCGUAGAACAAGCCCGAA

11

1 Su(Ste)

432 AAACCUGAAGAUGAUCCUGAGUCGCA

11

0 transposon

433 AUUCUCAUCGUCGUAGAACAAGCCCGA

11

1 Su(Ste)

Su(Ste)434 CGUCUCGGGUAAGGAUCCUCAA

11 no match

435 UGUUUCAUCGUUAGACGACUCGGGCG

11

1 AT-chX

AT-chX-B

436 UCUCAUCGUCUUAGAACAAGCCCG

11

1 Su(Ste)437 UAAGAUUGGACCCAGUACACUGCCUU

11

0 transposon

438 UUAUACCCAGGUGAUUACCACUAUUAA

11

0 Su(Ste)

Su(Ste)439 UCUCAUCGUCGUAGAACUAGCCCUA

11

1 Su(Ste)

Su(Ste)440 UAGAUCUUCACCGUUGACUACGCCCCA

11 no match

441 UCUCAUCGUCGUAGAAUAAGCCCG

11

1 Su(Ste)442 UACAAUGAUCUGAUCGGGUUUUUCU

11

0 transposon

LINE

Cr1a

443 UAAAUGCCAGAAUUUUAUUGGGUUC

11

1 transposon

LINEbaggins

444 UCCGGGAGAAAACAAUGAUGGCCAA

11

0 coding gene

CG12717-RA¦CG12717

445 AUGUUUUCAUCGUUAGACGGCUCGGG

11 no match

446 CAGCACGACAGAAGGAGAGCAGAUGAGAGCCA

11 no match

447 UGUUUCAUCGUUAGACGGCUCGGGAA

11

2 AT-chX

AT-chX-B

448 UCACAUCGUCGUAGAACAAGCCCGA

11

1 Su(Ste)

Su(Ste)449 UUCAAGGUUACCCCAGGAUGCUGUG

110 repeat

450 UGUACUGUUUGUAGGUGUACUGACCCA

11

0 transposon

451 UCUCAUAGUCGUAGAACAAGCCCGA

11

1 Su(Ste)

452 ACUGUGAGGAUCCUCAA

11

1 no annotation

453 UCCAAAGAAUGAUGACCCUUGCAUU

11

0 transposon

454 UCUCAUCGUCGUAGUACAAGCCCGA

11

1 Su(Ste)

455 UUCUGACGAGAACUCGAGCCGCGUA

11

0 no annotation

456 AUCGUCUCGGGAGUGAAAUACUCUAUCGUCGUAGAACAAGCCCGA

11 no match

457 UCCUGUUGAUGUGAGGGCCCCAAGUC

11

0 transposon

458 UCUCAUCGUCGUAGAACAAGC

110 Su(Ste)459 UGUUACUGAUCUAGAGUACAAUGU

11

1 transposon

460 ACUUCGGGAUAAGGAUUGGCUCUG

100 ncRNArRNA

461 UGUUUCAUCGUUAGACGGCUCGUGC

10

1 AT-chX

AT-chX-B

462 UGUUUCAUCGUUAGACGGCACGGGC

101 AT-chX

AT-chX-B

463 GGAUCCUCAACUGUGAGGCUCAA

10 no match

464 AACUGUGAGGAUCCUCAA

10465 AUCCUCAACUGUGAGGAUCCUCAA

10 no match

466 UGUUUCAUCGUUGACGGCUCGGGC

10 no match

467 UCAACUGUGAGGGAUCUCAA

10 no match

468 CAACUGUGAGGGAUCCUCAA

10 no match

469 AAACUGUGAGGGGAUCCUCAA

10 no match

470 UCCAACUGAAGGAGUACGAAUGAUCG

10

0 transposon

471 UUAUACCCAGGUGAUUACCACUAUUA

10

0 Su(Ste)472 UACUGUUUGUAGGUGUACUGACCCA

10

0 transposon

473 GACGAGGUGGCCGAGUGGUUAAGG

100 ncRNAtRNA

474 UUCCUCGGGAUCAAGGGCAACGAGU

100 coding gene

CG40635-RA¦CG40635

475 GACUAGCUGGCCGAGUAUUUGAU

10

0 Su(Ste)

Su(Ste)476 UUCAAGGUUACCCCAGGAUGCAGU

10

1 repeat

477 AAAAACCUGAAGAUGAUCCUGAGUCGCA

10

1 transposon

478 UGUUUCAUCGUUAGACGGCCCGGGC

101 AT-chX

479 UAAACAAGAUGCAUACGAUGUGGC

102 transposon

DNA

480 GAUCCUCAGCUGUGAGGGGAUCCUCAA

10 no match

481 UCAACUGUGAGGGGAUCUCAA

10 no match

482 UCUCAUCGUCGUAGAAACAAGCCCGA

10 no match

483 GCCCCGUACUCUGUGGUGACCAAC

10

0 transposon

LINE

484 UCUCAUCGUCUAGAACAAGCCCGA

10 no match

485 AUCGUCUCGGGGAUGAAAAUCUCAUCGUCGUAGAACAAGCCCGA

10 no match

486 AUCGUCAUCGUCGUAGAACAAGCCCGA

10 no match

487 CCACACAGAGGAGAGCAGAUGAGAGCA

10 no match

488 UGUUUCAUCGUUAGACGGCUCUGG

10

1 AT-chX

489 UCUGACGAGAACUCGAGCCACGUAGCC

10

1 no annotation

490 UGUUUCAUCGUUAGACGGCUCCGGC

101 AT-chX

491 UCUCAUCGUCGUAGAAAGCCCGA

10 no match

492 UGAAUACCUCGGGUACGUCUGCUC

100 transposon

LTR

GATE

493 UGGACUUUUUUCCGAUGAGCCAGUGA

10

0 transposon

LINE

G2

494 UGUUUCAUCGUUAGACUGCUCGGG

10

1 AT-chX

AT-chX-B

495 UGUUUCAUCGUUAGACAGCUCGGGC

101 AT-chX

AT-chX-B

496 UACUCAUCGUCGUAGAACAAGCCCG

101 Su(Ste)

Su(Ste)Su(Ste)LINEbaggins

Su(Ste)LINE

HelenaSu(Ste)LINE

Doc

Su(Ste)trf
LINEbaggins
Su(Ste)LINE

RR49783
Su(Ste)LINE

G2
Su(Ste)LTR

DM88

1 no annotationLINE

R1-element
Su(Ste)LINEbagginstrf
LINE

HelenaAT-chX-B
1360

baggins

AT-chX-B
AT-chX-B

497 UCUCAUCGUCGUAGAACAAGCCCGC

101 Su(Ste)498 UUUCUCAUCAUCGUAGAACAAGCCCGA

100 Su(Ste)499 UCUAGGCUGAGCGGAGAACCAGAGUA

10

1 transposon

500 UAGCAUCGUCGUAGAACAAGCCCGA

9

1 Su(Ste)

501 UCAACUGUGAGGAUCCUCAA

9 no match

502 UUCUGCCCGAUGAGAAGAAUGGCCC

90 transposon

503 UCUCAUCGUCGUAGAACCAGCCCGA

9

1 Su(Ste)504 UGUUUCAUCGUCGUAGAACAAGCCCGA

9

1 no annotation

505 CCAACUGUGAGGGGAUCCUCAA

9 no match

506 GAUCUCCUGAGUCGGACUCCGAGCU

9507 CUCUCAUCGUCGUAGAACAACGCCCGUA

9 no match

508 UGUUUCAUCGUUAGACGGCUCG

9

0 AT-chX

AT-chX-B

509 UCGUCAUCGUCGUAGAACAAGCCCG

92 Su(Ste)

Su(Ste)510 UCUCAUCGUCGAAGAACAAGCCCGA

9

1 Su(Ste)

511 AAACCUGAAGAUGAUCCUGAGUC

90 transposon

512 CAGCACACAGAGGAGAGCAGAUGAGA

9 no match

513 AGAGUGAGGGGAUCCUCAA

9

2 no annotation

514 GACUAGCUGGCCGAGUAUUUGAUAUUC

90 Su(Ste)

Su(Ste)515 UGUUUCAUCGUUGGACGGCUCGGGC

91 AT-chX

AT-chX-B

516 GAUCUUCACCGUUGACUUGGCCCA

90 Su(Ste)

517 UAAAAUGCCAGAAUUUUAUUGGGGUUC

92 transposon

518 GGCUCAACUGUGAGGGGAUCCUCAA

9 no match

519 UAGAUCUUCACCGUUGACUUGCC

90 Su(Ste)520 CCGAUCUCCUGAGUCGGACUCCGAG

9

0 transposon

LINE

R1

521 UUUAUACCUGAGCCAGUUUGUUUUG

90 transposonLow̲complexity

F-element

522 UCUCAUCGACGUAGAACAAGCCCGA

9

1 Su(Ste)

Su(Ste)523 CAGAUCUUCACCGUUGACUAGCCCC

91 Su(Ste)

Su(Ste)524 CACAGAGGAGAGCAGAUGAGAGCA

9 no match

525 UUCUCAUCGUCGUAGAAGAAGCCCG

91 Su(Ste)

Su(Ste)526 UUCCUCGGGAUCAAGGGCAACGAGUU

90 coding gene

CG40635-RA¦CG40635

527 UUCUCAUCGUCGUAGAACAAGCCCAA

9

1 Su(Ste)

Su(Ste)528 UUUCUCAUCGUUAGACGGCUCGGGC

92 AT-chX

AT-chX-B

529 UCUCGAUCGUCGUAGAACAAGCCCGACG

9 no match

530 CAGAUACCCGUUACUCAGCUAGUGC

90 transposon

531 UAUAAGGAUGAUGAUACCGACUAA

90 no annotation

532 UUCGGCUUUCUGACGAGAACUCGAG

9

0 no annotation

533 UCUCAUCGUGUAGAACAAGCCCGA

9 no match

534 UUCACUCGUUCACAGAAAUAUGACUU

90 Su(Ste)

535 UCCGGGAGACACCAAUGCUGGCCAAGU

90 coding gene

536 CUUUAAACAAUUGAAAGAUAAGACCCA

9

1 transposon

537 AUCUCAUCUUCGUAGAACAAGCCCGA92 Su(Ste)

Su(Ste)538 AACCGAUAUGGUUGGACCACAAUCUU

90 ncRNA

7SLRNA-RA

539 UCUCAUCGUCGUAGAACAAGGCCCGA

9 no match

540 UCUCAUCGCCGUAGAACAAGCCCG

91 Su(Ste)

Su(Ste)541 UCUCAUCGUUAGACGGCUCGGGC

91 AT-chX

542 UACUGACCCAGUCGGAUCUAUUGUAC

90 transposon

543 UAACUUCGGGAUAAGGAUUGGCUCU

80 ncRNA

544 CACCGUGGAGACGGCUUUAGGACCUG

8

0 transposon

LTR

aurora545 GCCCCGUACUCUGUGGUGAUCAACA

8

1 transposon

LINEbaggins

546 CACGCGGGAGACCGGGGUUCAAUUC

80 ncRNAtRNA

547 AUCGUCUCGGGGAUGAAAAUGUUUCAUCGUUAGACGGCUCGGGC

8 no match

548 UCUCAUCGUCGAAGUACAAGCCCGA82 Su(Ste)

Su(Ste)549 UCAACUGUGAGGGGGAUCCUCAA

8 no match

550 UUCUUUGAAGAUGGCCCACAUAAAGAG

8

0 repeattrf

551 UUCCGAGGAACCAAUUGAUCCAGCU

80 Su(Ste)552 GUGAUGUCAACGUUUGAUCCCCUG

8

0 transposon

553 UUCUCAUCGUCGUAGAACUAGCCCAA

8

1 Su(Ste)554 CAGCUGUGAGGGGAUCCUCAA

8

2 no annotation

555 AAAAUGUUUCAUCGUUAGACGGCUCGGGC

8 no match

556 AUCUCAUCAUCGUAGAACAAGCCCGA8

1 Su(Ste)557 ACUGACCCAGUCGGAUCUAUUGUAC

8

0 transposon

558 CAGCACACAGAGGAAAGCAGAUGAGAGCA

8 no match

559 UCAUCGUCGUAGAACAAGCCCG

80 Su(Ste)

Su(Ste)560 CCCAAGUACAAGCCCGGCGAAAGACC

8

0 repeattrf

561 UGAGUGCUUGAUAUGACCAGCUUGGACC

80 Su(Ste)

Su(Ste)562 CAGCACGCAGAGGAGAGCAGAUGAGAGCA

8 no match

563 UGGACGGAGCGAUGUUCGGGCCCAG

8

0 repeattrf

564 CAUCUCGCUUGAAAUGAUGAUGAC

8

0 no annotation

565 AAGCACCGUUUCCCGUCCGAUCAA

8 no match

566 UCUCAUCGUCGUAGAAGUAGCCCGA

8567 CCCAACUGUGAGGGGAUCCUCAA

8 no match

568 UGUUUUCAUCGUUUAGACGGCUCGGGC

8 no match

569 UAAAUGCCAGAACUUUAUUGGGGU

80 transposon

LINEbaggins

570 CCCGUGUGUCAUUAAGGUCUUGAACC

8

0 transposon

LINEbaggins

571 UCUCAUCGUCGUAGAACAGCCCG

8 no match

572 UAGAUCUUCACCGUUGACUUGCCCCC

80 Su(Ste)

Su(Ste)573 UCGAUCUGGGCACCACCUACUCCUG

8

0 coding gene

CG18743-RA¦Hsp70Ab

574 ACUUCGGGAUAAGGAUUGGCUCU

80 ncRNArRNA

575 UGGUUCAUCGUUAGACGGCUCGGG

8

1 AT-chX

AT-chX-B

576 UCUCAUCGUCGUAGAAGAACGCCCGA

8 no match

577 UCCGCAUGUGAAUGUUGGCCCCAGA

8

0 no annotation

578 AUGAUGACCGAAAUUUGGAAAAACGGA

8

1 repeat579 CAACUGUGAGGGGGAUCCUCAA

8 no match

0 transposon

Su(Ste)Su(Ste)Low̲complexity

F-element
Su(Ste)LINE

RR49783
Su(Ste)LINE

R1

Su(Ste)LINE

HelenaSu(Ste)LINEbaggins
Su(Ste)

LINE

INE-1

Su(Ste)pseudogene
LINE

Cr1a

AT-chX-B
LINE

bagginsrRNA

Su(Ste)LTRninja-Dsim-like
Su(Ste)Su(Ste)LINE

1 Su(Ste)baggins

Su(Ste)

ARS406̲DM

580 UACCAGACUGGAUGCAACCCUUAU

8

0 transposon

LINE

Rt1b

581 UGUACUGUUUGUAGGUGUACUGACCC

80 transposon

LINEbaggins

582 UUAAACAAUUGAAAGAUAAGACCCA

8

0 transposon

LINE

Cr1a

583 UAUCAUCGUCGUAGAACAAGCCCGA

80 Su(Ste)

Su(Ste)584 ACUCAUCGUCGUAGAACAAGCCCGA8

1 Su(Ste)

Su(Ste)585 UCUCAUCUCGUAGAACAAGCCCG

8 no match

586 UCUCGAUCGUCGUAGAACAAGCCCGA

8 no match

587 CCUAACGAGGUAGAUGACUCCUGG

8

0 transposon

LINE

Cr1a

588 UGCUCUCGAAUGUAUGCCCGAUAUA

8

0 transposon

LINER1-element

589 UAGACUAAUCGGACAGGUGACUCG

8

0 transposon

LTR

GATE

590 UGUUUCAUCGUUAGACGGCUCGGGG

8

1 AT-chX

AT-chX-B

591 CGUUUCAUCGUUAGACGGCUCGGG

8

1 AT-chX

AT-chX-B

592 UAAUGUCCCUUAAAUCAGCACUCGU

80 no annotation

593 UGAACGUGUCCUGAAAGUAGUUGG

80 Su(Ste)594 UCUGCCCGAUGAGAAGAAUGGCCCG

80 transposon

595 UGUUUCAUCGUUAGACGGCUCUGGC

81 AT-chX

596 AUUGCGGACCGGAGAAGACGUUGAA

8

0 no annotation

597 UCUCUUCGUCGUAGAACAAGCCCGA8

1 Su(Ste)598 UACAUACCUGGGAAGACUUCGGAAGU

8

0 transposon

599 UCGUCAUCGUCGUAGAACAAGCCCGG

8 no match

600 UGUCUCAUCGUUAGACGGCUCGGG

8

1 AT-chX

601 UGUUUCAUCGUUAGACGGCUCGGUC

8

1 AT-chX

602 UCCGCUAGCUUAUUUCUCGGGAUGAA

8

2 transposon

603 CAGCACACAGAGGAGAGCAGAUGAGAA

8 no match

604 UAGAUCUUUACCGUUGACUAGCCCCA

7

1 Su(Ste)

605 UAAAUGCCAGAAUUUUUAUUGGGGUUC

72 transposon

606 UCUGACGAGAACUCGAGCCACGUAG

7

1 no annotation

607 UAGAUCUUCACCGUUGACUAGCCCCACA

7

0 Su(Ste)

Su(Ste)608 UUCAAGCCCGGGUAUUCUGAAGCCAA

7

0 repeattrf

609 UCUCAUCGUCGUAGAACAAGCCCUAGG

7

1 Su(Ste)

610 UGUAUGACCCCUGGUACUGAAAUGCA

7

0 transposon

DNA

Bari1

611 CCCGUACUCUGUGGUGACCAACACA

7

0 transposon

LINEbaggins

612 CUAGAUCUUCACCGUUGACUUCGGCCCA

7 no match

613 UCCGAGUAACCAAUUGAUCCAGCUG

7

1 Su(Ste)

614 ACUGCAUUCGCGUCGAGGCCCAG

7

0 transposon

615 UGUUUCAUCGUUAGACGCUCGGGC

7 no match

616 AACUGUGAGGGAUCCUCAA

7 no match

617 AGAAAGCACCGUUUCCCGUCCGAUCAA

7 no match

618 UAUUAUACCCAGGUGAUUACCACUAU

7619 UGGAUUUUUUUCCGUAUGAGCCAGUG

7 no match

620 UUCUAAUCGUCGUAGAACAAGCCCGA

7

1 Su(Ste)

621 CCCGUACUCUGUGGUGACCAACAC

7

0 transposon

622 AUCCUCAACUUGAGGGAUCCUCAA

7 no match

623 UAUUUCAUCGUUAGACGGCUCGGGC

7624 CAGCACACAGAGGGAGCAGAUGAGAGCA

7 no match

625 CAUGACCUUCGAGGAGCUGCGCGGCA
626 UUUCAUCGUUAGACGGCUCGGG

Su(Ste)LINE

RR49783
AT-chX-B
Su(Ste)LINE

Cr1aAT-chX-B
AT-chX-B

LINE

baggins
Su(Ste)LINEbaggins

Su(Ste)Su(Ste)LINE

0 Su(Ste)

R1-element

Su(Ste)Su(Ste)LINEbaggins

1 AT-chX

AT-chX-B

7

0 coding gene

CG4226-RC¦GluRIIC

7

0 AT-chX

AT-chX-B

627 UAGAUCUUCACCGUUGACUACCCCCA

7

1 Su(Ste)628 UAACAAGAUGCAUGCGAUGUGGC

7

1 transposon

629 UCUCAUCGUCGUAGAUAAGCCCGA

7 no match

630 UCUCAUCGUCGUAGAACAAGCCCGAAG

70 Su(Ste)631 GUCGCUACCAGACGGGAUUACUCUG

7

0 transposon

632 UUAUAAGGAUGAUGAUACCGAUUA

7

0 no annotation

633 CUUAGACAUCCACUCUGUUGGCCA

7

0 transposon

634 GCACACAGAGGAGAGCAGAGAGAGCA

7 no match

635 UCUCAUCGUCGUAGAACAAUCCCG

7

1 Su(Ste)

Su(Ste)636 UCUCAUCUUCGUAGAACAAGCCCAA

7

2 Su(Ste)

Su(Ste)637 UCUCAUCGUCGUAGAACAACCCCGAA

7

1 Su(Ste)

Su(Ste)638 AGAUCUUCACCGUUGACUUGGCCCA

70 Su(Ste)

Su(Ste)639 UUCUCAUCGUCGUAGAACAAGCCCCGA7

2 Su(Ste)

Su(Ste)640 UCCGAGGAACCAAUCGAUCCAGCUG

7

1 Su(Ste)

Su(Ste)641 UGUUUCUAUCGUUAGACGGCUCGGGC

7 no match

642 UCUCAUCGUCGUAGAACGAGCCCG

71 Su(Ste)

Su(Ste)643 GAUCAACUGUGAGGGGAUCCUCAA

7 no match

644 CAAGCCCGGGUAUUCUGAAGCCAAGA

7

0 repeattrf

645 GGAUCUCAACUGUGAGGGGAUCCUCAA

7 no match

646 UCUCAUCGUCGUAGAACAAGCCCGGG

7

1 Su(Ste)

647 UACAAUCUCCGAGCACGACCCCGAUC

7

0 transposon

648 UCUCAUCGUCGUAGAGCAAGCCCG

71 Su(Ste)649 UAUGGCCCGAUCCAUAAAUCCAACU

7

0 no annotation

650 UGCAUAUCAUUCACGCCACGCUCCGACC

70 Su(Ste)

651 GUUCUCAUCGUCGUAGAACAAGCCCGA

7

1 Su(Ste)

652 UCCACCGGGUUUUGGCACUUUGCCGC

70 transposon

653 UCUCAUCGUCGUAGAACAAGCCCCGAGG

7 no match

654 UCCGAGGAACCAAUUGAUUCAGCU

70 Su(Ste)

655 GGUACACCGACUUCUUGAAUUGGGAC

7

1 transposon

656 AAAUCUCAUCGUCGUAGAACAAGCCCGA

7 no match

657 UGUUUCAUCGUUAGACGGCUCAGGC

7658 UGAGAUCCUCAACUGUGAGGUCAA

7 no match

659 UCUGUUUCAUCGUUAGACUACUCGGGAA

7 no match

660 UUGUUAAGGACGAGAAUCUACCCCC

7

0 transposon

661 CUGUUUCAUCGUUAGACGGCUCGGGC

7

0 AT-chX

662 ACAACUGUGAGGGGAUCCUCAA

6 no match

Su(Ste)DNA

1360
Su(Ste)LTRninja-Dsim-like

LINE

F

Su(Ste)LINE

Circe
Su(Ste)Su(Ste)Su(Ste)LINE

R1
Su(Ste)LINE

1 AT-chX

R1-element
AT-chX-B

LTR

diver2AT-chX-B

663 UUAAUGCCGUAAGCGAUCCCACUGC

6

1 AT-chX

664 CAAGAUAUGACCAAAGCAAAGACAU

6

0 transposon

AT-chX-B

665 UCUCAACGUCGUAGAACAAGCCCGA

6

1 Su(Ste)

Su(Ste)666 AAAACCUAGAAGAUGAUCCUGAGUCGC

6 no match

667 UGUUUUAUCGUUAGACGGCUCGGGC

6

1 AT-chX

AT-chX-B

668 CAGCACACAGAGGAGAGCAAUGAGAGCA

6 no match

669 UGUUUCAUCCUUAGACGGCUCGGGC

6

1 AT-chX

AT-chX-B

670 UGGGAACACCGCGUGUUGUUGGCC

60 ncRNA

5SrRNA

671 CAGGCACACAGAGGAGAGCGAGUGAGAGA

6 no match

672 UCAUCUUCUUCUCGACGUUGACCAGC

6

0 transposon

LTR

ninja-Dsim-like

673 UGUUUCAGAGCGUUGGCCAGUUUCC

6

0 transposonLow̲complexity

F-element

674 AAAUCCUCAACUGUGAGGGAUCCUCAA

6 no match

675 UAAGAUCAACGAGAGAUGGCCAUU

6

0 transposon

LTR

opus

676 UCGCAUCGUCGUAGAACAAGCCCGAGG

60 Su(Ste)

Su(Ste)677 UGUUACAUCGUUAGACGGCUCGGG

6

1 AT-chX

AT-chX-B

678 GAUCCUCAACUGUAAGGGGAUCCUCAA

6 no match

679 CCCCGCGGAAAGACGGAAAGACCC

6 no match

680 GACUAGCUGGCCGAGUAUUUGAUAUU

6

0 Su(Ste)

Su(Ste)681 CGCAAGCCGGGCGUCAAGAUGGAC

6

0 coding gene

CG14476-RA¦CG14476

682 CAGCACACAGAGGAGAGCAGAUGAGAC

6 no match

683 CAGCACACAGCGGAGAGCAGAUGAGAGCA

6 no match

684 UGUGGACCUUAUACCCGGGCGGGAC

6685 UGUUUCAUGUUAGACGGCUCGGGC

6 no match

686 CAGUACACAGAGGAGAGCAGAUGAGAGCA

6 no match

687 UCUAAUCGUCGUAGAACAAGCCCGA

6

1 Su(Ste)

688 UACCGAGGGCCGAGUACAUAUCGAG

6

0 transposon

689 UUUCUCAUCUUCGUAGAACAAGCCCG

61 Su(Ste)

690 UGAUCCUCAACUGUGAGGGGAUCCUCAA

6 no match

691 UCUGUAUUCCGUACGUCUAGAUUGG

6692 UAAAUCUCAUCGUCGUAGAACAAGCCCGA

6 no match

693 GCCACAGAGGAGAGCAGAUGAGAGCA

6 no match

694 GGUCAACUGUGAGGGGAUCCUCAA

6 no match

695 UGGACCGAACACUUUGAACCAAGUA

6696 UCUCAUCGUUAGAACAAGCCCGA

6 no match

697 ACAAGAUAUGACCAAAGCAAAGACAC

6698 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACCUCGGGUCAAU

6 no match

699 GAACACCGGCUUCAGGAUCACGUC

60 Su(Ste)

Su(Ste)700 CUUCGGGAUAAGGAUUGGCUCUG

60 ncRNArRNA

701 CUCAUCGUCGUAGAACAAGCCCG

60 Su(Ste)

702 UCAAAUCCGAGAUACUCUAUUUUUGU

60 transposon

703 UCUCAUCGUCGUAGAACAAGCCCCGACUGUAACUCGGGGUCAAU

6 no match

704 UCUCAUCGUCGUUGAACAAGCCCG

61 Su(Ste)

Su(Ste)705 UGAUGACCGAAAUUUGGAAAAACG

6

0 repeat

ARS406̲DM

706 UAGAUCUUCACCGUUGACUAUCCCCA

6

1 Su(Ste)707 UGAAUUUGGCCAGUAUUUCAUCUC

6

0 transposon

LTR

DM88

708 UUUGUUGAUCAGUUUACACAUUAU

6

0 transposon

LINE

Cr1a

709 GAAGCAUUCCGAAAGUUCCGAGUACA

6

0 ncRNA

710 CAGCACACAGAGGAGAGCAGAUGAAGCA

6 no match

711 UCUCAUCGUCGUAGGAACAAGCCCGA

6 no match

712 UAUCUAGAGACCGAAGAUAGUUGA

6

0 transposon

LTR

opus

713 GCUACCGGGCGUGAGCAUCCACAAUGC

6

0 transposon

LTR

ninja-Dsim-like

714 CAAAGGUGGAAAUGAAUAAAGUACA

6 no match

715 UCCAGGCCCAUCUGGUUGAACGUG

6716 CAGCACCCAGAGGAGAGCAGAUGAGAGCA

6 no match

717 UGUCCCAACGUACUGAUCCUGGCC

6718 GGAUCCUCAACUGUGAGGGAAUCCUCAA

6 no match

719 UCUCAUCGUCGUAGAUCAAGCCCG

6720 CAAAUCUGAACGUACCACGGUGCCCCAGUG

6 no match

721 UGUUUCAUCGUCAGACGGCUCGGG
722 UCGGCUUUCUGACGAGAACUCGAGC

DNA

1360

1 no annotation

0 transposon

Su(Ste)LTR

Su(Ste)LINE

0 Su(Ste)0 transposon

G4

G2

Su(Ste)DNA

1360

Su(Ste)LTR

invader2

Su(Ste)ncRNA

0 Su(Ste)

Su(Ste)0 coding gene

CG31453-RA¦CG31453

1 Su(Ste)

Su(Ste)6

1 AT-chX

AT-chX-B

6

0 no annotation

723 CGUUGACCAAUUUCCGAACAUACGA

6

0 transposon

724 UGUUUCAGAGGAGAGCAGAUGAGAGCA

6 no match

725 CUCAACUGUGAGGGGAUCUUCAA

6 no match

726 UUAAUGCCGGAAGCGAUCCCACUGU

6

1 AT-chX

727 UGUUUCAGAGCGUUGGCCAGUUU

60 transposon

728 UUUCUCAUCGUCGUAGAAGAAGCCCGA

6

1 Su(Ste)729 UCUCAUCGUCGUAGAACAAGUCCGAG

6

1 Su(Ste)730 UGGACUUUUUUCCGAUGAGCCAG

6

0 transposon

731 UUCACACGCACAAGGUCCCCGGUUC

60 ncRNAtRNA

732 UCCGAGGAACCAAUCGAUCCAGCU

61 Su(Ste)

Su(Ste)733 UGUUUCAUCGUUAGGCGGCUCGGG

6

1 AT-chX

734 UAAAUGCCAGAACUUUAUUGGGGUGC

61 transposon

735 UGUUUCAUAGUUAGACGGCUCGGGC

6

1 AT-chX

AT-chX-B

736 UGUUUCAUCGUUAGACGGCUCGGGGC

62 AT-chX

AT-chX-B

737 UAAUGUCCCUUAAAUCAGCACUCG

6

0 no annotation

738 GAUGAACCCCAGGAAGCUCACGCU

60 transposon

LTR

springer

739 UACAAUCUCCGAGCACGACCCCGA

6

0 transposon

LINE

Circe

740 UAGAUCUUCACCGUUGACUUGCCCCAU

6

1 Su(Ste)

Su(Ste)741 UCUCAUCGUCGUAGAACUAGCCCCGA

6 no match

742 UCUCACCGUCGUAGAACAAGCCCG

61 Su(Ste)

Su(Ste)743 UUAUAAGGAUGAUGAUACCGACUAAAG

6

0 no annotation

744 CAUUCGGUGGCGAAGUUGGCUCAGA

6

0 transposon

LTR

745 UAAAGAAUCCUGACAAGAUCCCG

6

0 transposon

LTR

LTR

Dm88

AT-chX-B
Low̲complexity

F-element
Su(Ste)Su(Ste)LINE

G2AT-chX-B
LINE

baggins297
invader1

746 UGUUUCAUCGUUAGACGGCUCGA

6747 UGGACUUUUUCCGAUGAGCCAGU

6 no match

1 AT-chX

AT-chX-B

748 UCUCAUCGUCGUAGAACAAGCCCGACG
749 UAGAUCUUCACCGUUGACUUGGCCCC

61 Su(Ste)

Su(Ste)6

1 Su(Ste)

750 UCAUCUUCUUCUAGACGUUGACCA

6

1 transposon

751 UCUCAUCGUAGAACAAGCCCGA

62 Su(Ste)

Su(Ste)752 UGUUUCCGGAUUCUCGACAGCCG

62 ncRNA

alphagamma-element

753 UCCUCAUCGUCGUAGAACAAGCCCGA

6

1 Su(Ste)

Su(Ste)754 UCUCAUCGUCGUAGAACAAGCCCGAAU

51 Su(Ste)755 UUUUAAAACAAUUGAAAGAUAAGACCC

5

1 transposon

756 CCCAUCUGGUUGAACGUGUCCUGAA

50 Su(Ste)757 CACACAGAGGAGAGCAGAUGAGAG

5 no match

758 GGAUCCUCAACUGUGAGGGGACCUCAA

5 no match

759 AUCAUCUUCUUCUCGACGUUGACCA

5

1 transposon

LTR

ninja-Dsim-like

760 UUUAUACCUGAGCCAGUUUGUUUU

5

0 transposonLow̲complexity

F-element

761 UCUCAUCGUCGUAUAACAAGCCCG

51 Su(Ste)762 GGAUCCUCACUGUGAGGGGAUCCUCAA

5 no match

763 UGUACUACCCCUUCAUGACUCAAAGAU

5764 UAACUGUGAGGGGAUCCUCAA

5 no match

765 CAGCACACAGAGGAGAGCGAGAUGAGAGCA

5 no match

766 UGUGAGGAGGAUCCUCAA

5

2 coding geneCG3848-RC¦trr

767 UGUUUCAUCGUUAGACGGCUCGGAC

5

1 AT-chX

AT-chX-B

768 UAGAUCUUCACCGUUGACUACCCC

51 Su(Ste)

Su(Ste)769 UCUCAUCGUGUAGAACAAGUCCGA

5 no match

770 UGGUUUCAUCGUUAGACGGCUCGGGC

5

1 no annotation

771 UCUCAUCGUCGCAGAACAAGCCCG

51 Su(Ste)

772 CACCACACAGAGGAGAGCAGAUGAGAGCA

5 no match

773 UCCGAUGUUUUGAAACUGCGUGACCC

50 transposon

774 UUCGGCUUUCCGACGAGAACUCGAG

5

0 no annotation

775 UCUCAUCAUCGUAGAACUAGCCCGA

5

1 Su(Ste)776 UCAACUGUGAGGGGAUCCUCAAC

5 no match

777 UGGUUCAUCGUUAGACGGCUCGGGC

51 AT-chX

778 UGCGAGGAGGCCCGUAUUACUGUCAC

5

0 transposon

779 UAUAAUCGCCCCGAAGGUUGCCCUCUG

5 no match

780 UCUCAUCGUCGUAGAACGAAGCCCGA

5 no match

781 CAGCACACAGAGGAAGCAGAUGAGAGCA

5 no match

782 UCUCAUCGUCGUAGAACAAGCCCCGAA

5 no match

783 GGAUCCAACUGUGAUCAA

5784 UCUCAUCGUCGUAGAACUAAGCCCGA

5 no match

785 UCUCAUCGUCGUAAAACAAGCCCG

5786 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUCCGGGUCAAU

5 no match

787 UUCUCAUCGUCGUAGAACAAGCCC
788 UCUAGACUCGAAAAUUCGUUUUAUGU

0 transposon

Su(Ste)LTRninja-Dsim-like

Su(Ste)LTR

copia
Su(Ste)Su(Ste)LINE

Fw2

Su(Ste)LTR

flea
Su(Ste)AT-chX-B

LTR

ninja-Dsim-like2 coding gene

CG32540-RB¦CCKLR-17D3

1 Su(Ste)

Su(Ste)50 Su(Ste)

Su(Ste)50 Su(Ste)

Su(Ste)789 CUCUCAUCGUCGUAGAACAAGCCCG

51 Su(Ste)

790 UCAUCUUCUUCUCGACGUUGACUA

5

1 transposon

791 UCUCAUCGUCGUAGAACAACCCCG

51 Su(Ste)792 UACAAUGAUCUGAUCGGGUUUUUCUG

5

0 transposon

793 UCCGAGGAACCAAUUGAUCCCGCUG

5

1 Su(Ste)

Su(Ste)794 ACUCAUAUCCGAGGCCCUGUAAUUG

50 ncRNArRNA

795 CUCACUGUGAGGGGAUCCUCAA

5 no match

796 UCCUUCUGAAGAGUUGUUGGCACGU

50 transposon

797 UCCCAUCGUCGUAGAACAAGCCCGA

5

1 Su(Ste)798 UGACUCUACGUGACGGAACCGGAG

50 transposon

LINE

Rt1b

799 AGAUCCAACUGUGAGGGGAUCCUCAA

5 no match

800 UAGAUGAGGUAUAAGGUUGGCCCA

5

0 transposonLow̲complexity

F-element

801 CAGCACACAGAGGAGAGAGAUGAGAGCA

5 no match

802 CAGCACACAGACGGAGAGCAGAUGAGACGCA

5 no match

803 UCCCAUCCUUAUGAUGACCGCUCGAG

5

0 transposon

LTR

HMS-Beagle

804 CAGCACCAGAGGAGAGCAGAUGAGAGCA

5 no match

805 GUCUCAUCGUCGUAGAACAAGCCCG

51 Su(Ste)

806 UAAAUAAUCCUGACAAGAUCCCGGG

5

1 transposon

807 UAGAUCUUUACCGUUGACUUGGCCCA

5

0 no annotation

808 UCUCAUCGUCGUAACAAGCCCGA

5 no match

809 UGUUUCAUCGUUAGACGGCUGGGC

52 AT-chX

810 UCCAUCGUCGUAGAACAAGCCCGA

5

1 no annotation

811 CCUGAUGAAGAGGAGAUGCCCAGUGA

5

1 transposon

LTR

ninja-Dsim-like

812 CAAGAUAUGACCAAAGCAAAUACAC

5

1 transposon

LINE

Cr1a

813 CAGAUCUUCACCGUUGACUUGCCC

51 Su(Ste)

Su(Ste)814 UAGAUCUUCACCGUUGACUAGCCCCGA

52 Su(Ste)

Su(Ste)815 AUAGAUCUUCACCGUUGACUUGCCCC

51 Su(Ste)

Su(Ste)816 UUAAAGGGCCAAGAUUGAUUCCGUUUU

5 no match

817 UCUCAUCGUCGUGGAAGAAGCCCG

52 Su(Ste)

Su(Ste)818 UGUUUCAUCGUUAGACGGCUCGGCCCG

5

2 AT-chX

AT-chX-B

819 UCGGCUUUCCGGCGAGAACUCGAGC

50 no annotation

820 UUUUCUCAUCGUCGUAGAACAAGCCCGA

50 Su(Ste)821 GCACACGGAGGAGAGCAGAUGAGAGCA

5 no match

822 GCCCCGUACUCUGUGGUGACCAACACAC

5

0 transposon

823 UCUUCACCGUUGACUUGGCCCACACA

50 Su(Ste)

Su(Ste)824 UCAUCGUCGUAUAACAAGCCCGA

5

1 Su(Ste)

Su(Ste)825 UUUCUGACGAGAACUCGAGCCGCGUAG

5

0 no annotation

826 AAAACCUGAAGGUGAUCCUGAGUCGCA

5

1 transposon

827 AUCGUCUCGGGGAUGAACAGCACACAGAGGAGAGCAGAUGAGAGCA

5 no match

828 UCUCAUCUUCGUAGAAGAAGCCCGA

52 Su(Ste)

Su(Ste)LTRninja-Dsim-like
Su(Ste)

LINE

LTR

Cr1a

GATE
Su(Ste)Su(Ste)LTR

invader1AT-chX-B

Su(Ste)LINELINEbaggins

HelenaSu(Ste)829 UAAGUAAGCCCGAAGAUUGUCCA

5

0 transposon

830 UCUCAUCGUCGUAGAAGAAGCCCGAA

5

1 Su(Ste)

LTR

Su(Ste)831 UCUCAUCAUCGUAGAACAAGCCCGAA

5

1 Su(Ste)

Su(Ste)832 CAGCACACAGAGGAGAGCAGAUGAGGAGCA

5 no match

833 AUCCUCAACUGUGAGAUCCUCAA

5 no match

834 GCCCGGCUAGCUCAGUCGGUAGAGCA

50 ncRNAtRNA

835 UCUUCACCGUUGACUUGCCCCGCA

50 Su(Ste)

Su(Ste)836 GGAUCCUCAACUGUGAGG

52 coding gene

CG13506-RA¦CG13506

837 UCUGACGAGAACUCGAGCCGCGUAG

5

0 no annotation

838 AUAACUGUGAGGGGAUCCUCAA

5 no match

839 CAGCACACAGAGGAGAGCAGAUGAGAGCACUGUAACUCGGGGUCAAU

5 no match

840 CAAGAUAUGACCAAAGCAAAGACAA

5

1 transposon

841 GUAGAUCUUCACCGUUGACUUGCCCC

50 Su(Ste)842 UGACCGUAGCACCGAACGAGCUCCU

50 transposon

843 AAACCUAGUUACUUACGGGCUCGACA

50 Su(Ste)

Su(Ste)844 AACUUCGGGAUAAGGAUUGGCUC

50 ncRNArRNA

845 UAGAUCUCCACCGUUGACUAGCCCC

51 Su(Ste)

846 AGCAGUUUCCAGACGCAGCCCGGCC

50 transposon

847 AUCUCAUCGUCGUAGAAGAAGCCCCGA

5 no match

848 ACAACCAGAGAUCUAGAGGGCCCAA

5

0 no annotation

849 AUCAUCGUCGUAGAACAAGCCCGA

50 Su(Ste)

850 UUUUCGCAUCGUCGUAGAACAAGCCCG

50 Su(Ste)851 UGUACUACCCCUUCAUGACUCAAAG

5

0 transposon

852 UCCUCAACUGUGAGGAUCCUCAA

5 no match

853 UCUGACGAGAACUCGAGCCGCGUAGCC

5854 CGAAAUCUCAUCGUCGUAGAACAGCCCGA

5 no match

855 AUAGAUCUUCACCGUUGACUUGGCCCA

5856 UCUCAUCGUCGUAGAACAAGCCCCUC

5 no match

857 UCUCAUCAUCGUAACAAGCCCGA

5 no match

858 UGCAUAUCAUUCACGCCAAGCUCCGA
859 UGUUUCAUCGUUAGACGGCUGGC
860 GGGAACUGUGAGGGGAUCCUCAA

5 no match

861 CCUCAACUGUGAGGGGGAUCCUCAA

5 no match

862 UCAAUCGCGGGUGCAAUCGAAUGUUGC

50 coding gene

863 UCGCUACCAGACGGGAUUACUCUG

50 transposon

864 UAGAUCUUCACCGUUGACUUGCCCCG

50 Su(Ste)865 UUCACGUCUGGCGAUUUUGACUCAUU

5

0 transposon

LTR

mdg3

866 UGAGCCGACGAGAUGCCCAGGGCGUG

50 transposon

LTR

ninja-Dsim-like

867 UCUCAUCGUCGUAGAACUAGCCCGAGG

50 Su(Ste)868 UCGUCAUCGUCGUAGAAGAAGCCCGGA

5 no match

869 UAAUGCCGGAAGCGAUCCCACUGC

5

0 AT-chX

870 GUCGCUACCAGACGGGAUUACUCU

5

0 transposon

871 UCUCAUCGUCGUGGAACAAGCCCG

51 Su(Ste)872 UAACAAGAUGCAUACGAUGUGG

50 transposon

873 GCCAGGCCCGUAUAACGUUAAUGAUU

50 ncRNArRNA

874 CCUAACUGUGAGGGGAUCCUCAA

5 no match

875 UAAGAAGAUGUCCGGACAGCUGGG

50 Su(Ste)

Su(Ste)876 UCUCAUCGUCGUAGACCAAGCCCGA

5

1 Su(Ste)

Su(Ste)877 UCUCAUCAUCGUAGAACAAGCCCGAG

5

1 Su(Ste)

Su(Ste)878 GGAUCAACUGUGAGGGAUCCUCA

5 no match

879 UGCAAGGUUACCCCAGGUGCUGU

5 no match

880 AUCCUAACUGUGAGGGGAUCCUCAA

5 no match

881 CAAUGAGAUAGCAUUUGGCGAGAGU

50 transposon

882 UAUGACCGAAAUUCGGAAAAACGGA

50 repeat

SAR̲DM

883 UCUUCACCGUUGACUUGGCCCACAC

50 Su(Ste)

Su(Ste)884 UGUUUCACCGUUAGACGGCUCGGG

5

1 AT-chX

AT-chX-B

885 UCUCAUCGUCGUAGAACAAGCCCGACUGUA

4 no match

886 UCGACUACAUUCAGGACCCGUUCAA

4

0 coding gene

CG40635-RA¦CG40635

887 UUAUAAGGAUGAUGAUACCGACUA

40 no annotation

888 AUUUUCAUCGUUAGACGGCUCGGGC

42 AT-chX

889 UCCAACUGAAGGAGUACGAAUGAUCGC

40 transposon

LINER1-element

890 UAGACUAAUCGGACAGGUGACUCGG

40 transposon

LTR

GATE

891 UGUUUCAGAGCGUUGGCCAGUUUC

4

0 transposonLow̲complexity

F-element

892 UUCGCAUCGUCGUAGAACAAGCCCG

40 Su(Ste)

Su(Ste)893 UAAUGACCGAAAUUAGGGAAUCAG

40 repeat

SAR̲DM894 UAGAGAGUGAUGCCGAGUAUAAAAG

4

0 repeattrf

895 UCUCGUCGUCGUAGAACAAGCCCCGA

4 no match

896 UCUCAUCGUCGUGAACAAGCCCG

4 no match

897 UACAGUAUUGGUCCAAGAACGCUGCCU

40 transposon

LINE

G

898 UUCAUCUUCUUCUCGACGUUGACCA

4

0 transposon

LTR

ninja-Dsim-like

899 UCUGACGAGAACUCGAGCCGCGUAGC

4

0 no annotation

900 CUCCUGUGAGGGGAUCCUCAA

4 no match

901 UCAACGUCCCCAAGAACUCCCGGU

40 transposon

LINE

G2

902 UCUUUCAUCGUUAGACGGCUCGGG

4

1 AT-chX

903 AUAAACUGUGAGGGGAUCCUCAA

4 no match

904 UGUUUCAUCGUUAACGGCUCGGGC

4 no match

905 UCAACCGGACGGGCCUAGAGUUAUUC

4

0 coding gene

906 UGUACUGUUUGUAGGUGUACUGGCCCAG

4

0 transposon

907 AAACUUCGGGAUAAGGAUUGGCUCU

4

1 ncRNA

908 AGCCCCGUACUCUGUGGUGACCAACA

4

0 transposon

LINEbaggins

909 GAAGAUCAUUCCCUUCGCAACCCG

40 transposon

LTR

ninja-Dsim-like

910 GGAUCCUCAACUGUGAGGGGAUCUCAA

4 no match

911 UUCAACUGAAGGAGUACGAAUGAUC

4

0 transposon

LINER1-element

LINE

opus

Cr1a
Su(Ste)

LINE

Rt1b

Su(Ste)LTRninja-Dsim-like

Su(Ste)Su(Ste)LINE

Fw2

0 no annotation
1 Su(Ste)

Su(Ste)50 Su(Ste)

Su(Ste)5

2 AT-chX

AT-chX-B

pseudogene
LTR

ninja-Dsim-like
Su(Ste)Su(Ste)AT-chX-B
LTR

ninja-Dsim-like
Su(Ste)

DNA

LTR

1360

diver2AT-chX-B

AT-chX-B

CG40635-RA¦CG40635
LINE

bagginsrRNA912 UAGGUUAUGGGCCCAGUAAACAUU

4913 UCUCAUCGUCGUGAAGAAGCCCGA

4 no match

0 ncRNA

alphagamma-element

914 UAGGUUAUGGGCCCAGUAAACAUUU

40 ncRNA

915 UCAAUACGACCCGGUUUAUUAAAA

4

0 transposon

LTR

mdg1

916 UAAGUAAGCCCGAAGAUUGUCCAAUGA

4

0 transposon

LTR

opus

917 UAGAUCUUACCGUUGACUUGGCCC

4 no match

918 UCUCAUCGUCGUAGAACAAGCCCCAA

4

1 Su(Ste)

Su(Ste)919 GAUCUUCACCGUUGACUUGCCCCA

40 Su(Ste)

Su(Ste)920 UUCUCAUCGUCGUAGAACAAGCCCGU

4

1 Su(Ste)

Su(Ste)921 GGGAUCCUCAACUGUGAGGGAUCCUCAA

4 no match

922 AUCUCAUCGUCGUAGAACAACGCCCGA

4 no match

923 GACGCGAGAUGUGAAAUUCUUGGACC

4

1 ncRNA

924 CGUUGACCAAUUUCCGAACAUACGCCA

4

0 transposon

LTR

DM88

925 GAUCUCGGAUCUUGUUGUUGACCAG

4

0 transposon

LINE

G3

926 UCUUCACCGUUGACUUGGCCCAC

40 Su(Ste)927 UCCGAGGAACCCAUUGAUCCAGCUG

40 no annotation

928 AUAGAUCUUCACCGUUGACUAGCCCC

41 Su(Ste)

Su(Ste)929 GUUCAACCGGACGGGCCUAGAGUUA

40 coding gene

CG40635-RA¦CG40635

930 AUCGUCUCGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

4 no match

931 UCCCUGAUGAAGAAGAGAUGCCCAUUU

4

2 transposon

932 AUCUCGUCGUCGUAGAACAAGCCCGA

42 Su(Ste)

Su(Ste)933 GCAAAGGUGGAAAUGAAGAAAGUACA

4 no match

934 AUCGGUCUCGGGAAUAGAAAAUGUUUCAUCGUUAGACGGCUCGGGC

4 no match

935 UCCGAGGAACCAAUUGAUUCAGCUGC

41 Su(Ste)

Su(Ste)936 UCUCAUCGUCGUAGAACAAGCCUGAG

4

1 Su(Ste)

Su(Ste)937 UCCAACUGUGAGGGGAUCCUCAA

4 no match

938 UCUCAUCGUCGUUAGAACAAGCCCGA

4 no match

939 UGUUUCAUCGUUAGACGGCUCGGGCCG

4

1 AT-chX

AT-chX-B

940 GAUCUCAACUGUGAGGGGAUCCUCAA

4 no match

941 UGUACUGACCCAGUCGGAUCUAUU

40 transposon

942 UGUUUCAUCGUUAGACGGCACGGG

4

1 AT-chX

943 UAAGGUUGGCCCAAGAACGCUGCCU

40 transposonLow̲complexity

F-element

944 CAGCACACAGAGGGGAGCAGAUGAGAGCA

4 no match

945 UGUUUCAUCGUUAGACCGACUCGGGC

4 no match

946 UCGCUACCAGACGGGAUUACUCU

40 transposon

LTR

ninja-Dsim-like

947 GGAUCCUCAACUGUGAGGGGGUCCUCAA

4 no match

948 UCAUCUUCUUCUCGACGCUGACCA

4

1 transposon

LTR

ninja-Dsim-like

949 UUCCUCGGAAUCAAGGGCAACGAGU

40 Su(Ste)

Su(Ste)950 UGUUUAAUCGUUAGACGGCUCGGGC

4

1 AT-chX

AT-chX-B

951 UGUUUAAUCGUUAGACGGCUCGGG

4

1 AT-chX

952 UCAUCUUCUUCUCGACGUUGACCAGCC

40 transposon

953 UGUUUCAUCGUUAGACGACUCGGGCU

42 AT-chX

954 UAGACUAAUCGGACAGGUGACUCGGA

4

0 transposon

LTR

GATE

955 UCAUCUUCUUCUCUACGUUGACCA

4

1 transposon

LTR

ninja-Dsim-like

956 CGUUGGACCAAUUUCCGAACAUACGCCUG

4 no match

957 CUGCACACAGAGGAGAGCAGAUGAGAGCA

4 no match

958 UCAAAUCCGAGAUACUCAUUUUUGU

4 no match

959 UCUCAUCGUCGUAGAACUAGCCCGU

4960 CAAACUGUGAGGGGGAGUCCUCAA

4 no match

961 GUGCUCUGGACCCUGGACAUUGG

4

0 no annotation

962 GUAGAUCUUCACCGUUGACUAGCCCC

40 Su(Ste)963 CUCAUCUUCUUCUCGACGUUCGACCA

4 no match

964 CAGAUACCCGUUACUCAGCUAGU

40 transposon

965 UACUCAUCGUCGUAGAACUAGCCCGA

4

1 Su(Ste)966 AAAGAACCCGAUUCCUCUUCCAUGAGA

4

0 transposon

967 ACCAAAGUCUCUGAUGGUUUGACA

40 ncRNA

pseudogene

968 UGUUUCAUCGUUAGACCGCUCGGGC

4

1 AT-chX

AT-chX-B

969 UUCCUCGGGAUCAAGGGCAACGAGUC

4

1 coding gene

CG40635-RA¦CG40635

970 UCUCAUCGUUGUAGAACAAGCCCG

41 Su(Ste)

Su(Ste)971 UCUCAUCGUCGUAGAACUAGC

40 Su(Ste)

Su(Ste)972 UAGAUCUUCACCGUUGACUAGCCCCAU

4

1 Su(Ste)

Su(Ste)973 AAUCUCAACUGUGAGGGGAUCCUCAA

4 no match

974 UGAUACCGAGAAUGACAAUGGUUGAU

4

0 transposon

LTR

975 CUCUAGAGAGAGGUGGCUCCAUGC

4

1 transposon

DNA

976 UCCGAGGAAAAAAUUGAUCCAGCAGC

40 Su(Ste)

Su(Ste)977 UGUUUCAUCAUUAGACGGCUCGGGC

4

1 AT-chX

AT-chX-B

978 UCUCAUCGUCGUAGAACAAGCCCGACUA

42 Su(Ste)

Su(Ste)979 UCCCAACUGUGAGGGGAUCCUCAA

4 no match

980 UAUGACCAGCUUGGACCGAACACUU

40 Su(Ste)

Su(Ste)981 UGUUUCAUCGUUAUACGGCUCGGC

42 AT-chX

AT-chX-B

982 UCUUCACCGUUGACUUGCCCCGCAAA

40 Su(Ste)

Su(Ste)983 UCUCAUCGUCGUAGAACAAGCCCAAA

41 Su(Ste)

984 UGGAUUUUUUUUCCGAUGAGCCAGUG

4

2 transposon

LINE

G2

985 UCAAAGAUCCCCCUGAAGUCCAAUGC

40 transposon

LINEbaggins

986 GCAUCCUCAACUGUGAGGGGAUCCUCAA

4 no match

987 UCGACUAUUUACGAGACCACCCGA

4

0 transposon

DNA

H

988 CGAAAUCCAAGCUGAUGAUCCGGCA

40 transposon

LINE

BS

989 GCCCGAUGAGAAGAAUGGCCCGUAAA

40 transposon

LINE

RR49783

990 GUAGAUCUACACCGUUGACUAGCCC

41 Su(Ste)991 GCAUACAGAGGAGAGCAGAUGAGAGCA

4 no match

992 UGGAUUUUUUUCCGAUGAGCCAGUG

4

1 transposon

993 UGGUUUCAUCGUUAGACGGCUCGGGCG

4

1 no annotation

994 UCAUCUUCUUCUCGACGUUGCCA

42 transposonalphagamma-elementrRNA

Su(Ste)LTR

LINEninja-Dsim-likebaggins
AT-chX-B

AT-chX-B
LTR

ninja-Dsim-like
AT-chX-B

1 Su(Ste)

Su(Ste)Su(Ste)LINE

INE-1
Su(Ste)

LINE

Doc4

gypsy31360

Su(Ste)Su(Ste)
LINE

G2

LTR

ninja-Dsim-like995 CUGUGAACGAGUGAACUGGCAACAUG

40 Su(Ste)

Su(Ste)996 UGCUUGAUAUGACCAGCUUGGACCG

40 Su(Ste)

Su(Ste)997 CCUCAUCGUCGUAGAACAAGCCCGAG

4

1 Su(Ste)998 UCCAGUCUCCCGACUAUCAGAUACCCG

40 transposon

999 UCUCAUCGUCGUAGUACAAGCCCGC

42 Su(Ste)

1000 AUCGUCAUCGUCGUAGAACAAGCCCGG

4 no match

1001 AUUCCGAUCUUGGACAUUCCCGAUG

40 transposon1002 UCUCAUCAUCGUAUAACAAGCCCGA

4

1 Su(Ste)

Su(Ste)1003 UAGAUCUUCACCGUUGACUAGCC

40 Su(Ste)

Su(Ste)1004 AUAGAUCUUCACCGUUGACUUGCCCCA

4

1 Su(Ste)

Su(Ste)1005 AUCGUCUCGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGGC

4 no match

1006 GCAAAGAGAUGGACGCCGUGAGACA

41007 CAGCACACAGAGGAGGGCAGAUGAGACA

4 no match

1008 AUUCAUCGUCGUAGAACAAGCCCGA

41009 UCUCAUCGUCGUAGAACAAGUCCCGA

4 no match

1010 GCACACAGAGGAGAGAGAUGAGAGCA

4 no match

1011 UAAGGAUGAUGAUACCGACUAAAGGCAA

40 no annotation

1012 UCUCAUUGUCGUAGAACAAGCCCG

41 Su(Ste)1013 CUCAACUGUGAGGGGAGUCCUCAA

4 no match

1014 AGCCGAACGUAGUCUCUCGAGAGCGA

4

1 transposon

LTR

invader1

1015 GCCAAAGUACCGUUACGAGUGAGGC

40 transposon

DNA

invader2

1016 CAAGAUAUGACCAAAGCAAAGA

4

0 transposon

LINE

Cr1a

1017 UCUCAUCAUCGUAGAACAAGCCCCGA

4 no match

1018 UGGUUUCAUCGUUAGACGGCUCGGGCCGUGUAACGUCGGGUCAAU

4 no match

1019 GCCCCGUACUCUGUGGUGACCAACACA

4

0 transposon

LINEbaggins

1020 UAGGCUGAGCGGAGAACCAGAGUUG

40 transposonLow̲complexity

F-element

1021 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUCGGGGUCAAU

4 no match

1022 AAUCUCAUCGUCGUAGAACAAGCCCG

42 Su(Ste)1023 UUCGAGAAGCGUUUGAUCGAGUGUGG

40 transposon1024 UCACGCGGGAGACCGGGGUUCAAUU

40 ncRNAtRNA

1025 CGUUUCAUCGUUAGACGGCUCGGCC

42 AT-chX

AT-chX-B

1026 UGUUUCAUCGUUAGACGGCUCGGCU

42 AT-chX

1027 CAAGAUAUGACCAAAGCAAAGCCAC

4

1 transposon1028 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACGUCGGGUCAAU

4 no match

1029 UUCCGAGGAACCAAUUGGUCCAGCUG

4

1 Su(Ste)1030 CAAGAUGUGACCAAAGCAAAGACUA

42 transposon

1031 UGUUUCAUCGUUUGACGGCUCGGGC

4

1 AT-chX

1032 GUAUGACCCCUGGUACUGAAAUGCAGA

40 transposon1033 CUCUCAUCGUCGUAGAACUACGCCCGA

4 no match

1034 UAGAGAGUGAUGCCGAGUAUAAAA

40 repeattrf

1035 UCCAGGCCCAUCUGGUUGAACGUGU

40 Su(Ste)

Su(Ste)1036 GAGAGGCGCCGUAGUUACCACCCCA

40 no annotation

1037 AUGGUUUCAUCGUUAGACGGCUCGGGCCG

4 no match

1038 UACAAUCUCCGAGCAAGACCCCGAUCU

40 transposon

LINE

Circe

1039 GCCCCGUACUCUGUGGUGACCAACAA

4

1 transposon

LINEbaggins

1040 CAGCACACAGAGGAGAGCAGAUGAGGCA

4 no match

1041 GCGACACAGAGGAGAGCAGGAUGAGAGCA

4 no match

1042 AGCCCCGUACUCUGCGGUGACCAA

4

0 transposon

LINEbaggins

1043 AUUAAUACCUCGAGUACGUCUGCUCU

4

1 transposon

LTR

Max

1044 GUCGCGAUCCCCAGUGAGUAUGUUU

40 transposonLow̲complexity

F-element

1045 GAUCCCCCUGAAGUCCAAUGCACUG

4

0 transposon

LINEbaggins

1046 ACCGUCAUUCCAGCGCAAGUUGCCCC

40 transposon

LTR

ninja-Dsim-like

1047 AGGUGGAAAUGAAGAAAGUACA

4 no match

1048 CAGCACGACAGAAGGAGAGCAGAUGAGAGCA

4 no match

1049 UUCUUCUCGACGUUGACCAGCCUC

40 transposon

LTR

ninja-Dsim-like

1050 GAAUUACUUACCGAGGGUUGUCCAGG

4

1 Su(Ste)1051 UGGACUUUUUUUCCGAUGAGCCAGU

4

1 transposon

1052 AUAGAUCUUCACCGUUGACUUGGCCC

41 Su(Ste)1053 UAUAAUGCCCCGAAGGUUGCCCUCUG

40 transposon

1054 UUCGCAAAAGUUGACCGAACUUGAU

40 ncRNArRNA

1055 UUCUCGUCGUCGUAGAACAAGCCCGA

4

1 Su(Ste)

Su(Ste)1056 UUCUCAUCGUCGUAGAACAGGCCCG

41 Su(Ste)

Su(Ste)1057 AUUAUACCCAGGUGAUUACCACUAU

40 Su(Ste)

Su(Ste)1058 ACCUGAGAGGGUGACCGGCCACAGGGGCA

4 no match

1059 CACACAGAGGAGACAGAUGAGAGCA

4 no match

1060 AUUAUACCCAGGUGAUUACCACUAUU

40 Su(Ste)

Su(Ste)1061 UCUCAUCUUCGUAGAACAAGCCCGAG

4

1 Su(Ste)

Su(Ste)1062 UCUCAUCUUCGUAGAACAGCCCGA

4 no match

1063 UCUCAUCGUCGUAGAACAAGCCUG

4

1 Su(Ste)

Su(Ste)1064 UGUUCCAUCGUUAGACGGCUCGGG

4

1 AT-chX

AT-chX-B

1065 UUUCAUCGUUAGACGGCUCGGGC

40 AT-chX

AT-chX-B

1066 UCUCAUCGUCGUAGAACAAGUCCG

41 Su(Ste)1067 UAACAACGUCAACCUGAGGCAUUGG

4

0 transposon

LTR

diver21068 UAAUGCCCCGAAGGUUGCCCUCUGU

40 transposon

LINER1-element1069 UGUUUCAUCGUUAGACGGGCUCGGGC

4 no match

1070 CGAAAUCUCAUCGUCGUAGAACUAGCCCGA

4 no match

1071 UGUAUGACCCCUGGUACUAAAUGCAGA

4 no match

1072 UAGACCUAGAGCAUCCAAAAAACUU

4

0 transposon

LTR

gypsy81073 UAAGAUCUUCACCGUUGACUAGCCCCA

42 Su(Ste)1074 UAACGAGGUAGAUGACUCCUGGAA

4

0 transposon

1075 UCCGUGCUCCUGCGAACCAUCACCA

40 coding gene

CG4445-RA¦pgant3

1076 AUCUCAUCGUCGUAGAACAAGCCCGU

42 Su(Ste)

Su(Ste)1077 UCUUACGAGAACUCGAGCCUUA

4 no match

0 transposon

Su(Ste)LINE

INE-1
Su(Ste)

LTR

LTR

roo

ninja-Dsim-like

1 no annotation

Su(Ste)Su(Ste)LINE

BS3AT-chX-B
LINE

Cr1a
Su(Ste)DNA

1360
AT-chX-B

DNA

Bari1

Su(Ste)LINE

G2
Su(Ste)LINE

R1-element

Su(Ste)Su(Ste)LINE

Cr1a

1078 UCUCAUCGUCGUACCAAGCCCG

4 no match

1079 AUCGUCUCGGGACUGAAACUCUCAUCCGUUCGUACGAACAACCGCCCGUA4 no match
1080 UAAUGCCAGAAUUUUAUGGGGU

4 no match

1081 UACGGUGCCCAAAUUAACAACUCAUG

40 ncRNA

1082 UGUUUCAUCGUUAGACAGCUCGGG

4

1 AT-chX

1083 AAAAAAAAAAAACUA

40 transposon1084 UUAUAAGGAUGAUGAUACCGACUAA

4

0 no annotation

1085 GAUUACCGAGGGCCGAGUACAUAUCGA

4

0 transposon1086 GCACACAGAGGAGAGCAGAUGAGAG

4 no match

1087 GCUGCGAGAUACCCGUGAACAGCAGUC

41088 AAAUCUCAUCGUCGUAGAACAAGCCCG

4 no match

1089 UGCUCUCGAAUGUAUGCCCGAUA

40 transposon

1090 CAACCGGACGGGCCUAGAGUUAUUCCCC

40 coding gene1091 UUCGGCUUUCCGACGAGAACUCGAGC

40 no annotation

1092 GGCUUUCUGACGAGAACUCGAGCC

40 no annotation

1093 GCCAGACAAGCGUCCCGGACUAGAAGC

40 transposon

LINE

R1

1094 GUGACUGAUCUAGAGUACAAUGUU

4

0 transposon

LTR

DM88

1095 UAGAUCUUCACCGUUGACUUGCCCCAC

40 Su(Ste)

Su(Ste)1096 UCUUCACCGUUGACUUGGCCCACA

40 Su(Ste)

Su(Ste)1097 UGUCACGCGGGAGACCGGGGUUCAA

40 ncRNA

1098 CAAGAUAUGACCAAAACAAAGACAC

4

0 transposon

DNA1099 UAACGACCAGACAUACGCCAUAAUC

4

0 transposon

LINE1100 UCUCGUCGUCGUAGAACAAGCCCG

41 Su(Ste)1101 AUACCUCAACUGUGAGGGAUCCUCAA

4 no match

1102 CAGCACACAGAGGAGAGCAGACGAGAGCA

3 no match

1103 GCCAAUUACAUUAGACGAGACGGCCC

31104 GGAUUCAACUGUGAGGGGAUCCUCAA

3 no match

1105 CCUAUUACAGGAGAUAUUUGGACACGA

31106 AGAAAAAAACCUGAAGAUGAUCCUGAGUCGCA

3 no match

1107 UGUACUGACCCAGUCGGAUCUAUUGU

3

0 transposon

LINEbaggins

1108 UAACGACCAUACAUACGCCAUAAUCU

3

1 transposon

LINE

R1

1109 UUUCUCAUCGUCGUAGAACAAACCCGA

3

1 Su(Ste)1110 UUCAAGGUUACCCCAGGAUGCUG

30 repeat1111 UUCGCUAGUCCGUCCGAUUCUCGAGU

30 transposon

LINE

Cr1a

1112 CCAAUGAUUAGCAAGUUAAUUGAACC

30 transposon

Unknown

RR50960

1113 UCUCAUCAUCGUAGAACGAGCCCGA

3

1 Su(Ste)1114 UAAAUGCCAGAUUUAUUGGGGUUC

3 no match

1115 UAAAUUCCAGAAUUUUAUUGGGGU

31 transposon

1116 UCUCAUCGUCGUAGAACUAGCCCGUA

32 Su(Ste)

Su(Ste)1117 UACUCGAUCGUCGUAGAACAAGCCCGACG

3 no match

1118 AGAAAAAAACCUGAAGAUGAUCCUGAGUCG

3 no match

1119 UUACCGGUAUAGCACACUUUUGUA

30 coding gene

CG41580-RA¦CG41580

1120 UCGAUCUUCACCGUUGACUUGGCCCA

3

1 Su(Ste)

Su(Ste)1121 UUCCGAGGAACCAAUUGAUUCAGCU

30 Su(Ste)

Su(Ste)1122 GUCUCAUCAUCGUAGAACAAGCCCGAU

3

1 Su(Ste)

Su(Ste)1123 UCUCAUCGUCGUAUAACAAGCCCAA

32 Su(Ste)

Su(Ste)1124 GUAGAGAGUGAUGCCGAGUAUAAAA

30 repeat1125 UGUUUCUGCCGAACGUAGUCUCGAG

3

2 transposon

1126 UACUCAUCAUCGUAGAACAAGCCCGA

3

1 Su(Ste)

Su(Ste)1127 UUCUCAUCGUCGUAGAACAAGCCCGAG

3

0 Su(Ste)

Su(Ste)1128 CUCAACUGUGAGGGGGAUCCUCAA

3 no match

1129 GUCUCGGGAGAAACUCAA

3

1 no annotation

1130 UCCGGAGAGGGAGCCUGAGAAACG

30 ncRNA

rRNA

1131 UCUCAUCAUCGUAGACCAAGCCCGA

3

1 Su(Ste)

Su(Ste)1132 GUGUUUCAUCGUUAGACGGCUCGGGU

32 AT-chX

AT-chX-B

1133 UAUAAGGAUGAUGAUACCGACUAAA

30 no annotation

1134 ACGGUGCCCAAAUUAACAACUCAUG

30 ncRNA

1135 ACAUGCAAGUCGAACGGCUCUUCGGAG

3 no match

1136 AGCACCGUUUCCCGUCCGAUCAA

3 no match

1137 UGUCAUCGUUAGACGGCUCGGGC

3

1 AT-chX

1138 UUAUCGACUCGUGUACCUGGUUAAUU

3

0 transposon

1139 GGAUCCUAACUGUGAGGGGAUCCUCAA

3 no match

1140 UGUUUCAUCGUUAGACGCCUCGGGC

3

1 AT-chX

1141 UCAUCUUCAUCUCGACGUUGACCAG

3

1 transposon

LTR

ninja-Dsim-like1142 UGUACUGUUUGUAGGUGUACUGACCCAG

3

0 transposon

LINEbaggins

1143 UUAUCGACUCGUGUACCUGGUUAA

30 transposon

LTR

micropia1144 AUCGUCGUCGGGAUAGAAAUGUUUCAUCGUUAGACGGCUCGGGC

3 no match

1145 GACUAGCUGGCCGAGGAUCCGAUUUU

31146 GGCAACUGUGAGGGGAUCUCAA

3 no match

1147 UGGACCGAACACUUUGAACCAAGUAU

31148 ACUUCAACUGUGAGGGGAUCCUCAA

3 no match

1149 UCCGAUCUCCCUAGUCGGACUCCGAGC

31150 CAUGGAUUGGCUUGUUUGUUCA

3 no match

1151 CGAAAUCUCAUCGUCGUAGAACCAAGCCCGA

3 no match

1152 UUCGCCCAAGUUGCUCUCCCUUUG
1153 UCAUAUGAUCUGAGAAUAUGUUUCrRNA
AT-chX-B
LTR

qbert

LTR

G4

0 coding gene

0 transposon

CG12734-RA¦CG12734
LINE

R1-element
CG40635-RA¦CG40635

tRNA
1360
R1
Su(Ste)LTR

0 Su(Ste)

opus
Su(Ste)Su(Ste)trf

Su(Ste)LINEbagginstrf
LTR

invader1rRNA

AT-chX-B
LTR

micropia
AT-chX-B

0 Su(Ste)

Su(Ste)0 Su(Ste)

Su(Ste)1 transposon

LINER1-element

3

0 transposon

LTR

micropia

3

0 transposon

LINE

Cr1a

1154 UCUCAUCGUCGUAAAACAAGCCCGA

3

1 Su(Ste)

Su(Ste)1155 UUCUCAUCGUCGUAGAACAAGCCAGA

3

1 Su(Ste)

Su(Ste)1156 AUCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGUCAAU

3 no match

1157 AAGAAGCACCGUUUCCCGUCCGAUCAA

3 no match

1158 UCGUCCAUCCUGACUAGCUGAUCCCCU

3

1 transposon

LTR

flea

1159 AUAAAUGCCAGAAUUUUUAUUGGGGUUC

32 transposon

LINEbaggins

1160 UUCUUGACAACCCGAUCGGACCU

30 transposon

LTR

invader4

1161 AAAACCUAGAAGAUGAUCCUGAGUCGCA

3 no match

1162 AUACUCAUCGUCGUAGAACAAGCCCGA

31163 UUCAAGGUUACCCCCAGGAUGCUGUGC

3 no match

1164 UGUUUCAUCGUUAGACGGCUCGGGCCUC

3 no match

1165 UGGAUCUUCACCGUUGACUUGCCC

31166 UGUUUCGAUCGUUAGACGGCUCGGGC

3 no match

1167 GACACUGCAUUUGCGUCGAGGCCCAG

3

0 transposon

LINER1-element1168 UUAUUGUGCCACUGAGUCGACUAUU

30 transposon

LINE

Cr1a

1169 UAGAUUCGGCUAGUUACUCUUCUAA

3

0 transposon

LINE

Circe

1170 CAGCACACAGAGGAGAGCAGAUGAGACGCA

3 no match

1171 UAAUGCCCCGUAGGUUGCCCUCUG

30 transposon

LINER1-element

1172 CAAGAUAUGACCAAGGUUCAAGAUUU

3 no match

1173 CAGCACACAGACGGAGAGCAGAUGAGACGCUA

3 no match

1174 CUUCAACUGUGAGGGGAUCCUCAA

3 no match

1175 UGAUUCAUCGUUAGACGGCUCGGGC

3

1 AT-chX

AT-chX-B

1176 UCUCAUCGUCGCAGAACAAGCCCGC

32 Su(Ste)

Su(Ste)1177 GCCGUCGAGAGAUAUCGGAAGAGUUU

30 ncRNArRNA

1178 CGAAAUGUUUCAUCGUUAGACGGCUCGGG

3 no match

1179 AAAAUCUCAUCUUCGUAGAACAAGCCCGA

3 no match

1180 UACAAUGAUCUGAUCGGGUUUUUC

30 transposon

LINE

Cr1a

1181 UGCCGAACGUAGUCUCUCGAGAGCGAG

3

0 transposon

LTR

invader1

1182 AAGGUAAUAUCCGAGUCGUUCCCUAGU

30 transposon

LTR

opus

1183 CAAGAUAUGACCAAAGCAAAGACUAA

3

2 transposon

DNA1184 UUUUCUCAUCGUCGUAGAACAAGCCCCGA

32 Su(Ste)

Su(Ste)1185 UGAGGAGGAUCCUCAA

3

1 coding geneCG3848-RC¦trr

1186 AUCUCAUCGUCGUAGAACAAGCCGA

3 no match

1187 UUCAUCGUCGUAGAACAAGCCCG

31188 AGGAUCCUCAACUGUGAGGGGAUCCUCAA

3 no match

1189 GGUCUCAUCGUCGUAGAACAAGCCCGA

31190 AAAACCUAGAAGAUGAUCCUGAGUC

3 no match

1191 AUAGAUCUUCACCGUUGACUUGCC

31192 UCUCAUCGCGUAGAACAAGCCCGA

3 no match

1193 UAGAUCUUCACCUUUGACUAGCCCCA

31194 CAGCACACAGAGGAGAGCAGAGAGAGCA

3 no match

1195 CCGAACGUACCACGGUGCUCCAGUGA

31196 UCGUCAUCGUACGUAGAACAAGCCCGGA

3 no match

1197 GAAUGUUGGCCCCAGAAUACGCAGG

3

0 no annotation

1198 ACCAAAGUCUCUGAUGGUUUGACAA

30 ncRNA

1199 UGCUGACGGGGCCCGAAAACACGAGA

30 transposon

1200 ACCGCCGACGGAGACACGAGCCCUG

3

0 coding gene

CG4792-RA¦Dcr-1

1201 UAGAUCUCCACCGUUGACUUGGCCC

31 Su(Ste)

Su(Ste)1202 UCGUCAUCGUCGUAGAACAAGCCCGGACUG

3 no match

1203 ACCUGAUGAAGAGGAGAUGCCCAGUGA

3

2 transposon1204 UUUCAUCGUCGUAGAACAAGCCCG

3

0 no annotation

1205 CGAAAUCCUCAACCGUGAGGGAUCCCUCAA

3 no match

1206 UUGAUAUGGCCAGCUACCACCUACU

30 Su(Ste)

1207 ACUGCAUUUGCGUCGAGGCCCAGG

3

0 transposon

1208 CAGCGCACAGAGGAGAGCAGAUGAGAGCA

3 no match

1209 GGUGCAUAUCAUUCACGCCAAGCUCCGA

30 Su(Ste)

Su(Ste)1210 UCUCAUCGUCGUAGAACAAGCCGGA

3

1 Su(Ste)

Su(Ste)1211 UUCUCAUCGUCGUAGAACGAGCCCGA

3

1 Su(Ste)

1212 CAGAUACCCGUUACUCAGCUAGUUG

30 transposon

1213 UCUCAUAGUCGUAGAACAAGCCCGAGG

3

1 Su(Ste)

1214 UGCGAGGAGGCCCGUAUUACUGUCA

3

0 transposon

LTR

ninja-Dsim-like1215 CAGACACAGAGGAGAGCAGAUGAGAA

3 no match

1216 UACUGACCCAGUCGGAUCUAUUGU

3

0 transposon

LINEbaggins

1217 UGAGGACUUGAGCGAUUUAAGUGGC

31 Su(Ste)

Su(Ste)1218 UCUCAUCAUCGUGGAACAAGCCCGA

3

1 Su(Ste)

Su(Ste)1219 UGGACUUUUUUCCGUAUGAGCCAGU

3 no match

1220 UUCGGCUUUCCGGCGAGAACUCGAGC

31221 CCUCAACUGUGAGGGAUCCUCAU

3 no match

1222 UCCGAGGAACCAGUUGAUCCAGCUG

31223 UCUCAUUCGUCGUAGAACAAGCCCGA

3 no match

1224 UCUCAUCGUCGUAGAACAAGCUCGAG

31225 CGAAACCAGGCCCAUCUGGUUGAACGUGU

3 no match

1226 UAGAUCUUCACCGUUGACUUGCCCCCA

30 Su(Ste)

1227 UGUUUGUAGGUGUACUGACCCAGUCGG

30 transposon

1228 AUCCUCAACUGUGGGGGAUCCUCAA

3 no match

1229 UUGAUGUCGGCUCAUCUCAUCCUGGGG

3 no match

1230 UCAACCGUCAAGAUCCACUGCCCAC

30 repeattrf

1231 UCUCAUCGUCGUAGAACAAGCCAGU

32 Su(Ste)

Su(Ste)1232 CUAACUGUGAGGGGAUCCUCAA

3 no match

1233 UGAUGACCGAAAUUUGGAAAACG

30 repeat

SAR̲DM

1234 UCUCAUCUUCGUAGAACAAGCCCGAA

3

1 Su(Ste)

1235 UCGUUACGUGCAUUGGCUCCGCUUGC

30 transposon

LTR

diver21236 GCCGAAUGUAGUCUCUCGAGAGCGA

3

1 transposon

LTR

invader1

1237 UAGAUCCUCACCGUUGACUAGCCCCA

3

1 Su(Ste)

Su(Ste)1238 AACCGAUAUGGUUGGACCACAAUC

30 ncRNA

7SLRNA-RA

1239 AUCGCCUGAGGAUGAGCCCGCGUU

3 no match

1240 ACCGAUUUAGAUGCUAAUCCCGAGGA

3

0 transposon

1241 CAAGAUAUGACCAAAACAAAGCAA

30 Su(Ste)

Su(Ste)1242 CAGCACACAGAGGAGAGCAGAUGAGAGCAA

3 no match

1243 UAACCGAAGAGCAUCCGUUGUUCAAA

3

1 coding gene

CG14017-RA¦CG14017

2 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)1360

0 no annotation
2 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)1 transposonLow̲complexity

F-element

pseudogene
LTR

LTR

opus

ninja-Dsim-like

Su(Ste)LINE

R1-element

Su(Ste)LINE

INE-1
Su(Ste)0 no annotation
1 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)Su(Ste)LINEbaggins

Su(Ste)LTR

opus

1244 UGUUUCAUCGUUAAACGGCUCGGGC

31245 CAGCACACAGAGGAGAGUAGAUGAGAGCA

3 no match

1 AT-chX

AT-chX-B

1246 UACUGUUUGUAGGUGUACUGACCCAG

3

0 transposon

1247 UGAUCUUCACCGUUGACUAGCCCC

31 Su(Ste)

1248 CCCCGUACUCUGUGGUGACCGACA

3

1 transposon

1249 UAGACCUUCACCGUUGACUAGCCC

31 Su(Ste)

1250 UCCUCCUGUGAGGGAUCCUCAA

3 no match

1251 UCCUCGGGAUCAAGGGCAACGAGU

30 coding gene1252 UGGACUUUUUUUCCGAUGAGCCAGUGA

3

2 transposon

LINE

G2

1253 UUUUCAUCGCUGGAGGACGCCCGGG

30 transposon

LINER1-element

1254 CCCGUACUCUGUGGUGACCGACACA

3

1 transposon

LINEbaggins

1255 UAGCGGCCGAGGAUCCGAUUUU

3 no match

1256 ACGGAGCGAUGUUCGGGCCCAGCU

31257 CAGCACACAGAGGGAGAGCAGAUGAGAGCA

3 no match

1258 UGUGACCGAGCGUGGGACCUCGAUAA

3

1 transposon

LINE

Cr1a

1259 AUAAAUGCCAGAAUUUUAUUGGGGUUC

30 transposon

LINEbaggins

1260 UAAAUGCCAGAAUUUUAUUGGGGUUCAG

3

0 transposon

LINEbaggins

1261 UAAAAGAAUCCUGACAAGAUCCCGG

3

2 transposon

LTR

invader1

1262 UUCCGGAGAGGGAGCCUGAGAAACG

30 ncRNArRNA

1263 UCUCAUCAUCGUAGAAGAAGCCCGA

3

1 Su(Ste)

Su(Ste)1264 UUCACCGUUGACUAGCCCCACACAU

3

0 Su(Ste)

Su(Ste)1265 UCUCAUCGUCGUAGAACAAGCACGA

3

1 Su(Ste)

Su(Ste)1266 UAGGUCUUCACCGUUGACUAGCCCCA

3

1 Su(Ste)

Su(Ste)1267 CAUAUCAUUCACGCCACGCUCCGACC

30 Su(Ste)

Su(Ste)1268 GGCCACUCCCGCCAACUGGACCCCUGG

3 no match

1269 GCACACAGAGGAGAGCAGAUGAAGCA

3 no match

1270 CCUCAACUGUGAGGGGAUCCUCAAC

3 no match

1271 CUCUCAUCGUCGUAGAAGAACGCCCGA

3 no match

1272 AGUCUCAUCGUCGUAGAACAAGCCCGA

32 Su(Ste)

Su(Ste)1273 UUCUCAUCGUCGUAGAACAAGCCCGG

3

1 Su(Ste)1274 UUCACGUCUGGCGAUUUUGACUCA

3

0 transposon

LTR

mdg3

1275 UGAAUACCUCGGGUACGUCUGCUCUC

30 transposon

LTR

GATE

1276 AAACCUGAAGAUGAUCCUGAGUCG

30 transposon

LINE

Helena1277 CGUAACUUCGGGAUAAGGAUUGGCUC

30 ncRNA

1278 UAGAUCUUUACCGUUGACUUGGCC

30 no annotation

1279 UCUCAUCGUCUAGAACAAGCCCG

3 no match

1280 ACCUCAUCGUCGUAGAACAAGCCCGA

32 Su(Ste)

1281 UCCUGUAGUACGAGGUCAUGCCUAG

3

0 transposon

1282 AUCCUCAACUGUGAGGGAAUCCUCAA

3 no match

1283 UCCUCAAUGUGAGGGAUCCUCAA

3 no match

1284 UCUCAUCCUCGUAGAACAAGCCCG

3

1 Su(Ste)

Su(Ste)1285 AGAUCUUCACCGUUGACUAGCCCC

30 Su(Ste)

Su(Ste)1286 UCUCAUCGUCGUACAACAAGCCCG

3

1 Su(Ste)

Su(Ste)1287 AUCCUCAACUGUGAGGGGGAUCCUCAA

3 no match

1288 UCGUCAGUCGUCGUAGAACAAGCCCGGA

3 no match

1289 UCUCAUCGUUGUAGAACAAGCCCGAGG

3

1 Su(Ste)

Su(Ste)1290 UGUUUCACCGUUGACUAGCCCCA

3 no match

1291 UCUGCCCGAUGACAAAAAUGGCCCGU

31292 GAAUCUCAUCGUCGUAGAACAAGCCCG

3 no match

1293 UACAGAGAAGAUUAGCAUGGCCCCUG

30 ncRNA

1294 UGAGGGGAUCCUCAA

3

1 no annotation

1295 GCCACACGCAUCCUAGAAUCGACCGACC

30 transposon

1296 UUCAAGUUUACCCCAGGAUGCUGU

3

1 repeattrf

1297 UGCUUCAUCGUUAGACGGCUCGGG

3

1 AT-chX

AT-chX-B

1298 UUCUCAUCGUCGUAGAACAAGCCCC

31 Su(Ste)

Su(Ste)1299 UUUCGCAUCGUCGUAGAACAAGCCCGA

30 Su(Ste)

Su(Ste)1300 UGUUUCAUCGUUAGCGGCUCGGGC

3 no match

1301 UCGUUUCAUCGUUAGACGGCUCGGGC

3

1 no annotation

1302 GAACUUGAGACCGCCCCUGGACAACC

3

0 Su(Ste)1303 ACCGGAGAAGACGUUGAAUGGAUCG

3

0 no annotation

1304 CACACACAGAGGAGACAGAUGAGAGCA

3 no match

1305 CAGGCCCAUCUGGUUGAACGUGU

30 Su(Ste)

Su(Ste)1306 UCUCAUCGUCGUAGAACAAGCCCCC

32 Su(Ste)

Su(Ste)1307 UCUCAUCGUCGCAGAAAGCCCGA

3 no match

1308 UUGAAUUUGGCCAGUAUUUCAUC

3

0 transposon1309 UUCAAGGUUACCCCAGGAUGCUGUGCC

30 repeattrf

1310 CAGGCCCAUCUGGUUGAACGUGUC

30 Su(Ste)

Su(Ste)1311 AGAAAUGUUUCAUCGUUAGACGGCUCGGGC

3 no match

1312 CAAAGCCUUUCAGACGUUUGACUCUC

30 transposon1313 UCUCAUCUUCAUAGAACAAGCCCG

32 Su(Ste)1314 UACAAUCUCCGAGCAAGACCCGAUC

3 no match

1315 UGCUUCAUCGUUAGACGGCUCGCGC

32 AT-chX

1316 UCCGUCGGGAUGAUUUGUACCGUA

30 transposonLow̲complexity

F-element

1317 UGGACCUUUUCCCGAUGAGCCAGUGG

30 transposon

LINE

G

1318 CAGCAUACAGAGGAGAGCAGAUGAGAGCA

3 no match

1319 GUAUAAGGUUGGCCCAAGAACGCU

30 transposonLow̲complexity

F-element

1320 AUCUCAUCGUCGUAGAACAAGCCCAA

32 Su(Ste)1321 AUCGUCUUCGGGAUGAACAGCACACAGAGGAGAGCAGAUGAGAGCA

3 no match

1322 UCUCAUCGUCGUAGAACAAGCCCGACUGUAAUCGGGUCAAU

3 no match

1323 AUGGUUGCAACGGGUAACGGGGAAU

30 ncRNA

1324 UCCUGUAGUACGAGGUCAUGCCUAGA

30 transposon

LTR

opus

1325 UCUAAUUCGGCCCGAACCCUUCUGG

3

0 transposon

LINEbaggins1326 GAGAAUCGCAUCUUAGAGUAAAUGGCC

30 transposon

LTR

gypsy8LINE

Su(Ste)LINEbaggins
Su(Ste)CG40635-RA¦CG40635

0 repeat0 transposon

bagginstrf

Su(Ste)rRNA

Su(Ste)
LTR

LTR

opus

mdg1
snRNA

LTR

flea

Su(Ste)

LTR

DNA

DM88

transib4
Su(Ste)AT-chX-B

Su(Ste)rRNA

1327 AUGGCUCUCUCAGUCGCUUCCCGGGA

31328 UGUUUCGAUCGUUAGACGGCUCGGGCCUG

3 no match

0 ncRNA

rRNA

1329 AUAGACCCGCUAGGAGAUGUUGAGAU

3

1 transposon

1330 UGGGAACACCGCGUGUUGUUGGCCC

3

1 ncRNA

5SrRNA

1331 CAGCCACAGAGGAGAGCAGAGAGAGCA

3 no match

1332 CUGUAACUCGGGAUAAGGAUUGGCUC

3 no match

1333 GGAUCCUCAACUGUGAGGGGAUCCUCGA

3 no match

1334 CAGCACACAGAGGAGAGCAGUGAGAGCA

3 no match

1335 UAAAUCUCAUCGUCGUAGAACAAGCCCG

3 no match

1336 UUAAUGCCUGAAGCGAUCCCACUGC

3

1 AT-chX

AT-chX-B

1337 GGAUCCUCAACUGUGAGGGGGAUCCUCAA

3 no match

1338 AUUCGGCUUUCUGACGAGAACUCGAGC

3

1 no annotation

1339 GCCGAACGUAGUCUCUCAAGAGCGAG

3

1 transposon

1340 GUUCGUAUCUCGCCGGGGCCUCCA

32 ncRNA

tRNA

1341 UUAAAUGCCGGAAGCGAUCCCACUGC

32 AT-chX

AT-chX-B

1342 UGGACCUUUCCCGAUGAGCCAGU

3 no match

1343 AAAAACCUGAAGAUGAUCCUGAGUCG

31344 GCACACAGAGGAGGGCAGAUGAGAGCA

3 no match

1345 UUCUGUUGAUGUGGGGGCCCCAAGU

31346 UGUUUCACCUUAGACGGCUCGGGC

3 no match

1347 ACUGCAUUCGCGUCGAGGCCCAGG
1348 UGUUUCAUCGUUAGACGACUCUGGC

LTR

LTR

roo

invader1

1 transposon

LINE

Helena0 transposon

LINE

G2

3

0 transposon

LINER1-element

3

2 AT-chX

1349 CUCUAGAGAGAGGUGGCUCCAGGCUC

30 transposon

DNA1350 UAAUCUUGAGAAGGAAGACCCCGGA

3

0 transposon

LTR

1351 UAGAUCUUCACCGUUGACUUGGCCCU

3

1 Su(Ste)

1352 CGAAAAUCCUCAACCGUGAGGGAUCCCUCAA

3 no match

1353 CGUUUCAUCGUCAGACGGCUCGGGC

32 AT-chX

1354 CCUGCUGACGGGGCCCGAAAACACGAGA

30 transposon

1355 UCGAUCUUCACCGUUGACUAGCCCC

31 Su(Ste)1356 GCCCGAUGAGAAGAAUGGCCCGUAAC

3

1 transposon

1357 AUCUCAUCGUCGUAGAACAAGCCCGGA

3

2 Su(Ste)

1358 CUCAACUGUGGGGGGAUCCUCAA

3 no match

1359 UACAAUCUCCGAGCAAGACCCCCGAUC

3 no match

1360 UGUUUCAUCGUUAGACGGCUCCGGGC

3 no match

1361 UCAACUGUGAGGGGAUCC

31362 UAGAUCUUCACCGUUGACUUCGGCCCA

3 no match

1363 UCUGAGGAACCAAGUGAUCCAGCUG

32 Su(Ste)1364 CCCUGAUGAAGAAGAGAUGCCCAGUG

30 transposon

1365 UCUUCACCGUUGACUAGCCCCACAC

30 Su(Ste)1366 UCAACUGUGUGGGGAUCCUCAA

3 no match

1367 UAUCUUCACCGUUGACUUGGCCCA

3

1 Su(Ste)1368 AAAACCUGAAGAUGAUCCUGAUUCGCA

3

1 transposon

LINE

Helena1369 AAGACGUGCAACUCUACGGCCCGG

30 transposon

LTR

ninja-Dsim-like

1370 GAUCCUCAACUGUGAGGAGAUCCUCAA

3 no match

1371 CCCGUACUCUGUGGUGACCAACACAC

3

0 transposon

LINEbaggins1372 CAAGAUAUGACCAAAGUAAAGACAC

3

0 transposon

DNA1373 UAACGACCAGACAUACGGCAUUAUCUG

3

1 transposon

LINER1-element

1374 CAGAUACCCGUUACUCAGCUAGUG

3

0 transposon

LINE

INE-1

1375 CAGCACACAGAGGAGAGCAGAUGAGAG

3 no match

1376 UGUACUGUUUCUAGGUGUACUGACCCA

3

1 transposon

LINEbaggins1377 UUUGUUGAUCAGUUUACACAUUAUUG

3

0 transposon

LINE

Cr1a

1378 UAAGCCCCGUACUCUGUGGUGACCAU

3

1 transposon

LINEbaggins1379 UCCUUGCAGGUUGCUGAUCGAUGACCA

3

0 transposon

LINE

Rt1b

1380 UAAAUGCCAGAAUUUUAUUGGGGUUCA

3

0 transposon

LINEbaggins

1381 CAGCACACAGAGGAGAGCUAGAUGAGAGCA

3 no match

1382 UCAAGGCCUUCUGGUGCAACCGAA

31383 AUCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAU

3 no match

1384 AUCCUAACUUGAGGGGUCCUCAA

3 no match

1385 UGCAUAUCAUUCACGCCACGCUGCGACC

31386 UCCUCAUCGUCGUAGAACAAGCCCCGA

3 no match

1387 AUCCUCAACUGUGAGGGGAUCCUCCAA

3 no match

1388 CUUCUCAUCGUCGUAGAACAAGCCCGA

3

1 Su(Ste)1389 UAAGCCCCGUACUCUGUGGUGACCAA

30 transposon

1390 UAGAUCUUCACCGUUGACUUGGC

30 Su(Ste)1391 UACACAAACAUGUUCCUAGACAGGCC

30 transposon

1392 CAACACACAGAGGAGAGCAGAUGAGAGCA

3 no match

1393 UAAUGCCAGUAAUUUUAGUGGGGU

3 no match

1394 UUAUACCCAGGUGAUUACCCUAU

3 no match

1395 AAACCGAUAUGGUUGGACCACAAUCUU

31396 AUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGGAACAAGCCCGA

3 no match

1397 UCAAGCCCGGGUAUUCUGAAGCCAAGA

3

0 repeat1398 AUAAUACCUCGAGUACGUCUGCUC

30 transposon

LTR

Rt1c

1399 UUAUGACUCAUAGACUCGUCUGGGAC

3

0 transposon

LTR

flea

1400 UCUCAUCGUCGUAGGACUAGCCCGA

3

1 Su(Ste)

Su(Ste)1401 UAGAUCUUCACCGUUGACUUGGUCCC

32 Su(Ste)

Su(Ste)1402 UGUUUCAUCGUUAGACGCCUCGGG

3

1 AT-chX

AT-chX-B

1403 ACCUCAACUGUGAGGGGAUCCUCAA

3 no match

1404 GCUGACGGGGCCCGAAAACACGAGA

30 transposon

1405 UCUAUCGAAGAAUCGCGGAUGUGACC

3

0 no annotation

1406 UCUCAUCGACGUAGAACAAGCCCG

3

1 Su(Ste)

1407 CUGAGACACGCAACAGGGGA

3 no match

1408 CCCCGCGGAAAGACGGAAAUACCCCAUG

3 no match

1409 AAAGAACCCGAUUCCUCUUCCAUGAG

3

AT-chX-B
1360
gypsy
Su(Ste)AT-chX-B
LTR

opus
Su(Ste)LINE

RR49783
Su(Ste)2 no annotation
Su(Ste)LTRninja-Dsim-like
Su(Ste)Su(Ste)0 Su(Ste)

1360

Su(Ste)0 no annotation

Su(Ste)LINE

Su(Ste)LTR

1 ncRNA

0 transposon

baggins
opus

7SLRNA-RA
trf

LTR

opus
Su(Ste)

LINE

Doc4

1410 UGACUGUUCCCGUUGAUUCCCGUUU

3

0 no annotation

1411 UCUCAUCGUCGUAGAAGAAGCCCGAGG

3

1 Su(Ste)1412 GUAUGACCCCUGGUACUGAAAUGC

30 transposon

1413 UCUCAUCGUCGGUAGAACAAGCCCGA

3 no match

1414 UCUCAUCGUCGUAGAACAAGCCCGAGC

3

1 Su(Ste)

Su(Ste)1415 AUCUCAUCGUCGUAGAACAAGCCCGAG

3

1 Su(Ste)

Su(Ste)1416 UCACACAGAGGAGAGCAGAUGAGAGCA

3 no match

1417 UCUCAUCGUCGUAGAACAAGCCCGUG

3

1 Su(Ste)

Su(Ste)1418 GAAGAUGUCCGGACAGCUGGGCCCGA

30 Su(Ste)

Su(Ste)1419 UGUUUUCAUCGUUAGACGGCUCGGGGC

3 no match

1420 UCUCGUCAUCGUAGAACAAGCCCGA

3

1 Su(Ste)

Su(Ste)1421 AUCGUCUCGGGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGG

3 no match

1422 UCCAACUGAAAGAGUACGAAUGAUC

3

0 transposon

1423 UUCUCAUCGUCGUAGAACAAUCCCGA

2

1 Su(Ste)

1424 UCUCCAACUGAAGGAGUACGAAUGAUC

2

0 transposon

LINER1-element

1425 GCCCGAAAACACGAGAGCCGAGCGC

20 transposon

LTR

opus

1426 UAGGAUCUUCACCGUUGACUUGCCCCCG

2 no match

1427 AGGCUGUGAGGGGAUCCUCAA

2 no match

1428 UAACAAGAUGCAUACGAUUUUUUCG

2

0 transposon

DNA1429 AUCUCAUCGUCGUAGAACGAGCCCGA22 Su(Ste)

Su(Ste)1430 AUCGCAUCGUCGUAGAACAAGCCCG

2

1 Su(Ste)

Su(Ste)1431 CGAAAUCUCAUCGUCGUAGAACUAAGCCCGA

2 no match

1432 UAGCUGGCCGAGUAUUUGAUGUU

2

0 Su(Ste)

1433 UAGUUGGGCCGCUGACGAAGUUGA

2

0 transposon

1434 CAAACUGUGAGGGGAGUCCUCAA

2 no match

1435 CGAAAUCCUCAUCGUCCGUUAGAACCAAGCCCCGA

2 no match

1436 GCACACAGAGGAGAGCAGAUGAGA

2 no match

1437 AUAGAUCUUCACCGUUGACUUGGCC

21 Su(Ste)

Su(Ste)1438 AAUUGAUCCAGCUGCUGUUGUUG

20 Su(Ste)

Su(Ste)1439 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUCGGG

2 no match

1440 CGUUGACCAAUUUCCGAACAUAGCC

22 transposon

1441 GGUGUCUCCCGGAGAGCAAUGACU

20 ncRNA

1442 CUCAACUGUGGGGGGGAUCCUCAA

2 no match

1443 GAUCUUCACCGUUGACUAGCCCCACA

2

0 Su(Ste)1444 GCCCGUACUCUGUGGUGACCAA

2

1 transposon

LINEbaggins

1445 AAAAAACCUGAAGAUGAUCCUGAGUCGC

2

2 transposon

LINE

Helena1446 UGUGAGGAUCCUCAA

2

1 coding gene

1447 UAGUAACUAUGACGAUUUGAUUC

2

0 transposon

1448 UUUCUCAUCGUCGUAGAACUAGCCCGA

2

0 Su(Ste)1449 GAGGAAAUCCCGGAUCGACAUGGC

20 transposon

1450 AUCUCAUCGUCGUAGAAUAAGCCCGA22 Su(Ste)1451 AUCUCAUCGUCGUAGAACAAGCCCCGACUGUAACUCGGUCAAU

2 no match

1452 GACUAGCUGGCCGAGGAUCCGAUUUUC

2

0 Su(Ste)1453 UUUGUAGGUGUACUGACCCAGUCGGA

2

0 transposon

LINEbaggins1454 CAUCUUCUUCUCGACGUUGACCAGCC

2

0 transposon

LTR

ninja-Dsim-like

1455 CUGAUACCGAGAAUGACAAUGGCUGA

2

0 transposon

LTR

gypsy31456 AUCCUUAACUGUGAGGGAUCCUCAA

2 no match

1457 GUUCAACUGGACGGGCCUAGAGUUA

21458 UCCGAACGUACCACGGUGCCCCCAG

2 no match

1459 UCUUCAUCGUCGUAGAACAAGCCCGA

2

1 no annotation

1460 UGCUCUCGAAUGUAUGCCCGAUC

2

1 transposon

LINER1-element

1461 AUCAGAUACCCGUUACUCAGCUAG

2

0 transposon

LINE

INE-1

1462 UCUCAUCGUCGUCGAACAAGCCCGA

2

1 Su(Ste)

1463 AUCCUCAACUGUGAGGGUCCUCAA

2 no match

1464 CAAGAUAUGACCAAAGCAAAGCAACG

2

0 Su(Ste)

1465 GAUAUCCUGAGCAAGUGAUCUGACC

2

0 transposon

DNA

S

1466 GAUCCUCAACUGUGAGGGAUUCUCAA

2 no match

1467 UUAGUUGACGUAGAGACUGAUACAU

2

0 transposon

LINE

Circe

1468 UCCGGGGGAAGUAUGGUUGCAAAG

2

0 ncRNA

1469 UGUAUGUCCCAGUUGCAUUGCAUA

20 transposon

1470 UCUCAUCUUUGUAGAACAAGCCCGA22 Su(Ste)

Su(Ste)1471 CUGUGAACGAGUGAACUGGCAACAA

2

0 Su(Ste)

Su(Ste)1472 CAGCACACACGAGGAGAGCAGAUGACGACA

2 no match

1473 UCCUCAACUGUGAGGGAUCCCCAA

2 no match

1474 AUCUCAUCGUCGUAGAACAAGCCCCGACUGUAACUCGGGGUCAAU

2 no match

1475 AGAAAAAAACCUGAAGAUGAUCCUGAGUCGC

2 no match

1476 GCGAAAAUUGGCCCAAACUGAU

2

0 repeat

SAR̲DM

1477 UGUUUCAUCGUUAGGGCUCGGGC

2 no match

1478 AGAUCAACUGUGAGGGGAUCCUCAA

2 no match

1479 AAAGGAAUUGACGGAAGGGCACCACC

2

0 ncRNA

rRNA

1480 UAGAUCUUCACCGUUGACUUGGCCAA

2

1 Su(Ste)

Su(Ste)1481 UCUCAUCGUCGUAGAACUAGCCCAA

2

1 Su(Ste)

Su(Ste)1482 CUUGAGACCGCCCCUGGACGACCCACG

2

0 Su(Ste)

Su(Ste)1483 UGUUUCAUAGUUAGACGGCUCGGCC

22 AT-chX

AT-chX-B

1484 GUGACGAAGCCUAGA

2

1 no annotation

1485 UAGAUCUUCACCGUUGACUAGCCUCA

2

1 Su(Ste)

Su(Ste)1486 AUCUCAUCGUCGUAGAACAAAGCCCCGA

2 no match

1487 GAUUCACCGUUGACUUGGCCCACACA

22 Su(Ste)

Su(Ste)1488 CCAGGCCCAUCUGGUUGAACGUGUC

20 Su(Ste)

Su(Ste)1489 CAGCACACAGAGAGAGCAGAUGAGAGCA

2 no match

1490 CUGACCCAGUCGGAUCUAUUGUAC

2

0 transposon

1491 UCUCAUCGUCGUAGAACAAGCCCGGAG

2

1 Su(Ste)

Su(Ste)1492 UGGACCGAACACUUUGAACCAAGU

2

0 Su(Ste)

Su(Ste)Su(Ste)
DNA

LINE

Bari1

R1-element
Su(Ste)1360

Su(Ste)
LINE

LTR

Doc

DM88
pseudogene
Su(Ste)CG5146-RA¦CG5146
LTR

flea
Su(Ste)LINE

X
Su(Ste)Su(Ste)1 coding gene

CG40635-RA¦CG40635

Su(Ste)Su(Ste)

rRNA
DNA

LINE

RR51476

baggins

1493 CGACACAGAGGAGAGCAGAUGAGAGCA

2 no match

1494 UCGCCCAGAGCGGUUUCCCUGUGUUUA

2

1 no annotation

1495 UAAUGUCCCUUAAAUCAGCACUCGUA

2

0 no annotation

1496 UUAAAUGCCGGAAGCGAUCCCACUGCU

22 coding gene

CG41580-RA¦CG41580

1497 UUCGUCAUCGUCGUAGAACAAGCCCGA22 Su(Ste)

Su(Ste)1498 GACUGCAGAUCGAGAGGUCCCCGG

20 ncRNA

1499 UAAUGGUAUCCGAGUCGUACUCUAG

2

0 transposon

LTR

springer

1500 GGACAGACGUUUUUCUUCCUCCAGUG

2

0 transposon

LINEbaggins1501 CUUCGGGAUAAGGAUUGGCUCUGA

2

0 ncRNA

1502 CGAAACUCAACUGUGAGGGGAUCCCUCAA

2 no match

1503 UCUGACGAGAACUCGAGCCGCGUAA

21504 UUCUCAUCGUCGUAGAACAACGCCCGA

2 no match

1505 UAAACAAGAUGCAUACGAUGUGGCU

22 transposon

1506 GUCCGGGAGAAAACAAUGAUGGCCA

20 coding gene

CG12717-RA¦CG12717

1507 AACGAACCAGCCCGAGGAAAUCAAUCUC

2 no match

1508 GACUAGCUGGCCGAGUAUUUGAUGU

2

0 Su(Ste)

Su(Ste)1509 UCCUCAACUGUGAGCGAUCCUAA

2 no match

1510 AAAUGCCAGAACUUUAUUGGGGU

21511 GUGGAAGAAAGUACAAUCCUCAA

2 no match

1512 AUUGCGCCCCUUGGUAUUCCAG

2 no match

1513 AUUCUCAUCGUCGUAGAACAAGCCCCGA

2 no match

1514 CAGCACACAGAGGAGGGCAGAUGAGAGCA

2 no match

1515 CCCUGACCUAGAUGACUGCAGAACC

21516 AAUUUCGUAAACCAAAGGCCGUGAGUU

2 no match

1517 CUCGAAGAUGACGGAGAAGUGCUU

21518 UACGAUCUUCACCGUUGACUAGCCCCCA

2 no match

1519 UAUCGUCUUCAUUGCGACGGCGAC
1520 UCAAGGCCUUCUGGUGCAACCGAGA

tRNA

rRNA

1 no annotation
DNA

1360

0 transposon

LINEbaggins

0 transposon

LINE

TART-A0 coding gene

CG11611-RA¦Tim13

2

0 AT-chX

AT-chX-A

2

0 Su(Ste)

Su(Ste)1521 UCUCAUCGUCCUAGAACAAGCCCG

2

1 Su(Ste)

Su(Ste)1522 GGAUCCUCAACUGUGAGUGGAUCCUCAA

2 no match

1523 ACUCCCCAUCCUGCACUCUCC

2 no match

1524 CACCACAGAGGAGAGCAGAUGAGAGCA

2 no match

1525 UCUCAUCGUCGUAGAAUAGCCCGA

2 no match

1526 UAGAUUUUCACCGUUGACUAGCCCCA

2

1 Su(Ste)

Su(Ste)1527 UCCGGGAGAAAACAAUGAUGGCCAAG

2

0 coding gene

1528 UACAAUGAUCUGAUCGGGUUUUCU

22 transposon

LINE

Cr1a

1529 UUUAUACCUGAGCCAGUUUGUUUUUG

22 transposonLow̲complexity

F-element

1530 UCUCAUCGUCGUAGAACAAGCCCAG

2

2 Su(Ste)

1531 UGCUGAACGUAGUCUCUCGAGAGCGA

2

1 transposon

LTR

invader1

1532 UCUCAUCGUCGUAAGAACAAGCCCGA

2 no match

1533 UGGAAUAGUUUUGACCGUUGACCA

2

0 transposon

LTR

opus

1534 CACACAGAGGAGAGGAGAUGAGAGCA

2 no match

1535 UCCAGUGACUUUAGUAUGCCCCGUAC

2

0 transposon

LINEbaggins1536 UAAAUUAUAAGGAUGAUGAUACCGAU

2

1 no annotation

1537 UGUCUUCAUCACUACGGGCCCAG

2

0 transposonLow̲complexity

F-element

1538 GGAUCCUUAACUGUGAGGGGAUCCUCAA

2 no match

1539 AUUCAUCGUCGUAGAACAAGCCCG

2

1 no annotation

1540 AUCUCAUCGUCGUAGAACAAUCCCGA22 Su(Ste)

Su(Ste)1541 CUCAUCGUCGUAGAAGAAGCCCGAG

2

1 Su(Ste)

Su(Ste)1542 AUAGAUCUUCACCGUUGACUAGCCC

2

1 Su(Ste)

Su(Ste)1543 CUGAGACACGCAACAGGGGAUAGGCAAGGCA

2 no match

1544 CCAGGCCCAUCUGGUUGAACGUGU

20 Su(Ste)

Su(Ste)1545 AUUUCUCAUCGUCGUAGAACAAGCCCGA

2

1 Su(Ste)

Su(Ste)1546 UCUCAUCAUUCGUAGAACAAGCCCGA

2 no match

1547 UCUCAUCGUCGUAGAACAACCCGA

2 no match

1548 GAUCUUCACCGUUGACUAGCCCC

20 Su(Ste)

Su(Ste)1549 CAGACACAGAGGAGAGCAGUUGAGAGCA

2 no match

1550 UACUCGAAGACACCACGGUGAAAGUG

21551 AUCCUCAACUGUGAGGGAUCCUCA

2 no match

1552 UAGAUCUUCACCGGUUGACUAGCCCCA

2 no match

1553 AGGUGUUUCAUCGUUAGACGGCUCGGGC

2 no match

1554 UAAAUGCCAGAUUUAUGGGGUUC

2 no match

1555 GAUUCCGCAGUGCGUUGAUAUGGCCAG

21556 UAGGAUCUUCACCGUUGACUUGGCCCGA

2 no match

1557 UAGAUCUUCACCGUUGACUACGCCCC

2 no match

1558 UAGAUCUUCACCGUUGACUAGCACCA

2

1 Su(Ste)

1559 UAAAUGCCAGAAUUUUAUUGGGGUUA

2

1 transposon

1560 AAUCUCAUCGUCGUAGAAGAAGCCCGA

2 no match

1561 GCACACAGAGGAGAGCAGAUGAGAA

2 no match

1562 UCUCCAUCGUCGUAGAACAAGCCCGA

21563 AUCCUCAACUGUGAGGUGAUCCUCAA

2 no match

1564 GCUGGCCGAGGAUCCGAUUUUCUUUG

2

0 Su(Ste)

1565 GCAAUAAGACCCCAUUAGCAGCCC

2

1 no annotation

1566 UCUCAUCGUCGUAGAACUAGCCCGACUGUAACUCGGGGUCAAU

2 no match

1567 CAGCACACAGAGGAGGAGCAGAUGAGAGCA

2 no match

1568 AUCUCAUCGUUGUAGAACAAGCCCGA

21569 UCGUCUCGGUGAAAGGAUCCUCAA

2 no match

1570 GACAGAAUAGAGAGGGAUCCUCAA

2 no match

1571 AUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGAACAAGCCCGA

2 no match

1572 CUGUAACUCGGGGUCCGAAGG

2 no match

1573 UAGCUGGCCGAGUAUUUGAUAUU

21574 CUGUUUCAUCGUUAGACGGCUCCGGGCG

2 no match

1575 CAAGAUAUGACCAAAGUAAAGACUA

20 transposon

CG12717-RA¦CG12717

Su(Ste)LTR

0 Su(Ste)ninja-Dsim-like

Su(Ste)Su(Ste)LINEbaggins

2 no annotation
Su(Ste)2 Su(Ste)

Su(Ste)0 Su(Ste)

Su(Ste)2 transposon

DNA

1360

1576 UCGAAUCAACAAAUUGCGCCGAUAU

2

0 coding gene

1577 UCUCAUCGUCGUAGAACUAGCCCGAA

2

1 Su(Ste)CG41545-RA¦CG41545

1578 UCCAAAGCGGGACCUCUUAGGCAAG

2

0 transposon

1579 GGAUUAGAUACCCUGGUAGUCCACGC

2 no match

1580 AAUGUUUCAUCGUUAGACGGCUCGGGC

22 AT-chX

1581 CUUGGACGGACAGGUUACACGAUC

2

0 transposon

1582 AAUUCCGGAGAGGGAGCCUGAGAAACGG

2

1 ncRNA

1583 UGUACUGACCCAGUCGGAUCUAUAAA

2 no match

1584 GGCAUUCCGAAUUAAUGUUGGCCAA

2

1585 UCGUCAUCGUCGUAGAACAAGCCCGGCUG

2 no match

1586 UACAGUAUUGGUCCAAGAACGCUGCC
1587 UUACAAUCUCCGAGCACGACCCCGA
1588 UCUCAUCGUCGAGAAGUAGCCCGA

2 no match

1589 UCUCAUCGUCGUAGAACAAGCCCCGUA

2 no match

1590 UACACAAACGUCCCUGACCCAACCUGA

2

0 coding gene

1591 UAAAGAAUCCUGACAAGAUCCCGCG

2

1 transposon

LTR

invader1

1592 UGUACUGGAUGCCACUCCUGGUGU

22 transposon

LINE

G2

1593 UGUUUCAUCGUUAGACGGCUCGAA

2

2 AT-chX

AT-chX-B

1594 UCUCAUCGUCGUAGAACAAGCCCGAGCUGUAACGUCGGGUCAAU

2 no match

1595 ACUGCAGAUCGAGAGGUCCCCGGU

20 ncRNAtRNA

1596 CCUCAACGUGAGGGGAUCCUCAA

2 no match

1597 UUUCUGACGAGAACUCGAGCCGCGUA

21598 UCUCAUCAUCGUAGAACGAGCCCCGA

2 no match

1599 UCCCCGCCGAGGUACGAUUCCUGCACC

21600 UCUCAUCGUCGUAGAACUACGCCCGA

2 no match

1601 UUUCUGACGAGAACUCGAGCCGCG

2

0 no annotation

1602 UCUCAUCGUCGUAGAACAAGCCCCGU

22 Su(Ste)

1603 UCCGCAUGUGAAUGUUGGCCCCAG

2

0 no annotation

1604 CGACAGAAUAGAGAGGGAUCCUCAA

2 no match

1605 CGAGCACACAGAGGAGAGCAGAUGAGAGCA

2 no match

1606 UGGAUUUUUUUUCCGUAUGAGCCAGUG

2 no match

1607 AACUCUAGGCUGAGCGGAGAACCAGAG

2 no match

1608 AGGGGCGAAGGCGGCUGUCUGGU

2 no match

1609 UGCAGACGUGCCUACGGACCGACG

2

0 transposon

1610 UCUCAUCGUCGUAGAACAAGCACGAA

2

1 Su(Ste)

Su(Ste)1611 GAUAUGACCAGCAUGGACCUAACACU

2

0 Su(Ste)

Su(Ste)1612 UCUCAUCGUCGUAGAAGAAGCCCGU

22 Su(Ste)

1613 UGAUACCAAGAAUGACAAUGGUUGA

2

1 transposon

1614 UCUAAUCGUCUUAGAACAAGCCCGA22 Su(Ste)

1615 AUGUGAGGGGAUCCUCAA

2

2 no annotation

1616 AUCUCAUCGUCGUAGAACAAUCCCCGA

2 no match

1617 AUCUCAUCGUCGUAGAACAAGCCUGA

22 Su(Ste)

Su(Ste)1618 UCUCAUCGUCAUAGAACAAGCCCG

2

1 Su(Ste)

Su(Ste)1619 AUCUCAUCGUCGUAGAACAAGCCCGCUGUA

2 no match

1620 GCUCCGAACUCUCUUGGCCCAAGAC

2

0 coding gene

CG11306-RA¦CG11306

1621 AACUAGUGAGGGGAUCCUCAA

2 no match

1622 UGUUUUCAUCGUUAGACGGCUCGGGU

2 no match

1623 UGGGAACACCGCGUGUUGUUGGCCU

20 ncRNA

5SrRNA

1624 UCUCAUCGUCGUAGAAGUAAGCCCGA

2 no match

1625 UGUUACAAUGAUCUGAUCGGGUCAAU

2 no match

1626 CCUCUACUGACUUCAGUAAGCCCCG

2

0 transposon

LINE

1627 UAAACAAGAUGCAUACGAUGUGGCUC

22 transposon

DNA

1628 GGAUCAACUGUGAGGGAUCCUCAA

2 no match

1629 UGUUACAAUGAUCUGAUCGGGUU

20 transposon

LINE

Cr1a

1630 CAAACUGUGAGGGGAUCCUCAA

2 no match

1631 UCGCAUCGUCGUAGAACAAGCCCGCUGUAACUCGGGGUCAAU

2 no match

1632 UCCUCAACUGUGAGGGGGAUCCUCAA

2 no match

1633 UUACAAUCUCCGAGCAAGACCCCGA

2

0 transposon

LINE

Circe

1634 UCCGUAGGGAUGAUUUGUACCGUAGA

2

0 transposon

LINE

F

1635 UAGAUCUUCACCGUUGACUAGCCCCAG

2

1 Su(Ste)

1636 UCCGAUCUCCUGAGUCGGACUCCGAGU

2

1 transposon

1637 GCAUCCUAGCUGGCGGGACCGACA

2

0 coding gene

CG1638-RB¦CG1638

1638 AAUCCUCAACUGGAG

2

1 coding gene

CG14512-RA¦CG14512

1639 UCUCAUCGUCGUAGAACAACGCCC

2 no match

1640 AGAUUCUUGAGAAUUUGGACGCCGUU

2

0 transposon

1641 UCUCAUCGUCGUAGAACAAGCCCGGGG

2

1 Su(Ste)

Su(Ste)1642 UGUAUCAUCGUUAGACGGCUCGGGC

2

1 AT-chX

AT-chX-B

1643 UAGCAUCGUCGUAGAACAACGCCCGA

2 no match

1644 UUACAAUGAUCUGAUCGGGUUUUUCU

21645 AGGAGCCUCAACUGUGAGGGGAUCCUCAA

2 no match

1646 UUCGUCAUCGUCGUAGAACAAGCCCG

22 Su(Ste)

Su(Ste)1647 CAAUUGAUCCAGCUGCUGUUGUUG

20 Su(Ste)

Su(Ste)1648 UAGAUCUUCACCGUUACUUGGCCC

2 no match

1649 UGUUUCAUCGUUAGACGCUCGGG

2 no match

1650 AAUCUCAACUGUGAGGGAUCCUCAA

2 no match

1651 UGGACUUUUUUCCGUAUGAGCCAGUG

2 no match

1652 UAGGACCUGGGUUUGUCAACGGACAACUG

2 no match

1653 CAGCACACAGAGGAGAGCAGAUGAGAGCG

2 no match

1654 UAACGACCAGACAUACGCCAUAAUCUC

2

1 transposon

LINE

R1

1655 UAAAAUGCCAGAACUUUAUUGGGGU

22 transposon

LINEbaggins

1656 UGAUCUUCACCGUUGACUAGCC

2

1 Su(Ste)1657 CCCGUACUCUGUGGUGACCAAC

2

0 transposon

1658 CACACACAGAGGAGAGCAGAUAGAGCA

2 no match

Su(Ste)LINE

G3AT-chX-B

LTR

297
rRNA

0 transposon

LINE

Rt1b

2

0 transposon

LINE

G

2

0 transposon

LINE

Circe

CG15669-RC¦MESK2

0 no annotation
1 transposon

0 transposon

LINER1-element

Su(Ste)LINE

G

Su(Ste)LTR

gypsy3
Su(Ste)baggins1360

Su(Ste)
LINE

LINE

LINE

R1

Cr1a

Cr1a

Su(Ste)LINEbaggins

1659 UCCUAGUAUUCUUCCGGAUGAUCCACC

21660 CCGAACGUACCACGGUGCCCAGUGA

2 no match

0 transposon

DNA

S

1661 CUGUGAGGGGGAUCCUCAA

2

2 no annotation

1662 GACUAGCUAGCCGAGGAUCCGAUU

2

1 Su(Ste)

Su(Ste)1663 UUCACUCGUUCACAGAAAUAUGACU

2

0 Su(Ste)

Su(Ste)1664 UCUCAUCGUCGUAGAACAAGCCCUC

22 Su(Ste)

1665 GCGUUGACCAAUUUCCGAACAUACGA

2

1 transposon

LTR

Dm88

1666 GCCCGAUGAGAAGAAUGGCCCGUAA

2

0 transposon

LINE

RR497831667 AGAAAAAAAAAAAAAAGGAUCCUCAA

2 no match

1668 UAACAAGAUGCAUACGAUGUGGCUU

2

1 transposon

DNA

1669 UCUCAUCGUCGUGGAAGAAGCCCGA22 Su(Ste)

1670 UGUUUCAUCGUUAGACGGCUCGGGCCUGG

2 no match

1671 UCUCAUCAUCGUAGAACAACGCCCGA

2 no match

1672 UGCUCUCGAAUGUAUGCCCGAUAUAC

2

0 transposon

LINE

1673 UAAACAAGAUGCAUACGAUGUGGCUCC

22 transposon

DNA

1674 ACCUCAACUGUGAGGGAUCCUCAA

2 no match

1675 UCCAGGCCCAUCUGGUUGAACGUGUC

20 Su(Ste)

1676 UCGAGAAGCGUUUGAUCGAGUGUGG

20 transposon

1677 UCUCAUCGUCUAGAACUAGCCCGA

2 no match

1678 CUCAUCGUCGUAGAACAAGCCCGAG

21679 AUCUCGUCGUCGUAGAACAAGCCCCGA

2 no match

1680 AUCGUCUCGGGGAUGAAAUGUUUUCAUCGUUAGACGGCUCGGGC

2 no match

1681 CUCAACUGAGGGGAUCCUCAA

2 no match

1682 GUAACUUCGGGAUAAGGAUUGGCUCUG

21683 AUCGUCUCGGGACUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

2 no match

1684 UGUACACACCGCCCGUCGCUACUACCG
1685 UUUUCAUCGUCGUAGAACAAGCCCGA

Su(Ste)1360
Su(Ste)R1-element
1360
Su(Ste)LINE

BS3

0 Su(Ste)

Su(Ste)0 ncRNArRNA

20 ncRNArRNA

2

0 no annotation

1686 GCAGCUCUUCCGUGGCGACACCGUGA

2

0 coding gene

CG2331-RA¦TER94

1687 UCACGCGGGAGACCGGGGUUCAAUUU

2

1 ncRNAtRNA

1688 UUGUUUCAUCGUUAGACGGCUCGGGC

20 no annotation

1689 GUGUUUCAUCGUUAGACGGCUCGGGGC

2 no match

1690 UAGUUUUCAUCGUUAGACGGCUCGGGC

2 no match

1691 AUCCAACUGUGAGGGGAUCCUCAA

2 no match

1692 ACUGCAUUUGCGUCGAGGCCCAGGA

21693 CAAGGAUAUGACCAAAGCAAAGACGA

2 no match

1694 GAUGUCCGGACAGCUGGGCCCGAA

21695 CUCAACUGUGAGGGAAUCCUCAA

2 no match

1696 UCCAAGACCCCAAGGACAUUGUCGAU

2

0 coding gene

1697 CGUUGAGCAAUUUCCGAACAUACGCC

2

1 transposon

LTR

DM88

1698 UACAGAGUUUUGCUCGGCUCGAAGU

2

0 transposon

LTR

rover

1699 UAAGAUUGGACCCAGUACACUGCCC

2

1 transposon

LINE

Doc

1700 UCUCAUCGUCAUAGAACAAGCCCCC

2 no match

1701 UCUCAUCGUCGUACGAACAAGCCCGA

2 no match

1702 UAGGUUGUACCCCUACAGCAUGAA

2

0 transposon

LTR

opus

1703 UUCAUCGUCGUAGAACAAGCCCGAC

2

1 no annotation

1704 ACUUCAGAGUCGACGUACCCGUU

2

1 transposon

LTR

G4

1705 UGUUUCAUCGUAGACGGCUCGGGC

2 no match

1706 GGCCUCAACUGUGAGGGAUCCUCAA

2 no match

1707 UACAAUACCCAGUUACUCGUGCCAU

21708 AUCUCGUCGUCGUAGAACAAAGCCCCGA

2 no match

1709 CAGACAGAGGAGAGCAGAUGAGAGA

2 no match

1710 UCUCAUCUUCGUAGAACAACGCCCGA

2 no match

1711 CAACCAGAGAUCUAGAGGGCCCAAG

2

0 no annotation

1712 UCGGACACCGAACCGGGAAGGCGAA

2

0 transposon

LTR

Tirant1713 AAACAGCACACAGAGGAGAGCAGAUGAGAGCA

2 no match

1714 ACAAGAUAUGACCAAAGCAAAUACAC

2

1 transposon

DNA

1715 GGAUACCUCAACUGUGAGGGGAUCCUCAA

2 no match

1716 UCCGGAGUGUUGAUCUGAGCCUCAAA

2

0 transposon

LTR

1717 CCUCAACUGUGAGGUCAA

2

1 no annotation

1718 UCUCAUCGUCGUACAACAAGCCCGA

2

1 Su(Ste)

Su(Ste)1719 UGUCUCAUCGUUAUACGGCUCGGGC

22 AT-chX

AT-chX-B

1720 UCGUAUCGUCGUAGAACAAGCCCGCG

22 Su(Ste)

1721 UCUCACUCGACUGCGACACCAUCCC

2

1 transposon

1722 UCAACUGUGAGGAGGAUCCUCAA

2 no match

1723 CAGCACACAGAGGUGAGCAGAUGAGAGCA

2 no match

1724 UGUUUCAUCGUUACACGGCUCGGG

2

1 AT-chX

1725 UCAUCUUCUUCUCGACGUUGACCG

2

1 transposon

1726 UUCUCAUCGACGUAGAACAAGCCCGA

2

1 Su(Ste)

1727 CUCAACUGUGAGGGGGAGUCCUCAA

2 no match

1728 UUCUCAUCGUCGUAGAACAAGCCCA

2

1 Su(Ste)

1729 UAAAAGAAUCCUGACAAGAUCCCGGG

2

2 transposon

LTR

invader11730 AGCCCCCGUACUCUGUGGUGACCAACA

2

1 transposon

LINEbaggins1731 GAGAGGCGCCGUAGUUACCACCCCACC

2

0 no annotation

1732 UGGACUCUUUUCCGAUGAGCCAGU

2

1 transposon

LINE

G2

1733 GCUGGCCGAGGAUCCGAUUUUCUUU

2

0 Su(Ste)1734 UCUCAUCGUCGUAGAACAAGCCCCAGAAAGUAAACA

2 no match

1735 AUCCUCAACUGUGAGGGAUCCCCAA

2 no match

1736 UUUUUUCAUCGUUAGACGGCUCGGGC

2

1 no annotation

1737 CUGUGAGGAUCCUCAA

2

1 no annotation

1738 UCCGAUCUCCUGAGUCGAACUCCGACC

2

1 transposon

1739 UUAAUGCUGGAAGCGAUCCCACUGCC

2

1 AT-chX

1740 UUCGAUCUCCUGAGUCGGACUCCGAGC

2

1 transposon

1741 AUCGUCUCGGGAGUGAAAAUACUCUAUCGUCGUAGAACAAGCCCGA

2 no match

0 transposonLINE

0 Su(Ste)

R1-element
Su(Ste)CG4536-RA¦iav

0 no annotation

1360
GATE

Su(Ste)LINE

G2AT-chX-B
LTR

ninja-Dsim-like
Su(Ste)Su(Ste)Su(Ste)LINE

R1-element
AT-chX-B

LINE

R1

1742 UGCUAGGAGGCCCGUAUUACUGUC

21743 UGUUCAUCGUUAGACGGCGUCGGGC

2 no match

1 transposon

LTR

ninja-Dsim-like

1744 UAAAUGCCAGAAUUUAUUGGGGUUC

2 no match

1745 ACUUGACAUCGCCCCUGGACGACCCACG

2

0 repeat1746 UGCGUGACGGGACCCAGAUAGCCUC

20 transposon

1747 CCAUCAGAGACUUUGGUGGCCAACAAA

2

1 coding gene

1748 AUUCUUCUCGACGUUGACCAGCCUCC

2

1 transposon

1749 UAAGGAUUGGACCCAGUACACUGCCGU

2 no match

1750 CCGGAGAAGACUUUGAAUGGAUCG

21751 UUCUCAUCGUCGUGAACAAGCCCAA

2 no match

1752 UGUUUCAUCGUUAGAACGGCUCGGGC

2 no match

1753 UCUCAUCGUCGUAGAACAACCCGAA

2 no match

1754 UUUCUCACCGUCGUAGAACAAGCCCGA

2

1 Su(Ste)

Su(Ste)1755 GGAUCCUCAACUGUGAGGG

22 coding gene

CG34138-RA¦CG34138

1756 CGAAAUCCUCAUCGUCCGUUAGAACCAAGCCCCGACU

2 no match

1757 UCUCAUCGUCGUAGUAGAAGCCCG

22 Su(Ste)

Su(Ste)1758 UCUCAUCGUCGUAGAACAACGUCCGA

2 no match

1759 UCUUCACCGUUGACUAGCCCCACA

2

0 Su(Ste)

1760 CAGAUACCCGUUACUCAGCUAGUAUAA

2

0 transposon

1761 UUUUUCAUCGUUAGACGGCUCGGG

2

1 AT-chX

1762 UGUUUCAUCUUAGACGGCUCGGG

2 no match

1763 UGAUGACCGAAAUUCGGAAAAACG

20 repeat1764 UCCAGAGCAAGUGAUCUGACCGAGAU

2

0 transposon

LTR

Max

1765 UUCACCGGGUUUUGGCACUUUGCCGC

20 transposon

LINER1-element

1766 UAGAUCUUCACCGUGGACUAGCCCC

21 Su(Ste)

1767 CUCAACUGUGAGGGUAUCCUCAA

2 no match

1768 CAGCACACAGAGGAGAGCCAGAUGAGAGCA

2 no match

1769 UCCGAUCUCCUGAGUCGGACUCCGAU

2

1 transposon

LINE

R1

1770 AAAACCUGAAGAUGAUCCUGGGUCGC

2

1 transposon

LINE

Helena1771 GGACUUCCGAGAAAGCCCGCAGAA

2

0 transposon

LTR

flea

1772 UCACGCCAGUCCCAUCAGGUCGCCCA

2 no match

1773 GUCUCAUCGUCGUAGAACAAGCCCGUCUGUAACCUCGGGUCAAU

2 no match

1774 CAAGGAUAUGACCAAAGCAAAGACGAC

2 no match

1775 UUCCCGUGUGUCAUUAAGGUCUUGAACC

2

0 transposon

LINEbaggins

1776 CAUCACACAGAGGAGAGCAGAUGGGAGCA

2 no match

1777 UGGACGGAGCGAUGUUCGGGCCCA

21778 UACGAUCUUCACCGUUGACUAGCCCCA

2 no match

1779 AACCUAGUUACUUACGGGCUCGACA

2

0 Su(Ste)

1780 UCCAGUCUCCCGACUAUCAGAUACCCGU

2

0 transposon

1781 AUUUUCAUCGUCGUAGAACAAGCCCGA

2

1 no annotation

1782 UUAUUCCCAAUGCUUUGCGACGGCGCA

2 no match

1783 AUCGUCUCGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGGA

2 no match

1784 UCGACUACAUUCAGGACCCGCUCAACC

2

1 coding gene

CG40635-RA¦CG40635

1785 GACUAGCUGGCCGAGUAUUUGAAA

2

1 Su(Ste)

Su(Ste)1786 AGAAAAAAAAAAAAAGGAUCCUCAA

2 no match

1787 AUGUUAAGGACGAGAAUCUACCCC

2

0 transposon

1788 UAUACCCAGGUGAUUACCACUAUUA

2

0 Su(Ste)

Su(Ste)1789 UCAACGAAGACCCAGUAUACCGUA

2 no match

1790 AUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCG

2 no match

1791 UACAUCUUCACCGUUGACUAGCCCCA

2

1 Su(Ste)

Su(Ste)1792 UCCUGAUGACUCUUCGACAUGUAC

2

0 no annotation

1793 UUAAUGCCGGAAGCGAUCCCA

2

0 AT-chX

1794 GCACACAGAGGAGAGCAGAUGAGAGUA

2 no match

1795 AGUUCCUGACUUUAUGCCCCAGUUU

20 transposon

1796 AGAUCUUCACCGUUGACUUGCCCAAA

22 Su(Ste)

Su(Ste)1797 UCUCAUCGACGUAGAACAAGCCCGAA

2

1 Su(Ste)

Su(Ste)1798 UCUCAUCGUCGCUGAACAAGCCCGA22 Su(Ste)

Su(Ste)1799 AUACAAUCUCCGAGCAAGACCCCCGAUC

2 no match

1800 CUCAUCGUCGUAGAAGAAGCCCGA

2

1 Su(Ste)

1801 UAAAUGCCAGAAUUUUACUGGGGUUC

2

1 transposon

1802 AUCCUCAACUGUGAGGGAUUCAA

2 no match

trf
LINE

Rt1a
pseudogene

LTR

ninja-Dsim-like

1 no annotation

Su(Ste)LINE

INE-1
AT-chX-B
ARS406̲DM

Su(Ste)0 repeattrf
Su(Ste)
LINE

LTR

INE-1

diver2AT-chX-B
LINE

G2

Su(Ste)LINEbaggins

1803 AUCGUCUCGGGACUGAAACUCUCAUCCGUUCGUACGAACAACGCCCGUA 2 no match
1804 AUCUCAUCGUCGUAGAAACAAGCCCCGA

2 no match

1805 GUCUCAACUGUGAGGGGAUCCUCAA

2 no match

1806 UUACCAGGUCCGAACAUAAGUGUGUA

21807 UCUCAUCGUCGUAGAACAAGGCCCGACUGUAACGUCGGGUCAAU

2 no match

1808 UCCUUCCCAAGGCGUCUGGAUCCAGU

2

0 transposon

1809 UCUCAUCGUCGUAGGACAAGCCCUA

22 Su(Ste)

1810 CCGAUCUCCUGAGUCGGACUCCGAGCU

20 transposon

1811 GGAUCCCAACUGUGAGAUCCUCAA

2 no match

1812 UUCUCAUCGUCGUAGAACAAGUCCGA

2

1 Su(Ste)

1813 UAAUGCCCCGUAGGUUGCCCUCUGU

2

0 transposon

1814 UGUUUCAUCGUUAGACGGCUACGGGC

2 no match

1815 UUAUAAGGAUGAUGAUACCGAUUAA

2

0 no annotation

1816 UGAGCAACUAAUGACUAGCGCUAA

20 repeat

1817 UCUUCAUCGUCGUAGAACAAGCCCG

2

1 no annotation1818 GAAUCUCAUCGUCGUAGAACAAGCCCGA

2 no match

1819 UCAAGGUUACCCCAGGAUGCUGU

20 repeat

trf

1820 CUGGACCGAACACUUUGAACCAAGU

2

1 Su(Ste)

Su(Ste)1821 GCACACAGAGGAGAGCAGAUGAGGCA

2 no match

1822 UCCGUCGGGAUGAUUUGUACCGUAG

21823 GCACACAGAGGAGAGCAGAUGAGACGCA

2 no match

1824 UCUCAUCGUCGUAGAACAAGCCCGCUGUAACUCGGGGUCAAU

2 no match

0 ncRNA

0 transposon

rRNA
LTR

flea
Su(Ste)LINE

R1
Su(Ste)LINE

R1-element

SAR̲DM

Low̲complexity

F-element

1825 UAAUUACCGGUAUAGCACACUUUUG

21826 CAGCACACAGAGGAGAGCAGAUGAAA

2 no match

1827 AUCAAGGUUACCCCAGGAUGCUGU

21828 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUCGGUCAAU

2 no match

1829 UGUUUUCGUUAGACGGCUCGGGC

2 no match

1830 AAACAUGUUCCUAGACAGGCCCCGA

21831 AACUUACCGUCGUAGAACAAGCCCGA

2 no match

1832 UUUACGUGGACGAGUUGCUCGAUUU1833 UUUCCUGAAAUCCGAGUUAAUAUG

0 coding gene

CG41580-RA¦CG41580

1 repeattrf

0 transposon

LTR

opus

2

0 transposonLow̲complexity

F-element

2

0 no annotation

1834 UGUUUCAUCGUUAGAUGGCUCGGG

2

1 AT-chX

AT-chX-B

1835 UCUCCGGGAGACACCAAUGCUGGCCAA

2

0 coding gene

pseudogene

1836 UGACGAGAACUCGAGCCGCGUAGC

2

0 no annotation

1837 GUUCAUUAUCAGACCACGCCCAAAGU

2 no match

1838 AUCGUCAUCGUCGUAGAACAAGCCCGGACUG

2 no match

1839 UCUGUUUUCAUCGUUAGACGGCUCGG

2 no match

1840 ACAGCUCGAUGCGAGGCCUAGUACA

21841 UCUCACUCGUCGUAGAACAAGCCCGA

2 no match

1842 UAAAUGCCAGAACUUUAUUGGCGUUC

21843 AUCGUCUCGGGAGUGAAAUAAACAAGAUGCAUACGAUGUCGGC

2 no match

1844 UCUCUAUCGUCGUAGAACAAGCCCGA

2

2 no annotation

1845 UAGAUCUUCACCGUUGACCUGGCCC

21 Su(Ste)

Su(Ste)1846 UCGAUCUUCACCGUUGACUAGCCCCA

2

1 Su(Ste)

Su(Ste)1847 UGUUUCAUCGUUAGACGGCUCGGCCC

22 AT-chX

AT-chX-B

1848 UCUCAUCGUCGUAGAACAAGCCCU

2

1 Su(Ste)

Su(Ste)1849 ACUUACGGGAUAAGGAUUGGCUCUG

22 ncRNA

rRNA

1850 UCUGUGUGAACGAAAGCGAGGCGGC

20 coding gene

CG13369-RA¦CG13369

1851 UUCGAUUUUCAACCGGACGCGUGU

2

1 no annotation

1852 UCUUAUCGUCGUAGAACAAGCCCGAG

2

1 Su(Ste)

1853 UCUUGCCGAGGCAUAGAUAAAUUAC

2

0 no annotation

1854 AUAAAAUGCCAGAAUUUUAUUGGGGUUC

2 no match

1855 UCCGAACUACCACGGUGCCCCAGU

2 no match

1856 GGAUCCAACUGUGAGGGGAUCCUCAA

2 no match

1857 UAACAAGAUGCAUACGAUGUGGCG21858 CAGCACACAGAGGAGAGCAAAUGAGAGCA

2 no match

1859 AUCCUCAACUGUGAGGGGAUCCUCA

2 no match

1860 UCGGCUUUCCGGCGAGAACUCGAG

2

0 no annotation

1861 GCUGAACGUAGUCUCUCGAGAGCGAG

2

1 transposon

LTR

invader1

1862 CCCGUACUCUGUGGUGACCAACA

2

0 transposon

LINEbaggins

1863 GCCGAACGUAGUCUCUCGAGAGCGAA

2

1 transposon

LTR

invader1

1864 UAUAUCUUCACCGUUGACUUGGCCC

21 Su(Ste)

Su(Ste)1865 UCUCAUCGUUUUAGAACAAGCCCGA22 Su(Ste)

Su(Ste)1866 AGACUAGCUGGCCGAGUAUUUGAUAU

2

1 Su(Ste)

Su(Ste)1867 CAGCACACAGAGGAGAGCAGAUGAGAGCGA

2 no match

1868 GUUCCUCGGGAUCAAAGGCAACGAGUU

2

1 Su(Ste)

Su(Ste)1869 CUAGCUGGCCGAGUAUUUGAUAUUC

2

0 Su(Ste)

Su(Ste)1870 ACCGGAGAAGACGUUGAAUGGAUCGG

2

0 no annotation

1871 UUUCUGACGAGAACUCGAGCCGCGU

2

0 no annotation

1872 GGGUGCCCAACCAGACGACGUUGUC

20 coding gene

CG30494-RA¦CG30494

1873 CAAGAUAUGACCUAAGCAUACAC

2 no match

1874 GCCGAACGUAGCCUCGAGAGCGAG

2 no match

1875 UUCUCAUCGUCGUAGAACAACCCCGA

2

1 Su(Ste)

Su(Ste)1876 UCCUCAACUGUGAGGGAUCCUCCA

2 no match

1877 UACAUCUCUGUAUGCACACCCCGUU

21878 UCUCCAUCGUCGUAGAACAAGCCCGAC

2 no match

1879 UACAAUCUCCGAGCACGACCCCGAUCU
1880 UGUCACGCGGGAGACCGGGGUUCAAU
1881 GGAUCAUCAACUGUGAGGGGAUCCUCAA

2 no match

1882 CCGAACGUAGUCUCUCGAGAGCGAGA

2

0 transposon

LTR

invader1

1883 UUGGCGCAUACGAGUAAACGAAGGAA

2

0 transposon

LINE

Doc3

1884 CCUCAACUGUGAGGGAUCCUAAA

2 no match

1885 UUAUUGUGCCACUGAGUCGACUAA

2

1 transposon

LINE

Cr1a

1886 UCUCAUCCUCGUAGAACAAGCCCCGA

2 no match

1887 CCUGAUGAAGAAGAGAUGCCCAGUGA

2

0 transposon

LTR

ninja-Dsim-like

1888 CACACAGAGGAGAGCAGAUGAGAGC

2 no match

1889 UAAUGGUAUCCGAGUCCUACUCUAG

2

1 transposon

LTR

blood

1890 UCUCAUCGUCGUAGAACCCCCCCG

2 no match

1891 CGGGCCCAAACACAACCCAGCCCA

2

1 transposon

LTR

ninja-Dsim-like

1892 UUCUCAUCGUCGUAGAACAGCCCGA

2 no match

1893 GUUCGGCUUUCCGGCGAGAACUCGAGC

2

0 no annotation

1894 UUCACCGGGUUUUGGCACUUUGCC

20 transposon

LINER1-element

1895 UUAAAAAAUGACCUGGUGUUAAAACC

2

0 transposon

LTR

roo

1896 CCUCAACUGUGAGGGAUCCUCUAA

2 no match

1897 UGAUAUGACCAGCAUGGACCUAACACU

2

0 Su(Ste)

Su(Ste)1898 UGUUUCAUCGUUAGACGGCUCGGUCC

22 AT-chX

AT-chX-B

1899 UAGAAGAACAUUGAAGCGCUUGACU

2

0 Su(Ste)

Su(Ste)1900 AUCUCAUCGUCGUAGAACAAGCCCUA

22 Su(Ste)1901 UGUGACUGAUCUAGAGUACAAUGUUA

20 transposon

LTR

DM88

1902 UCGAGUUGCAGAAUUGAGGACCGCG

2

0 transposon

LTR

Quasimodo

1903 UAGACCUUUACCGUUGACUUGGCCCA

2

1 no annotation

1904 AAAAAAAAAAAAGGAUCCUCAA

2

2 no annotation

1905 CCCAGAUGCCUCAGGUUGCACCCAU

2

0 transposon

LINE

R1

1906 CCCGUACUCUGUGGUGACCAAAC

2

2 transposon

LINEbaggins

1907 UCCUCAACUGUGAGGGGAUCUCAA

2 no match

0 transposon

LINE

X

1 transposon

LINEbaggins

1 transposon

Su(Ste)DNA

1360

1 transposon

LINE

Circe

2

0 transposon

LINE

Circe

2

0 ncRNAtRNA

Su(Ste)1908 AGAAAAAAAAAAAAGGAUCCUCAA

2 no match

1909 CAAGCCCUGGUAUUCUGAAGCCAAGA

2

1 repeat1910 UAAAGAAUCCUGACAAGAUCCCGGGCC

20 transposon

1911 UCUCCACCGUUGACUUGUCCCACACA

2

1 Su(Ste)1912 GACGAGUCAGAUAUAACGGGCCUAAUC

2

1 transposon

1913 UGUUUCAUCGUUAGUCGGCUCGGG

2

1 AT-chX

AT-chX-B

1914 UAGAUCUUCACCGUUGACUAACCCCA

2

1 Su(Ste)

Su(Ste)1915 UAUUCUGUGGAAGGGGGACCGGGAC

2 no match

1916 UUGUUUCGGAGCGUUGGCCAGUUC

22 transposon

1917 UCUAUCGUCGUAGAACAAGCCCGA

2

1 no annotation

1918 AGAUCCUCAACUGUGAGGGGAUCCUCAA

2 no match

1919 UCCGAACGUACCACGGUGCCCAG

2

1920 UAGCGCUACUCCAGCCGGUGACCAUC

21921 UCUCAUCGCGUAGAACAAGCCCC

2 no match

1922 UCUCAUCAUCGUAGAACAACCCCGA21923 UCUCAUCGUCGUAGAACAAGCCCGACUGU

2 no match

1924 AAAUGCCGGAAGCGAUCCCACUGCUU

21925 UCCGAACGUACCACGGUCGCCCCAGU

2 no match

1926 UCGUCAUCGUCGUAGAACUAGCCCGA22 Su(Ste)

1927 AUUCUUGAGAAUUUGGACGCCGUU

2

0 transposon

LINE

Cr1a

1928 UAAGACUUUGGCUCGUCCCUAUUU

2

0 transposon

LTR

opus

1929 AAAAAAAAAAAAACUA

2

0 transposon

LTR

qbert

1930 AUCUCACCGUCGUAGAACAAGCCCGA22 Su(Ste)

1931 CUUCGGGAUAAGGAUUGGCUCUAA

2

1 ncRNA

1932 AAUAACAAGAUGCAUACGAUGUGGCUCCA

2

0 transposon

1933 AAUUCUCAUCGUCGUAGAACAAGCCCG

22 Su(Ste)

Su(Ste)1934 UCUCAUCGUCGUAGAACAAACCCG

2

1 Su(Ste)

Su(Ste)1935 UAAAUGCCAGAAUUUAUUGGGUUC

2 no match

1936 UAUAAGAUUGGACCCAGUACACUGC

20 transposon

1937 UGUUUCAUCGUUAGACGGCUCGGGUA

22 AT-chX

1938 UAGAUCUUCACCUUUGACUAGCCC

2

1 Su(Ste)

1939 UUAAUAAAACAACGACCCGCUACCGGA

2

0 transposon

LTR

opus

1940 UAAAAUGCCAGAAUUUUAUUGGGGU

22 transposon

LINEbaggins

1941 UAGCACACAGAGGAGAGCAGAUGAGAGCA

2 no match

1942 UUCAACAAGGAUAAUAUGCCCGCUC

20 coding gene1943 GGAUCCUCAACUGUGACAAA

2

2 no annotation

1944 GAUGCCCCUGAUGAAGAAGAGAUGCCCA

2

0 transposon

LTR

ninja-Dsim-like

1945 UAUCUGUAUUUUAGGCAGGGUUGG

2

0 transposon

LINE

Rt1b

1946 GUCAUGCGAGGCGAACCGGGUUCA

2 no match

1947 UUCCCAUCGUCGUAGAACAAGCCCG

2

1 Su(Ste)

1948 UAGAUCUUCACCGUUGACUUGGCCCAA

2

1 Su(Ste)

1949 UGUCCACCAAAGGCAUGCCCGAUA

2

1 transposon

1950 UCUCAUCGUCGUAGAACUAGCCCUAG

2

1 Su(Ste)

1951 AUCAUCUUCUUCUCGACGUUGACCAGC

2

1 transposon

1952 UCCGAGGAACCAAUUGAUCCAGCUC

21 Su(Ste)

1953 CUCAUGUGAGGGGAUCCUCAA

2 no match

1954 CGAAACUCAACUGUGAGGGGAUCCUCAA

2 no match

1955 AAAUCCCAACUGUGAGGGGAUCCUCAA

2 no match

1956 GUACAUCCAGGAAGAUUGCAUUGC

21957 CAACUGUUAGGGGAUCCUAA

2 no match

1958 UCUCAUCGUCGUAGAACAAGCCCGCUGUAACCUCGGGUCAAU

2 no match

1959 CGCAGGAUGUCCGCCGCCUUUGCC

2 no match

1960 UCUCUAUCGUCGUAGAACAAGCCCGUA

2 no match

1961 AUCUCAUCGUCGUAGAAACAAGCCCG

2 no match

1962 CGAAAUAGAUCUUCACCGUUGACUUGGCC

2 no match

1963 UCUUGACGAGUGCCGAGAUGUUGGU

21964 UCUCAUCGUCGUAGAGCAAGCCCCGA

2 no match

1965 UAGAUCUUCACCGUUGACUGGCCCCA

2

1 Su(Ste)

Su(Ste)1966 UAUGGGCCCAGUAAACAUUUAGUAU

20 ncRNA

alphagamma-element

1967 UCGACAACCAGAGAUCUAGAGGGCC

20 no annotation

1968 GGAUCCUCAACUUGAGAUCCUCAA

2 no match

1969 UAGUUUCUAUCGUUAGACGGCUCGGGC

2 no match1970 UAAAAUCCUGACAAGAUCCCGG

21971 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCCGGGUCAAU

2 no match

1972 UAGAUCUUCACCGUUGACUAGCCCCCUC

22 Su(Ste)1973 UAAGAUUGGACCCAGUACACUGC

20 transposon

1974 UGGUUUCAUCGUUAGACGGCUCGGG

2

1 no annotation1975 AUCGUCUCGGGAGUGAAAUACUCUAUCGUCGUAGAACAAGCCCGGA

2 no match

1976 UUCUCAUCCUCGUAGAACAAGCCCGA

2

1 Su(Ste)

Su(Ste)1977 UCCGAGGAACCAAUUGAUCUAGCUG

2

1 Su(Ste)

Su(Ste)1978 AGUUUGACUGGGGCGGUACAUCUCU

2

0 ncRNArRNA

1979 AUCGUCUCGGGGAUGAAAAUCUCAUCGUCGUAGAACAAGCCCGAG

2 no match1980 UUCUCACUCGUCGUAGAACAAGCCCGA

2 no match

1981 UCAAGCCCGGGUAUUCUGAAGCCA

20 repeattrf

1982 AUCGUCAUCAUCGUAGAACUAGGCCCGA

2 no match

1983 UGAUUCCGAUCUUGGACAUUCCCGAUG

2

0 transposon

1984 UUCGGCUUUCCGGCGAGAACUCGAG

2

0 no annotation

1985 AAACUUCGGGAUAAGGAUUGGCUC

2

1 ncRNArRNA

1986 UGUCUCAUCGUCGUAGAACUAGCCCGA

2

1 Su(Ste)

Su(Ste)1987 CGUUGGACCAAUUUCCGAACAUACGC

2 no match

1988 AUGUUUCAUCGUUAUACGGCUCGGGC

22 AT-chX

AT-chX-B

1989 UGUUUCAUCGUUAGACGGCUCCGCC

22 AT-chX

AT-chX-B

1990 AUCUCAUCGUCGUAGAAACAAAGCCCCGA

2 no match

trf
LTR

invader1
Su(Ste)LTR

diver2Low̲complexity

F-element

2 transposonLow̲complexity

F-element

0 transposon

LTR

gypsy81 Su(Ste)

Su(Ste)2 coding gene

CG41580-RA¦CG41580
Su(Ste)Su(Ste)
rRNA
DNA

LINE

1360

Doc
AT-chX-B
Su(Ste)CG40601-RA¦CG40601

Su(Ste)Su(Ste)LTR

opus
Su(Ste)LTRninja-Dsim-like
Su(Ste)0 transposon

LINE

BS3

0 transposon

LINE

G6

2 transposon

LTR

invader1
Su(Ste)

LINE

LTR

Doc

roo

1991 CAAAGGUGGAAAUGAAGAAAGUACA

2 no match

1992 ACCGAUAUGGUUGGACCACAAUCUUU

20 ncRNA

7SLRNA-RA

1993 UGUUUCAUCGUUAGACGGCUCGAGC

2

1 AT-chX

AT-chX-B

1994 AUCGUCGUCGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCG

2 no match

1995 UGUUUCAUCGUUAGACGGCGUCGGGC

2 no match

1996 CAGUAUUGGUCCAAGAACGCUGCC

20 transposon

1997 AAAGUGGAAAUGAAGAAAGUACA

2

2 no annotation

1998 AUCUCAUCGUCGUAGAACAAGCCCGAAA

22 Su(Ste)1999 UCCGAUCUCCUGAGUCGGACUUCGAG

2

0 transposon

2000 UGUUUCAUCGUUAGACGGCUAGGG

2

1 AT-chX

2001 AAAUUUCUCGACGACCCGACUUCC

20 transposon

2002 CUCUCUACCGGACUUCGUUUGACCCC

20 no annotation

2003 ACGCCGGAGGUCGCGGGUUCGAGUCCC

2 no match

2004 UGAUACCGAGAAUGACAAUGGUUG

20 transposon

2005 UCUCAUCAUCGUAGAACAAGCCUGA

2

1 Su(Ste)2006 CAACUGUGAGGGGAUUCCUCAA

2 no match2007 UCCAUGCAGCAGAAGCGACAGAGU

2

0 transposon

2008 UGUCAUCGUCGUAGAACAAGCCCG

2

1 Su(Ste)

Su(Ste)2009 UCGUCAGUCGUACGGUAGAACAAGCCCGGACUG

2 no match2010 CCUUAACUGUGAGGGCAUCCUCAA

2 no match2011 CAGCACACGGAGGAGAGCAGAUGAGAGCA

2 no match2012 AUCCUCAACUGUGAGUGAAAA

2 no match2013 UCUCAUCAUCGUAGAACAAGCCCAA

2

1 Su(Ste)

Su(Ste)2014 AGGUGGAAAUGAAGAAAGUACG

2 no match2015 GUAGGCUCGAUGGUGACGACCGACC

2

1 transposon

2016 UGGACCAUAAGCCUGCCGUCUGCAGA

2

0 no annotation2017 CAGCAUGAUCAACAUCAAUGGCCCCA

2

1 coding gene2018 UCUCAUCGUCGUAGAACAACGCCCGUA

2 no match2019 UCACAUCCGGUAUGAAGAUUGGAGGC

22020 CAACUGUGAGGGGAUCCUCAACUG

2 no match

2021 GACCUUUACCGUUGACUUGGCCC

2

1 no annotation

2022 UAAACCGUCAUUCCAGCGCAAGUUGCCCC

22023 AUAACAAGAUGCAUACGAUGUGGC

22024 UUCUCAUUGUCGUAGAACAAGCCCGA

2

1 Su(Ste)2025 CGAAAUUCUCAUCGUCGUAGAACAAGCCCGA

2 no match

2026 UCGGCCCGAAAUAGGUUCCUGAAG

22027 AGAAAAAAAACCUGAAGAUGAUCCUGAGUCGC

2 no match

2028 AAAGCACCGUUUUCCCGUCCGAUCAA

2 no match

2029 UUCGUGACGAGAACUCGAGCCGCGAAAAA

2 no match

2030 UCUCAAGACCCACGGGAUGACUUC

22031 CGGCACACAGAGGAGAGCAGAUGAGAGCA

2 no match

2032 UCUCAUCCUCGUAGAACAAGCCCGAA

22033 AACUGCAUAUCGAGAGGUCCUCGGUU

2 no match

2034 AUCUCAUCGUCGUAAGAACAAGCCCGA

2 no match

2035 GAUCUCCUGAGUCGGACUCCGAG

2

0 transposon

LINE

R1

2036 UUCAACUGAAGGAGUACGAAUGAUCG

2

0 transposon

LINER1-element2037 UCCUGACGAAGAGCGCAAGAAGA

2

0 transposon

LTR

opus

2038 UUAACACCUCGAGUACGUCUGCUC

20 transposon

LTR

Max

2039 CAAAUCCCUUUCGACAACCAGAGAUC

20 no annotation

2040 UCUCAUCGUCGUAGAACAAGCCCGUACUGUAACCUCGGGUCAAU

2 no match

2041 UCUGCCCGAUGACAAAAAUGGCCCG

20 transposon

LTR

mdg1

2042 UUACCGUACGAUCAGGACAACCUUC

2

2 transposon

LTR

mdg1

2043 UAAUGCCCCGAAGGUUGCCCUCUG

2

0 transposon

LINER1-element2044 UCUCAUCGUAGUAGAACAAGCCCGA

2

1 Su(Ste)2045 UACAAUCUCCGUGCACGACCCCGA

2

0 transposon2046 AUGUUUUCAUCGUUAGACGGCUCGGGGC

2 no match

2047 UUAAUGCCGGAAGCGAACCCACUG

2

1 AT-chX

2048 UAGGCUGAGCGGAGAAUCAGAGUUG

2

1 transposonLow̲complexity

F-element

2049 UCCGAUGUUCUGAAACUGCGUGACCC

20 transposon

LTR

invader3

2050 UCUAGGCUGAGCGGAGAACCAGAGUUG

2

0 transposonLow̲complexity

F-element

2051 UGCAUGCCCUGAAGACCAUUACUC

2

0 coding gene2052 AGAAAAAACCUGAAGAUGAUCCUGAGUCGCA

2 no match

2053 UAAACAAUUGAAAGAUAAGACCCA

22054 GGAUCCUCAACUGUGAGUCAA

2 no match

2055 UCUUCUCGACGUUGACCAGCCUCCU

22056 UCUCAUCUUCGUAGAACAAGCCCCGA

2 no match

2057 CUCGAACUGUGAGGGGAUCCUCAACG

2 no match

2058 UCAUCGUCGUAGAACAAGCCCAA

22059 CGAAAUAGAUCUUCACCGUUGACCUUGGC

2 no match

2060 GCAGUUUGGCAACUACGAGAUCGACACC
2061 UUCUCAUCGUCAUAGAACAAGCCCGA
2062 AACUCAACUGUGAGGGGAUCCUCAA

2 no match

2063 CAAACUGUGAGGGGGAUCCUCAA

2 no match

2064 ACUCAGCCACGAAUUAGCGAU

2 no match

2065 UAAAUUCCAGAAUUUUUAUUGGGGU

2 no match

2066 UUCUCAUCGUCGUAGAACAAGCCCGAA

2

2067 UCAACUGUGGUGGAUCCUCAA

2 no match

2068 CCUCGAUAGUAUAGUGGUUAGUAUCACC
2069 UUCCUGGAGAAUUUGCCCGUAUGUC

0 transposon

LINE

G
Su(Ste)LINE

R1-element
AT-chX-B

LINE

G2

LTR

gypsy3
Su(Ste)

LINE

LINE

baggins

G2
CG9056-RA¦CG9056

LINE

G6

0 transposon

LTR

ninja-Dsim-like

0 transposon

DNA

1360
Su(Ste)0 transposon

LTR

flea

0 transposon

LINE

BS

1 Su(Ste)

Su(Ste)Su(Ste)LINE

Circe
AT-chX-B

pseudogene

0 transposon

LINE

Cr1a

0 transposon

LTR

ninja-Dsim-like

1 Su(Ste)

Su(Ste)20 coding gene

CG3025-RA¦mof

2

1 Su(Ste)

Su(Ste)0 Su(Ste)

Su(Ste)2

1 ncRNAtRNA

2

0 coding gene

CG9925-RA¦CG9925

2070 GACCGAACACUUUGAACCAAGUAU

20 Su(Ste)

Su(Ste)2071 CACACAGAGGAGAGCAGAUGAGAGGCA

2 no match

2072 GCCCCUGAUGAAGAAGAGAUGCCCA

22073 UCAACUGUGGAGGGGAUCCUCAA

2 no match

0 transposon

LTR

ninja-Dsim-like2074 CACACUCAUCAACCAAAGGACGUAGGAC

22075 UAGAUCUUCCCGUUGACUAGCCCCA

2 no match

2076 UCUAGGCUGAGCGGAGAACCAGAG

22077 AACUGAGGGGAUCCUCAA

2 no match

2078 CGUUGACCAAUUUCCGAACAUAA
2079 AUGUGACUGAUCUAGAGUACAAUGU

0 no annotation
0 transposonLow̲complexity

F-element

2

1 transposon

LTR

DM88

2

1 transposon

LTR

DM88

2080 CAGAUCUUCACCGUUGACUAGCCCCA

2

1 Su(Ste)

2081 UUUACCGGAAGAAUCGCGGAUGUGAC

2

0 no annotation

2082 GCUGGCCGAGGAUCCGAUUUUCUU

2

0 Su(Ste)

2083 CGAAAUCAACUGUGAGGGGAUCCCUCAA

2 no match

2084 UUUUAAGGAUGAUGAUACCGAUUAAA

2

1 no annotation

2085 UUCAUAUGAAGAAAUGACCCCUGAAA

2

0 transposon

2086 GCUUUCUGACGAGAAUUCGAGCCGCG

2

1 no annotation

2087 CUCUCAUCCGUCGUAGAACAACGCCCGUA

2 no match

2088 UCGUCAUCGUCGGUAGAACAAGCCCGGA

2 no match

2089 GUCGUCGGGAUGAAA

2

2090 GGUCCCCUGUGUGCCGUUGACGGA

22091 UCUCAUCUCCGUAGAACAAGCCCGA22 Su(Ste)

2092 UGAAAAUGAUGAUACCGACUAAA

2

2 no annotation

2093 AUCGUCGUCGGGAUAGAAAAUAGAUCUUCAACCGUUGAACUUGCCC

2 no match

2094 UACAAUCUCCGAGCAACGACCCCGA

2 no match

2095 CCAAUUGAUCCAGCUGCUGUUGU

22096 GGAUCCUCAACUGUGAGGGUAUCCUCAA

2 no match

2097 UAAUGCCCCUAAGGUUGCCCGA

22098 AUCGUCUCGGGAGUGAAAUACUCUAUCGUCGUAGAACAGCCCGA

2 no match

2099 UCCGAGGAACCAAUUGAUCCAGCUGCU

22100 UUAUACCCAGGUAUUACCACUAU

2 no match

2101 UGAUUAAAGCCUUCGCGUCUUCCACG

2

0 AT-chX

2102 GCCCGUACUCUGUGGUGACCAACA

2

1 transposon2103 UCUCAUCUUCGUAGAACAAGCCCGU

22 Su(Ste)2104 UCUUCUUCUUCUCGACGUUGACCA

2

1 transposon2105 GGAUCCUCAACUGUGAGGCGAUCCUCAA

2 no match

2106 GCCCCAGUGGCCUAAUGGAUAAGGCAUC

22107 UCAACUGUGAGGGGAGUCCUCAA

2 no match

2108 CCCCGUACUCUGUGGUGACCGACACA

22109 AGUCUCAUCGUCGUAGAACAAGGCCCGA

2 no match

2110 CUGAGACACGCAACAGGGA2

2 no annotation

2111 UUAGAAAUGUAAGUCACGCCCUGAGG

22112 UCCUGUUGAUGUGAGGGCCCAAGU

22113 AUCUCAUCGUCGUAGAACAACCCCGA22 Su(Ste)2114 UGUGAUCGGCAUCGAAAUGAAAAC

2

0 transposon2115 AUCUCAUUGUCGUAGAACAAGCCCGA22 Su(Ste)2116 UUCCCCUGCGUAGGCGCUGAGCUCU

2

0 transposon2117 AGAGGCGCCGUAGUUACCACCCCAC

20 no annotation

2118 UCUCAUCGUCGUAAACAAGCCCGA

2 no match

2119 AAAUCCUCAACUGUGAGGGGUCCUCAA

2 no match

2120 UAAGGAUGAUGAUACCGAUUAAAGGCAA

22121 AUUCGUCAUCGUCGUAGAACAAGCCCGG

2 no match

2122 CGUUGACCAAUUUCCGAACAUACA

22123 UCCGAACGUACCACGGUGCCCCCAGU

2 no match

2124 UCGGCCCGAACCCUUCUGGUGUGU
2125 CAAGAUAUGACCAAAACAAAGCAACG

Su(Ste)Su(Ste)LTR

McClintock

1 transposon

LTR

ninja-Dsim-like

0 transposon

LINE

Rt1b
Su(Ste)0 Su(Ste)
2 transposon

Su(Ste)LINE

0 Su(Ste)

Su(Ste)AT-chX-A
LINE

baggins
Su(Ste)LTR

0 ncRNA
1 transposon

R1-elementninja-Dsim-like
tRNA

LINE

baggins

1 transposon

LTR

opus

2 transposon

LINE

G2
Su(Ste)LINE

R1-element
Su(Ste)LINE

R1-element

1 transposon

LTR

DM88

2

0 transposon

LINEbaggins2

0 Su(Ste)

2126 UCCGAGGAACCAAUUUAUCCAGCUGC

2

1 Su(Ste)

2127 UAAGCGUUCGUUGACGUUGAUGG

2

0 transposon

2128 UGGACUUUUUCCGAUGAGCCAGUG

2 no match

2129 UAAAUCUUCACCGUUGACUAGCCCC

21 Su(Ste)

Su(Ste)2130 GCAUAUCAUUCACGCCACGCUCCGA

2

0 Su(Ste)

Su(Ste)2131 CAGCACACAGAGGAGAGCAGGUGAGAGCA

2 no match

2132 CACACGCAUCCUAGAAUCGACCGACCA

22133 CUCAACUGUGGAGGGGAUCCUCAA

2 no match

2134 CAGCACACAGAGGAGAGCAGAUGAGAGCACUGUA

2 no match

2135 UACCUUAUUAAUGGAUUGGCUGAGA
2136 GCCUCCAACCCAAAACUCCCGAACUC
2137 CAGCACACAGAGAAGAGCAGAUGAGAGCA

2 no match

2138 CAAGAUAUGACCAAAGCAAAGACACA
2139 GUGGACCUCGAGACCCUCGACCGUUC

0 no annotation

Su(Ste)Su(Ste)LTR

HMS-Beagle

0 transposon

LTR

flea

2

0 transposon

LTR

Stalker2

0 transposonLow̲complexity

F-element

2

1 transposon

LINE

Cr1a

2

0 transposon

LTR

G4

2140 UUGAUUCGGAAUACCUUCAAUGAGGAG

2

0 transposon

LTR

diver22141 UCUCAUCGUACGUAGAACAAGCCCG

2 no match

2142 CUUCUCAUCGUCGUAGAACAACGCCCGA

2 no match

2143 UUCGGCCCGAACCCUUCUGGUGUG

2

0 transposon

LINEbaggins

2144 ACCUAACGAGGUAGAUGACUCCUGGAA

1

1 transposon

LINE

Cr1a

2145 AAAAAUCCUCAACUGUGAGCGGAUCCUCAA

1 no match

2146 UCCGAGGAACCAAUUGAUCCAGCUGU

1

1 Su(Ste)

Su(Ste)2147 UGUUUCAUCGUUAGUCGGCUCGGGC

1

1 AT-chX

AT-chX-B

2148 UAUGGGCUAAUCCGACUGAGAUGAAG

1

0 no annotation

2149 GAACGCCUCAUUGGUGAUCCGGCCA

10 coding gene2150 UAGUUUCAUCGUUAGACGGCUCGGGC

1

1 no annotation

2151 CGUAGACCAAUUUCCGAACAUACGCC

1

1 transposon

LTR

DM88

2152 CAUCUUCUUCUCGACGUUGACCAG

1

0 transposon

LTR

ninja-Dsim-like2153 AUAAUGUCCCUUAAAUCAGCACUCG

1

0 no annotation

2154 AUGAAUACCUCGGGUACGUCUGCUCUC

1

1 transposon

LTR

GATE

2155 CUAUAAGGAUGAUGAUACCGAUUA

1

1 no annotation

2156 CAAGAUAUGACCAUAGCAAAGACAC

1

1 transposon

LINE

Cr1a

CG31359-RA¦Hsp70Bb

2157 UAGAUUGAACUGAAUUGCAAUUUAU

12158 UAUAUGCUCUCGAAUGUAUCGCCCGA

1 no match

0 no annotation

2159 UUCUCGCGGAUGUAUAUUGGCGGAGGC

10 transposon2160 CUACUCGAAUGAGUGCUUGAUAUGACCA

1

0 Su(Ste)

Su(Ste)2161 UUUUUCAUCGUUAGACGGCUCGGGCG

1

1 AT-chX

AT-chX-B

2162 UUCUCAUCGUCGUAGAACAAGCCGGA

1

1 Su(Ste)

2163 GCAAGCUAACUACAGACGGGGUGA

1

0 transposon

2164 UGUUUCAUCGUUAUACUGCUCGGGC

1

2 AT-chX

2165 AACUGACCCAGUCGGAUCUAUUGUAC

1

1 transposon

LINEbaggins

2166 GCACACAGAGGAGAGCAGAUAGAGCA

1 no match

2167 AUUGGACCUAGGCUUCUGUUGACUCU

1

0 transposon

LTR

flea

2168 AACUAGUGAGGGGGAUCCUCAA

1 no match

2169 UCUGACAAUGGUUCCCAAUUUCGAGC

1

0 transposon

LINE

Rt1b

2170 AACUUCGGGAAAAGGAUUGGCUC

1

1 ncRNA

2171 AGGAUGAUGAUACCGACUAAAGGCAA

1

0 no annotation

2172 AGAUCCAACUGUGAGGGGAAUACCUCCAAC

1 no match

2173 UCUCAUCGUCGUAGAGCUAGCCCGA

1

1 Su(Ste)2174 UCUCAUCGUCGUAGAACUAGCCCGG

1

1 Su(Ste)2175 UCUCCGAUUGGUAUUAGCGAGUUUA

1

0 transposon

LTR

opus

2176 CCCCGUACUCUGUGGUGACCAACAC

1

0 transposon

LINEbaggins

2177 GGCAACUGUGAGAGGGGAUCCUCAA

1 no match

2178 AUUUUAAACAAUUGAAAGAUAAGACCC

1

1 transposon

LINE

Cr1a

2179 AUUCGUCAUCGUACGUAGAACAAGCCCGGA

1 no match

2180 CCCCUGAAGUCCAAUGCACUGUAUAAA

1

0 transposon

LINEbaggins

2181 GCACACAGAGGAGAGCAGAUGAGAGCCA

1 no match

2182 UCCGAGGAACCAAUUGAUCCAGCCCC

12183 AUCGUCGUCGGGAUAGAAACUCAUCGUCGUAGAACAAGCCCGA

1 no match

2184 UCUCAUCGUCUUAGAACAAGCCCAA
2185 AGGACCCCUGCCGUGUGUGAAGCCCC

Low̲complexity

F-element

Su(Ste)LINE

R1AT-chX-B

rRNA

Su(Ste)Su(Ste)2 Su(Ste)

Su(Ste)12 Su(Ste)

Su(Ste)1

0 coding gene

CG33340-RA¦CG33340

2186 UGGAUCUUCACCGUUGACUAGCCCCA

1

1 Su(Ste)

Su(Ste)2187 UGCAUAUCAUUCACGCCACGCUCCGA

1

0 Su(Ste)

Su(Ste)2188 AUAGAUCUUCACCGUUGACUAGCCCCC

1

2 Su(Ste)

2189 CAAAUGGCUGUGAAGCCGGCAAUGCCCCG

1

0 transposon

2190 AGAUCUUCACCGUUGACUUGCCCCGC

10 Su(Ste)

Su(Ste)1 repeattrf
Su(Ste)Su(Ste)
LINE

INE-1

2191 CGAAAUCUCAUCGUUCGUAGAACUAACGCCCGUACUGUAACCUCGGGUCAAU
1 no match
2192 GUUCAAGGUUACCCGAGGAUGCUGU

12193 UCUCAUCGUCGUAGAACCAAGCCG

1 no match

2194 UAUAUCUUCACCGUUGACUAGCCCCA

1

1 Su(Ste)2195 CCAGGCCCAUCUGGUUGAACGUGUCC

1

0 Su(Ste)2196 UAACAAGAUGCAUACGAUGCGGC

1

1 transposon

2197 CCUGUGAGGGAUCCUCAA

1

2 coding gene

CG13650-RB¦CG13650

2198 UCUUCCUGGAAGAUGUGACAGUGGC

10 coding gene

CG13397-RA¦CG13397

2199 UCCAACUGAGGAGUACGAAUGAUC

1 no match

2200 CUUUGACCACUGUUAAUCCAUGCU

1

0 transposon

LINE

Cr1a

2201 UCGUUAACACUUCCCAGAAUGCACAC

1

2 transposon

LINE

Cr1a

2202 AACAAGAUAUGACCUAAGCAAAGACAC

1

2 transposon

DNA2203 UCUCAUCAUCGUAGAACAGCCCGA

1 no match

2204 GGCCUCAACUGUGAGAGGAUCCUCAA

1 no match

2205 GCUUGAUAUGACCAGCUUGGACCGAA

12206 CUCAACUGUGAGGGGAUCCUCAAA

1 no match

2207 UCCGAGGAACCAACUGAUCCAGCUG

12208 CAGCACACAAAGGAGAGCAGAUGAGAGCA

1 no match

2209 UAUAAUCGCCCCGAAGGGUUUGCCCUCUG

1 no match

2210 AAAAUCUCAUCGUCGUAGAACAAGCCCG

1 no match

2211 UAGAUCUUCACCGUUGACUUGGCCCUGUAACUCGGGGUCAAU

1 no match

2212 ACGGAGCGAUGUUCGGGCCCAGCUU

10 repeat2213 CCCUGAUGAAGAAGAGAUGCCCAGU

1

0 transposon

2214 UAGAUCUUCACCGUUUACUUGCCCCC

1

1 Su(Ste)2215 AUCUUCACCGUUGACUUGGCCCACACA

1

0 Su(Ste)2216 UACAAUCUCCGAGCACGACCCCGAUA

1

0 transposon

2217 ACUAGCUGGCCGAGUAUUUGAUACU

1

1 Su(Ste)

Su(Ste)2218 UGAGCAUGACCCUGGACACCACCAAG

1

0 coding gene

CG9327-RA¦Pros292219 UACAUCAUCGUCGUAGAACAAGCCCG

12 Su(Ste)

Su(Ste)2220 CUGAGAAGACUAUUGUACCCGUCGAAUU

1 no match

2221 AGUAGUGGCGAGCGAAAUGGGAUGAGC

1 no match

2222 UCCUCAACUGUAAGGGGAUCCUCAA

1 no match

2223 UAACUGGAAUAGUUUUGACCGUUGA

12224 AUCCUCAACUGUGAGGGGAUCUCAA

1 no match

2225 UCGUCAUCGUACGUAGAACAAGCCCGG

1 no match

2226 UUGAUUGUCUUGAGAACCAGCAGC

12227 GGCAGCUGUGAGGGGAUCCUCAA

1 no match

2228 UCAUCGUCGUAGAACAAGCCCGAGG
2229 GAUCUUCACCGUUGACUUGGCCCACAU
2230 AUCGUCUCGGGAAAUGAAAUCUCAUCGUCGUAGAAGAAGCCCGA

1 no match

2231 UCCGAACGUACCACGGUGCCCCAGUCUGUAACUCGGUCAAU

1 no match

Su(Ste)
DNA

1360

1360

0 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)0 transposon

trf
LTR

ninja-Dsim-like
Su(Ste)Su(Ste)

LINE

LTR

Circe

opus

1 ncRNA

pseudogene

10 Su(Ste)

Su(Ste)1

1 Su(Ste)

Su(Ste)2232 AUUUACCCGACGUUACAGGCCCGACGCCGUCUAACGAUGAAACAAUUUCUAUCCCGACGACGAU
1 no match
2233 GACUAGUGGCCGAGGAUCCGAUUUUC

1 no match

2234 AUCUCAUCGUCGUAGAAAACAACGCCCCGA

1 no match

2235 UCUCCAUCGUCGUAGAACAAGCCCG

1

2 no annotation

2236 AAUAUUGGCGCGGUCAUCGGAACUG

1

0 transposon

LTR

ninja-Dsim-like

2237 UAUGCCCCGUACUCUGUGGUGACCG

1

1 transposon

LINEbaggins

2238 UCAACUGUGAGGGGAGGAUCCUCAA

1 no match

2239 UCAAUUGUGAGGGGAUCCUCAA

1 no match

2240 UACUGAGUCGUUUGCCGAGAGCUGAA

12241 GGCAACUGUGAGGGAUCCUCAA

1 no match

1 transposon

LINE

Rt1b

2242 GGAUCCGAACUGUGAGGGGAUCCUCAACG

1 no match

2243 CUCUACUGACUUCAGUAAGCCCCGU
2244 UACAACUCUGUAUGCACACCCCGUUA

1

0 transposon

LINEbaggins1

0 transposonLINE

2245 AUCGUCUCGGGAGUGAAAAUACUCAUCGUCGUAGAACAAAGCCCGA

1 no match

Circe

2246 UCAACUGAAGGAGUACGAAUGAUCG
2247 UCUUAUCGUCGUAGAACAAGCCCGAC

1

0 transposon

LINER1-element

12 Su(Ste)

2248 AAAAAAAAAAAAGGAAAUCCUCAA

1

2 no annotation

2249 GCACACAGAGGAGAGCAGGUGAGAGCA

1 no match

2250 UUCUUUGAAGAUGGCCCACAUAA

1

0 repeattrf

2251 UCUCAUCUUCGUAGAACAAGCCCGAU

1

1 Su(Ste)

Su(Ste)2252 GCCCCGUACGUCUGUAGGUGACCAA

1 no match

2253 UCUCAACUGUGAGGGGGAUCCUCAA

1 no match

2254 AUUUUUUCAUCGUUAGACGGCUCGGGC

1

2 no annotation

2255 UUCAAGGUUACCCACGGAUGCUGUGC

12 repeat2256 UUCUCAUCGUCGUAGAACAAGCCCGC

1

1 Su(Ste)

2257 UAACAAGAUGCAUACGAUGUG

1

0 transposon

2258 UAGAUCUUCACCUUUGACUUGCCCC

1

1 Su(Ste)

Su(Ste)2259 AGACUAGCUGGCCGAGGAUCCGAUU

1

1 Su(Ste)

Su(Ste)2260 UGUUUCGUCGUUAGACGGCGUCGGG

1 no match

2261 GCCCUGGGAGGAAUACUCCGAGAACGGACC

1

0 coding gene

CG12072-RA¦wts

2262 CAGACACAGAGGGAGCAGAGAGAGCA

1 no match

2263 UGUUUCAUCGUUAGACGGUCUCGGGC

1 no match

2264 GUUCCUCGGGAUCAAGGGCAACGAGUU

10 coding gene

CG40635-RA¦CG40635

2265 UUUCAUCGUCGUAGAACAAGCCCGAG

1

0 no annotation

2266 AAGAGCGUGACCACGGACAUACCCU

1

1 coding gene

2267 AUCGUCUCGGGACUGAAACUCUCAUCCGUCGUACGAACAACCGCCCGA

1 no match

2268 GGAUACCUCAACUGUGAGGGGGAUCCUCAA

1 no match

2269 GCCCCGUACGUCUGUAGUCGACCAA

1 no match

2270 UGGAGAGAACGUGAGACUACAAACGG

1

0 no annotation

2271 GACGGAGCGAUGUUCGGGCCCAG

1

0 repeat2272 UCUUACAAUCUCCGAGCAAGACCCCGA

1

0 transposon

LINE

Circe

2273 UGCUGACGGGGCCCGAAAACACGA

1

0 transposon

LTR

opus

2274 AAAACCUGAAGAUGAUCCUGAGU

10 transposon

LINE

Helena2275 UCAACUGUGAGGUGAUCCUCAA

1 no match

2276 AAGUAAGCCCGAAGAUUGUCCAAU

1

0 transposon

LTR

opus

2277 UCCAAAGGACUCGAAAAACCUCUUGA

1 no match

2278 CCUCAACUGUGAAGGGGAUCCUCAA

1 no match

2279 UAAGUAAGCCCGAAGAUUGUCCAAUGAC

1

0 transposon

LTR

opus

2280 UCUACAUCGUCGUAGAACAAGCCAA

1 no match

2281 UAGAUCUUACCGUUGACUAGCCCCA

1 no match

2282 GUCUCAUCGUCGUAGAACAAGGCCCGA

1 no match

2283 CCCAAGUACAAGCCCGGCCGAAAGACC

1 no match

2284 UCUCAUCGUCGUGACAAGCCCGA

1 no match

2285 CCCGAUGAGAAGAAUGGCCCGUAAAGC

1

0 transposon

LINE

RR497832286 UGAUGACCGAAAUUUGGAAAAACGA

1

0 repeat

ARS406̲DM2287 UCGCAUCGUCGUAGAACAAGCCCGAG

1

0 Su(Ste)

Su(Ste)2288 AUGUUUCACCGUUAGACGGCUCGGGAA

1 no match

2289 CUCAACUGUGAGGGACCACAA

1 no match

2290 UGGCCGAGGAUCCGAUUUUCUU

1

0 Su(Ste)

Su(Ste)2291 AAAAUGCCAGAAUUUUUAUUGGGGGUUC

1 no match

2292 CUCGCGCCGCCUGCGC

1

1 coding geneCG3941-RA¦pita

2293 GUGUGAGGGGAUCCUCAA

1

2 coding gene

CG9684-RA¦CG9684

2294 UGUGUCAUCGUUAGACGGCUCGGGC

1

1 AT-chX

AT-chX-B

Su(Ste)trf
Su(Ste)DNA

1360

CG8230-RA¦CG8230

trf2295 UCUCAUCGUCGUAGAACAAGCCCGUUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUAGAUCUUCACCGUUGACUUGGCCC
1 no match
2296 UUCCGAGGAACCAGUUGAUCCAGC

1

1 Su(Ste)

Su(Ste)2297 CCUCAUCGUCGCAGAACAAGCCCGA

1

2 Su(Ste)

Su(Ste)2298 UCUCAACCGUAGAACAAGCCCGA

1 no match

2299 UAAAUCUCAUCAUCGUAGAACAAGCCCGA

1 no match

2300 UCGCAUCGUCGUAGAACAACGCCCG

1 no match

2301 CUCAACUGUGACCUCAA

1

2 transposon2302 UUAAUAAGGAUGAUGAUACCGAUU

1

2 no annotation

2303 UCUCAUCGUCGUAGACAAGCCCGU

1 no match

2304 CAAGAUAUGAUCAAAGCAAAGACA

12305 AAACCAAGGGGCGCGAGAUAACUCUCU

1 no match

2306 UGGGCUUUCUGACGAGAACUCGAGC

1

0 no annotation

2307 UGCAUAGCCGAAUCGAGACCCAGG

1

0 coding gene2308 CUCUCAUCCGUCGUAGAAUAACGCCCGA

1 no match

2309 CAGCACACAGAGGAGAGCAGAUGAGGAG

1 no match

2310 AAACCUAAGUUACUUACGGGCUCGACA

1

2 Su(Ste)

2311 AUCCGAUCUCCUGAGUCGGACUCCGAGCU

1

0 transposon

2312 UAGAUUUUCACCGUUGACUAGCCCC

1

1 Su(Ste)

2313 UCUCAUCGUCGUAGAACAAGCCCCGACUGUAAACUCGGGGUCAAU

1 no match

2314 UCCGAUCUCCUGAGUCGGACUCCGAGCUC

1

0 transposon

LINE

R1

2315 CAAAGUACUCGAGGCAGCUAAGCGAA

1

0 transposon

DNA

pogo

2316 GAUACAGAACCCGUGGGCAGCAGCGA

1

0 transposon

LTR

2317 UAAUGACCGAAAUUUGGAAAAAAUA

1

0 repeat2318 ACCGAUAACGCCCACCGAGGUCCAAG

1

1 transposon

LTR

ninja-Dsim-like

2319 AUCGUCUCGGGGAUGAAAACUCAACUGUGAGGGGAUCCUCAA

1 no match

2320 CGGGGCCCGAAAACACGAGAUCCGA

1

1 transposon

LTR

opus

0 transposon

LTR

gypsy

DNA

1360

CG14025-RA¦Bsg25D

Su(Ste)LINE

R1-element
Su(Ste)297
SAR̲DM

2321 UCUCAUCGUCGUAGAACAAGCCCGAGCUGUAACGUCGGGUCAAUAUCGUCGUCGGGAUAGAAAUCUCAUCGUCGUAGAACAACGCCCGA
1 no match
2322 CACAAGGUGACCCCAAGCUGCUAU

1

1 transposon

LINE

G2

2323 UCCGAGGAACCCACUGAUCCAGCUA

12324 AAUCCUCAACUGUGAGGGAUCCUCAACUGUAACUCGGGGUCAAU

1 no match

1 Su(Ste)

Su(Ste)2325 UUGACCUCAAAUCAGGUAGGAGUACCCG

1 no match

2326 UGUUUUCAUCUUUUAGACGGCUCGGGC

1 no match

2327 GACACAGAGGGGAGCAGAUGAGAGCA

1 no match

2328 GAUCUUCACCGUUAACUAGCCCCA

12329 ACUCUCAUCGUCGUAGAACAACGCCCG

1 no match

1 Su(Ste)

Su(Ste)2330 UCCUCAUCAUCGUAGAACAACGCCCG

1 no match

2331 AUGGUUGCAACGGGUAACGGGAAU
2332 GCUACGAGGAUGGAAGCGGCGAUGCC

12 ncRNArRNA

1

0 coding gene2333 UCAAAGCGUUGACUACUCCACGAGGG

1

1 transposon

2334 UAAGAUCUUCACCGUUGACUUGGCCCA

1

2 Su(Ste)

Su(Ste)2335 UAGAUCUUCACCGUUGACUACCCCCAC

1

1 Su(Ste)

Su(Ste)2336 AUCGUCUCGGGGAUGAAAAUCUCAUCGCCGUAGAACAAGCCCGA

1 no match

2337 CAGAUCUUCACCGUUGACUUGGCCCA

1

1 Su(Ste)

Su(Ste)2338 AUCUCAUCGUCGUAGAACAAGCCCCGACUGUAAACUCGGGGUCAAAU

1 no match

2339 UCUCAUCGUCGUAGAACAAGCUCGAGCUGUAACUGGGUCAAU

1 no match

2340 GCCCCGUACUCUGUGGUGACCAACU

12341 CAGGCACACAGAGGAGAGCGAGAUAGAGCA

1 no match

2342 CUCUCAUCGUCGUAGAACAAGCCG

12343 CAGCACACAGAGGACGAGCAGAUGAGAGCG

1 no match

2344 UCAAGGUGUAACUAUGACGAUUUGA

1 no match

2345 UAAGGUGACCGGCAAAGCUAAAAU

12346 CUCAACUGUGAGGGGACCUCAA

1 no match

2347 UAAGCCGAAGUAGUCAGUGGUAGUA

12348 UGUUUCAUCGUUAGACGGCUCGGGCCUU

1 no match

2349 GCCCCGUACUCUGUAGUGACCAACU

12350 GGAUCUCAACUGUGAGGGGACCUCAA

1 no match

2351 AUCGUCUCGGGAAUGAAACGUUGACCAAUUUCCUAACAUACGC

1 no match

2352 AUAAGAAAACCACUCGAGCCGCCUUUA

1 no match

2353 CCUCAUCGUCGUAGAAGAAGCCCGA

1

2 Su(Ste)

Su(Ste)2354 UGUUUCAUCGCUAGACGGCUCGGG

1

1 AT-chX

AT-chX-B

2355 UGUUUCAUCUUUGACGGCUCGGGC

1 no match

1 transposon

CG14718-RA¦CG14718
LTR

LINE

2 Su(Ste)

opus

baggins
Su(Ste)0 transposon

LINEbaggins

1 transposon

LTR

diver2

2 transposon

LINEbaggins2356 AUCGUCUCGGGACUGAAACCUCUCAUCCGUUCGUACGAAACAACCGCCCGUAACUGUAACUCGGUCAAU
1 no match
2357 GACGACCACGUUGUAAUGCCACCGAGC

1

0 transposon

2358 UGAUCUUCACCGUUGACUAGCCCCA

1

1 Su(Ste)

LTR

ninja-Dsim-like2359 UCGAACUGUGAGGGGAUCCUCAACG

1 no match

2360 CUCUCAUCGGUCGUAGAACUAAGCCCCGACUGUAACUCGGGGUCAAU

1 no match

2361 CGAAAUGGACUUUUUUCCGAUGAGCCAGU

1 no match

2362 UGAAUUGUCCGAGGAUUUGGCCAAG

1

0 transposon

2363 ACUGAGAAGAUAUUGUACCCGUGAA

1

0 coding gene

pseudogene

2364 CGGAGCGAUGUUCGGGCCCAGCUU

10 repeattrf

2365 UUCAAGGUUACCCCAGGAUGCUUU

1

1 repeat2366 GAAAACCCAAACAAGCCCGGCAAGG

1

0 transposon

2367 UGUUUCAACGUUAGACGGCUCGGGC

1

1 AT-chX

2368 UCUCAUCGUUCGUAGAACAAGCCCGACU

1 no match

2369 UCUCAUCGUCGUAGGACAAGCCCGCUGUAACGUCGGGUCAAU

1 no match

2370 GUUGACUUGACUCUACCACAUGACCUGU

12371 AUCCUCAAUUGUGAGGGGAUCCUCAA

1 no match

2372 UAAAUGCCAGAAUUUUUAUUGGGGGUUC

1 no match

2373 UCCGCUAGCUCAUUUCCCGGGAUGU

12374 CGCACACAGAGGAGAGCAGAUGAGAG

1 no match

2375 UUACCGAGGGCCGAGUACAUAUCGAG

12376 AAGGUGGAAUGAAGAAAGUACA

1 no match

2377 UCUCAUCAUCGUAGAACAAGCCCGAUCUGUAACUCGGGGUCAAU

1 no match

2378 GGACUUCCGAAAAGCCCGCAGAAU

1 no match

2379 UCUCAUCGUCGUAGAACAAGCGAG

12380 AUCCUCAACUGUGAGGGGAUCCUCGA

1 no match

2381 CGCACACAGACGGAGAGCAGAUGAGACGCUA

1 no match

2382 AUCGUCUCGGGGAUGAAAAAAACCUGAAGAUGAUCCUGAGUC

1 no match

2383 AUCGUCUCGGGACUGAAACUUCUCAUCGUCGUAGAACAACGCCCGA

1 no match

2384 AUCCAGUCUCCCGACUAUCAGAUACCCG

12385 UUGGACCAAACACUUUGAACCAAGUACUGU

1 no match

2386 CGAAAUCCGAGGAACCAAUUGAUCCAGCUG

1 no match

2387 CUCAUCAUCGUAGAACAAGCCCGAU

1

0 Su(Ste)

2388 GCCAGAUGGAUGGUUGGCAGGGAU

1

0 transposon

2389 GAAACUGUCUCGGGAUGAGAAAGAA

1 no match

2390 AAUUCCGAUAACGAACGAGACUCA

12391 UCUCAUCGUAACGUGAACAAGCCCG

1 no match

2392 AAGAAUGUUGUACCCCAGCCGGA
2393 UCCCAGGCCCGUAUAACGUUAAUGAUU

Su(Ste)LTR

invader1

trf
LTR

ninja-Dsim-like
AT-chX-B

0 transposon

LTR

micropia

0 transposon

LINE

Fw2

0 transposon

LTR

G4

2 Su(Ste)

1 transposon

Su(Ste)

LINE

INE-1

Su(Ste)LINEG2

0 ncRNArRNA

1

2 coding gene

CG10841-RA¦CG10841

1

1 ncRNArRNA

2394 UAACUUCGGGAUAAGGAUUGGCU

10 ncRNArRNA

2395 GAACCAGCGAGGAGAGGCCCAGAAG

1

0 coding gene

CG16932-RA¦Eps-15

2396 AUCCUCAACUGUAAGGGGAUCCUCAA

1 no match

2397 UAACAAGAUGCAUACGAUGUGAC

12398 AAAAAACCUGAAAGAUGGACUCCUGUAGUCGC

1 no match

2399 GUCGUCGGGAUGAAAACG

12400 GGGAUCCUCAACUGUGAGGGGAUCCUCAA

1 no match

2401 AAACAAAGCAUUGUGAUGGCCCUAG

1

0 ncRNA

rRNA

2402 CUCGAAUGAGUGCUUGAUAUGACCAG

1

0 Su(Ste)

Su(Ste)2403 CUAACUCCGCAUCGAUGACCGCCGC

1 no match

2404 CCGCGGAAAGACGGAAAGACCCCAUG

1 no match

2405 UAGAUCUUUACCGUUGACUUGCCCCG

1

1 Su(Ste)

Su(Ste)1 transposonDNA

2 transposon

LINE

1360
R2

2406 CGUUGGACCAAUUUCCGAAACAUACGCCUG

1 no match

2407 UGAUGACCGAAAUUUGGAAAAACAGAC

12408 GGAUCCUCAACUGUGGGUCAA

1 no match

2409 GACUAGCUGGCCGAGUAUUUGAUG
2410 GUCUCAUCGUCGUAGAACAAGCCCGU
2411 CUCAACUGUGAGGGGUCCUCAA

1 no match

2412 GGCCGAGGAUCCGAUUUUCUUUG

12413 CCUCAUCGUCGUAGAACAAAGCCCGA

1 no match

2414 UUAAGGCCGAGAGCUGAUGACGAGUG

1 no match

2415 AGGGACUAGCUGGCCGAGUAUUUGAUAUUC
2416 UUCUCAUCGUCGUAGAACAAGCCUGA

0 repeat

ARS406̲DM

1

0 Su(Ste)

Su(Ste)12 Su(Ste)

Su(Ste)0 Su(Ste)

Su(Ste)12 Su(Ste)

Su(Ste)1

1 Su(Ste)

2417 UAACAAGAUGCAUACGAUGUGGCA

1

1 transposon

DNA2418 UGUUAAGUGUCGGGAUAGGAGUGCC

1

0 transposon

LINE2419 UCUCAUCGUCGUAGAACAAGCCCGAGA

1

1 Su(Ste)

2420 CUACCUGAAACUCUGUUGCACCCGA

1

0 transposon

2421 CUAAGAUUGGACCCAGUACACUCGCCUU

1 no match

2422 UUUCUCAUCGUCGUAGAAGAAGCCCG

1

1 Su(Ste)2423 UCUCAUCGUCGUAGAACAAGCGA

1

2 Su(Ste)2424 CCAACCUAGAAGUACUGCUGUCACAG

1

0 transposon2425 UCCUUAGUUCAUUCCUGAGUGCGAGCUCCA

1 no match

2426 UGGUCUCAUCGUUAGACGGCUCGGGC

12427 UCAAACUGUGAGGGGAUCCUCAA

1 no match

2428 GUGUUUUCAUCGUUAGACGGCUCGGGC

1 no match

2429 UAGGAAAAACCUAGUUACUUACGGGC

10 Su(Ste)

Su(Ste)2430 UACUCGAAUGAUUGCUUGAUAUGACCA

1

1 Su(Ste)

Su(Ste)2431 AAUGCCGGAAGCGAUCCACUGCUU

1 no match

2432 ACCAAGAUCAUCAACUCGUGUUAUUC

1

0 transposon

2433 UAUAUCUUCACCGUUGACUUGCCCC

1

1 Su(Ste)

2434 UCUCAUCGUCGUAGAACAAGCCCAAG

1

1 Su(Ste)

2435 UCUAGGCUGAGCGUAGAACCAGAGU

1

1 transposon

2436 UAGAUCUUCAGCGUUGACUAGCCCCA

1

1 Su(Ste)

2437 UAAACAAAGAUGCAUACGAUGUGGC

1 no match

2438 ACUGAAGGAGUACGAAUGAUCG

1

0 transposon

LINER1-element

2439 UCUUCUCGACGUUUACCAGCCUCCU

1

1 transposon

LTR

ninja-Dsim-like

2440 CCUCAUCGUCGUAGAACUAGCCCGA

1

1 Su(Ste)2441 AAGGUGGAAAUGGAUCCUCAA

1 no match

2442 UAACAAGAUGCCUACGAUGUGGC

1

1 transposon2443 GGUGCCCGAAGGUGUUGACCAAGUU

10 coding gene

CG33340-RA¦CG33340

2444 CCGAACUUGAGACCGCCCCUGGACA

1

0 Su(Ste)

Su(Ste)2445 UGUUUCAUCGUUAGACGGCUCGGCCGG

1

1 AT-chX

2446 ACAAGAUAUGACCAAAGCAAAGACGC

1

1 transposon

2447 UCUCAUCGUCGUAGAAGAAACCCGA

1

2 Su(Ste)2448 UAGAUCUCACCGUUGACUUGGCCC

1 no match

2449 CGUUUACCAAUUUCCGAACAUACGCC

12450 GUGUUUCAUCGUUAGACGGCUCGGGGU

1 no match

2451 AAGCCCGAUGUUGAUUAAGAAGAAUUA

1 no match

2452 AGGAAAUGUUUCAUCGUUAGACGGCGUCGGGCCG

1 no match

2453 GGCAACAUUUCGAGCCCCCAGAACAAC

1 no match

2454 CAGCACACAGAGGAGAGCAGAUGAGAGCU

1 no match

2455 UGGAGGGAUCCUCAA

1

1 coding gene2456 UUGGAACGAAAUUGGCCUGAUUAGC

1

0 transposon

LTR

GATE

2457 AAUCUAGGCUGAGCGGAGAACCAGAG

1

1 transposonLow̲complexity

F-element

2458 AGUAUACCGAGGCGUUCGGGUGAA

1 no match

2459 UCGAGAGCAUAUAAUGCCCCGAAGGU

10 transposon

LINER1-element

2460 UGUUUCAUCGUUACGACGGCUCGGGC

1 no match

2461 UCGAUGGAGCUCACUUACCUAAUGUA

1

1 transposon

LINER1-element2462 GAAGUUCAAGCCCGGGUAUUCUGA

1

0 repeattrf

2463 GGAUCCUCAACUGUGAGGAGAUCCUCAA

1 no match

2464 UGAUUCCGAGGAACCAAUUGAUCC

10 Su(Ste)

Su(Ste)2465 CAGCACACAGAGGAGAGCGGAUGAGAGCA

1 no match

2466 UCUGCCCGAUGAACAAAAAAUGGCCCGU

1 no match

2467 AACUGUGGGGAUCCUCAA

1

2 no annotation

2468 UCUCAUCGUCGUAGAACAAGCACGAG

1

1 Su(Ste)

2469 UGCUCUCGAAUGUAUGCCCGAUAAA

1

1 transposon

LINER1-element2470 AUCUAGGCUGAGCGGAGAACCAGAG

1

0 transposonLow̲complexity

F-element

2471 UAACUCCGAGGGAGGGUGAAACCAUC

1

0 transposon

LINER1-element2472 CGAAAUCUCAUCGUCGUAGACAAGCG

1 no match

2473 UGUUUACAUCGUUAGACGGCUCGGGC

1 no match

2474 UGUCUCAUCGUCGUAGAACAAGCCCGA

12475 UUGGACCGACACUUUGAACCAAG

1 no match

2476 UUAUAAUGAUGAUGAUACCGACUAAAG

1

1 no annotation

2477 AUCUUAUCGUCGUAGAACAAGCCCGA

1

2 Su(Ste)2478 UUAAACAAUUGAAAGAUACGACCCA

1

1 transposon

2479 UAAUCUUCACCGUUGACUAGCCC

1

2 Su(Ste)

Su(Ste)1360
Doc
Su(Ste)LTR

accordSu(Ste)Su(Ste)LTRninja-Dsim-like

2 no annotation

1 transposon

LINE

Cr1a
Su(Ste)Su(Ste)Low̲complexity

F-element
Su(Ste)Su(Ste)DNA

1360

AT-chX-B
DNA

1360
Su(Ste)LTR

DM88

CG1507-RA¦Pur-alphaSu(Ste)1 Su(Ste)

Su(Ste)Su(Ste)LINE

Cr1a
Su(Ste)2480 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUAGAUCUUCACCGUUGACUAGCCCCA
1 no match
2481 GGGAUCCUCACUGUGAGGGAUCCUCAA

1 no match

2482 AUCGUCUCGGGAGUGAAAUUACUCAUCAUCGUAGAACAAGCCCGA

1 no match

2483 UCUCAUCGGCGUAGAACAAGCCCCGA

1 no match

2484 UGAUACCGAGAAUGACAAUGGCUCC

1

2 transposon

LTR

gypsy32485 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAACAGCACACAGAGGAGAGCAGAUGAGAGCA
1 no match
2486 UGGACCUUUUCCCGAUGAGCCAGUG

12487 CAAGAUAUGACCAAGGUUCAAGAU

1 no match

2488 GAUCUCAACUGUGAGGAUC

1 no match

0 transposon

LINE

G

2489 UAAGGAAAUGACCCAGUUGGCCAGA

12490 AUCUCAUCGUCGUAGAACAAGCCCCGACUC

1 no match

0 transposon

LTR

Stalker

2491 UGUACUACCCCUUCAUGACUCAA

1

2492 UCGAACCCAGAGGCUGGAUCCUCAA

1 no match

0 transposon

LINE

Fw2

2493 GCGCACCGACGCCCGGACCAGACCUU

1 no match

2494 UCUUAUCGUCGUAGAACAAGCCCG

1

1 Su(Ste)

Su(Ste)2495 UUAAUGCCGGAAGCGAUCCCACUCGC

1

2 AT-chX

AT-chX-B

2496 UCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGAACAAGCCCGC

1 no match

2497 CAGCACACAGACGGAGAGCAGUAUGAGACGCA

1 no match

2498 AUGAUACCGAGAAUGACAAUGGUUGAU

12499 CUGUUCGGAAUUCUGUAACCUCGGGUCAAU

1 no match

2500 CCUCAUCGUCGUCGAACAAGCCCGA

1

2 Su(Ste)

2501 UUAAGUCCCGUUACUUGUGCCCAGUU

1

2 transposon2502 UCUCAUCGUCGUAGAACUAGCCGA

1

2 Su(Ste)

2503 GGAUCUCAACUGUGAGGGAUCCUCAA

1 no match

2504 UACUGACCCAGUCGAAUCUAUUGUAC

12505 AUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGAA

1 no match

2506 CCUGCUCUCCCGCUCUAUUGGCUCC

12507 ACAUCCUUCCGGGAGGUAGAGCA

1 no match

2508 AUAACAAGAUGCAUGCGAUGUGGC

12509 AUCCUCAACUGUGAGGCAUCCUCAA

1 no match

2510 UUUACAGUGGCGCCGUCAGUUACUGA

12511 UCUCAUCGUCGUAGAGCGAACGCCCGA

1 no match

2512 UGUUUCAUCGUAGAACAAGCCCGAU

1 no match

2513 GAGGCCGAGCUGUGACCAUCGAG
2514 GCCAUCCUGACUAGCUGAUCCCCUGA

1 transposon

LTR

gypsy3
Su(Ste)LINE

G6
Su(Ste)1 transposon

LINEbaggins

0 transposonLow̲complexity

F-element

1 transposon

DNA

0 transposon

LINER1-element

1

0 transposon

LINER1-element

1

0 transposon

LTR

flea

2515 GGCAAUGGUGACCCGAAACUUUAUCU

1

0 coding gene

CG9064-RA¦Ucp4C

2516 UAGAAGAACAUUCAAGCGCUUGACU

1

1 Su(Ste)

Su(Ste)2517 UCUCAUCGUUGUAGAAACAAGCCCGA

1 no match

2518 UCUCAUCGUGUAGAACAAGCCCG

1 no match

2519 UCUCAUCGUCGUGAACAAGCCCGAG

1 no match

2520 UGAAAUGUUUCAUCGUUAGACGGCUCGGGC

1 no match

2521 UCAUUUCAAUCUAAGACUGGAGUGCC

1

1 no annotation

2522 UCGUCUCGGAUAGAAAAA

1

2 no annotation

2523 UGCAACUGAUGACCUGAUGACUCUU

1 no match

2524 GUAGAUCUUCACCGUUGACUAGCCCCUACUGUAACCUCGGGUCAAU

1 no match

2525 AGUUGAGGACUGUAACUCGG

1 no match

2526 AUCUCAUCGUCGUGAACAAGCCCCGA

1 no match

2527 UCUCAUCGUCGUAGAACAAGCGCGA

1

1 Su(Ste)

Su(Ste)2528 UUCUCAUCGUCGUAUAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)2529 AACAGGAGAAAUGAAGAAAGUACA

1 no match

2530 UCCGCAUGUGAAUGUUGGCCCAGA

1

1 no annotation

2531 UGUUUCAUAGUUAGACGGCUCGGG

1

1 AT-chX

2532 CAUUUGACAGAGUGUGGCUCGAUG

1

0 transposon

2533 CCGGAUGAAGAUUUGGACUACCUCCCC

1 no match

2534 UAUGACCAGCAUGGACCUAACACUU

12535 UAAAAAAGCACCGUUUCCCGUCCGAUCAA

1 no match

2536 AUCUCAUCGUCGUAGGACAAGCCCGA
2537 UGUAAAAUUACAAGACAAACCUGA
2538 AGAAAAAAAAAAAAAAUGAUCCUCAA

1 no match

2539 AUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAACGCCCGA

1 no match

2540 AUCCUCAACUGUGGAGGGGAUCCUCAA

1 no match

2541 CAAGAUAUGACCAAAGCAGACAC

1

1 transposon

2542 AUUCAUCGUCGUAGAACAAGCCCAA

1

2 no annotation

2543 UGUUUCAUCCGUUAGACGGCUCGGGC

1 no match

2544 AUAAGAUCAACGAGAGAUGGCCAUAAA

1

2 transposon

LTR

opus

2545 CGUUGACCAAUUUCCGAACAUACAC

1

1 transposon

LTR

DM88

2546 UCUCAUCGUCGAAGAACAAGCCCG

1

1 Su(Ste)

2547 UUACUGACGAGAACUCGAGCCGCGUA

1

1 no annotation

2548 CACACACAGAGGAGAGCAGAUGAAGCA

1 no match

2549 UUUCUCAUCCUCGUAGAACAAGCCCG

12550 ACUGGUGAGGGGAUCCUCAACUGUAACGUCGGGUCGAAU

1 no match

2551 AUGUUAAGGACGAGAAUCUACCCCCUGUAACGUCGGGUCAAU

1 no match

2552 UGUUUCAUCGUUAGACGGCUCGGGCGU
2553 GUGUUUCAUCGUUAGACGGCACGGGC
2554 GGCCUCAACUGUGAGGGGAUCCUCAA

1 no match

2555 UAGAUCCUCACCGUUGACUUGGCCC

12556 UCUCAUCGUCGUAGGGAAGCCCGA

1 no match

2557 AAUUCUCAUCGUCGUAGAACAAGCCCGA

12558 GGAGAGGUGGCCGAGUGGUUAAUGG

1 no match

2559 UCGGGAACACCCCGUGUUGUUGGCCU

12560 AGUGUAUUUCCUAGACCGAGAGCUG

1 no match

2561 CUCAACUGUGAGGGGAUCCCUCAA

1 no match

2562 UGUGUCAUCGUUAGACGGCUCGGG

12563 GAAUAUCGUCUCGGGAGUGAAAGUACUCGGGAUGAUAGGAUCCUCAA

1 no match

2564 UCUCAUCGUCGUAGAACAAAGCCCGAC

1 no match

1360

AT-chX-B
LINEDoc

0 Su(Ste)

Su(Ste)12 Su(Ste)

Su(Ste)1

0 no annotation

DNA

1360

Su(Ste)1 Su(Ste)

Su(Ste)1

1 AT-chX

AT-chX-B

1

2 AT-chX

AT-chX-B

1 Su(Ste)

Su(Ste)2 Su(Ste)

Su(Ste)2 ncRNA

5SrRNA

1 AT-chX

AT-chX-B

1 Su(Ste)

Su(Ste)2565 UGUUUUCAUCGUUAGACGGCUCGGGGAUGAAAUCUCAUCUUCGUAGAACAAGCCCGA
1 no match
2566 AUCGUCUCGGGAGUGAAAUAAGAGAGUGAUGCCGAGUAUAAAG

1 no match

2567 UCUCAUCGUCGGAGAACAAGCCCGAAG

12568 AUCGUCAGUCGUACGGUAGAACAAGCCCGGA

1 no match

2569 AUGUUUCAUCGUUAGACGGCUCGGGGCC

1 no match

2570 UACAAUCUCCGUGCACGACCCCGAUCU

1

0 transposon

LINE

Circe

2571 UAUGCAACCCUUAUAAGCUGCACCCGA

1

0 transposon

LTR

gypsy12

2572 AAUAACCCGAUUCCUCUUCCAUGAGA

1

1 transposon2573 UCGCAUCGUCCUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)2574 UUGAUACGAAUGAGACCCGCAGUAAA

10 repeattrf

2575 AAAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

2576 CUCAACUGUGAGGGGAUCCCAA

1 no match

2577 CCGAUGAACAAAAAUGGCCCGUAAAG

1 no match

2578 GCCCGUACUCUGUGGUGACCAACAC

12579 GCUGCCGAGAUAUGCUGCGAGUUGCCAACUC

1 no match

2580 AUCGUCUCGGGAGUGAAAUACUCAUCAUCGUAGAACAAGCCCGA

1 no match

2581 UCUCAUCGUCGUAUAACAAGCCCGAGG

1

1 Su(Ste)2582 CUGUUUCAUCGUUAGGCGGCUCGGG

1

1 AT-chX

2583 UCGGCCCGAACCCUUCUGGUGUGUU

1

0 transposon

2584 GCAUAUCAUUCACGCCACGCUCCGAC

1

0 Su(Ste)

Su(Ste)2585 GCACACAGAGGAGAGCAGAUGGAGCA

1 no match

2586 AACUGUGGGUUCAAAUCGAACCCAGGGAA

1 no match

2587 AUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGAACUAGCCCGA

1 no match

2588 AUCGUCAUCGUCGUAGAAGAAGCCCGA

1 no match

2589 AUCGUCUCGGGGAUGAAAAUGUUUCAUCGUUAUACGGCUCGGGC

1 no match

2590 UCUCAUCGUCGCAGAACAACGCCCGA

1 no match

2591 AGAAAUCUCAUCUCGUAGAACAAGCCCGA

1 no match

2592 AUCUCAUCGUCGUAGAAGAAGCCCGU

1 no match

2593 GAUCUUCACCGUUGACUUGGCCCAC

1

0 Su(Ste)

Su(Ste)2594 ACAACUGUGAGUCCUCAA

1

2 coding gene

CG7963-RA¦CG7963

2595 UUCGUGGAGUGAUUUGUCUGGUUA

10 ncRNArRNA

2596 UAAUAAAAACAACGACCCGCUACCGGAG

1 no match

2597 AUGAUUUUUUUCUUUGAAGAUGGCCCA

12598 CAGCACACAGAGGAGAAGAUGAGAGCA

1 no match

2599 ACAGCACACAGAGGAAAGCAGAUGAGAGCA

1 no match

2600 AUCCUCAACUGUGAGGGAUCCUCCAA

1 no match

2601 GGAUUCAACUGUGAGGGAUCCUCAA

1 no match

2602 UCCGGAAGAAUGGUUGCGCAUGGUUA

12 transposon

2603 AUGUUUCAUCAUUAGACGGCUCGGGC

1

2 AT-chX

2604 UCCUCAACUGUGAGGGAUCCCAA

1 no match

1 transposon

LINE

LINE

Doc4

baggins

Su(Ste)AT-chX-B
LINE

baggins

1 no annotation

LINE

TART-A
AT-chX-B

2605 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAAAUCCUCAACUGUGAGGGAUCCUCAA
1 no match
2606 AAAGAACCGAUUCCUCUUCCAUGAG

1 no match

2607 UCUUCAUCGUCAGACGGCUCGGG

1 no match

2608 AAAACCUGAAGAUGAUCCUGACGUCGC

1 no match

2609 GAUAUCUCACAGUUGAGG

1

1 no annotation

2610 UCAGAUGGUGCCUUUAGUUUCCCGAAG

1

0 transposon

DNA2611 CCUAACGUCGAGUUAAGGUGCCCAA

1 no match

2612 CUCCAUGCAGCAGAAGCGACAGAGUU

1

0 transposon

LINE2613 UCUCAUCGCCGUAGAACAAGCCCGAA

1

1 Su(Ste)2614 AUCUCAUCUUCGUAGAACAAGCCCCGA

1 no match

2615 ACAAUGAUCUGAUCGGGUUUUUCUG

1

0 transposon

LINE2616 UUUGCCUGAGGGUGAUAUGCGGUUG

1

1 transposon

DNA2617 CAGCACACAGAGGAGAGCAGAUGAGAUCA

1 no match

2618 CAGCACACAGAAGGAGAGCAGAUGAGAGCA

1 no match

2619 AAAACCCUAGUUACUUACGGGCUCGA

1

1 Su(Ste)

2620 UCGAAUUGCCCUAACGGUGUAACAAA

1

0 transposon

2621 UCAACUGUGAGGGGACCCUCAA

1 no match

2622 AUCUCAUCGUCGUAGAACAAGCCCGC

12 Su(Ste)2623 UUAAGAUCAACGAGAGAUGGCCA

1

0 transposon

2624 UGUUUCAUCGUUAGACGUCUCGUGC

1

2 AT-chX

2625 AUCUAAUCGUCUUAGAACAAGCCCGA

1 no match

2626 UCUCCAUCGUCGUAGAAGUAGCCCGA

1 no match

2627 UAUUGCUUGUGGAACGUCGUUGCC

12628 UCAACUGUGAGAGGAUCCUCAA

1 no match

2629 AUCGUCCUCGGGAUGAAACCGUCAACUGCGAGGGGAUCCUCAA

1 no match

2630 UAAAAACCAAUCGAUGACAACAAAAAAUA

1 no match

2631 UAGAUCUUCACCGUUGACCUUGCCCC

1 no match

2632 AAAACCUAGAAGAUGAUCCUGAGUCG

1 no match

2633 UCCGGUAACGAGCGAGACCCCAACG

1 no match

2634 CUUAUCACCCCGGAAUUGGUUUAU

1 no match

2635 AGGCAAGGGAAGUCGGCAAAAUGGAU

1 no match

2636 UCAACUGUGAGGGUAUCCUCAA

1 no match

2637 UGCACGAGAUGCUUGGACCGCACAUGC

1

0 coding gene2638 UGUUUCAUCGUUAGACGUCUCGGC

1

2 AT-chX

2639 GCUGAGCUGGAUUAGACCUCGCGC

1

0 transposon

2640 CAGCACACAGAGGAAGCAGAUGGAGC

1 no match

2641 UCUCAUCGUCGGUAGAACAAGCCCGGA

1 no match

1360
baggins
Su(Ste)Cr1a1360

Su(Ste)LTR

flea
Su(Ste)LTR

opus
AT-chX-B

0 no annotation

CG8103-RA¦Mi-2
AT-chX-B
Low̲complexity

F-element

2642 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUAGAUCUUCACCGUUGACUUGGCCC
1 no match
2643 UUCAAGGUUAUCCCAGGAUGCUGU

1

1 repeattrf2644 UUCUUUGGUGAGGACUUGAGCGA

1

1 Su(Ste)

Su(Ste)2645 UCUCAUCGUCGUAGGAACAAGCCCCGA

1 no match

2646 GUGGAAAUGAAGAAAGUA

1

1 no annotation

2647 UACUCAUCGUCGUAGAACGAGCCCGA

1

2 Su(Ste)

2648 CAGCACACAGAGGAGAGCCAGAUGAGGAGCA

1 no match

2649 UCAUCUUCUUCUCGACGUUGACCAGCCU

12650 UCCGAACGUACCACGGUGCCCAGU

1 no match

2651 CCGCAUAGCUAGAGAUGACAUACCGGC

12652 UGUUUCAUCUUUAGACGGACUCGGGC

1 no match

2653 CGUGGCAGAGGAACUCGUUGACCUUGA

1

0 Su(Ste)

Su(Ste)2654 UCUCAUCGUUGUAGAGCAAGCCCGA

1

2 Su(Ste)

Su(Ste)0 transposon

Su(Ste)LTRninja-Dsim-like

0 no annotation

2655 AUCUCAUCUUCGUAGAACACCCCGA

1 no match

2656 AUGAGCCGACGAGAUGCCCAGGGCGUG

12657 GUAGAUCUUCACCGUUGACUUGCCCCCCUUGUAACUCCGGGUCAAU

1 no match

2658 GAUCUCAUCGUCGUAGAACAAGCCCG

12659 AUCGUCAUCGUCGUAGAACAAAGCCCGGA

1 no match

2660 UCCUCAUCGUCGUAGAACCAAGCCCCGAGU

1 no match

2661 UUCUCAUCGUAGUAGAACAAGCCCGA

12662 UGGUUUCAUCGUUAGACGGCUCGGGUCG

1 no match

2663 UCUGCCCGAUGACAAAAAUGGCCCGUA

12664 UCUCAUCCGUAGAACAAGCCCGA

1 no match

2665 CAGCUACACAGAGGAGAGCAGAUGAGAGCA

1 no match

2666 AUGAUGACCGAAAUUUGGAAAACGGA

1

1 repeat2667 UGACCAUACAAGAGUACAAGGCACG

1

0 transposon

2668 UGACACGCGGGAGACCGGGGUU

11 ncRNA

2669 AAAAAAAAGGAUCCUCAA

1

1 no annotation

2670 UCUCAUCUUCGCAGAACAAGCCCGA

1

2 Su(Ste)

Su(Ste)2671 UCUCAUCGUCGUUGAACAAAGCCCCGA

1 no match

2672 UGUGACUGAUCUAGAGUACAUGU

1 no match

2673 UCUCAUCUUCGUAGAACAAACCCGA

1

2 Su(Ste)

Su(Ste)2674 GGGUGAGGAGGAUCCUCAA

1 no match

2675 ACAGGCCCAUCUGGUUGAACGUGUC

10 Su(Ste)

Su(Ste)2676 GAGGACUUGGGCGAUUUAAGUGG

1

0 Su(Ste)

2677 UUCUUCUCGACGUUGACCAGCCUAA

1

2 transposon

2678 ACAAGAUAUGACCAAAGCAAAUACCAC

1 no match

2679 UCCAGGCCCGUAUAACGUUAAUGAU

12680 UACUUACAGUGGUUGUCCAGGG

1 no match

2681 UCUCAUCGUCGUGGAACAAGCCCGAGGCUGUAACUCGGG

1 no match

2682 UGCCUCAAGAUAUGACCAAAGCAAA

1

0 transposon

DNA2683 AUCAAAGCGUUGACUACUUCACGAGGAA

1

2 transposon

LTR

opus

2684 AUAAACUGUGAGGGGAGUCCUCAA

1 no match

2685 UGUUUCGUUAGACGGCUCGGGC

1 no match

2686 UGCUCUCGAAUGUAUGCCGAUA

1 no match

2687 UUUUGUAUGCGACGAGUACGCUAU

1

0 transposon

LINE

Rt1b

2688 GGAAAACCUGAAGAUGAUCCUGAGU

10 transposon

LINE

Helena2689 CAACCAGAGAUCUAGAGGGCCCAA

1

0 no annotation

2690 GAGAUCUUCACCGUUGACUAGCCCCA

1

1 Su(Ste)2691 AACCUGUGAGGGGAUCCUCAA

1 no match

2692 AUUCGUCAUCGUCGUAGAAGAAGCCCGG

1 no match

2693 ACUACUUCCAUCCUAAAACUGAUAC

1

0 Su(Ste)2694 UUCAGGAACCUAUUUCGGGCUGAA

1

0 transposon

2695 UGUCACGCGGGAGACCGGGGUUCGA

1

1 ncRNAtRNA

2696 CUGUAACUCGGGCCUGUAACUCGGGC

1 no match

2697 CUCCUCAACUGUGAGGGGAUCCUCAA

1 no match

2698 UAGAUCUUCGCCGUUGACUAGCCCCA

1

1 Su(Ste)

Su(Ste)2699 UACAUUCGAGAGCAUAUAACCCCCG

1 no match

2700 UUGACGAACACCCUUUUGCUUGCGCC

12701 UCUAUCUGAGCGGAGAACCAGAGU

1 no match

2702 UAGAUAUUGAACAGCUCAGAGCGU

12703 UCGUCAGUCGUACGUAGAACAAGCCCGGA

1 no match

2704 UACUCAUCGUCGUAGAACAAGCCCGAG

12705 CAGCACACAGAGGAGAGCAGAUGAAGA

1 no match

2706 GGACCUUUUCCCGAUGAGCCAGU

12707 UCUCAUCGUCGUAAAACAAAGCCCGA

1 no match

2708 AAAGAUAAGACCCAUAUUAAAAAA
2709 GAAACUUCACCUCAGUCGGAUUAGCC
2710 UCUCAUACCGUCGUAAGAAACAACGCCGA

1 no match

2711 GAAUUACUUACCGAGGGUUGUCCAG

12712 AUCUCAUCGUCGUAGAACAAGCCCGCUGUAACUCGGUCAAU

1 no match

2713 GGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

2714 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGUCAAU

1 no match

2715 UUAAUGCCGGAAGCGAUCCCCACUGCU

1 no match

2716 AUGAUCUUCACCGUUGACUUGGCCC

12 Su(Ste)2717 AAAGAAUCCUGACAAGAUCCCGGGC

10 transposon

2718 ACCGGACGGGCCUAGAGUUACUUCCCC

1

2 coding gene2719 AUCGUCAUCGUCGUAGAAGAAGCCCGGA

1 no match

2720 CGUUGACCAAUUUCCGAACAUACCC

12721 UUCUCACUCGUCGUAGAACAGCCCGA

1 no match

2722 UGAUACCGAGAAUGACAUGGUUGA

1 no match

2723 UACAUCUUCACCGUUGACUAGCCCC

1

1 Su(Ste)2724 AUCUCAUCGUCGUAGAACAAGCCC

1

1 Su(Ste)2725 UCCGGUCUCCUGAGUCGGACUCCGAG

1

0 transposon

LINE2726 CAAUAUAUGACCAAAGCAAAGACAC

1

0 transposon

DNA2727 AUCGUCAGUCGUACGUAGAACAAGCCCGGA

1 no match

2728 UCCAACUGAAGGAGUACGAACGAUCG

1

1 transposon

LINER1-element2729 AAACGAAAUGAAAAAUAACGGAUGA

1

0 transposon

LTR

GATE

2730 GGAUAUCUACGAGCUGUUUGAUCCUGUC

1

1 coding gene2731 UAAGGAUGAUGAUACCGACUAAAGGCA

1

0 no annotation

2732 AGAAAUGUUUCAUCGUUAGACGGCUCGGGUU

1 no match

2733 GACCGAAUGAUUUAACCCGGAGACU

12734 GGAUCCUCAACUUGGAUCCUCAA

1 no match

2735 GGCACACAGAGGAGAGCGAGAUGAGAGCA

1 no match

2736 GGAUCUGUGAGGGGAUCCUCAA

1 no match

2737 CCCCAUGUAGUGAUUGUAUCCCCAA

1

1 transposon

LTR

ninja-Dsim-like2 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)0 transposon

LTR

mdg1

SAR̲DM
LTR

blood
tRNA

Su(Ste)LTR

1 ncRNA

ninja-Dsim-like
rRNA

1360

Su(Ste)Su(Ste)DNA

invader2

0 transposonDNA

hopper

1 transposon

LTR

Stalker2

1 Su(Ste)

Su(Ste)0 transposon

LINE

G

1

1 transposon

LINE

Cr1a

1

0 ncRNA

pseudogene

1 Su(Ste)

Su(Ste)1 transposon

0 transposon

1 coding gene

Su(Ste)LTR

invader1
CG40635-RA¦CG40635

LTR

DM88

Su(Ste)Su(Ste)R1-element
1360

CG6829-RB¦Ark

LTR

Rt1c

CG3506-RA¦vas

2738 UUGGACCGAACACUUUGAACCAAGA

12739 CAGCACACAGAGGAGAGCAGAUGAGAGCACUG

1 no match

1 Su(Ste)

Su(Ste)2740 UCAAAUCGUCGUAGAACAAGCCCGA

12741 AUGUUUCAUCGUUAGACGCCUCGGGCC

1 no match

2 Su(Ste)

Su(Ste)2742 UGUACUGUUUGUAGGUGUACUGGCCAA

12743 UCGUCAUCUUCGUAGAACAAGCCCGGA

1 no match

2744 CAUGGAUUGCGCCGCCCUGCCCGC

1 no match

2745 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGU

1 no match

2746 UCUCAUCGUCGUAGAACAUCCCG

1 no match

2747 GGACCGAACACUUUGAACCAAGUA

12748 UGUUUUCAUCGUUAGACGGCUCGGUC

1 no match

2749 UAAAAAGCACCGUUUCCCGUCCGAUCAA

1 no match

2750 CAGAUACCCGUUACUCAGCUAGUGG

1

0 transposon

2751 UGUCACGCGGGAGACCGGGGUUA

1

1 ncRNA

tRNA

2752 GAACACCGCGUGUUGUUGGCCCU

12 ncRNA

5SrRNA

2753 ACUGUAACUCGGGGUCAAUAGUUACAGU

1 no match

2754 CGAAAUGGACUUUUUUCCGAUGAGCCCAGU

1 no match

2755 AUCCUCAACUGUGAGGGGAAUCCUCAA

1 no match

2756 GCCCGAACAUGGCUGUGUUAACUUU

1 no match

2757 UUCCGAAGAGGAUGGAUACCGGCA

1 no match

2758 GAAGAAUUCUUCCUCAGCGUUCCCGG

12759 ACUACUUCCAUCCUAAAAACUGAUAC

1 no match

2760 GAUGGAACCCCAGGAAGCUCACGCUCGUGUAACGUCGGGUCAAU

1 no match

2761 UGUUUUCAUCGUUAGACGCUCGGGC

1 no match

2762 AUGUUUUCAUCGUUAGACGGCUCGGGCC

1 no match

2763 ACAAUAUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

2764 UCUCAUCAUAGAACAAGCCCGA

1 no match

2765 AAACUGAAGGAGUACGAAUGAUCG
2766 CAAGAUAUGACUAAAGCAAAGACAC
2767 GGCUCCUCAACUGUGAGGGGAUCCUCAA

1 no match

2768 CUGUGAGGUCUCCGGACGUGAUCA

1

2 ncRNArRNA

2769 UAUCAUUCACGCCACGCUCCGAC

1

0 Su(Ste)

Su(Ste)2770 UCUGGAUACUAGGUAUCGACGCCGA

1

0 no annotation

2771 CACCGGGUUUUGGCACUUUGCCGCG

1

0 transposon

LINE

R1

2772 UUAAUGCCGGAAGCGAUCCCCACUGC

1 no match

2773 CAAGAUAUGACCUAAGCAAAGACACU

1

1 transposon

LINE

Cr1a

2774 CCCAAGAAACCCAAGCCUAAGGU

1

2 transposon

LTR

opus

2775 UCCUGUGAGGAUCCUCAA

1

2 transposon

LINE

Cr1a

2776 CUUAAUGCCGGAAGCGAUCCCACCUG

1 no match

2777 UGUUUCAUCGUUAGACGGAUCGGGC

1

1 AT-chX

AT-chX-B

2778 UCUCAUCGUCGUAGAACAAGCCAGAG

1

1 Su(Ste)

Su(Ste)2779 GAUCCAACUGUGAGGGAUCCUCAA

1 no match

2780 CAGCACACAGACGGAGAGCAGUAUGAGACGCUA

1 no match

2781 UCAAUACGACCCGGUUUAUUAAAAUC

1

0 transposon

LTR

mdg1

2782 CUCGGCCUCGGGCACAGUUCGCUUG

1

0 transposon

LINER1-element2783 CUCUCAUCGUCGUAGAACAAGCCCGUA

1

2 Su(Ste)2784 AUAAGGAUGAUGAUACCGAUUAAA

1

0 no annotation

2785 GCUCUCGAAUGUACGCCCGAUAUACG

1

1 transposon

LINE

2786 UGCAUUGCCCAACAAUACAUUCUC

1

0 transposon

DNA2787 CAGCAACAGAGGAGAGCAGAUGAGAGCUA

1 no match

2788 GGAUACGGAGACCGAGGUUCAAACCGAG

1 no match

2789 UGUCUUGAGAACCACCAGAUUGAUAGCC

12 ncRNA

2790 CGUUUCAUCGUUAGACGGCUCGUGC

1

2 AT-chX

2791 UCCUAGAAAAAAACGAGGUUCACCCAAU

1

0 transposon

LINE

F

2792 UUAGUAAAUGUAAGUCACGCCCUGAGG

1 no match

2793 AAAAAGGAUCCUCAA

1

1 transposon

LTR

HMS-Beagle

2794 UGUUUCAUUUAGACGGCUCGGGC

1 no match

2795 UCUCAUCAUCGUAGAACAAGCCCGG

12796 UGUUUAUCGUUAGACGGCUCGGGC

1 no match

2797 UCCUAAGAUGAUGUGACCCAGAUGCU

1 no match

2798 UACAUCAAGCUUCGCCAUCGCCCGGU

12799 UAGAUCUUCACCGUUGACUAGCCCCCACUGUAACUCGGGGUCAAU

1 no match

1 transposonLINE

0 Su(Ste)baggins

Su(Ste)

LINE

INE-1

0 transposon

LINE

INE-1

1

1 transposon

LINER1-element

1

0 transposon

DNA

Su(Ste)R1-element1360

pseudogene
AT-chX-B

1 Su(Ste)0 transposon

1360

Su(Ste)LINE

R1-element

2800 UCUCAUCGUCGUAGAACAAGCCCCGACUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUGUUUUCAUCGUUAGACGGCUCGGGC
1 no match
2801 UCAUCUUCUUCUCGACGUUGACAG

12802 UGUUUUCAUCGUUAGACGGCUCGAGGC

1 no match

2 transposon

LTR

ninja-Dsim-like2803 UCUCAGUCGUCGUAGAACAAGCCCGACUG

1 no match

2804 UCUCAUCGUCGUAGAGGAAGCCCGA

1

2 Su(Ste)2805 UGUGAGGGGACUCCUCAA

1

2 transposon

LTR

3S18

2806 CUCUCAUCGUCGUAGAAUAACGCCCGA

1 no match

2807 AUCGUCCUCGGGAUGAAAUCUCAUCGUCGUAGAACGAAGCCCGGA

1 no match

2808 UUUUGACAGGAAAAAUGUUCUGAGUU

1

0 transposon

LINE

G2

2809 UCUCAUCGGCGUAGAACAAGCCCAA

1

2 Su(Ste)

2810 CAAGACAUGACCUAAGCAAAGACAC

1

2 transposon

2811 UUCUGACGAGAACUCGAGCCGUAG

1 no match

2812 UGUUUCAUCGUUAGACGGCCUCGGGC

1 no match

2813 UCUCAUCGUUAGACGGCUCGG

1

1 AT-chX

2814 UUUAAGGCAACUCCCUGGACGCACGA

1

0 transposon

LTR

ninja-Dsim-like

2815 GCACACAGAGGAGAGCAGAUGAAAGCA

1 no match

2816 UCCGAACGUACCCGUGCCCCAGU

1 no match

2817 UCCAACGAGAGAGCGGAGAGCCAGC

1

0 transposon

Unknown

RR509602818 GUGUGACCCCUGGUACUGAAAUGCA

1

1 transposon

DNA

Bari1

2819 AUCUCAUGUCGUAGAACAAGCCCGA

1 no match

2820 AGAAAUCAACUGUGAGGGGAUCCUCAA

1 no match

Su(Ste)Su(Ste)LINE

Cr1aAT-chX-B

2821 UCUACUGACUUCAGUAAGCCCCGU

12822 AUCGUCAUCGUCGUAGAACAAGCCCG

1 no match

0 transposon

LINEbaggins

2823 GACUAGCUGGCCGAGUAUUUGUUA

11 Su(Ste)

Su(Ste)2824 UAGAAAACAACCAGGACUAUAUUCGGA

1

0 Su(Ste)

Su(Ste)2825 GAGAUAGCAGGACUGGGGGCGG

1 no match

2826 UCGCAUCGUCGUAGGACAAGCCCGACUGUAACUCGGGGUCAAU

1 no match

2827 UCCGAGGAACCAAUUUAUCCAGCUG

1

1 Su(Ste)

Su(Ste)2828 GCGACACAGAGGAGAGCGAGAGAGAGCA

1 no match

2829 UAUAUUCGGAGAAUUACUUACCGAGGG

1

1 Su(Ste)

2830 UCGAAAGGAUGAUGGAGAAGAUU

1

1 transposon

LINE

G2

2831 AUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCC

1 no match

2832 GCUCGUCCUCGGGUUUGUUGUUGAU

1

0 transposon

LINE

G6

2833 CAAGUAAGCCCGAAGAUUGUCCAAU

1

1 transposon

LTR

opus

2834 AGUCUUCAUCGUCGUAGAACAAGCCCCGUACUGUA

1 no match

2835 UGUCACGCGGGAGACCGGGUUCAA

1 no match

2836 UCUCAUCGUCGUAGAACAAGCCCAACUGUAACGUCGGGUCAAU

1 no match

2837 UACUCGAUCGUCGUAGAACAAGCCCGACGUGUAACGUCGGGUCAAU

1 no match

2838 UCUCAUCGUCCUAGAACUAGCCCGA

12839 CGAAAUCUCAUAGUCGUAGAACAAGCCCGA

1 no match

2840 CGCGAAAGACCCAAGUUAGAUCCUAAAA

1 no match

2841 UCUCAUCGUCGUAGAACAACGCCCGACUA

1 no match

2842 UCUUAUCGUCGUAGAACAAGCCCUA

12843 GCGUCCGAAAACAAGGCCCGUCGCU

1 no match

2844 CGAAAUGUUUCAUCGUUACGACGCCUCGGGC

1 no match

2845 CUUCGAGAGCGAACCCGGAGAA

1 no match

2846 CAGCACACAGAGGAGAGCAGAUGAGGCACUGUAACUCGGGGUCAAU

1 no match

2847 UCUCAUCGUCGUAGCACAAGCCCG

12848 UCCCGAUCUCCUGAGUCGGACUCCCGAGC

1 no match

2849 UGUUUCUAUCGUUAGACGGCUCGGAC

1 no match

2850 AUCUCAUCGUCCUAGAACAAGCCCG
2851 UUCACCUUUGACUUGGCCCACACAU
2852 CUCGAUGUCGGCUCGUCGCAUCCUGGG

1 no match

2853 UCCAAUUAAAAAAUGACCUGGUGUU

1

0 transposon

2854 AAAAGUUGACCGAACUUGAUUAUUUAG

10 ncRNArRNA

2855 UACGACCAAGUAGGACUAUUGUA

1 no match

2856 CCGAACUUGAGACCGCCCCUGGAC

1

0 Su(Ste)

Su(Ste)2857 AUCCUCAACUGUGAGGGAUCCGUCAA

1 no match

2858 UAGAUCUUCACCGCUGACUAGCCCCG

1

2 Su(Ste)

Su(Ste)2859 AACUUCGGGAUAAGGAUUGGCUCUC

1

1 ncRNArRNA

2860 GCACACAGAGGAGAGCAGACGAGAGCA

1 no match

2861 AUCUCAUCGUCGUAGAACCAGCCCGAG

1

2 Su(Ste)2862 AACUGCACCCUGAGUAUGGCAUUAUA

10 transposon

2863 CUCAACUGUGAGGGAUCCUCAACG

1 no match

2864 GAAAAUCUACUACGUACGUCGUAGAACAAGACCCGA

1 no match

2865 AGCACACGGAGGAGAGCAGAUGAGAGCA

1 no match

2866 UGACUGUUCCCGUUGAUUCCCGUU

1

0 no annotation

2867 UCUCAUCGUCGUAGAACACGCCCGA

1

1 Su(Ste)

Su(Ste)2868 AUCGUCUCGGGGAUGAAAAUAAAUGCCAGAACUUUAUUGGGGUG

1 no match

2869 CAGCACACAGAGGAGAGGCAGAUGAGAGA

1 no match

2870 CUCUACUGUGAGGGGAUCCUCAA

1 no match

2871 CUCGAUCGUCGUAGAACUAGCCCGAGG

1 no match

2872 CAGCCCACAGAGGAGAGCAGAUGAGAGCA

1 no match

2873 UCUCAUCGUCGUAGCAGAAGCCCGA

1

2 Su(Ste)

Su(Ste)2874 UAGAUCUUCACCGUUGGACUUGGCCCCA

1 no match

2875 AUCGUCGUCGGGAUAGAAAUGUUUCAUCGUUAGACGGCUCCGGGC

1 no match

2876 CUCCGAACGUACCACGGUGCCCCAGU

12877 UUCUCAUCGUCGUAGAAACAAGCCCGA

1 no match

2878 AAAACCUGAAGAUAAUCCUGAGUCGC

12879 GUCAUCUUCUUCUCGACGUUGACCUA

1 no match

2880 UCCGAGGAACCAGUUGACUCCAGCUC

1 no match

2881 GAUCCAACUGUGAGGGGGAUCCUCAA

1 no match

2882 UCAACCUGAGAGUUUGAUCCUG

1 no match

2883 GCCCCGUCCUCUGUGGUGACCAACA

12884 UAUCCUCAACUGUGAGGGAUCCUCAA

1 no match

2885 UAAGCCCGAAGAUUGUCCAAUGACCA
2886 AAUACUGACCCAGUCGGAUCUAUUGUA
2887 AUCGUCUCGGAAUCGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

2888 UGAUAUGACCAGCAUGGACCUAACAC

1

0 Su(Ste)2889 CAACCAGAGAUCUAGAGGGCCCAAGA

1

0 no annotation

2890 UCUCAUCGUCGUAGAACAACCCCGACUGUA

1 no match

2891 UCUCAUCGUCGUAGAACAAGCCCGAGACGAU

1 no match

2892 UUCCCAUCGUCGUAGAACAAGCCCAA

1

2 Su(Ste)2893 UGUAGUUAUAUUCAUAGAUGGCCCUA

1

0 transposon

2894 UCGCAUCGUCGUAGAACAAGCCCCGA

1 no match

2895 AAAAGCACCGUUUCCCGUCCGAUCAA

1 no match

2896 AAUCCCAACUGUGAGGGGAUCCUCAA

1 no match

2897 UCUCAUCGUCGUAGAACAAGCCCGCUGUAACUCGGUCGAAU

1 no match

2898 AGAAAUCUCAUCGUCGUAGAACAACGCCCGA

1 no match

2899 AGAAGCAUUCCGAAAGUUCCGAGUACA

1

0 ncRNA

2900 GCCCCGUACUCUGUGGUGACCGACA

1

1 transposon

2901 UUUUCAUCUUUAGACGGCUCGGGC

1

2 AT-chX

2902 UUUCGCCGAGGUGUGAAAAGUUGA

1

0 transposon

LTR

gypsy122903 UUAAACAAUUGAAAGAUAAGACCCAU

1

0 transposon

LINE

Cr1a

Su(Ste)1 Su(Ste)

Su(Ste)2 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)12 Su(Ste)

Su(Ste)1

1 Su(Ste)

Su(Ste)LTR

roo

Su(Ste)LINE

Rt1b

0 transposonLow̲complexity

F-element

1 transposon

LINE

Helena1 transposon

LINEbaggins1

0 transposon

LTR

opus

1

2 transposon

LINEbaggins
Su(Ste)Su(Ste)LTR

HMS-Beagle

ncRNA
LINE

baggins
AT-chX-B

2904 CAAAGGACUCGAAAAACUCUUGAA

12905 AAAGGUGGAAAUGAAGAAAGGUGAA

1 no match

2906 UGUACUACCCCUUCAUGACUCAAAGA

1

2 transposon

LINE

G2

0 transposon

LINE

Fw2

2907 UCUCAUCGUCGUAGAACAAGCCCCGACUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGGC
1 no match
2908 AUCUCUAUCGUCGUAGAAGAAGCCCGA

1 no match

2909 AUCUCAUCGUCGGUAGAACCAAGCCCGA

1 no match

2910 CUGGCCGAGUAUUUGAUAUUCUUUG

12911 UGUUUCAUCGUUAGACGCUCGGGCG

1 no match

2912 CCCCGCGGAAAGACGGAAAGACCCCAUG

1 no match

0 Su(Ste)

Su(Ste)2913 UGUUUCAUCGUUAGACGGCUCGGGCUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAAUGUUUUCAUCGUUAGACGGCUCGGGC
1 no match
2914 CCUCUACUGACUUCAGUAACGCCCCG

1 no match

2915 UGAUUCAUCCAGGGAAUGUCAGCGC

12916 UACAACUGUGAGGGGAUCCUCAA

1 no match

2917 UCUCAUCGUCGUAGAACAAGCCCGACUG

1 no match

2918 UGCCCGAUGAGAAGAAUGGCCCGUA

12919 CUAGAUCUUCACCGUUGACUACGCCCCA

1 no match

2920 AUCGUCUCGGGGAUGAAAUGAAUUUUGGCCAGUAUUUCAUCUC

1 no match

2921 AUCUCAUCGUCGUAGAACUAGCCCAA

1

2 Su(Ste)2922 CCCAAUGAGAUGGCCUUUGGCGAGA

1

0 transposon

LTR

2923 UCUGCCCGUCCGAACAAUCUUUGGCC

10 transposon

LTR

2924 UGAAUACAUCCAGGACAAGUUCAAUC

1

0 coding gene2925 UCCUGACGAAGAGCGCAAGAAGAGG

1

0 transposon2926 AUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGAG

1 no match

2927 GAGGCCCCGUAGUUACCACCCCAC

1

1 no annotation

2928 UCCGAUCUCCUGAGUCGGACUCCGAA

1

1 transposon2929 AUCCUCAACUGUGAGGGGAUCUCCAA

1 no match

2930 UCUCAUCGUCGUAGAAGAAGCCCGUA

1

2 Su(Ste)

2931 AUCUGGAUACUAGGUAUCGACGCCGA

1

0 no annotation

2932 AAAAUCUCAUCGUCGUAGAACUAGCCCGA

1 no match

2933 UCUGUUUCAUCGUUAGACGACUCGGG

12934 UCUCCAUCGUCGUAGAACAAGUCCCGA

1 no match

2935 AUCGUCUCGGGGAUGAAAACGUUUUCAUCGUUUAGACGGCUCGGGC

1 no match

2936 UCUCAUCGUCGUAGAACAAGCCCCGAG
2937 UUAUUACCCAGGUGAUUACCACUAUU

0 transposon

LTR

ninja-Dsim-like

0 transposon

LINE

RR49783

Su(Ste)Quasimodo
297
CG13591-RA¦Ssl
LTR

opus

LINE

R1
Su(Ste)1 AT-chX

AT-chX-B

1

2 Su(Ste)

Su(Ste)12 Su(Ste)

Su(Ste)2938 ACCAGAGAUCUAGAGGGCCCAAGAAA

1

0 no annotation

2939 AUCGUCGUCGGGAUGAAACUCAACUGUGGAGGGGAUCCUCAA

1 no match

2940 UCAACUGGUGAGGGGAUCCUCAA

1 no match

2941 AUCGGUCAGUCGUACGGUAGAACAAGCCCGGGACUG

1 no match

2942 UACAAAACAAGUACAGGAUCCUCAA

1 no match

2943 AUCGUCUCCGGGAUGAAAUUUCUGACGAGAACUCGAGCCGCGU

1 no match

2944 GGAUCCCAACUGUGAGG

1

2 coding gene

CG11326-RA¦Tsp

2945 AAUGCCCAAGAAAAUGAUGACCAGCAA

1

0 coding gene

CG42266-RA¦CG42266

2946 AUCUCAUCAUCGUAGAACAACGCCCGA

1 no match

2947 AUCACGCGGGAGACCGGGGUUCAAUU

1

1 ncRNAtRNA

2948 UCGGCCUUCUGACGAGAACUCGAGCC

1

1 no annotation

2949 GCCCGUACUCUGUGGUGACCAAU

1

2 transposon

2950 UCAUCAUCGUAGAACAAGCCCGA

1

0 Su(Ste)

2951 CCUCAACGGAUCCUCAA

1

2 transposon

2952 UUCCUCGGGAUCAAGGGCAACGAGUUC

10 coding gene2953 AACUGUGAGGGGGAUCCUCAA

1 no match

2954 GCCGAACGUAGUCUCUCACGAGCGAGA

12955 UGGACUUUCCCGAUGAGCCAGU

1 no match

2956 GAAUAUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGAACAAGCCCGC

1 no match

2 transposon

LINEbaggins
Su(Ste)LTR

roo
CG40635-RA¦CG40635

LTR

invader1

2957 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAAUCGUCUCGGGGAUGAAAAUGUUUCAUCGUUAGACGGCUCGGGC
1 no match
2958 UAAAGAUUGGACCCAGUACACUGCC

1

2 transposon

LINE

Doc

2959 AUAAAUGCCAGAAUUUUAUUGGGG

10 transposon

LINEbaggins

2960 UCUCAACUCCGAACUCAACUGUACCGA

1

0 transposon

LTR

gypsy112961 UUAUACAUCUGCGAGCCAUACCACG

1 no match

2962 UUGGACCAAACACUUUGAACCAAGUA

1

1 Su(Ste)

Su(Ste)2963 GAGGACUUGAGCGAUUUAAGUGG

1

1 Su(Ste)

Su(Ste)2964 UCAACUGUGAGGGGGACCCUCAA

1 no match

2965 UUCCGAGGAACCCAUCGAUCCAGCU

1

1 no annotation

2966 CCAUCCUAAAACUGAUAGACAGAU

1

0 Su(Ste)

Su(Ste)2967 UGUUUCAUCUUUAGACGGCUCGGCC

1

2 AT-chX

AT-chX-B

2968 UCCGAAGAGGAUGGAUACCGGCA

1 no match

2969 CCCGAAGCGGACCAGCCCCAAUUAUUCUGUAACUCGGGGUCAAU

1 no match

2970 UCUCAUCAUCGUAGAACAAGCCC

10 Su(Ste)

Su(Ste)2971 GACUAGCUGGUCGAGGAUCCGAUU

1

1 Su(Ste)

Su(Ste)2972 UCGGGAUAAGGAUUGGCUCUGAAGAU

1

0 ncRNArRNA

2973 UAAAUGCCAGAACUUAUUGGGGUUC

1 no match

2974 AACUAGUGAGGAGGAUCCUCAA

1 no match

2975 AACAACUGUGAGGGGGAUCCUCAA

1 no match

2976 UGUUUCAUCGUUAGAAGGCUCGGGC

1

1 AT-chX

AT-chX-B

2977 CUCUCAUCUUCGUAGAACAACGCCCGA

1 no match

2978 UGUUUUUAGGUGUACUGACCCAGUC

1

1 transposon

2979 CGAAAGUAGAUCUUCACCGUUGACUUGGCC

12 Su(Ste)

2980 UAAAAGAAAUCCUGACAAGAUCCCGGGC

1 no match

2981 ACAAGAUAUGACCUAAGCAAAGACAC

12982 CUGUAACUCGGUCAAUCGGGUCAAU

1 no match

2983 GAUGAACCCCAGGAAGCUCACGCUU

12984 UAAAUGCCAGAAUUUUAUUGGGGGUUC

1 no match

2985 UCUCAUCGUCGUAGAAUUAGCCCGA

12986 AUCGUCUCGGGGAUGAAAAUGUUUCAUCUUAGACGGCUCGGGC

1 no match

LINE

Su(Ste)1 transposon

DNA

0 transposon

LTR

1 Su(Ste)baggins1360
springer
Su(Ste)2987 GCUCCAAAAUGGCGGCCGCCCCGACGC

1

0 transposon

2988 AUCUCAUCGUCGUAGAACUAGCCCGAGG

1

1 Su(Ste)

LTR

ninja-Dsim-like2989 CACCAGGAAGAUUGAUGAGGACA

1

0 transposon

LINE

Rt1b

2990 CACACACAGAGGAGAACAGAUGAGAGCA

1 no match

2991 UCCGAAAGAGAAAAUAUUCAUC

1

1 transposon

LTR

HMS-Beagle

2992 UUCGGACCGAACACUUUGAACCAAGUCUGUAACCUCGGGUCAAU

1 no match

2993 UUCUCAUCGUCGUAGAACAAGCCCGCG

12994 CGAAAUGUUUCAUCGUUACGACGGCCUCGGGC

1 no match

2995 CUUCAUCAUCGUAGAACAAGCCCGA

12996 GCACACAGAGGAGAGCGAGAUGAGAGCA

1 no match

Su(Ste)1 Su(Ste)

Su(Ste)2 Su(Ste)

Su(Ste)2997 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAACUGUAACUCGGGGUCAAUGGGUCAAU
1 no match
2998 GGAUCCUCAACUGUGAGGUGAUCCUCAA

1 no match

2999 ACUGUGAGGUGAUCCUCAA

1 no match

3000 UGUUUUCAUCGUAAGACGGCUCGGG

1 no match

3001 GACUACCUGGCCGAGUAUUUGAUA

1

1 Su(Ste)

Su(Ste)3002 GAUUCCGGAGAGGGAGCCUGAGAAACG

1

0 ncRNArRNA

3003 AUCGUCUCCGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

3004 GAAGAAGAAAGUACAGUGAGG

1

2 no annotation

3005 GAUAUGCUGCGAGUUGCCAAUCUCC

1

0 transposon

LINE

X

3006 GAUGUCCGCGAGAUUGCCGCAAACU

1

0 transposon

LTR

opus

3007 GAGACUCAACUGUGAGGGGAUCCUCAA

1 no match

3008 ACGACCCGCUACCGGAGGACGCCA

1

0 transposon

LTR

opus

3009 AGCACACAGAGGAGAGCAGAUGAGACA

1 no match

3010 UAAGAAAAUGUCCGGACAGCUGG

1

0 Su(Ste)

3011 CGAAGGUAUUCGUAAUGACCGCUU

1

0 transposon

3012 UCUCGAUCGUCGUAGAACAAGCCCGCG

1 no match

3013 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUGGGUCAAU

1 no match

3014 UUCGAGAAGCGAACCCGGUGAACUGAA

1 no match

3015 GGAUUCUCAACUGUGAGGGGAUCCUCAA

1 no match

3016 CCAUCAGAGACUUUGGUGGCCAACAA

13017 GGAUCCCAACUGUGAGUCCUCAA

1 no match

3018 UAUAAUGCCCCGUAGGUUGCCCUCU

13019 UCUCAUCGUCCGUAGAACAAGCCCGCUGUAACUCCGGGUCAAU

1 no match

3020 ACUUACGGGAGUAAGGAUUGGCUCUG

1 no match

3021 CUCAACUGUGAGGGGAUCCUUAA

1 no match

3022 UUCUCAUCGUCGUAGAACAAGCC

10 Su(Ste)

3023 GAAUCAUGGAGAUGAUACCGAGCUUC

1

0 transposon

3024 UGUUUCAUCUUAGACGGCUCGGGUC

1 no match

3025 UAGAUCUUCACCGUUGACUUGGCCA

1

1 Su(Ste)

3026 UAUAAGGUUGGCCCAAGAACGCUGC

1

0 transposonLow̲complexity

F-element

3027 CAGCACACAGAGGAGAGCAGAGAGA

1 no match

3028 UGAUACCUAGAAUGACAAUGGUUGA

1

1 transposon

LTR

gypsy33029 CGAAAUAGAUCUUCACCGUUGACCUAGCCCCA

1 no match

Su(Ste)LTR

0 coding gene
0 transposon297

pseudogene
LINER1-element

Su(Ste)LINE

BS3
Su(Ste)3030 GAAUAUCGUCUCGGGAGUGAAAUACUCCAUCGUCGUAGAACAAGCCCGA 1 no match
3031 UGUUUCAUCGUUAGACGGCUCGGGGCCUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAAUGUUUCAUCGUUAGACGGCUCGGGC
1 no match
3032 UGCACCGGAACGACCAACCAGCCCA

1

0 transposon

3033 CGCCGUGGUCAACCUGGACGUCCCAGU

1

1 coding gene

LINE

Doc3

3034 UAGUAUCUUCUACCGUCGACUUGGCC

1 no match

3035 UACUGUUUGUAGGUGUACUGACCA

1

1 transposon

3036 UGCAACCCCCAACGACCACCCGCUGUU

10 coding gene3037 UCUCGAUCGUCGUAGAACAACCCCGA

1 no match

3038 CGCACACAGAGGAGAGCAGAUGAGGAGCA

1 no match

3039 CAAAGAAGCCCCGCCGCCGCCGCC

1 no match

3040 AUCUAGGCUGAGCGGAGAACCAGAGU

1

0 transposonLow̲complexity

F-element

3041 UUCGCUACCAGACGGGAUUACUCUG

1

0 transposon

LTR

ninja-Dsim-like3042 UCCUGACGAAGAUCGCAAGAAGAG

1

0 transposon

LTR

opus

3043 UCCGAGGAACCAAUUGAUCCAGCUCC

1

1 Su(Ste)

Su(Ste)3044 UAUGCUCUCGAAUGUAUGGCCCGAUA

1 no match

3045 UCUCAUCGUCGUAGAACAAGCCCCGAGCUGUAACGUCGGGUACAAU

1 no match

3046 CAAAAGUUGACCGAACUUGAUUAUU

10 ncRNA

rRNA

3047 UAAAAAGAUAAAAACCGAAUUACAAGAA

1

2 repeat3048 UGCUCGAUGAGAAGAAUGGCCCGUAA

1

1 transposon

3049 GCGACUCCAAGAGCGAUGUGCCGAA

1

0 coding gene

3050 ACCCUGUAGAUCCGAAUUUGUU

10 ncRNA

3051 AAAGGUAAUAUCCGAGUCGUUCCC

1

0 transposon

LTR

opus

3052 UCCAUCUUCUUCUCGACGUUGACCCA

1 no match

3053 GAAUAUCGUCUCGGGAGUGAAACUGUGAGGGGAUCCUCAA

1 no match

3054 UUGUGACUGAUCUAGAGUACAAUGU

1

0 transposon

LTR

DM88

3055 UCUGGUUGAACGUGUCCUGAAAG

1

0 Su(Ste)

3056 UAUCAUCAUCGUAGAACAAGCCCGU

1

2 Su(Ste)

3057 UCGGCCUGGAUCACGGACAUCUG

1

0 transposon

LTR

ninja-Dsim-like

3058 AUCGUCUCGGAUGAAAUGUUUCAUCGUUAGACGGCGUCGGGC

1 no match

3059 UAGGCUUACCCGGGGAUACAUAGU

1

0 transposon

LINE

Doc

3060 UAGAUCCACCGUUGACUUGGCCC

1 no match

3061 UUCAUCUUCUUCUCGACGUUGACCAG

1

0 transposon

LTR

ninja-Dsim-like3062 GCCCUUGAUUCCGAGGAGCCAAUU

1

1 Su(Ste)

Su(Ste)3063 AUCUCAUCGUCGUAGAACUAGCCCCGU

1 no match

3064 UCCUCAACUGUGAUGGAUCCUCAA

1 no match

3065 CGAAAUCUCAUCUCGUAGAACAAGCCCGA

1 no match

3066 CACUGUGAGGGGAUCCUCAA

1 no match

3067 CCAAUUGAUCCAGCUGCUGUUGUU

10 Su(Ste)

Su(Ste)3068 UGAAAUGGACCUGGAAGACGCCCCACC

1

0 coding gene

CG4266-RA¦CG4266

3069 GGAUCCUCAACUGUAAGGAA

1 no match

CG17957-RA¦Sry-alphaLINE

bagginsCG2098-RA¦ferrochelatase

trf
LINE

RR49783
CG13913-RA¦CG13913
mir-10-RA

Su(Ste)Su(Ste)3070 ACCCACCCUGAUGUGCUUGACGUU

1 no match

3071 UAGGAUCUUCACCGUUGACUUGGCCCCG

1 no match

3072 UGUUUUCAUCCGUUAGACGGCUCGGGUCA

1 no match

3073 AUCCUCAACUGUGAGGGAUCCUCAACUGUAACUCGGGGUCAAU

1 no match

3074 UCUCAUCGUCGUAGAACUAGCCCCA

1

1 Su(Ste)3075 GAAGAAUCCUGUGAGACCCAGAAAUCC

1

0 transposon

LTR

flea

3076 GAUGUCCACCAAAGGCAUGCCCGA

1

0 transposon

LTR

opus

3077 UCUCAUCGUCUUAGAACAAGCCCGAG

1

1 Su(Ste)

3078 AAAAUACUACAUCCGUACGUUAGAACCAAGCCCGA

1 no match

3079 CAGCACACAGAGGAGAGCAGAUGAGACGCAC

1 no match

3080 UUAUCGACUCGUGUACCUGGUUA

1

Su(Ste)Su(Ste)0 transposon

LTR

micropia

LTR

opus

3081 UCGAAAUUCUCAUCGUCGUAGAACUAGCCCGACUGUAACUCGGGGUCAAU1 no match
3082 UUCUCGAUCGUCGUAGAACAAGCCCGACG

1 no match

3083 UGGCAUUCGCGUCGAGGCCCAGGUAUA

1 no match

3084 UUCGAACUGAAGGAGUACGAAUGAGUC

1 no match

3085 CCUGCUGACGGGGCCCGAAAACACG

1

0 transposon

3086 UGUUUCAUCGUUAGACGGCUCCGGG

1

2 AT-chX

3087 GCACACAGAGGAGAGCAAGAUGAGAGCA

1 no match

3088 UCCGAGGAACCCAUUGAUCCAGCUGC

13089 CAGCACACAGAGGAGAGAAGAUGAGAGCA

1 no match

3090 CGAAAUCCAUCGUCGUAGAACUACGCCCGA

1 no match

3091 UAGAUCUUCACCGUUGACUACGCCCCC

1 no match

3092 AAUAUGCCAGAAUUUUUAUUGGGGGUUC

1 no match

3093 UGUUUCAUCGUUAGAAGGCUCGGG

1

1 AT-chX

3094 UUGUUUCGGAGCGUUGGCCAGUUUC

1

1 transposon3095 CAUGGAUUGGCUUGUUUUGUUCAGUUG

1 no match

3096 CUCUCAUCGUCGUAGAACUAGCCCGA

1

1 Su(Ste)3097 ACUGCUCAUUCCGAACAUACACCGA

1

0 transposon

3098 UCCUGAAGCCGGUGAUCGACAGUUA

1

1 coding gene

3099 GCUUCCGGGAUUUUGACGCCGUUAAU

10 transposon

3100 AAGGAUCAUGAUACCGACUAAAGGCAA

1

1 no annotation

3101 CGAAAUCUCAUCGUCGUAGAACAAGCCCG

1 no match

3102 GAGAGUGAUGCCGAGUAUAAAAGUAA

10 repeat3103 UAACAUCAUCAUCUGACUUGCAAUU

1

1 transposon

DNA3104 UCCUAAUCGCGAGCUUAUUGUUGUACC

1

0 transposon

LTR

diver23105 GGUCCUCAACUGUGAGGGGAUCCUCAA

1 no match

3106 UCUGAACGUACCACGGUGCCCCAGG

1

2 transposonLow̲complexity

F-element

3107 AAUAGGGACGGUCGGGGGCAUCAGU

1 no match

3108 CUCUCAUCGUCGUAGAAGAACGCCCG

1 no match

3109 CAGCACACAGAGGAGAGAUGAGAGCA

1 no match

3110 UCUCCAUCGUCGUAGAAUUAGCCCGA

1 no match

3111 UGGUUCAUCGUUAGACGGGACUACGGGCCCG

1 no match

3112 UUUCACAUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)3113 UGAUCUUCACCGUUGACUUGGCC

11 Su(Ste)

Su(Ste)3114 CUCUCAUCGUCGUAGAAACAACGCCCGUA

1 no match

3115 UCCGAUUUGGCGCAAAUAGAUGGAC

13116 UAAAGGUAUUCCUUGUCGAACGUCGUCUG

1 no match

3117 UGAUACCGAGAAUUACAAUGGUUGA
3118 AAACCUGAAGGUGAUCCUGAGUCGCA
3119 UCUCAUCGUCGUAGAACAAAGCCCCGA

1 no match

3120 UUAUACCCAGGUGAUUCCCACUAU

1

0 Su(Ste)

3121 GGACUUUUUUCCGAUGAGCCAGU

1

0 transposon

3122 UGUUUCAUCAGACGGCUCGGGC

1 no match

3123 GAUCUCAACUGUGAGGGGAUUCUCAA

1 no match

3124 GUUCACCGGACGGGCCUAGGGAACU

1 no match

3125 UCUCAUCUUCGUAGACAAGCCCGA

1 no match

3126 UUUUUCAUCGUUAGACGACUCGGGC

13127 UAGAUCUUCACGUUGACUUGGCCCU

1 no match

3128 AUCGUCUCGGGAGUGAAAUGUUUCAUCGUUAGACGGCUCGGGC

1 no match

3129 CAAGGUGGAAAUGAAGAAAGUACA

1 no match

3130 CCCAGGCAGUGGGGACUCCAGAUUCC

1

0 transposon

LTR

Tabor

3131 UCGGUGGGCGAAGAGUUGAGUGG

1

0 transposonLow̲complexity

F-element

3132 UGACGAGAACUCGAGCCGCGUAGCC

1

0 no annotation

3133 GUUCCGGGGGAAGUAUGGUUGCAAAG

1

1 ncRNA

3134 UCCUAGAAAAAACGAGGUUCACCCAA

1

0 transposonLow̲complexity

F-element

3135 AAAGACACCGUUUCCCGUCCGAUCAA

1 no match

3136 UAACCGUUCGUUGGCGUUGAUGGCA

1

0 transposon

LTR

HMS-Beagle

3137 AAGAAAGCACCGUUUCCCGUCCGAUCAA

1 no match

3138 CAACCGGACGGGCCUAGAGUUAU

1

0 coding gene3139 UUCUGACGAGAACUCGAGCCGCGUAGC

1

0 no annotation

3140 UGUUUUCUAUCGUUAGACGGCUCGGGC

1 no match

3141 CUCGGGAUCAAGGGCAACGAGUAA

1

2 Su(Ste)

3142 CUAUAACUCGGGUCA

1

1 transposon

LTR

gypsy83143 AUUGGCAUUUAUUUAUGCAUCCCGUU

1

1 transposon

LTR

Stalker

3144 CAGGCACGACAGAGGAGAGCGAGAUGAGAGCA

1 no match

3145 UCUGGAUACUAGGUAUCGACGCCGAUA

1

0 no annotation

3146 UCUGAAGACCCCGACGGUUAUGCA

1

0 transposon

3147 UUCUUUUGAAGAUGGCCCACAUAAAG

1

2 repeat3148 UUGAUACGAAUGAGACCCGCAGUA

1

0 repeat3149 ACCAGGACGGGUGACGCAUAAGUUU

1

0 transposon

LINER1-element

3150 UCUCAUCGUCGUAGAAGAGCCCCGA

1 no match

3151 UAAUGCCUAACGAGGUAGAUGACUC

1

0 transposon

LINE

Cr1a

3152 UCGGUUGCCCACUUACAGGCCCAAA

1

0 transposon

LTR

ninja-Dsim-like

AT-chX-B

0 no annotation

AT-chX-B
Low̲complexity

F-element
Su(Ste)LINEDoc
CG42398-RA¦SteXh:CG42398

LTR

opus

trf
1360

2 transposon

LTR

ninja-Dsim-like

1

1 transposon

LTR

gypsy31

1 transposon

LINE

HelenaSu(Ste)LINE

2 AT-chX

G2AT-chX-B

rRNA

CG40635-RA¦CG40635

Su(Ste)

LTR

297
trf
trf

3153 UCCUGAAGCCGGUGAUCGAUAGUUCC

1

0 repeat3154 GAAGAAUUGUAGGUUAUAGCCGUAGAG

1

1 ncRNA

3155 UUCGAUUACCUGGUUCGAUCCAAU

1

0 transposon

3156 UUCUCGAGGAACAGUUUGACGAGCUA

1

0 coding gene3157 UUUGUAGGUGUACGGCCCAGUCGG

1 no match

3158 UCGUCAGUCGUCGUAGAACAAGCCCGGACU

1 no match

3159 UUUAUCCGAAAUCGUGUUCGAGUU

13160 AUCGCUCGGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGGC

1 no match

3161 UAGGUUAUGGGCCCAGUGAACAUU

13162 UCCAGUCGUCGUAGAACAAGCCCGACUG

1 no match

3163 UCGAGUUGCAGAAUUGAGGACCCCGUC

1

1 transposon

3164 GCCCCAGUUGCCUAAUGGAUAAGGC

1

1 ncRNA

3165 AAAUAGGGGACGGGUCGGGGGGCAUCAGU

1 no match

3166 GAAUAUCGUCUCGGGAGUGAAAACUUACGGGAGUAAGGAUUGGCUCUG

1 no match

3167 UUAUAAGGAUGAUGAUACCGAUUAAAG

13168 AUCGUCUCCGGGAUCGAAAUAGAUCCUUCACCGUUGACCUUGGCC

1 no match

3169 AUCCUUCAACUGUGAGGGGAUCCUCAA

1 no match

3170 AUCUCAUCGUCGUAGAACAAAGCCCCGAGG

1 no match

3171 UUGAUCUUCACCGUUGACUAGCCCA

1

2 Su(Ste)

3172 UUGGACUUUUUUCCGAUGAUCCAGU

1

1 transposon

3173 CACGUCAGUUCGGAUGCCUACUACCGG

1 no match

3174 UAUACACCGGCAAGAACAAAACGA

13175 UCUCGUCGUCGUAGAACAAGCCGA

1 no match

3176 AUUCUCAUCAUCGUAGAACAAGCCCGA

13177 CAACUGUGAGGAGAUCCUCAA

1 no match

3178 UUCUCAUCAUCGUAGAACAAGCCCG

13179 UGUUUUCAUCGUUUAGACGGCUCGGGU

1 no match

3180 UAGAUCUUCUUCGUUGACUAGCCCCA

13181 GAAAAGCACCGUUUCCCGUCCGAUCAA

1 no match

3182 UAGCUGGCCGAGUAUUUGAUAUUCUUU

13183 UCAACUGUGACUCAACUGUGACUCAA

1 no match

3184 GAAGACCCUGUUGAGCUUGACUCU
3185 CUCUCAUCAUCGUAGAACUAGCCCGA

0 transposon

trf
pseudogene
LTR

Dm88
CG9279-RA¦CG9279

LTR

1 ncRNA

micropiaalphagamma-element

LTR

QuasimodotRNA

0 no annotation

Su(Ste)LINE

G2

0 repeat

HETRP̲DM

1 Su(Ste)

Su(Ste)0 Su(Ste)

Su(Ste)2 Su(Ste)

Su(Ste)0 Su(Ste)

Su(Ste)1

1 repeat

LSU-rRNA̲Dme

1

2 Su(Ste)

Su(Ste)3186 UAGAUCUGCACCGUUGACUAGCCCC

1

1 Su(Ste)

Su(Ste)3187 AAAUCUUCGUCGUAGAACAAGCCCGA

1 no match

3188 UAAAUGCCAGAACUUUAUUGGGGUUC

13189 UUGUAUGUGGGGUAGGGGAGCGUU

1 no match

3190 UGUUUCAUCGUUAGACGGCUCGGGCCUA

13191 UAAAGAAAUCCUGACAAGAUCCCGG

1 no match

3192 GUUCUUUGAAGAUGGCCACAUAAAG

1 no match

3193 UCUCAUCGUCGUAACAGCCCGA

1 no match

3194 UCCGAGGAACCAAUUGAUUCAGCUG

13195 CUCUCAUCCGUCGUAGAACAACGCCCGU

1 no match

3196 CAGCACACAGAGGAGAGCAGAUGAGAACA

1 no match

3197 GCAUAUAAUGCCCGAAGGUUGCCC

12 transposon

3198 GAUGCCAUCAAGCGCACUGAUUAACCGA

1

0 no annotation

3199 GAAAUCUCAUCGUCGUAGAACAAGUCCCGAACUC

1 no match

3200 GUAGAUCUUCACCGUUGACUAGCCCCG

13201 CGAAAAAACCUGAAGAUGAUCCUCGAGUCGC

1 no match

3202 GGAUCCUCAACUGUGAGGA

1 no match

3203 UCAUGACCGAAAUUCGAAAAAACGAA
3204 UUCUCAACGUCGUAGAACAAGCCCGA

0 transposon

LINEbaggins

2 AT-chX

AT-chX-B

0 Su(Ste)

Su(Ste)LINE

R1-element

1 Su(Ste)

Su(Ste)1

1 repeat

SAR̲DM1

1 Su(Ste)

Su(Ste)3205 CUCGCUGAGAGCUGAGAGCCCGCA

10 ncRNA

alphagamma-element

3206 UGUCUCAUCGUUAGACGGCUCGG

1

1 AT-chX

AT-chX-B

3207 AUCGUCGUCGGGAUAGAAAUCUUAUCGUCGUAGAACAAGCCCGA

1 no match

3208 AAAGGUGGGAAUGAAGAAAGUACA

1

2 no annotation

3209 UAGAUUUUCACCGUUGACUUGGCCCA

1

1 Su(Ste)

3210 GUAUGACCCCUGGUACUGAAAUG

1

0 transposon

DNA

Bari1

3211 UCAACUGUGAGGUGAUCCUCCAA

1 no match

3212 UGCCUAUCUUGAGCGGCGAGGACC

1

0 transposon

LINE

Cr1a

3213 CCUGGAUGAUGAUAAGCAAAUGCUGA

1 no match

3214 UAACAAGAUGCAUACGAUCGUGGC

1 no match

3215 UUCCGCAUGUGAAUGUUGGCCCCAGA

1

0 no annotation

3216 UCCGAACGUACCACGGUGCCUCAGU

1

1 transposonLow̲complexity

F-element

3217 AUCUUCAUCGUCGUAGACAGCCG

1 no match

3218 AUCGCAUCGUCGUAGAACAAGCCCGAGG

13219 UCUCAUCGUCGUAGAACAAGCCCGCUGUAACUCGGUCAAU

1 no match

3220 AGAUCUUCACCGUUGACUUGGCCCAU
3221 UGUCUCAUCGUUAGACGACUCGGGC
3222 CAGGCACGACAGAGGAGAGCGAGAGUGAGAGCA

1 no match

3223 UGUUUCAUCGUUAUACGGCUCGGA

1

2 AT-chX

3224 CGCGACGACGCCGAGUGGAAUCCAGG

1

0 transposon

LTR

ninja-Dsim-like3225 CAACACAGAGGAGAGCAGACGAGAGCA

1 no match

3226 AGCACACAGAGGAGAGCAGAUGAGAGCAA

1 no match

3227 UUGUACUACCCCUUCAUGACUCAAAGA

1

0 transposon

LINE

Fw2

3228 CAAACAUUAGCUCCGAUCUCCUGAGU

10 transposon

LINER1-element3229 CAGCACACAGAGGAGACAGAUGGAGCA

1 no match

3230 CCCGAUGAGAAGAAUGGCCCGUAAA

1

0 transposon

LINE

RR49783

3231 GGUGGAAAUGAAGAAAGUACAAA

1 no match

3232 GAGGAGGAUCCUCAA

13233 GGAUCCUCAAUUGUGGGGGGAUCCUCAA

1 no match

3234 UGGACUUUUUUCUGAUGAGCCAGU

13235 AUCUCAUCGUCGUAAAAACAAAGCCCGAC

1 no match

Su(Ste)1 Su(Ste)

Su(Ste)1

1 Su(Ste)

Su(Ste)1

2 AT-chX

AT-chX-B
AT-chX-B

1 coding gene
1 transposon

CG13685-RA¦CG13685
LINE

G2

3236 CGAGCAAUCAUCCAAGGCUGAGAUCCGG

1

0 transposon

LTR

mdg3

3237 UAGAUUGGACCCAGUACACUGCC

1

1 transposon

LINE

Doc

3238 UGUUUCAUCGUUACGGCUCGGGC

1 no match

3239 GCCCGAUCAGAAGAAUGGCCCGUAAAG

1

1 transposon

LINE

RR497833240 CGUUCCCGUCUCGUGCUAAAGGGUUGAC

1 no match

3241 UGUUUUCAUCGUUUAGACGGCUCGGG

1 no match

3242 CGAAAUAGAUCUUCACCGUUGACCUAGCCCC

1 no match

3243 ACUACCGAGCCCGAGCCUUACUCGAC

1

0 transposon

LTR

Rt1c

3244 UCUCAUCUUCGUAGAACAGCCCGACUGUAACUCGGGGUCAAU

1 no match

3245 AUCGGGCUUUCGUGACGAGAACUCGAGGC

1 no match

3246 UAGGAUCUUCACCGUUGACUAGCCCCG

1 no match

3247 CUGACGAGAACUCGAGCCGCGUAG

13248 UGUUCAUCGUUAGACCGGCUCGGG

1 no match

3249 UAAGCGUUCGUUGACGUUGAUGGCUG

10 transposon

LTR

HMS-Beagle

3250 UGCUCCGCUAUGCUAGCUCCCGUA

1

0 coding gene

CG5827-RA¦RpL37A

3251 UCUCAUCGUCGUAGAACUAGGCCCGA

1 no match

3252 UACUUACAGUGGGUUGUCCAGGG

1

0 Su(Ste)

Su(Ste)3253 UCUCAUCGUCGUAGAACAAGCCCGCUA

1 no match

3254 UCUCAUCGUCGUAGAAACAAGCCCGAGG

1 no match

3255 CUCGGGAUGAAAAUCCUCAA

13256 AUCUCAUCGUCGGUAGAACAAGCCCGA

1 no match

3257 UGUUUCAUCGUUAGACGGCGUCGGGCG

1 no match

3258 AAUAAGAAGUUGACCGAACUUGAU

1 no match

3259 GCACACGAGAGGAGAGCAGAUGAGAGCA

1 no match

3260 UGCCCCGUACUCUGUGGUGACCGA

1

1 transposon3261 UGUUUCAUCGUUAGACGGCACGGGCG

1

1 AT-chX

3262 UCUCAUCGUCGUAGAAGAAGCCCGACUGUAACUCGGGGUCAAU

1 no match

3263 AUCUCAUCGUCGUAGAACAAGCCCCGAGG

1 no match

3264 UGUACUACCCCUUCAUGACUCAAA

13265 UCUCAUCGUCGUAGAACAAAGCCCG

1 no match

3266 UGCAAAGACGAAGUGCGCCCCGAU
3267 UCGCAUCGUCGUAGAACAAGCCCA
3268 GUCUACGCCGAGGCCAACCUCUU

1 no match

3269 CUCAACUGUUAGGGAUCCUCAA

1 no match

3270 AUCGGUCUCGGGGAUGAACAGCACGACAGAGGAGAGCAGAUGAGAGCA

1 no match

3271 UUCAACGGUUACCCCAGGAUGCUGU

1 no match

3272 UCCGACGCUCUUGACUCGACCAGG

13273 AUCGUCUCCGGGAUGAACAGCACACAGAGGAGAGCAGAUGAGAGCA

1 no match

3274 UCAAGGUAGUAACUAUGACGAUUUGACUGUAACUCGGGGUCAAU

1 no match

3275 UACUCAUCGUCGUAGAACAAGCCCGC

12 Su(Ste)

3276 UACUGUCCCUUAAAUCAGCACUCGU

1

0 no annotation

3277 CUACUAACUGUGAGGGGAUCCUCAA

1 no match

3278 AAUUAAUGCCGGAAGCGAUCCCACU

1

0 AT-chX

3279 AGCCCGAUGAGAAGAAUGGCCCGUAAA

1

1 transposon

3280 UUGACAAUUCCAAGGCUGAGAUCCGG

1 no match

3281 AGAAAAAGGUGGAAUGAAGAAAGUACA

1 no match

3282 UACUUGUUCCCCGGAUAGUUUAGUUA

10 ncRNA

3283 UCUACUUCCCACCUAGACACUCGA

1

0 transposon

3284 GGAUCCUCAACUGGUGAGGGGAUCUCAA

1 no match

3285 CCUCAACUCGUUAGGAA

13286 AUCGUCUCGGGACUGAAAUAGAUCUUCACCGUUCGACUAGCCCA

1 no match

3287 CGAAGGAAAACCUGACCGGACCUAU

13288 UCUCAUCGUCGUAGAACCAAGCCCGA

1 no match

3289 AUUGAUCCAGCUGCUGUUGUUGU
3290 UCUAUAGGAAAAACCUAGUUACUUACG
3291 UUCAACUGUGAGGGAUCCUCAA

1 no match

3292 UCGGUGGCGAAGUUGGCUCAGAGG

1

0 transposon

LTR

3293 UCUUGUUUCAGAGCGUUGGCCAG

1

0 transposonLow̲complexity

3294 UCUCUAUCGUCGUAGAAGAAGCCCGA

1 no match

3295 UACCGGUAUAGCACACUUUUGUAUAA

13296 CGUCCGGGAUGAAAAUCCUCAA

1 no match

3297 AAGGUCAACUGUGAGGGGAUCCUCAA

1 no match

3298 UUCCGAGGAACCAAUGGAUCCAGCU

1

1 Su(Ste)

3299 UCCGUCUUUGAGAGGAAUCAGAUGG

1

0 transposon

3300 GGUUGUAAACCUCUUUCUAGGGACGAAG

1 no match

3301 AAAACCUAGUUACUUACGGGCUCGA

13302 UUCUCAACUGUGAGGGGAUCCUCAA

1 no match

3303 AUAAGGGAGUCGGCAAAAUAGAU

1 no match

3304 AUAGAUCUUCACCGUUGACUAGCCCCU
3305 UCAACGUCGUAGAACAAGCCCGAA

0 no annotation

2 no annotationLINEbaggins
AT-chX-B

0 transposon

LINE

Fw2

1

0 transposon

LTR

ninja-Dsim-like

1

1 Su(Ste)0 transposon

Su(Ste)LTRninja-Dsim-like

Su(Ste)AT-chX-B
LINE

RR49783

rRNA
LINE

G2

0 no annotation
1 Su(Ste)

Su(Ste)10 Su(Ste)

Su(Ste)10 Su(Ste)

Su(Ste)2 coding gene

297
F-element
CG41580-RA¦CG41580

Su(Ste)LTR

opus

0 Su(Ste)

Su(Ste)12 Su(Ste)

Su(Ste)1

1 Su(Ste)

Su(Ste)3306 UCUCUCGUCGUAGAACAAGCCCGA

1

2 no annotation

3307 AUACUCUGACUCUGUGCUGCUUAGG

1

0 transposon

LTR

3308 UAACAAGAUGCGUUACGCCAUACGA

1

0 transposon

DNA3309 AGAUCUUCACCGUUGACUAGCCCCUC

1

1 Su(Ste)

3310 UAAAUGCCAGAAUGUUAUUGGGGUUC

1

1 transposon

3311 GAUUCCGAGGAAUCUGGGUUCAAGA

1 no match

3312 CGUAACUUCGGGAUAAGGAUUGGCUCUA

1

1 ncRNA

rRNA

3313 UUUAAUGCCGGAAGCGAUCCCA

1

1 AT-chX

AT-chX-B

3314 AGCUGGCCGAGUAUUUGAUAUUCUU

1

0 Su(Ste)

3315 UAACGACCAGACAUACGGCAUUAU

1

1 transposon3316 UCUCAUCGUCGUAUAACGAGCCCGA

1

2 Su(Ste)

3317 UCCGUCGAGGUGGUGGUGCGAUC

1

0 transposon

LINE

R1

3318 GCCGAACGUAGUCUCUCGAGAACG

1

1 transposon

LTR

invader1

DM88
1360
Su(Ste)LINEbaggins

Su(Ste)LINE

R1-element
Su(Ste)3319 AUCUCAUCUUCGUAAGAAACAAGCCCGA

1 no match

3320 UUCGUCAUCGUCGUAGAACAAGCCCGG

1 no match

3321 CAGCGACACAGAGGAGAGCAGGAUGAGAGCA

1 no match

3322 UCUCAUCGUCGUAGAACAACCCCGAG

1

1 Su(Ste)

Su(Ste)3323 CUGUUUCAUCGUUAGACGGCUCCGG

1

1 AT-chX

AT-chX-B

3324 CAGCGACACAGAGGAGAGCAGAUGAGAGCA

1 no match

3325 AUAAGAUCUUCACCGUUGACUAGCCCCCUGUAACUCGGGGUCAAU

1 no match

3326 CAACUGUGGAGGGGAUCCUCAA

1 no match

3327 UAAUGCCCCGAAGGUUGCCCUCUGUG

10 transposon

LINER1-element3328 UCUCAUCGUCGUAGAACAAGCCCCGACUGUAACGUCGGGUCAAUAUCGUCGUCGGGAUAGAAAUCUCAUCGUCGUAGAACAAGCCCGA
1 no match
3329 GCUAUGAUAUACCGGACAGUGUGCAA

13330 UCCUGUGAGGGGAUCCUCAA

1 no match

0 transposon

LTR

gypsy123331 UCUCGAUCGUCGUAGAACAAGCCCGGCG

1 no match

3332 CCGCCGCCCAGUCCUGCUCGCUUCACC

1 no match

3333 UUUUCCUGAAAUCCGAGUUAAUAUG

1

1 no annotation

3334 UUUUCAUCGUUAGACGGCUCGUGC

1

2 AT-chX

AT-chX-B

3335 UGUUUCAUCGUUAGACGGCUCGGGUCAAU

1 no match

3336 UCUCAUCGUAGUAGAACUAGCCCGGG

1

2 Su(Ste)

Su(Ste)3337 UUCAUCGUCGUAGAACAAGCCCGACG

1

1 no annotation

3338 UUCUGACGAGAACUCGAGCCACGU

1

1 no annotation

3339 UCCAAAGGACUACGAAAAACUCUUGA

1 no match

3340 CAAGAUAUUACCAAAGCAAAGACAC

1

1 transposon

LINE

Cr1a

3341 UAAAUGCCCCGAAGGUUGCCCUCUG

1

2 transposon

LINER1-element3342 UAAAAUGCCAGAAUUUUAUUGGGUUC

1 no match

3343 UCCUCAACUGUGAGGGGUUCCUCAA

1 no match

3344 AUCGUCUACGGGAUGAAAUAGAUCUUCACCGUUGACUAGCCCCA

1 no match

3345 AUCGUCUCGGGACUGAAACUCUCAUCCGUCGUAGAACAACGCCCGA

1 no match

3346 UCUCAUCGUCGUAGAACAAGCCGUG

1 no match

3347 UGUUUCAUCGUUAUACGGCUCGGGCA

13348 CAGCACACAGAGGAGAGCAGAUGAGAGCUA

1 no match

3349 UAGAUCUUCACCGUUGACUAGCCCCUC

1

2 AT-chX

AT-chX-B

1 Su(Ste)

Su(Ste)3350 UGUUUCAUCGUUAGACGGCUCGGGGCUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA
1 no match
3351 UUGUUUCAGAGCGUUGGCCAGUUUCC

1

0 transposon3352 UCUAUCGAAGAAUCGCGGAUGUGAC

1

0 no annotation

Low̲complexity

F-element

3353 UGUUUCAUCGUUAGACGGCUCGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA
1 no match
3354 AUUGACCGAGUUACAGACGGGCGGUUGUUCGUACGAACGGAUGAGAGUUUCAGUCCCGAGACGAU
1 no match
3355 CAGCACACAGAGGAGAGCAGAAGAGAGCA

1 no match

3356 CAGCACACAGAGGAGAGCAGAUGAAGC

1 no match

3357 UAAAAAGCGCUUUGCCAUGCUGGAC

1

0 coding gene3358 AAAUUAUAAGGAUGAUGAUACCGAUU

1

0 no annotation

3359 UUUCUGGAGAACUCGAGCCGCGUAG

1 no match

3360 UCUCAUCCUCGUAGAACAGCCCGA

1 no match

3361 UCUCCAUCGUCGUAGAACAAGCCCGACUGUAACCUCGGGUCAAU

1 no match

3362 AUAUCAUUCACGCCACGCUCCGACC

13363 UCUCAUCGUCGUAGAAGAAGCCGAU

1 no match

3364 CAAUGUACUGUUUGUAGGUGUACUGACCCAG

1 no match

3365 AUCGUCUCGGGGAUGAAAGGACCUCAACUGUGAGGGGAUCCUCAA

1 no match

3366 CCCCUGAUGAAGAGAGAUGCCCAGUA

1 no match

3367 GCAUAUCAUUCACGCCACGCUCCGACCU

13368 UGUUUCACCUUAGACGGCUCGGG

1 no match

3369 CUGACGAGAACUCGAGCCGCGUAGC

13370 UCUCGGGGUGAAAGGAUCCUCAA

1 no match

3371 UCCUUGCAGGUUGCUGAUCGAUGACCACUGUA

1 no match

3372 UUCACGCCACGCUCCGACCUGAU

1

0 Su(Ste)3373 UAAAUGUCGUCCCGGAUACAUUGUC

1

0 transposon

LINE

Rt1b

3374 UCCGUUCCCUUGCGAUGCUCGAUU

1

1 transposon

LTR

G4

3375 UCCGAAGUCUGAUACACAGCUGGACG

1

0 repeat3376 UCUCAUCGCCUAGAACAAGCCCGA

1 no match

3377 UCUAUGCUUGUUGCUACAGGGCCAA

1

0 transposon

3378 UAAUGCCAGAAUUUAUGGGG

12 coding gene

CG8256-RD¦Gpo-1

3379 AUCUCAUCGUCGUAGAACAAGCUCGA

1

2 Su(Ste)

Su(Ste)3380 GUCUCGGGGAUGAAAGGAUCCUCAA

1 no match

3381 UGAGCGAGUGAGAGAGAAGCAA

1

0 coding gene3382 AACUGAAGGAGUACGAAUGAUCG

1

0 transposon

LINE3383 UGAGAAAGGACAGCCCCGAGGGCCAA

1

0 transposon

LTR

3384 GUCUUCUAUCGUCGUAGAACAAGCCCGUCUGUAACCUCGGGUCAAU

1 no match

3385 UAGAUCUUCACCGUUGACCUGCCCCGAC

13386 GCCGGUCGAGAGAUAUCGGAAGAGGUU

1 no match

3387 UUCCGAGGAACCAACUGAUCCAGCUG
3388 UGUUUCAUCGUAAGACGGCUCGGGC

CG10843-RA¦Cyp4p3

0 Su(Ste)

Su(Ste)0 Su(Ste)

Su(Ste)0 no annotation

Su(Ste)trf
LTR

invader2

CG3412-RA¦slmb
R1-element297

2 Su(Ste)

Su(Ste)1

1 Su(Ste)

Su(Ste)1

1 AT-chX

AT-chX-B

3389 UGAUUAAAGCCUUCGCGUCUUCCACGAC

1

0 AT-chX

AT-chX-A

3390 UCUCAUCGUCGUAGAAGAAGCUGA

1 no match

3391 AAUUCCCAAUGCUUUGCGACGGCGCA

1 no match

3392 UCUCAUCGUCGUAGAACAAGCCCGCUC

1 no match

3393 AAUGGAGGGGAUCCUCAA

1

2 no annotation

3394 CGUUGACCAAUUUCCGAACAUAAAA

1

2 transposon

3395 UCGUCAUCCGUCGUAGAACAAGCCCG

1 no match

3396 UCUCAUCGCCGUAGAACAACGCCCCGA

1 no match

3397 AAAACCUAGUUACUUACGGGCUCGACA

1

0 Su(Ste)

Su(Ste)3398 UGUUUCAUCGUUAGACGGCUCGGGCCU

1

2 AT-chX

AT-chX-B

3399 AUCGUCGUCGGGAUAGAAACCUCAUCGUCGUAGAACAAGCCCGA

1 no match

3400 UGUUUCAACGUUAGACGGCUCGGG

1

1 AT-chX

3401 UGCCCGAUGAGAAGAAUGGCCCGUAA

1

0 transposon

LTR

Dm88

AT-chX-B
LINE

RR49783

3402 AUUGACUGAACGAUUCCUUUUGGA

1

0 transposon

LINE

G5

3403 UAUCUAGAGACCGAAGAUAGUUGAG

1

0 transposon

LTR

opus

3404 UACCCAACCGAAGACACCGGCCCAA

1

2 no annotation

3405 ACCACCUUGACGGAGCUCACGUACC

1

0 transposon

LINER1-element

3406 UCUCAUCGUCGUAAAAGAAGCCCGA

1

2 Su(Ste)

3407 UCUAAUCGUCAUAACAAGCCCGA

1 no match

3408 UGCAAUGAAGUGUGGCCCUAGUGCU

1

0 transposonLow̲complexity

F-element

3409 AAUUGAAAUGAAGCCGGCAAUGCCCA

1

1 transposon

LINEbaggins

3410 ACAACAGAGGAGAGCAGAUGAGAGCA

1 no match

3411 GAUUCUUGAGAAUUUGGACGCCGUU

1

0 transposon

LINE

Cr1a

3412 GCUCCGAAAACAAGGCCCGUCGCU

1

0 transposon

LINE

G6

3413 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACCUCGGGUCAA

1 no match

3414 AAAUGUUUUCAUCGUUAGACGGCUCGGG

1 no match

3415 CAUAUCAUUCACACCACGCUCCGA

1

Su(Ste)0 Su(Ste)

Su(Ste)3416 UCGCAUCGUCGUAGAACAAGCCCCGCUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAAUGUUUCAUCGUUAGACGGCUCGGG
1 no match
3417 UCUCAUCGUCGUAGAACAAGCCCGUAA

12 Su(Ste)

Su(Ste)3418 UACUCAUCGUCGUAGAACAAGCCCGAGG

1

1 Su(Ste)

Su(Ste)3419 UCUCAUCGUCGUAUAACAACCCCGA

1

2 Su(Ste)

Su(Ste)3420 UCCAUUGGAUGAUCACAGCACAACUGACC

1

0 coding gene3421 UCAAAAUACUUAUGCGAGCACCCGUUC

1

0 transposon

3422 CUGUUUCAUCGUUAGACGGCUCCGGCC

1

2 AT-chX

3423 UCACCCUGAGUGCGACCAACGGCA

1

0 transposon

LTR

opus

3424 CCCGAAAACACGAGAGCCGAGAACUGUAACUCCGGGUCAAU

1 no match

3425 CAACCGUGAGGGGAUCCUCAA

1 no match

3426 AAAACCACCGUUUCCCGUCCGAUCAA

1 no match

3427 CAGCACGACAGAAGGAGAGCAGAUGAAGAGCCA

1 no match

3428 ACCACCCUGAACGCGCCCGAUCUC

1 no match

3429 AAAUAGACCUGGGCUUGUCAGCGGA

1

0 transposon

LTR

GATE

3430 CUGUAACUCGGGAUAAGGAUUGGCUCU

1 no match

3431 UAGAUCUUCACCGUUGACAGCCCCGA

1 no match

3432 GAAUCCGAAGUUUGAACGUGGGAACG

1

0 transposon

LTR

IdefixCG32217-RA¦Su(Tpl)
LTR

opus
AT-chX-B

3433 AUCGUCUCGGGACUGAAACUCUCAUCCGUUCGUACGAAACAACGCCCGUA1 no match
3434 UCAUCUUCUUCUCGACGUUAGACCA

1 no match

3435 UUAAGAAGAUGUCCGGGAAGCUG

1

0 Su(Ste)

Su(Ste)3436 UAGAUCUUCACCGUUGACUUUCCCCA

1

1 Su(Ste)

Su(Ste)3437 ACCUCAACUGUGAGGGAUCCCUCAAA

1 no match

3438 UGUACUGACCCAGUCGGAUCUAUUGUAC

13439 UCCUCAUCGUCGUAGAACAAGCCCCG

1 no match

3440 UUUCCGCGAGAAAAACCCGAUGGGA

1

0 no annotation

3441 ACCACCACCUGUACUCUGACUCCGAGG

1

0 transposon

3442 AACCUGACCGGUAGGCUAAACAAGU

1

0 coding gene

CG2033-RA¦RpS15Aa

3443 UCUCAUCGUCUUAGAACAAACCCGA

1

2 Su(Ste)

Su(Ste)3444 AUCUUAUCGUCGUAGAACAAGCCCGACUAGUAACGUCGGGUCAAU

1 no match

3445 CUCCAUGCAGCAGAAGCGACAGAGU

13446 CUGUAACUCGGGGUCAAAUAAAAAAAAAAA

1 no match

3447 AAUCCUCAACUGUGAGGGAUCCUCAACUGUAACGUCGGGUCAAU

1 no match

3448 GCGUCGCUACCAGACGGGAUUACUCUG
3449 UCAGCAGACGAAGACCGGCCACCC
3450 UACAAGAUGCAUACGAUGUGGCCUGUAACUCGGGGUCAAU

1 no match

3451 CUGUAACUCGGGGUCAAUGGGUCAAU

1 no match

3452 GCCGAGAUAUGCUGCGAGUUGCCAA
3453 UCUCAUCGUCGUAGAACUAGCCCGGA
3454 UGGAUACCGAGAAUGACAAUGGGUUGA

1 no match

3455 ACUGUGAGGGUAUCCUCAA

1 no match

3456 UGUUUCAUCGCUAGACGGCUCGG

13457 UCUCACUCGUCGUAGAACAAGCCCGUA

1 no match

3458 UGAAAGGAAUGCCCGACGUGCCAA

13459 GGGGACUGUGAGGGGAUCCUCAA

1 no match

3460 UACUGUUUGUAGGUGUACUGGCCC3461 CGUUUCAUCGUUAGACUGCUCGGG

0 transposon

LINEbagginsLINE

R1-element

0 transposon

LINEbaggins1

0 transposon

LTR

ninja-Dsim-like

1

0 transposonDNA

hopper2

1

0 transposon

Simple̲repeatI

12 Su(Ste)

Su(Ste)1 AT-chX

AT-chX-B

0 transposon

LTR

ninja-Dsim-like

1

0 transposon

LINEbaggins

1

2 AT-chX

AT-chX-B

3462 UGUUUCAUCGUUAUACGGCUCGG

1

1 AT-chX

AT-chX-B

3463 UGUUUCAUCGUUGGACGGCUCGG

1

1 AT-chX

AT-chX-B

3464 ACCUCAACUGUGAGGAUCCUCAA

1 no match

3465 AUUCUCACUCGUCGUAGAACUAAGCCCCGA

1 no match

3466 GUGAGGUCUCCGGACGUGAUCACUGUGAC

1

0 ncRNArRNA

3467 CUCAACUGUGAGGGGAUCCUCUAA

1 no match

3468 AUCGUCUCGGGAGUGAAAUCUCUAUCGUCGUAGAACAAGCCCGA

1 no match

3469 AGGGAAUCCUCAACUGUGAAAA

1 no match

3470 ACCCCUUAGGCGAGUUAGCGAAGCUGGCC

1 no match

3471 GAUCUUCACCUUUGACUUGGCCCA

1

1 Su(Ste)

Su(Ste)3472 UAGACCUUCACCGUUGACUUGGCCC

11 Su(Ste)

Su(Ste)3473 AUCGUCUCGGGGAUGAAAAUCAACUGUGAGGGGAUCCUCAA

1 no match

3474 AUCGUCUCGGGACUGAAACUCUCAUCGUCGUAGAACAACGCCCGUA

1 no match

3475 UAAGACCCAAUCUAUGUGCUUAACAU

1

0 transposon

LTR

gtwin

3476 CAAGAUAUGACCAAAGCAAAGACACCUG

1

2 transposon

LINE

Cr1a

3477 UCUCGAUCGUCGUAGAACAAGCCCGACGUGUAACGUCGGGUCAAU

1 no match

3478 UCUCAUCGUCGUAGACAAGCCCG

1 no match

3479 UAUCAUGUGAAAUUUGUGAACCCUGUU

10 transposon

LTR

copia

3480 GUAAUUGGGCCCGAACCUUCUGGUG

1 no match

3481 UCUCAUCGUCGUAGCAAGCCCGA

1 no match

3482 UCGAACACCGGCUUCAGGAUCACGUC

10 Su(Ste)3483 CCCAAACCCAGACCGGCCACCCCUU

1

0 transposon

3484 CUCAAUGUGAGGGGAUCCUCAA

1 no match

Su(Ste)LINE

G2

3485 UCUCAUCGUCGUAGAAUAAGCCCGACGG

1 no match

3486 UCUCAUCGUAGAACAAGCCGA

1 no match

3487 UUCCUGUUGAUGUGAGGGCCCCAAGUC

13488 UACAAUCUCCGAGCACGACCCCCGAUCU

1 no match

3489 CCUCAUCGUCGUAGAACAAGCCCAA

13490 UGAUCCGAUAUUCUUCUGCUGCAACC

1 no match

3491 AUAGAUCUUCACCGUGGACUAGCCCCC

1 no match

3492 UAAGGAUAUCCCUGUUGCCCGCCCGA

1

1 transposon3493 GAUAACGAGACCGGAUAUUCCUGC

1

0 coding gene3494 GGCUCAACUGUGAGGGGAAUCCUCAA

1 no match

3495 AUUCGAAAGGAAGGAGGCCACAAUCU

1

1 coding gene3496 AUAACUCCGAGGGAGGGUGAAACCAUC

1

1 transposon

LINER1-element3497 GUGUUUCAUCGUUAGACGGCUCGGGCCU

1 no match

3498 UACCUUAUUAAUGGAUUGGCUGA

1

0 transposon

LTR

Stalker

3499 GCUUAUCCUUUGCUUGAUGAUUCG

1

0 ncRNA

3500 UCUCAUCGUUGUAGAACAAGCCCGACUA

1 no match

3501 CUAGAUCUUCCACCGUUGACUACGCCCCUA

1 no match

3502 UCCUGUUGAUGUGAGGGCCCCAAGUCUGUAACUCGGUCAAU

1 no match

3503 UCCUGACGAAGAGCGCAAGAAGAG

1

0 transposon

LTR

opus

3504 CAAGAUAUGACCAAAGCCAAGACAC

1

1 transposon

LINE

Cr1a

3505 AAAAACCUGAAGAUGAUCCUGAGUAAAA

1 no match

3506 UCAUAUGAUCUGAGAAUAUUUUC

1

2 transposon

LINE

Cr1a

3507 AUCUCAUCGUCGCAGAACAAGCCCGA

1

2 Su(Ste)

Su(Ste)3508 AUUUUCAUCGUUAGACGGCUCGGG

1

2 AT-chX

AT-chX-B

3509 UCUCACCGUCGUAGAACAAGCCCGAG

1

1 Su(Ste)

Su(Ste)3510 CGAAAUCUCAUCGUCGUAGAACAAGUCCCGA

1 no match

3511 CCCCAACUCCUGGAGCGGUUCGGC

1

0 coding gene3512 UACUUACCCGUUUACAGAAGUGGA

1

0 transposon

LTR

accord3513 UUUGUUGAUCAGUUUACACAUUAUU

10 transposon

LINE

Cr1a

3514 AAUCAACUGUGAGGGGAUCCUCAA

1 no match

3515 UCAACUGGGAUCCUCAA

13516 AGAAAUAGAUCUUCACCGUUGACUAGCCCC

1 no match

0 transposonLINE

2 Su(Ste)

G2
Su(Ste)LINE

G2
CG9010-RA¦CG9010
CG14560-RA¦msopa

rRNA

CG1851-RA¦Ady43A

2 coding gene

CG2216-RA¦Fer1HCH

3517 UGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAGCACACAGAGGAGAGCAGAUGAGAGCA
1 no match
3518 CGCACGACAGAGGAGAGCAGAUGAGAGCA

1 no match

3519 UAUGCCCGUACUCUGUGGUGACCG

1 no match

3520 UCUCAUUUCGUCGUAGAACAAGCCCGA

1 no match

3521 UCCGAAGUCUGAUACACAGCUGGAC

1

0 repeattrf

3522 CCUAAGUUGCACUUCUGAUGAUGGC

10 coding gene

CG1558-RA¦Kmn1

3523 AAGGCGAAAAGAACCCCGGGAGG

1 no match

3524 UCUCAUCUCGUAGAACAAGCCCGAG

1 no match

3525 UGGACUUUUUUCCGAUGAGCCAGC

1

1 transposon3526 UCUUCACCGUUGACUUGCCCCACA

1

0 Su(Ste)3527 AAAACUGCACCCUGAGUAUGGCAUUA

1

0 transposon3528 AAACCUCAACUGUCAGGAUCCUCAA

1 no match

3529 GAUGGAAAUGAAGAAAGUACA

1

2 coding gene3530 AUCUCAUCUUCGUAGAACUAGCCCGA

1

2 Su(Ste)3531 UAACUAUGUGACCAAGAAAGUUAGCU

1

0 transposon

LTR

3532 GGAUCCAACUAUGAGGGGAUCCUCAA

1 no match

3533 UGUUUCAUCGUUAGACGGACUCGGGCC

1 no match

3534 AUGGUUUCAUCGUUAGACGGCUCGGGCCGUGUAACGUCGGGUCAAU

1 no match

3535 UGCACCCUGGAUCGGACUCGCUAGUCA

1

0 transposon

LINE3536 UGUUUCAUCGUUGACGGCUCGGG

1 no match

3537 AGAAAAAAAAAAAAAGGGAUCCUCAA

1 no match

3538 GGUGCAUAUCAUUCACGCCACGCUCCG

13539 GGCCACUCCCGCCAACUGGACCCUGG

1 no match

3540 GUUUAAGGCAACUCCCUGGACGCACGA

13541 AUUGAUACGAAUGAGACCCGCACGUAA

1 no match

3542 UCUCAUCGUCGUAGAACAAGCUGA

1 no match

3543 GCACACAUAGGAGAGCAGAUGAGAGCG

1 no match

3544 CGAAAUCCUCAUCGUCGUAGAACAAGCCCGACU

1 no match

3545 CUCAUCGUCGUUGAACAAGCCCGA

13546 UUUAUACCUGAGCCAGUUUUGUUUUG

1 no match

3547 UCCGGGAAGAAAAACAAUGAUGGCCAAGU

1 no match

3548 UACUCGAGUAAGCGACUCAGUCAUG

1

0 transposon3549 UCUCAUCAUCGUAUAACAAGCCCGAU

1

1 Su(Ste)

Su(Ste)3550 UCUCAUCGUCGUAGAACAAGCGCGAG

1

1 Su(Ste)

Su(Ste)3551 GGAUCCUCAACUGUGAGGUCUCAA

1 no match

3552 CACACAUCGCUGAGGCCCACUGGCA

1

0 Su(Ste)3553 UUCAAGUGCCAUCCUAAGCAUGAACCCG

1

0 transposon

LTR

GATE

3554 AUCUCAUCGUCGUAGAACAAGCCCGACUGUAACGUCGGGUCAAU

1 no match

3555 AAAAAACCUGAAGAUGAUCCUGAGUCG

1

2 transposon

LINE

Helena3556 GGCAGACGCAAGUGGACUCGUUG

1

0 transposon

LTR

micropia3557 AAAGCUCCCCAGGUUGGUCGGUAAGUC

1 no match

3558 UCUCCAUCGUCGUAGAACUAGCCCGA

1 no match

3559 UGCAACCCCAACGACCACCCGCUGUU

1 no match

3560 UGUAUUUAUACUGUUUGGCCGAUGA

1

0 transposon

LTR

flea

3561 UUCUUCUCGACGUUGACCAGCCUCC

1

0 transposon

LTR

ninja-Dsim-like3562 UGAUACCGAGAAUGACAAUGGCUGAA

1

1 transposon

LTR

gypsy33563 GCUGAGAGUGAUGAUCAGAAAA

1

1 coding gene

CG4076-RA¦Nufip

3564 UGGACUUUUUCCGAUGAGCCAGUGA

1 no match

3565 CCGAACUUGAGAUCGGCCCUGGACGACC

1

1 coding gene

CG42398-RA¦SteXh:CG42398

3566 UUUCUCAUCGUCGUCGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)3567 UAAACUGUGAGGGGAUCCUCAA

1 no match

LINE

Su(Ste)LINE

BS
CG1647-RA¦CG1647
Su(Ste)0 Su(Ste)0 transposon

G2

297

INE-1

Su(Ste)LTR

1 Su(Ste)ninja-Dsim-like

Su(Ste)LTR

gypsy12

Su(Ste)3568 GAUGUUUCAUCGUUAGACGGCUCGG

13569 AUCGUCUCCGGGAUCGAAAUGUUUCAUCGUUAGACGGCCUCGGGC

1 no match

2 AT-chX

AT-chX-B

3570 AUCGUCUCGGGAGUGAAAGCACACAGAGGAGAGCAGAUGAGAGCA

1 no match

3571 UGUUUCAUCGUUACACGGCUCGG
3572 UGUUUCAUCGUUAGACUGCUCGGC

1

1 AT-chX

AT-chX-B

1

2 AT-chX

3573 AUCGUCUCGGGACUGAAAUGUUUCAUCGUUAGACCGGCUCGGGC

1 no match

AT-chX-B

3574 CGUUGACCAUUCCGAACAUACGC

1 no match

3575 AAGACCGAUGUGAAAUCCCCGAGCUU

1 no match

3576 UUAUGACCCCUGGUACUGAAAUGCA

1

1 transposon

3577 UCGCCCAGAGCGGUUUCCCUGUGUUUCA

1

0 no annotation

3578 UCGGCAUUACUCCGAUGGUGGCUCC

1

1 transposon3579 GCCCGAUCUGGUCGAGAACUUCG

10 coding gene

CG3644-RA¦bic

3580 CAGCACACACGAGGAGAGCAGAUGAGAGCA

1 no match

3581 AAUCAUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)3582 AUAUCUUCACCGUUGACUAGCCCC

1

1 Su(Ste)3583 AUAAGAUUGGACCCAGUACACUGCCUU

1

0 transposon3584 GUCUCGGGGAUAAAA

1

1 no annotation

3585 UUCAAACACAGUUCGAACCCCCCCGUG

1 no match

3586 UCUGGUGGCGAUAGCGAAGAGGACACAC

1 no match

3587 AUGUUUCAUCGUUAGACGGCUCGGGCU

13588 UACGACUUGAGAGAAACCAGGUG

1 no match

3589 UCUCUUACUCGUCGUAGAACAAGCCG

1 no match

3590 AUCUCAUCGUCGUAUCAAGCCCGA

1 no match

3591 AGAAAAUAAAUGCCAGUAAUUUUUAGUUGGGGUUC

1 no match

3592 UAUUAUUAAGAUGGGCUUGAAGG

13593 CAGCCUACGAACAGAGAGAAGACCC

1 no match

3594 UCUCAUCAUCAUAGAACAAGCCCGA

13595 UCUCAUCGUCGUAGAACAAGCCCCGCUGUAACCUCGGGGUCAAU

1 no match

3596 UUAAAUAUGACCCGAUUAAAUGAGAA

13597 AUCGUCUCGGGGAUGAAACUGUGAGGGGGAUCCUCAA

1 no match

3598 GGAAUACCGGGUGCUGUAGGCUUU

1 no match

3599 GCAACGAGAUGGCGACCUUGGAGAAA

13600 UGUUUUCAUCGUUAGACGGCUCUCGGC

1 no match

3601 GAUCCUCAACUGUGAGAGGAUCCUCAA

1 no match

3602 UCUCGAUCGUCGUAGAACAAGCCCGAGG

1 no match

3603 CAAGCUGACGCUAUAUGCCCCUGGU
3604 UUCGCAGAGAGAUAUGGUAGAUGG

DNA

Bari1

LINE

R1-element

Su(Ste)LINE

2 AT-chX

0 transposonDoc

AT-chX-B

LINE

1 Su(Ste)baggins
Su(Ste)1 no annotation

0 transposon

LTR

10 transposon

LTR

1

0 ncRNA

3605 UAAACGAGCAAGGAAGAGUCGGAA

1

0 transposon

LINE

Cr1a

3606 GGGCAACUUUGAGGGGAUCCUCAA

1 no match

3607 UGCCCGAUGAGAAGAAUGGCCC

10 transposon

LINE

RR497833608 UUGUACACGAGCGCAACGAAAAUACG

1

0 transposon

LINER1-element3609 CAAGAUAUGACCAACGCAAAGACUA

1

2 transposon

DNA3610 UAGAUCUCCACCGUUGACUUGCCCC

1

1 Su(Ste)3611 AACUCAACUGUGAGGAUCCUCAA

1 no match

3612 UUUCUUUGAAGAUGGCCCACAUAAAGA

1

0 repeat3613 UAAAUGCCAGAAUUUUAUUGGG

10 transposon

3614 AUGGUUGGACUGGGAAUGGCAUC

1

0 no annotation

3615 CUCACUGUGAGGGGGAUCCUCAA

1 no match

3616 UCAACUAUCUACGAGACCACCCAAC

1 no match

3617 CCCCGUACGUGAAAUGACCUGUGUG

1 no match

3618 UGUUUCAUACGUUAGACGGCUCGGGC

1 no match

3619 UCCGCGUAGCACUAAAUCACCGAUU

1

1 transposon

297

invader6
rRNA

1360
Su(Ste)trf

LINEbagginsLINE

R1-element3620 AUCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAUUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGAACAAGCCCGAGG
1 no match
3621 UGUUUCAUCGUUAGACGGCUCGGGCCUG

1 no match

3622 UAAUAGUGGGUCCGAGGAAUCAAUA

1

0 transposon3623 UACCGGUAUAGCACACUUUUGUAUC

1

0 coding gene3624 UCAAAUCCGUAGCUGCAAAUUAAUU

1

0 transposonDNAtransib2

3625 UGGACUUUUUCCGUAUGAGCCAGUG

1

2 transposon

LINE

G2

3626 UCUGGUUUCAUCGUUAGACGGCUCGGGCG

1 no match

3627 AUCUCAUCGUCGUAGAACAAGUCCGA

1

2 Su(Ste)

Su(Ste)3628 UCGAGAGGUCCCCGGUUCAAACCC

1

0 ncRNAtRNA

3629 UCCUCAUCGUCGCAGAACAACGCCCGA

1 no match

3630 AUCCUCAACCGUGAGGCAUCCUCAA

1 no match

3631 UGUUUCCAUCGUUAGACGGCUCGGG

1 no match

3632 AUCCUCAUCGUCGUAGAACAAGCCCGA

1

2 Su(Ste)

Su(Ste)3633 UGUUUCAUCGUUAAACGGCUCGGG

1

1 AT-chX

AT-chX-B

3634 AUCGUCGUCGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

3635 UGUUUCAUCGUUAGACGGCUGGG

1

1 AT-chX

AT-chX-B

3636 UGUUUCAUCGUUUAGACGGCUCGGGCG

1 no match

3637 GGAUCCUCAACUGUGAGGGGAUUCUCAA

1 no match

3638 UCUCAUCGUCGUAGAACAUGCCCG

1

1 Su(Ste)3639 GCCUCAGAGACACUGACCGUAGCAC

1

1 transposon

LINE

Rt1b

3640 UCCAGUCUCCCGACUACUAGAUACCCG

1

2 transposon

LINE

INE-1

3641 CCAAGAUAUGACCUAAGCAAAGACAC

1

2 transposon

LINE

Cr1a

3642 AAGGUGGAAAUGAAGGGAUCCUCAA

1 no match

3643 UUCGAAGCCCGGGUAUUCUGAAGCCAA

1 no match

3644 GGAUCCUCAACUGUGACUCAA

1 no match

3645 CAAUCGCCGCUAUGCUUACUUCAGCUA

1 no match

3646 UAGAUCUUCACCGUUGACUUCGGCCC

1 no match

3647 GAAAUUCUCAUCGUCGUAGAACAAGCCCG

1 no match

3648 UACAAUCUCCGAGCAAGACCCCGAUUC

1

2 transposon

LINE

Circe

3649 CAGGCACACAGAGGAGAGCGAGAGUGAGGACA

1 no match

3650 AAAAGGUGGAAAAUGAAGAAAGUACA

1 no match

DNA

transib2
CG41580-RA¦CG41580

Su(Ste)3651 UCCAUCUCUGAAGUUUCAUGUUUGGC

13652 UAAUGCCCGAAGGUUGCCUCU

1 no match

0 transposon

3653 UCUCAUCUUCGUAGAACAAGCCCCGACUGUAACUCGGGGUCAAU

1 no match

3654 UUAAUACCCAGGUGAUUACCACUAU

1

1 Su(Ste)

3655 UAUAUAGUGCCGAGAACAAUAUGCC

1

0 transposon

3656 UCUCAUCGUCGUAGAACAGGCCCUA

1

2 Su(Ste)

Su(Ste)3657 UCAUCUUCUUCUCGACGUCACCA

1 no match

3658 UCUCAUCGUCGUAGAACAAGCCCGCU

1

2 Su(Ste)

Su(Ste)3659 UUCGGGGUUUUGGCACUUUGCG

1 no match

3660 GCAUGAUGUGAUAGCCGUUACACU

1 no match

3661 ACAUCCUCAACUGUGAGGAAA

1 no match

3662 AACUGGUGAGGUGAUCCUCAA

1 no match

3663 AGUUCAAGCCCGGGUAUUCUGAAGCC

1

0 repeattrf

3664 UCGUCAUCGUCGUAGAACAAGCGUCGA

1 no match

3665 UCGUCAUCGUCGUAGAACAAGCCCGGU

1 no match

3666 UCGGACACCGAACCGGGAAGGCGA

1

0 transposon

3667 UUAUAAGGAUGAUGAUACCGAUGAAA

1

1 no annotation

3668 AAGAUAUGACCAGAGCAAAGCAAC

1

0 Su(Ste)3669 AGGAUCAACUGUGAGGGGAUCCUCAA

1 no match

3670 AUCUCAUCGUCGUAGAACUAGCCCCGA

1 no match

3671 UCCGAACGUACCACGGUCCCCCAGU

13672 UCUCAUUCGUCGUAGAACAGCCCGA

1 no match

3673 UCUCAUCGUCGUAGAAGAAGCCCGACUGUAACCUCGGGUCAAU

1 no match

3674 UCUCAUCGUCGUAGAACAACCCCCGAA

1 no match

3675 UGUUUCAUCGUUAGACGGCUCGGGCUC

13676 UACUAGCUGGCCGAGGAUCCCGAUU

1 no match

3677 GCGACACAGAGGAGAGCAGAUGAGAGCA

1 no match

3678 UCGAUUCCGGCAACGAGAUGACCACG

13679 UGUUUCAUCUUUAGACGGGCUCGGGC

1 no match

1 transposon

LTR

Quasimodo

Su(Ste)
LINE

LTR

G5

TirantSu(Ste)Low̲complexity

F-element

2 AT-chX

AT-chX-B

0 coding gene

CG5547-RA¦Pect3680 AUUGACCGACGUACAGACGGGCGGUUGUUACGUACCGAACGGACUAGAGAGGUUUCAGUCCCGAGACGAU
1 no match
3681 UAACAUUGGACCCAGUACACUGCC

1

1 transposon

3682 AACUUCGGGAUAAGGAUUGGCUCUGA

1

0 ncRNArRNA

3683 UCCGGGAGAAAACAAUGAUGGCCAAA

1

1 coding gene

CG12717-RA¦CG12717

3684 AGGGGAUCCUCAACUGUGCCUCAA

1 no match

3685 GUGAUGUCAACGUUUGAUCCCUG

13686 UUUCUCAUCGUCGUAGAACUAGCCCCGA

1 no match

3687 AGUCUCAUCGUCGUAGAACUAGCCCGA

1

2 Su(Ste)3688 UCCUUCGGGAUGAUUUGUACCGUAG

1

1 transposonLow̲complexity

F-element

3689 UUAAUACCUCGAGUACGUCUGCUCUC

1

0 transposon

LTR

Max

3690 UGUCCGGACAGCUGGGCCCGAA

1

0 Su(Ste)3691 CAACUAGUGAGGGGAUCCUCAA

1 no match

3692 UAUACCGGACGGUAUGCAACCCUUAUAA

1

2 transposon

0 transposon

LINE

LTR

Doc

ninja-Dsim-like
Su(Ste)Su(Ste)LTR

gypsy123693 UGUUUCAUCGUUAGACGGCUCGGGGCCUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAAUAACAAGAUGCAUACGAUGUGGC
1 no match
3694 UCAACUGUGAGGGGGAUCCUCAAC

1 no match

3695 CUCUCAUCGUCGUACGAACAACGCCCGAC

1 no match

3696 UUUCAUCGUCGUAGAACAAGCCCGUA

13697 UCGUCAUACGUCGUAGGAACAAGCCCGA

1 no match

3698 GAUUCCGGAGAGGGAGCCUGAGAAAC
3699 CUGGUUGAACGUGUCCUGAAAGUA

2 Su(Ste)

Su(Ste)10 ncRNArRNA

1

0 Su(Ste)

3700 UGUAGGUGUACUGACCCAGUCGGA

1

0 transposon

LINEbaggins

3701 GAUCCCCCCUGAAGUCCAAUGCACUG

1 no match

3702 UGAUUCCGAUCUUGGACAUUCCCGA

1

0 transposon

LTR

roo

3703 GCAAUCAUCCAAGGCUGAGAUCCGG

1

0 transposon

LTR

mdg3

3704 UCGUCAUCGUCGUAGAACAGGCCCG

1 no match

3705 UCGUCAUCGUCGUAGAACAAGCCCGU

1 no match

3706 UCGUCAUCGUCGUAGAACAAGCCCGGAA

1 no match

3707 UUUGGCCAGGUUAUGGAGAAAACCCCGU

1

0 repeat3708 UAGAUCUUCACCGUUGACUAGCCCCG

1

1 Su(Ste)

3709 UAACACUUCCCAGAAUGCACACCACCCA

1

0 transposon

LINE

Cr1a

3710 GUAGUGACCCCUGGUACUGAAAUGCGA

1 no match

3711 CCUCAACGUGAGGGAUCCUCAA

1 no match

3712 AUGUACUACCCCCUUCAUGACUCAAAG

1 no match

3713 AAGAUAUGACCAAAGCAAAGACAC

1

0 transposon

LINE

Cr1a

3714 UCUACUGACUUCAGUAAGCCCCGUAC

1

0 transposon

LINEbaggins

3715 UGUUUCAUCGUUAGACGGGCUCGGGGC

1 no match

3716 CGACAACGUUGACCACUGUGCCGGGA

1

2 coding gene

CG8340-RA¦128up

3717 CAAGCACCUCGAGAACAGUUCCCUUAG

10 coding gene

CG17078-RA¦CG17078

3718 CGAAAUGUUUCAUCGUUAGACGCUCGGG

1 no match

3719 AUGGCACGAAAGACGAACCCGAUUU

1 no match

3720 UAGACUCGAAAAUUCGUUUUAUG

1

0 Su(Ste)3721 AAACCUGAAGAUGAUCCUGAGUCGCAA

1

1 transposon

3722 GUCUUGGGAUGAAAAUCCUCAA

1 no match

3723 UGUUUCUAUCGUUAGACGGCUCGGCC

1 no match

3724 CCUGCUGACGGGCCCGAAAACACGA

1 no match

3725 UACGAAUCGUCCGAGCAAGACCCCGAGUC

1 no match

3726 UUAAGGCCGAGAGCUGAUGACGAGU

1 no match

3727 UAGAUCUUCACCGUUGACUUGCUCCACUU

1 no match

3728 UAAUGCCAGUAAUUUUUAGUUGGGGUUC

1 no match

3729 UCUCAUCAUCUUAGAACAAGCCCGAA

1

2 Su(Ste)3730 UGUUGCCAGUUCACUCGUUCACAGA

1

0 Su(Ste)

3731 UAAAUGCCAGAAUUUUAUUUGGGUUC

1

1 transposon

LINEbaggins

3732 AAAACCUGAAGAAGAUCCUGAGUCGC

1

1 transposon

LINE

Helena3733 UUUUUCAUCUAGACGGCUCGGGC

1 no match

Su(Ste)SAR̲DM
Su(Ste)Su(Ste)LINE

HelenaSu(Ste)Su(Ste)3734 GUCUCAAUCGUCGUAGGGAACAACGCCCGA

1 no match

3735 AACUUACGGGAUAAGGAUUGGCUC

13736 CGAAACCCAAAGGAUACUCGAAGACACCCACGG

1 no match

3737 GUGGAGGGGAUCCUCAA

13738 AAACCUAGAAGAUGAUCCUGAGUCGCA

1 no match

3739 UCGUCAUCGUCGUAGAACAACGCCCGA

1 no match

3740 CUAAGACCCAAUCUAUGUGCUUAACA

1

1 transposon

3741 GAGGACUAGCUGGCCGAGGAUCCGA

1

0 Su(Ste)3742 UCUCAUCGUCGUAGAACAAAGACCCGAC

1 no match

3743 AUCUUCCGACAAACGAAGAAAUGGCA

13744 UAGAUCUUCCACCGUUGACUAGCCCCCUCGUAACUCCGGGUCAAU

1 no match

3745 UCCGAGGAAAAAUUGAUCCAGCAGC

1 no match

3746 UAGAUCUUCACCGUUGAACUACGCCCC

1 no match

3747 UUCUGCCCGAUGAGAAGAAUGGCC
3748 UUCUCAUCAUCGUAGAACAAGCCCGAU

2 ncRNArRNA

2 coding gene

CG10675-RA¦CHKov2

LTR

gtwin
Su(Ste)1 transposon

LTR

diver2

1

0 transposon

LINE

RR49783

1

0 Su(Ste)3749 UUAAACAUCCUAUGAGGCUACGGC

10 transposon

LINE

Cr1a

3750 UUGAUAGAAACCUAUAGAGACAAGGC

1

0 transposon

LTR

opus

3751 UCAACUGUGACGGGAUCCUCAA

1 no match

3752 UGUUUCAUCUUUACACGGCUCGGG

1

2 AT-chX

3753 AUGAUACCGAGAAUGACAAUGUUUGA

1

2 transposon

3754 UUCCGAGGAACCAACUGAUCCAGCU

1

1 Su(Ste)3755 UUCCGAAGACAAGUAUACCGUGGCA

1

0 transposon3756 UCUCAUCAUUGUAGAACAAGCCCGA

1

1 Su(Ste)3757 AACUGUGAGGUGAGGGGAUCCUCAA

1 no match

3758 ACCUGAAGAUGAUCCUGAGUCGCAA

1

1 transposon

LINE

Helena3759 UGGUACUUUUUUCCGAUGAGCCAGUGA

1

2 transposon

LINE

G2

3760 UGUUACAAUGAUCUGAUCGGGUUU

10 transposon

LINE

Cr1a

3761 UGUUUCAUCGUUAGACCGGCUCGGG

1 no match

3762 UAAUGCCGGAAGCGAUCCCACUGCU

13763 UCUCAUCGUCGUAGACAAGCCCGAG

1 no match

3764 GGACCGAACACUUUGAACCAAGUAU

13765 UCUCUACUCGUCGUAGAACAAGCCCGA

1 no match

3766 CAGCGACACAGAGGAGAGCAGGAUGAGA

1 no match

3767 UCGCUCGAGAGGGACCGUAUGCGGC

13768 GAAUAUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGAACAAGCCCGA

1 no match

3769 CUUUUCUCAUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

3770 UAUGUUGGCCUGGAUACGCUUUCUGU

1

0 transposon

LINE

G2

3771 AAUAACUGUAAUUAAUAACUGGCCC

10 transposon

LINE

HMS-Beagle2

3772 GUUAUCCUUCCCAAGGCGUCUGGAUC

1

0 transposon

LTR

flea

3773 UUGAACGUGUCCUGAAAGUAGUUGG

1

0 Su(Ste)3774 UGUUUCAUCGUUAGACGCUCUGGC

1 no match

3775 UACGAGAUGGUCACAGGGACCAGGAGA

1

0 transposon

3776 GUCGGGCGCGGUUAGUACUUAGAU

1

0 ncRNA

5SrRNA

3777 AUCGUCUACGGGACUGAAACUGUGAGGGGAUCCUCAA

1 no match

3778 AUCUCAUCGUCGUAGAAACAAGCCCGAGG

1 no match

3779 UAGAUCUUCACCGUUUACUUGCCC

11 Su(Ste)

Su(Ste)3780 UCUCAUCUUCGUAGAACACCCCCGA

1 no match

3781 GCUGAACGUAGUCUCUCGAGAGCGA

1

1 transposon

3782 GGUUUCAUCGUUAGACGGCUCGGGC

1

1 AT-chX

3783 UGUCAUCGUCGUAGAACAAGCCCCGA

1 no match

3784 GCCCCUUACUCUGUGGUGACCAACA

1

1 transposon

3785 UCCGAUUUCAAGUACCCGGUGAACAU

1

1 repeat

3786 CAAGAUAUGACCAAAGCAAAGAC

1

0 transposon

LINE

Cr1a

3787 UAUUUAAGAUCAACGAGAGAUGGCC

10 transposon

LTR

opus

3788 GACUUCCGAGAAAGCCCGCAGAAUUU

1

0 transposon

LTR

flea

3789 AUGGCAAACGAGAGCUCUUCCGGGUC

10 transposon

LINER1-element

3790 UAGAUGAGGUAUAAGGUUGGCCC

10 transposonLow̲complexity

F-element

3791 CAACCAGAGAUCUAGAGGGCCCA

1

0 no annotation

3792 AUUCCGAGGAACCAGUUGAUACCAGCC

1 no match

3793 UGUUACUGAUCUAGAAGUACAAUGU

1 no match

3794 AGUGAUGUCAACGUUUGAUCCCCUG

1

1 transposon

LTR

ninja-Dsim-like3795 UUAUACCCAGGUGAUUACCACUAUUAC

1

0 Su(Ste)3796 GCCGAACGUAGUCUCGAGAGCGAGAU

1 no match

3797 CAAGAUAUGGCCAAAGCAAAGACA

13798 UACUGGUUUCAUCGUUAGACGGCUCGGGCG

1 no match

3799 CCUGACGAAGAAGAGAUGCCCAG

13800 CGGGAUGAAAUAUGAGGGAUCCUCAA

1 no match

3801 AAAAGAACCCGAUUCCUCUUCCAUGAGA
3802 GAUAUGACCAGCAUGGACCUAACAC

Su(Ste)AT-chX-B
LTR

gypsy3
Su(Ste)LTR

micropia
Su(Ste)0 coding gene

CG41580-RA¦CG41580

0 Su(Ste)

Su(Ste)0 transposon

LTR

ninja-Dsim-like
Su(Ste)Su(Ste)LTR

LTR

ninja-Dsim-like

invader1AT-chX-B

LINE

baggins
RSP

Su(Ste)1 transposon

LINE

Cr1a

1 transposon

LTR

ninja-Dsim-like

1

0 transposon

LINE

Doc4

1

0 Su(Ste)

Su(Ste)3803 UCUCAUCUUCGUAGAACAAGCCCGAGG

1

1 Su(Ste)

Su(Ste)3804 CUGUAACUCGGUCAA

1

1 repeat

SAR̲DM

3805 GUAACUUCGGGAUAAGGAUUGGCUC

10 ncRNArRNA

3806 CGAAAUGUUUCAUCGUUAGACGGCUCGG

1 no match

3807 CAAGCCCGGGUAUUCUGAACGCCAAGA

1 no match

3808 UAUUGUACUACCCCUUCAUGACUCAAA

13809 AUCAACUGUGAGGGGGAUCCUCAA

1 no match

3810 CCCCGUACUCUGUGGUGACCGACAC

13811 AUGUUUUCAUCGUUUAGACGGCUCGGG

1 no match

3812 UCUCAUCGUCGUAGAACAAGCCCGUCUGUAACCUCGGGUCAAU

1 no match

3813 ACUCAAACUGUGAGGGAAUCCUCAA

1 no match

3814 UCUCAUCGUCGUAGAACAAGCCCGAAUGUAACUCGGGUAAAU

1 no match

3815 UAGCUUGCACCAUCACCAUCACCAU

1 no match

3816 UUCGUUGUGAUUCUGCGCCCUUACGA

1

0 transposon

LINEbaggins

1 transposon

LINEbaggins

0 transposon

LINE

Doc

3817 CUCAACUGUGAGGAUCCCCAA

1 no match

3818 CCCCGUACUCUGUGGUGACCAACA

1

0 transposon

LINEbaggins

3819 ACUGCAUUCGCGUCGAGGCCAGG

1

1 transposon

LINER1-element

3820 ACCCAAGUACAAGCCCGGCGAAAGACC

1

0 repeat3821 UCAAGUGUGACCGUAGUUUGCUACAA

1

0 transposon

LINE

Circe

3822 UACUGAGUCGUUUGCCGAGAGCUGA

1

0 transposon

LINE

Rt1b

3823 GCGGUGCCGAGAUAUGCUGCGAGUUGCCAA

1

2 transposon

Simple̲repeat

I3824 AAUUCAGCGAUUCCGAUUACUAUC

1 no match

3825 UCUCAUCUUCGUAGAACAAGCC

13826 UUCGAACUGGAAGGAGUACGAAUGAGUC

1 no match

3827 AAAACCUGAAGAUGAUCCUGAGUCUC

1

1 transposon

LINE

Helena3828 GCCCCCGUACUCUGUGGUGACCAA

1

1 transposon

LINEbaggins

3829 UGGACUUUUUUUCCGAUGAGCCAGUG

1

1 transposon

LINE

G2

3830 CGUCUCGAGAUGAAUGGAUCCUCAA

1 no match

3831 UGUUUCAUCGUUAGACGGCUCGUG

13832 GAUUAGAUACCCCGGUAGUCCUGG

1 no match

3833 UAGAUCUUCACCGUUGACUAACCCCAC
3834 UAGAUCUUCACCGUUGACUUGGCAC

trf

1 Su(Ste)

Su(Ste)1 AT-chX

AT-chX-B

1

1 Su(Ste)

Su(Ste)1

1 Su(Ste)3835 UGAUACCGAGUAUGACAAUGGUUGA

1

1 transposon

LTR

gypsy33836 CCAAGAUCAUCAACCCGUGUUAU

1

0 transposon

LINE

Cr1a

3837 UCGACAAUGACCGAUCAGUAGAGAAC

1

0 transposon

LINE

Rt1b

3838 UCGUCAUCAUCGUAGAACAAGCCCGA

1

2 Su(Ste)3839 AAUCCUCAACUGUGAG

1

2 transposon

LINE

TART-B

3840 UAAAAUGCCAGAAUUUUAUUGGGG

12 transposon

LINEbaggins

3841 CACACAGAGGAGAGCAGAUGGAGCA

1 no match

3842 CGAAAUGUUUCAUCGUUAGACGCCUCGGGC

1 no match

3843 AUGUUUUCAUCGUUGGACGGCUCGGGC

1 no match

3844 UUAAGUGCCGGGAAGCGAUCCCACUCG

1 no match

3845 UCUCAUCGUCUUAGAACAAGCCCGC

12 Su(Ste)3846 UCUCAUCGUCGUAGAUCAAGCCCGUA

1

2 Su(Ste)3847 UUCUGUUGAUGUGGGGCCCCAAGU

1

0 transposon

3848 UCGAACCAGAGGCUGGGUACAUCGC

1

0 no annotation

3849 CCCAAUCAGUUUUAUCUGCAGAGAUG

1

0 transposon

3850 CAGCCACAGAGGAGAGCAGAUGAACA

1 no match

Su(Ste)Su(Ste)Su(Ste)Su(Ste)
LINE

G2

LTR

gypsy83851 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAAUCAACUGUGAGGGAUCCUCAA
1 no match
3852 UAAGGGAAGUCGGCAAAAUAGAU

1

1 ncRNA

3853 AUCGAGUUGCAGAAUUGAGGACCGC

1

1 transposonrRNA3854 AUCCUCAACUGUGAGGGAUCCUAA

1 no match

3855 GUCUCGGGUGAAAGGAUCCUCAA

1 no match

3856 UCUCAUCUCGUAGAACAAGCCCGU

1 no match

3857 UCUCAUCGUCGUAGAACAAGUCCGAGG

13858 CAGCACACAGAGGAGAGCAGGAUGAGAGCA

1 no match

3859 AGAAAGUCUCAUCGUCGUAGAACAAGGCCCGA

1 no match

3860 CUCAACUGUGAGGUGAUCCUCAA

1 no match

3861 AAAAAAAAAAAGGAUCCUCAA

1

2 no annotation

3862 UAGAUCUUCACCUUUGACUAGCCCC

1

1 Su(Ste)

Su(Ste)3863 UAGAUCUUCACCGUUGACUACCC

1

1 Su(Ste)

Su(Ste)3864 AUUCAGCGAUUCCGAUUACUAUC

1 no match

3865 ACUCCGAACGUACCGGUGCCCCAGU

1 no match

3866 UAGAUCUUCACGUUGACUUGGCC

1 no match

3867 UCCAACUGAAGGAGUAGAACAAGCCCGA

1 no match

3868 UCUCAUCCUCGUAGAACAAGCCCAA

1

2 Su(Ste)3869 GCCGACCGGAGCAGCUUAUACGUAGC

1

1 transposon

3870 UGAUGACCGAAAUUUUGAAAAACGGAU

1

0 repeat

SAR̲DM

3871 UCUCAACUGUGAGGGGAUCCUCAA

1 no match

3872 UUCUCAUCGUCGUAGAGCAAGCCCGA

1

1 Su(Ste)

Su(Ste)3873 UGUUUCAUCGUUAGGCGGCUCGGGCCG

1

2 AT-chX

AT-chX-B

3874 UCCUCAACUGUGGGGGGAGUCCUCAA

1 no match

3875 GAAUGUUUCAUCGUUAGACGGCUCGGG

1 no match

3876 UUCGCCCGCGAGAUGUACCCAAAGACC

1

0 coding gene

CG10627-RA¦CG10627

3877 GAUCUUCACCGUUGACUUGCCCCACA

1

0 Su(Ste)

Su(Ste)3878 UUCGAUCGUCUAGACAAGCCCGACG

1 no match

3879 CGAAUUGUUAGAGAGCGAGAGAGCGAG

1

0 transposon

3880 AUCCUCAAUGUGAGG

1

1 coding gene3881 AUCCUCAACGUGAGGGGAUCCUCAA

1 no match

3882 GUCCGUAGUGAUGAAGACAGAGCCA

1

1 transposonLow̲complexity

F-element

3883 UGAUACCGAGAAUGACAAUGGCU

10 transposon

LTR

gypsy33884 UCCGAGGAAUCUGGGUUCAAGAUUU

1 no match

3885 UGAUGACCGAAAUUCGGAAAAACGGA

13886 AUCCUCAACUCGUGAGGGAUCCUCAA

1 no match

3887 GCAGGACGAAAAGACCCCGGGACCUUCA

1 no match

3888 AGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

3889 AUCUCAUACGUCGUAGAACAAGCCCGA

1 no match

3890 UCUCAUCAUCGUAGAAUAAGCCCGA

13891 UGUUUUCAUCGUUAGACGGCUCGGGCCU

1 no match

3892 UCGUACAUCGUCGUAGAACAGCCCGA

1 no match

3893 UCUCAGUCGUCGUAGAAACAAGCCCCUAGCGUGUAACGUCGGGUCAAU

1 no match

3894 CUCGAAUGAGUGCUUGAUAUGACCAGA

1

1 Su(Ste)3895 UUCCAGUCUCCCGACUAUCAGAUACCCG

1

0 transposon

3896 UUUCCGAAAUCUAGAUGUGUGCAUUUU

1

0 coding gene3897 UCCUCAACUGUGAGGGAUCCUAA

1 no match

3898 UCUCCUCGUCGUAGAACAAGCCCG

1

1 Su(Ste)

3899 CGUUAACCAAUUUCCGAACAUACGCC

1

1 transposon

LTR

1 Su(Ste)

Quasimodo

Su(Ste)Su(Ste)LTRninja-Dsim-like

DNA

1360
CG33322-RA¦CG33322

0 repeat

ARS406̲DM

1 Su(Ste)

Su(Ste)Su(Ste)LINE

INE-1
CG33664-RA¦CG33664
Su(Ste)LTR

DM88

3900 UCUCAUCGUCGUAGAACAUCCCCGA

1

2 Su(Ste)

3901 UUCCGAAGGAGGUCGGUUGCCUAUGU

1

0 transposon

LTR

Su(Ste)3902 CAAGAUAUGACCAAAGCAAAGACU

1

0 transposon

DNA3903 UUGGACCGAACACUUUGAACCAAGUU

1

1 Su(Ste)

Su(Ste)3904 UCUCAUCGUCGUAGAACAAGCCCGGU

1

2 Su(Ste)

Su(Ste)3905 UAGAUCUUCACCGUUGACUUUCCCC

1

1 Su(Ste)

Su(Ste)3906 CGAAAUAGAUCUUUCACCGUUGACCUUGGC

1 no match

3907 AGCCAGUUACCGAAGCUGCGGAU

1 no match

3908 GUUCAAGCCCGGGUAUUCUGAAGCCA

1

0 repeattrf3909 UCUCAUCGUCGUAGAACAACGCCCC

1 no match

3910 CCCGUACUCUGUGGUGACCAACAA

13911 AAAAACCUGAAAGAUGGACUCCUGUAGUCGC

1 no match

3912 UAAACCGUCAUUCCAGCGCAAGUUGCCC

13913 UCCGAACGUACCACGGUCCCCAGU

1 no match

3914 GAUCCUCAACUGUGAAGGAUCCUCAA

1 no match

3915 CGCUGACCAAUUUCCGAACAUACGC

13916 AAUUUACGUAAACCAAAGGCCGUGAGUU

1 no match

3917 UUCGAACGGUUACCCCAGGAUGCUUGUCGC

1 no match

3918 AUCGUCAUCGUACGUAGAACAAGCCCGGA

1 no match

3919 CAACCGGACGGGCCUAGAGUUAUUCCC

13920 AUGUCACGCGGGAGACCGGGGUCAA

1 no match

3921 UAUCUGGGAGAGAUCGAUGAAUGACCA
3922 UUGGGAACACCGCGUGUUGUUGGCCU

gtwin
1360

1 transposon

LINEbaggins

0 transposon

LTR

ninja-Dsim-like

1 transposon

LTR

DM88

0 coding gene

CG40635-RA¦CG40635

1

0 coding gene

CG3436-RA¦CG3436

10 ncRNA

5SrRNA

3923 AUUCUCAUCGUCGUAGAACAAGCCC

1

1 Su(Ste)

Su(Ste)3924 UUCACCGUUGACUAGCCCCACACA

1

0 Su(Ste)

Su(Ste)3925 UAAGACCUCUGUUCUGCUUUCAUU

1

0 ncRNArRNA

3926 UCAACGUCCCAAGAACUCCCGGU

1 no match

3927 AUCUCAUCGUCGUAGAACAAGCCCGAGG

1

1 Su(Ste)

Su(Ste)3928 UAGAUCUUCACCGGUUGACUAGCCCA

1 no match

3929 AUCGUCUCGGGACUGAAA

13930 UCUCAUCUUCGUAGAACAAGCCCCGACUGUAAUCGGGUCAAU

1 no match

3931 AUCGAGAUCAACGACUCACCCGAA

1 no match

3932 CGCCUGCUGACGGGGCCCGAAAACAC

1

0 transposon

LTR

opus

3933 UACCCACAUCUAACGGAGAGGCCUG

1

0 transposon

LTR

ninja-Dsim-like3934 UGUUUCAUCGUUAGACGGGCUCGGG

1 no match

3935 UAGAUCUUCACGUUGACUAGCCCCA

1 no match

3936 UCUCAUCGUCGUAUAACAAGCCCGUA

13937 UUCGAGAGCAUAUAAUCCCCGUAGG

1 no match

3938 UCAACGGCCCGGACUGCUCCACGCC

1

1 transposon

LTR

ninja-Dsim-like3939 UAAGUUUACGAAAAUCGAUGACCA

1

0 transposon

LTR

gypsy123940 UCUCAUCGUCGUAGAACUACCCCGA

1

1 Su(Ste)

Su(Ste)3941 CUCUCAUCGUCGUAGAACAACGCCCGU

1 no match

3942 AUCGUCUCGGGAGUGAAAUACUCUAUCAUCGUAGAACAAGCCCGA

1 no match

3943 GAAGCACCGUUUCCCGUCCGAUCAACUC

1 no match

3944 UCUCAUCGUCGUAGAACUAGUCCCGCUC

1 no match

3945 AGGGGAAUUGGUCCUUAUUAUCCCUC

1 no match

3946 GAGGAACUCGUUGCCCUUGAUUCCGA

1

0 Su(Ste)

Su(Ste)3947 CAACCAGCCCGGAGUCUCCAUCCA

1

0 coding gene3948 UCGACGGAGCUCACUUACCUAAUGUA

1

0 transposon3949 UACUUACAGUGGGUUGUCCAGGGGC

10 Su(Ste)

3950 CAAGAUAUGACCAAAGCAAAUACA

1

1 transposon

3951 UUCAAGGUUACCCCAGGAUCCUGU

1

1 repeat3952 GAAAUCCCGAAGUUUGAACGUGGGAACG

1 no match

3953 UGCUGACGGGGCCCGAAAACACGAG

13954 CUCUCAUCGUCGUAGAACACGCCGA

1 no match

3955 UUCACCGUUGACUUGGCCCACACAUC

13956 GUUGAUUGACAGACCACUUCUUCU

1 no match

3957 UCUCAUCGUCGUAGUAACAAGCCCGA

1 no match

3958 UCGUCUUGGGUGAAAAUCCUCAA

1 no match

3959 UACUUUUUGUUAGGUGUACUGACCCAG

1 no match

3960 UAACUUCAGGAUAAGGAUUGGCUCUG

13961 UCUCAUCGUCGUAGAAGAAGCCCCGACUGUAACUCGGGGUCAAU

1 no match

3962 AUUAAGUGCCGGAAGCGAUCCCGCUG

1 no match

3963 UCUCAUCGUCGUAGAACAGCCCCGA
3964 AGUUUCAUCGUUAGACGGCUCGGGC
3965 UGCAAUUUUCCCGUGGGACUACA

1 no match

3966 UGUCAUCAACCCGGCGUAUUACCCG

1

0 transposon

3967 AUAGAUCUUCCCCGUUGACUUGGCC

12 Su(Ste)

Su(Ste)3968 UCGUCAUCGUCGUAGAACAAGCCGA

1 no match

3969 UGUUUCAUCUUUAGACGGCUCGGGUC

1 no match

3970 UCUCAUCGCGUAGAACAAGCCCG

1 no match

3971 UCCUAUUACAGGAGAUAUUUGGACAC

1

0 Su(Ste)

Su(Ste)3972 AUCGGUCUCGGGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGG

1 no match

3973 AACGGUGCCCAAAAUUUAAACAACUCAUG

1 no match

3974 UAUAUCUCUCGAGCCUUCAUCCAGU

1

0 transposon

LTR

Tabor

3975 UGGACUUUUUUCCGAUGAGCCAGUGAA

1

0 transposon

LINE

G2

3976 CAAGAUAUGACCUAAGCAAAGACACUA

1

1 transposon

LINE

Cr1a

3977 UCCUCAUCAUCGUAGAACAAGCCCG

1

1 Su(Ste)3978 AAUUAAUACCUCGAGUACGUCUGCUC

1

1 transposon

3979 UCGUCAUCGUCGUAGAACAAGCCCGAA

1

2 Su(Ste)

3980 AUCUCAUCGUCGUAGAACAAGCUCG

1

2 Su(Ste)

3981 UCGGCCCGAACCCUUCUGGUGUG

1

0 transposon

3982 AUCUCACCGUCGUAGAACAAAGCCCGA

1 no match

2 no annotation

2 Su(Ste)0 transposon

Su(Ste)CG31359-RA¦Hsp70Bb
LINE

R1-element
Su(Ste)

LINE

Cr1a
trf

LTR

opus

0 Su(Ste)

Su(Ste)1 ncRNArRNA

1

2 Su(Ste)

Su(Ste)1

1 AT-chX

AT-chX-B
LINE

Doc4

Su(Ste)LTR

Max
Su(Ste)Su(Ste)LINEbaggins

3983 UAGAUCUUCUUCGUUGACUAGCCCC

12 Su(Ste)3984 UCCGUCGGGAUGAUUUGUACCGUAGA

1

0 transposon

Su(Ste)3985 UUUCGAUUGCAAAUUCUCGGGCU

1

0 no annotation

3986 UCUCAUCGUCGUAGAACAAGUCCCGACUC

1 no match

3987 AAAACCUAGUUACUUACGGGCUCUAC

1

0 no annotation

3988 AUAACAAGAUGCAUACGAUGUGGCUC

1

0 transposon

3989 AUGCACCCGCGAUUGAGAUCAACCAG

1

1 no annotation

3990 UUCGUCAUCGUCGUAGAACAAGCCCGGA

1 no match

3991 CUCUCAUCGUCGUAGAAGAAGCCCGA

13992 AUCUCAUCGUCGUAGAAACAAAGCCCG

1 no match

3993 UCCUGUAGUACGAGGUCAUGCCUAGUU

12 transposon

LTR

opus

3994 UCGUUGACCAAUUUCCGAACAUACGCCA

1

0 transposon

LTR

Dm88

3995 UAGAUCUUCACCGUUGACUAGCCCGA

1

1 Su(Ste)

Su(Ste)3996 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGG

1 no match

3997 UGUUACAUCGUUAGACGGCUCGGGUC

1 no match

3998 GACUGCAGAUCGAGAGGUCCCCGGUU

10 ncRNA

tRNA

3999 UUCAAGCCCGGGUAUUCUGAAGUCAAG

1

1 repeattrf

4000 AACUGAGGAGGAUCCUCAA

1

2 coding gene

CG18635-RA¦CG18635

4001 CACACAGAGGAUAGCAGAUGAGAGCA

1 no match

4002 UCUCAUGUCGUAGAACAAGCCCG

14003 UAAAUACUCAUCAUCGUAGAACAAGCCCGA

1 no match

4004 UAGAUCUUCACCGUUGACUACCCCCCA

14005 UGUUUCAUCGUUAGACGGCUCGGGGCCUGUAACUCGGGGUCAAU

1 no match

4006 UAAGAGUCUUCACCGUUGACUAGCCCCAACG

1 no match

4007 UUAAUGCCUGAAGCGAUCCCCACUGC

1 no match

4008 UCUCAUCGUCGUAGAACACCCGA

1 no match

4009 CGUAACUUCGGGAUAAGGAUUGCUCU

1 no match

4010 UUUAGUUACCCGAUUUUUAAACAAA

1

0 transposon

LINE

Cr1a

4011 UUCCGUCGGGAUGAUUUGUACCGUAGU

1

1 transposonLow̲complexity

F-element

4012 UCCGUGGACCUCGAGACCCUCGACC

1

0 no annotation

4013 UGUGCCCGAGCGUGGGACCUCGAUAA

1

0 transposon

LINE

Cr1a

4014 AAGUUUCAUCGUUAGACGGCUCGGGC

1

2 AT-chX

4015 CAAACGGAAAUGGGCCGGCGAGG

10 coding gene

4016 GCUACCGGGCGUGAUCAUCCACAAUC

1

0 transposon

LTR

ninja-Dsim-like

4017 AUCGUCAACUGUGAGGGAUCCUCGAA

1 no match

4018 AUCGUCUCGGGGAUGAAAAUCGAGGAACCAAUCGAUCCAGCUG

1 no match

4019 CGAAACCUCAACUGUGAGGGGAUCCCUCAA

1 no match

4020 CACACAGAGGAGAGAGAUGAGUGCA

1 no match

4021 GCGGCCGGUGACUACAAUGCCAAGCAUA

1

0 transposon

LINE

Doc2

4022 AACAAAAAAAAAAAAAA

1

0 transposon

LTR

INE-1

4023 UUUCGAGUCGAAUAAAUGAUCCGUC

1

0 transposon

LTR

4024 GAAAAAUCAGGAGAAUGGAGACGGG

10 coding gene

CG9899-RA¦CG9899

4025 CAGCUCACAGAGGAGAGCAGAUGAGAGCA

1 no match

4026 ACCUCCGGAAAAGGAUUGGCUCUGA

1 no match

4027 GCACACAGAGGAGAGCAGAUGAAG

1 no match

4028 UCUCAUCGUCGUAGAACAAGGCCGA

1

1 Su(Ste)

Su(Ste)4029 UGACAAACGACGAAACGCUACGGGGAG

1 no match

4030 UGUUUCAUCGUUAGACGGCUCGGGUUA

1 no match

4031 UAUCCGUAAGGGUUGACAUAUUGCA

1

0 transposon

LTR

4032 ACAAGAUAUGACCAAAGCAAAGGCUA

1

1 transposon

DNA4033 AAACCUCGAAGAACGUCGACCUGGGC

1 no match

4034 UCGAAGGUAGUAACUAUGACGAUUUGACUUGUAACUCCGGGUCAAU

1 no match

4035 CGCCCCGUACUCUGUGGUGACCAACAC

1

1 transposon

LINE4036 UCUCAUCAUCGUAGAACAAGCCCGACUGUAACUCGGUCAAU

1 no match

4037 AUCUCAUCGUCGUAGGACAAGCCCG

14038 UCAACUGUGAGUCGAUCCUCAA

1 no match

4039 UAGUAUCUUCACCGUUGACUAGCCCC

1 no match

4040 GUCUCAUCGUCGUAGAACAAGCCCGUACUGUAACCUCGGGUCAAU

1 no match

4041 UAGGAAAAACCUAGUUACUUACGG
4042 UAGAUCUUCACCGUUGACUUGCCCCGU

Low̲complexity

F-elementDNA

2 Su(Ste)

1360

Su(Ste)2 no annotation
2 Su(Ste)

Su(Ste)AT-chX-B
CG4625-RA¦Dhap-at

17.6

DM88
1360

baggins

2 Su(Ste)

Su(Ste)10 Su(Ste)

Su(Ste)1

1 Su(Ste)

Su(Ste)4043 GCCCGGCUAGCUCAGUCGGUAGAGCAU

10 ncRNAtRNA

4044 CAGCACACAGAGGAGAGCAGAUGAGAGCACUGUAAUCGGGUCAAU

1 no match

4045 AGAUCUUCACCGUUGACUUGGCCCUCUGUAACUCGGGGUCAAU

1 no match

4046 AUCUCAUCGUCGUAGAACUAGCCCG

1

1 Su(Ste)4047 UGUUAUCCCUUAUAAGAUCCUCGAAA

1

0 transposon

4048 UUCAAGCCCGGGUAUUCAGAAGCC

1

1 repeattrf4049 UAAUAAUAAUAAAUAAAAGGUGACCGG

1

0 AT-chX

AT-chX-A

4050 AAUUCCGAUCUUGGACAUUCCCCGAUG

1 no match

4051 AUGAAAAACUGUGAGGGGAUCCUCAA

1 no match

4052 CAGCACACAGACGGAGAGCACGAUGAGACGCA

1 no match

4053 UUUUUUAGGCUUUGCAUGCUUUUGCG

14054 AUCGUCAUCGUCCGGUAGAACAAGCCCGA

1 no match

4055 UGUUUCAUCGUUAAACGGCUCGGGA

1

2 AT-chX

4056 CAUCUUCAACGUUUAAAGAUGGAU

1

0 no annotation

4057 CGUGGCGAAAGCGGCUCUCUGGU

1 no match

4058 GAGUCCUCAACUGUAAGGGGAUCCUCAA

1 no match

4059 CCUCGAUAGUAUAGUGGUUAGUAUCAC

1

1 ncRNA

4060 UUCGAUUACCUGGUUCGAUCCAAUG

1

0 transposon4061 GGAUCAACUGUGAGGGUAUCCUCAA

1 no match

4062 AACUGUGAGGGGAUUCUCAA

1 no match

4063 AAAAAUACAACUGUGAGGGGAUCCUCAA

1 no match

4064 GCUCCCAACUGUGAGGGGAUCCUCAA

1 no match

4065 UGGCCGAGGAUCCGAUUUUCUUUG

1

1 transposon

0 Su(Ste)

Su(Ste)
LTR

LINE

flea

G2
AT-chX-B

tRNA
LTR

Dm88

Su(Ste)4066 AGGAAUCAACUGUGAGGGGGAUCCUCAA

1 no match

4067 CUCGUCAUCGUCGUAGAACAAGCCCGGA

1 no match

4068 GUGGUUGGGAAGGUCAGGACAUUUA

1 no match

4069 UGACUCUACGUGACGGAACCGGAGUA

1

0 transposon

4070 UGAGAAGAUAUUGUACCCGUGAAUU

1

0 coding gene4071 UGAAUUUGGCCAGUAUUUCAUCU

1

0 transposon

LTR

DM88

4072 AUCGUCGUCGGGAUAGAAAAUCUCAUCGUCGUAGAACAAGCCGA

1 no match

4073 AGGACUUUUUUUCCGAUGAGCCAGUG

1

2 transposon

LINE

G2

4074 AAAAGUGGAAAUGAAGAAAGUACA

1

2 no annotation

4075 ACUCACUGUGAGGGGAUCCUCAA

1 no match

4076 UCUACCCAUGGAAUUCCGAGCUCCUC

1

0 transposon

LINE

G2

4077 UCUCAUCUCCGUAGAACUAGCCCGA

1

2 Su(Ste)4078 UCCUCAACUGUGAGGGGACCCUCAA

1 no match

4079 UUAAAUAAGACCCACACGCAAAUAAU

1

0 no annotation

4080 ACCAACGGGAUACCUCAUACUCGAGU

1

0 transposon

4081 UACUGUUUCAUCGUUAGACGGCUCGGG

1

2 AT-chX

AT-chX-B

4082 UCUGUGAUGCCCUUAGAUGUCCUGG

10 ncRNArRNA

4083 AUGGUUUCAUCGUUAGACGCUCGGGCCGUGUAACGUCGGGUCAAU

1 no match

4084 AAAAUCUCCGAUUGGUAUUAGCGAGUU

14085 UCUUCAUCCAUCGUAGAACAAGCCCGACGUGUAACUACGGGUCAAU

1 no match

4086 CAACUUGAGGAUCCUCAA

1

2 coding gene4087 UCCGAAGUGACAGACCGAAUCGCAAUUC

1

0 transposon

LTR

Quasimodo

4088 CCUGACGGACAGACUCAAGACCCUG

1

0 transposon

LTR

F

4089 UCCUGGCGUGCCCGGUACUCAGCUAU

1

1 transposon

LTR

Stalker

4090 GGUGAGGGUGCGAAUCCUCAA

1 no match

4091 GUAUGACCCCCUGGUACUGAAAUGCA

1 no match

4092 AGAAAAAAAAAAAAAAAAAAAAGACAUCCUCUAA

1 no match

4093 CGUUGACCAAUUUCCGAACAUACGCCUG

1

2 transposon

LTR

DM88

4094 CACCCGCGAGUAUAGUUACUUUAGUC

1

0 transposon

LTR

gypsy124095 UAGCGUUCGUUGACGUUGAUGGC

1

1 transposon

LTR

HMS-Beagle

4096 UCUCAUCGUCGUAGAACUAGCCUGA

1

1 Su(Ste)4097 UGUUUCAUCUUUUAGACGGCUCGGGC

1 no match

4098 AACGUUUGCGUUGUCUCUGAGGGAACC

1

1 coding gene

4099 UUUAACCCGAUAAAAAAGAAUAUC

1

0 transposon

4100 UGAUGACCGAAAUUUGGAAAAACAGA

1

0 repeat

ARS406̲DM4101 UCGUCUCGGGUGAAACUCAA

1 no match

4102 UAAAGAAAUCCUGACAAGAUCCCGGGC

1 no match

4103 AUCGUCUCGGGGAUGAAAUUCCGAGGAACCAAUUGAUCCAGCUG

1 no match

4104 UCUCAUCGUCGUAGAAGAAGCCCGAU

1

2 Su(Ste)

Su(Ste)4105 UUACAGUGAAAUGAAGAAAGUACA

1 no match

4106 CGAAAUGUUUCAUCGUUAGACGGCCUCGGGU

1 no match

4107 UCGUCAUCGUCGUAGAACAAGCCCGGAGGCG

1 no match

4108 GACUGCAGAUCGAGAGGUCCCCGUU

1

1 ncRNA

tRNA

4109 UUGGCCAGCAAAUUCGCUCAGUCGAA

1

0 coding gene

CG13391-RA¦Aats-ala

4110 UUCUUUGAAGAUGGCCCACAUAAA

1

0 repeattrf

4111 UGUUUCAUCGUUAGACGGCUCGGCCGAAA

12 AT-chX

AT-chX-B

4112 AUCGUCGUCGGGAUAGAAACGUUGACCAAUUUCCGAACAUGCGA

1 no match

4113 UCUCAUUGUCGUAGAACUAGCCCGA

1

1 Su(Ste)

Su(Ste)4114 GCCACACAGAGGAGAGCAGAUGAGAGCA

1 no match

4115 AGAAAUCUCAUCAUCGUAGAACAAGCCCG

1 no match

4116 AUCGUCUCCGGGAUGAAAACUGUGAGGGGAUCCCUCAA

1 no match

4117 UCGGAACGUUACCCCGAGGAUGCGGA

1

1 coding gene

CG8357-RA¦Rep1

4118 UAAAACAAUUGAAAGAUAAGACCCCAUA

1 no match

4119 CUCUACUGACUUCAGUAAGCCCCG

1

0 transposon

LINEbaggins

4120 GCCUAACGAGGUAGAUGACUCCUGGAA

1

0 transposon

LINE

Cr1a

4121 GGUGCAUAUCAUUCACGCCACGCUCCGA

1

0 Su(Ste)

4122 GCACACAGAGGAGAGCAGAUGAAGA

1 no match

4123 AUCGUCUCGGGGAUGAAAAUCUCAUCGUCGUAGAACAAGCCCCGA

1 no match

4124 AUGUUUCAUCGUCGUAGAACAAGCCCGA

14125 UCUCAUCGUCGUAGAACAAGCCCGCUCGUAACUCCGGGUCAAU

1 no match

4126 UCAUCUUCUUCUCGACGUUUACCA

14127 AUCGUCUCGGGAGUGAAAUAGUUUCUAUCGUUAGACGGCUCGGGC

1 no match

4128 AUUCGUCAUCGUCGUAGAACAAGCCCGGA

1 no match

4129 AACAAGAGUCACUUAUUUUUGCUACC

14130 UCUCAUCGUCGCAGAACAAGCCCCGA

1 no match

4131 UAGAUCUUCACCGUUGACUGCCC

14132 AACUUGAGAGUUUGAUCCUGGCU

1 no match

4133 UGUUUCAUCGUUAGACGCUCGGC

1 no match

4134 GUGAUGUCAACGUUUGAUCCCCUA

1

1 transposon

4135 UCUUCACCGUUGACUUGCCCGCA

1

1 Su(Ste)

4136 AAGAUAUGACCAAAGCAAAAGACAC

1

1 transposon

0 transposon

LINE

Rt1b
pseudogene

Su(Ste)LTR

LTR

micropia

opus
CG10117-RA¦ttv

Su(Ste)CG4841-RA¦CG4841
LTR

opus

Su(Ste)2 no annotation
1 transposon

LTR

ninja-Dsim-like

0 transposon

DNA

HB

2 Su(Ste)

Su(Ste)LTRninja-Dsim-like
Su(Ste)LINE

F4137 GAAUAUCGUCUCGGGACGUGAAAUACUCAUCGUCGUAGAACAAGCCCGA 1 no match
4138 CGCAAAAGUUGACCGAACUUGAA

14139 UCUCAUCGUCGUAGAACAAGCGUCGA

1 no match

1 ncRNArRNA

4140 CGUUGACCAAUUUCCGAACAAGCCCGA

1 no match

4141 AUGUUUCAUCGUUAGACGGCUCGGGA

14142 CCUCAACGUGAGGGAUUCUCAA

1 no match

2 AT-chX

AT-chX-B

4143 GUAGUGGCGAGCGAAAUGGGAUGAGC

1 no match

4144 CGAAAUGUUUCAUCGUUAGACGCCUCGGG

1 no match

4145 CCUCAUCGUCUUAGAACAAGCCCGA
4146 AUCUCAUCGUCGUAGAACAACCCCGAA

1

2 Su(Ste)

Su(Ste)12 Su(Ste)

4147 GAUUACCGAGGGCCGAGUACAUAUCGAG

1

0 transposon

4148 UCCGAACCAAUCGAUCCAGCUG

1 no match

Su(Ste)LTR

G4

4149 UAAGAUUGCGAUCUGGAGUUGCCCCC

14150 ACACUUCAACUGUGAGGGGAUCCUCAA

1 no match

2 transposon

DNA

1360

4151 AACCUCGAAGAACGUCGACCUGGGC

1 no match

4152 ACUCAACUGUGAGGGGGAUCCUCAA

1 no match

4153 CCGAACUUGAGACCCCAGCAGCUC

14154 CUCGGGAUGAAAGGAUCCUCAA

1 no match

4155 UAGGCUAAUCGGACAGGUGACUCG

1

0 transposon

4156 AUCUCAUCGGCGUAGAACAAGCCCGA

1

2 Su(Ste)

Su(Ste)4157 UGUUUCAUUGUUAGACGGCUCGGGU

12 AT-chX

AT-chX-B

4158 AUGUUUCAUCGUUAGACGGCUCGGGCCU

1 no match

4159 AUCCUCAACUGUGAGAA

1

1 coding gene

CG1666-RA¦Hlc

4160 UUCCGAGGAACCCAUUGAUCCAGCU

1

0 no annotation

4161 UCGAACCAGAGGCUGGAUCCUCAA

1 no match

4162 GCUCAUCGUCGUAGAACAAGCCCG

14163 AAAAUCUCAUCGUCGUAGAACAAGCCCGU

1 no match

4164 UGUUUCUUCGUUAGACGGCUCGGGC

1

1 AT-chX

4165 UACGUUUCUCCCUAAUGACUUCGUCCGA

1

1 transposon

LTR

qbert

4166 CCUCAACUGUGGGGAUCCUCAA

1 no match

4167 UAUAAUGCCAGAAUUUUAUUGGGG

12 transposon

LINEbaggins

4168 UGAACCUCGGGUACGUCUGCUCU

1 no match

4169 UUUCAUCGUCGUAGAACUAGCCCGA

1

1 Su(Ste)

4170 UAUCCGUAAGGGUUGACAUAUUGCU

11 transposon

LTR

DM88

4171 CUGUGAGGGGAUCCCUCAA

1 no match

4172 AACCAAUCCCAACCAAACCCGUCAA

1

0 transposon

LINE

G2

4173 UUCACCGUUGACUUGGCCCACACAU

1

0 Su(Ste)

4174 AUCUCAUCGUCGUAGAACAAGCCCUAG

1

2 Su(Ste)

4175 UGCACGUACCUGGAGAACAAUCAGA

1

2 transposon

4176 UCUCAUCGUUAUACGGCUCGGGC

1

2 AT-chX

4177 GAAUAUCGUCUCGGAGUGAAUAGAUCUUUACCGUUGACUUGGCC

1 no match

4178 UCAACUGUGAGGGGACUCCUCAA

1 no match

4179 CGAAAUACUGACUCGUGUACGUUCGUUGA

1 no match

4180 GACGUAGCUGGCCGAGGAUCCGAGUU

1 no match

4181 GGUACUUUUUUCCGAUGAGCCAGU

1

2 transposon

4182 UGAUGAUGUUACCCCUUACAAAAA

1

0 repeat

SAR̲DM

4183 UCUCAUCGUCGUAGAACAAGCCCGACU

1

2 Su(Ste)

Su(Ste)4184 AUGUUCAUCGUUAGACGGCUCGGG

1 no match

4185 UAAAGAUAAAUAUGACCGAUUGCGU

14186 CAGCACACAGAGGAGAGCAGAUGAGAGAA

1 no match

4187 CACCGGGUUUUGGCACUUUGCCGCGG
4188 UAAUGCCCCGAAGGUAGCCCUCUGU

0 no annotation
LTR

1 Su(Ste)GATE

Su(Ste)AT-chX-B

Su(Ste)Su(Ste)Su(Ste)LTRninja-Dsim-like
AT-chX-B

LINE

G2

0 transposon

LTR

mdg1

1

0 transposon

LINE

R1

1

1 transposon

LINER1-element4189 UGAUAUGACGCGUGACAUGCCACA

1

0 transposon

LINE

G2

4190 GCUGUGCGUUCGUGGAGACGACCCGA

1

0 transposon

LTR

ninja-Dsim-like

4191 AUCGAAAUCUCGGUGGGCAGUAGACCCG

1 no match

4192 UUAUAAGGAUGAUGAUACCGAUUAAAGG

1

0 no annotation

4193 UUCGUAGAGAUGUCUCGGGAACCAUAA

1

1 coding gene4194 UACGCGCGGCAGGACGGAAAGACC

1 no match

4195 GAAUAUCGUCUCGGGAGUGAAAUACUCAUCAUCGUAGAACAAGCCCGA

1 no match

4196 UUAUAAGGAUGAUGAUACCGAUUAAU

14197 CAAGAUAUGACCAAAGCAAUACUA

1 no match

4198 UCUCAUCGUCGUAGAACAAGACCCGA

1 no match

4199 UCGUCCUAAGAUGAUGUGACCCCAGA

1 no match

4200 AGAUGGUGCGAGAACCCAGAGUA

14201 UGGGAUCGAUUGGAAAUAACCUGA

1 no match

4202 AUCGUCAGUCAAGUCGUAGAACAAGGGCCCGACG

1 no match

4203 UUGGGAACACCGCGUGUUGUUGGCC

10 ncRNA

4204 CAAGAUAUGACCAAAGAAUGACCA

1

0 transposon

4205 AGGGCCCGCCUGACCUUGAAUCA

1 no match

4206 GAGGAACUCGUUGCCUUUGAUUCCGA

14207 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACCGGGUCAAU

1 no match

4208 UGUUUCAUCUUUAGACGGCUCGGA

14209 AAUCCUAACUGUGAGGGGAUCCUCAA

1 no match

4210 AGGAUCCUCAACUGUGAGGGAAUCCUCAA

1 no match

4211 UAGAUCUUCACCGUUGACUUGCCCCCG

14212 UAGUAUCUUCUACCGUUGACUUGGCCC

1 no match

4213 ACCGGAGAAGACGUUGAAUGGAUC

1

0 no annotation

4214 GAAGACCCCAGGUAGUGAUUGUAUCC

1

0 coding gene

CG3506-RA¦vas

4215 GCAAAAGAAACCAGAGGACAACCUGAA

1

0 repeattrf

4216 AGUAGAUCUUCACCGUUGACUAGCCC

10 Su(Ste)

Su(Ste)4217 CGUUUCAUCGUUAGACGGCUCGGGA

1

2 AT-chX

4218 CGUGGACGAGUUGCUCGAUUUGUACGU

1

0 transposonLow̲complexity

F-element

4219 AAAUGCGAGUGAAGCCCGGAAUAAACUU

1

0 transposonDNAtransib2

4220 UCAAUGUUGGCCCCAGAAUACGCAG

1

1 no annotation

4221 AAUCCUCAACUGUGAGGAUCCUCAA

1 no match

4222 UGAGACCGCCCCUGGACAACCCACUAA

12 Su(Ste)

Su(Ste)4223 UAAGAAAAUGUCCGGACAGCUG

1

0 Su(Ste)

Su(Ste)4224 AUCUCAACUGUGAGGGAUCCUCAACG

1 no match

4225 UGUUUCAUACCUUGAGCCAACUGAUC

14226 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAA

1 no match

4227 UGGACCUUUUUCCGAUGAGCCAGU

14228 UCAACUUGAGGGGGAUCCUCAA

1 no match

4229 UGUUUCAUCGUUAGACUGCUCGGCC

14230 GGAUCCUCAACUGUGAGGGAUCAA

1 no match

4231 UCUCACCCGUCGUAGAAGAAGCCCCGA

1 no match

CG3338-RA¦CG3338

1 no annotation

0 coding gene

CG11719-RA¦Mst98Ca

5SrRNADNA

1360

0 Su(Ste)

Su(Ste)2 AT-chX

AT-chX-B

1 Su(Ste)

Su(Ste)AT-chX-B

0 transposon

LTR

gypsy6

1 transposon

LINE

G

2 AT-chX

AT-chX-B

4232 UCCUCAACUGUUGAGGAUCCUCAA

1 no match

4233 UAUAGACCGAUUAGUCUGCUGACAA

1

0 transposon

LINE

G2

4234 CAUGCUCGAGAUGACAACCUUGGACC

1

0 transposon

LTR

micropia4235 UAAGUAAGCCCGAAGAUUGUCCAA

1

0 transposon

LTR

opus

4236 UAAUAUUGGACCCAGUACACUGCC

1

1 transposon

LINE

Doc

4237 UAACAUCAUCAUCUGACUCGCAAUU

1

0 transposon

DNA4238 AUCAUCAACUGUGAGGGGAUCCUCAA

1 no match

4239 AUGUUUCAUCGUUAGACGGCUCGGGUC

1 no match

4240 UCUCAUCGUCAGAACAAGCCCGA

1 no match

4241 UCUCAUCGUCGUUGAACUAGCCCG

14242 CAGCACACAGAGGAGAACAGAUGAGAGC

1 no match

4243 UACAAGCAAGACCACCACACCCGA

1

0 transposon

4244 UGAAAGAUUACUCAGAGAACAACU

1

0 coding gene

CG12288-RA¦CG12288

4245 GCUGGCCGAGUAUUUGAUGUUCU

1

0 Su(Ste)

Su(Ste)4246 UACUCAUCAUCGUAGAACAAGCCGA

1 no match

4247 UCUCAUCAUCGUAGAACAAACCCAA

1

2 Su(Ste)

Su(Ste)4248 AAGAUCUUCACCGUUGACUUGGCCCAU

1

2 Su(Ste)4249 UUUCCUGGCUAGGUUGUCCGCUA

1

0 transposon

LINEbaggins

4250 CUGAUGACCUGAUGACUCUUUGACA

1 no match

4251 UUGUUACUUCCCGUGUUCAGCUUU

1

0 transposon

LINE

Doc3

4252 CGAAAUGUUUCAUCGUUAUACGGCUCGGGC

1 no match

4253 UUCCGAGGAACCAAUUGAUCCAGCUCC

1

1 Su(Ste)

Su(Ste)4254 GUAACUUCGGGAUAAGGAUUGGCUUUAA

12 ncRNArRNA

4255 CAGCACACAGAGGAGAGCAGAUGAGGGCA

1 no match

4256 CAAGAUUUGACCAACGCAAAGACUA

1 no match

4257 UACGGAACGAGAGACGCGACUCGGAU

1 no match

4258 AAUCCUCAACUGUGAGGGAAUCCUCAA

1 no match

4259 ACCAAGAUAUGACCAAAGCAAAGAC

1

2 transposon

4260 AUGUUUCAUCGUUAGACGACUCGGGC

1

2 AT-chX

4261 GCCAAUUUACAUUUAGACGAGACGGCCCC

1 no match

4262 GCACACAGAGGAGGGCAGAUGAGAGCG

1 no match

4263 UUCCUCGGGAUCAAGGGCAACGAGUA

1

1 Su(Ste)4264 UCCCUACAAUGUUAUCCAGGACCCCA

1

1 transposon

LINE

Rt1b

4265 UUAGCUUCAUCCAAGCGAACUGUCGCCC

1

2 transposon

LINE

R1

4266 CUCAACUGUGAGGGGAUCCUCGAA

1 no match

4267 UCUCAUCUUCGUAGAACAAGCCCGGA

1

2 Su(Ste)4268 UCCGAUUUGGCGCAAAGAGAUGGAC

1

1 transposon

LTR

ninja-Dsim-like4269 UUCGCAGAAUAAAUAUACGCCCGGUC

10 transposon

LTR

GATE

4270 AUAACGUUCGGGAUAAGGAUUGGCUCUGGA

1 no match

4271 CAAGAUGUGACCUAAGCAAAGACACU

1

1 transposon

DNA4272 AACUGUGAGGGGUCCUCAA

1

2 no annotation

4273 CAGAUCUUCACCGUUGACUUGGCCC

11 Su(Ste)4274 AUCCUCAACUGUGAGGGAUCCCUCAA

1 no match

4275 GGUAGAGCUCGUUUGAUUUUGACCA

1

0 transposon

LINE

X

4276 GAGAGCUCUGAUGACGAACCCGG

1

0 transposon

LINE

G6

4277 GUCGCCUGCUGACGGGGCCCGAAAAA

1

1 transposon

LTR

opus

4278 AGUUUCAUCGUUAGACGGCUCGGG

1

1 AT-chX

AT-chX-B

4279 UGGGCCGAACACUUUGAACCAAGUAU

1

0 Su(Ste)

Su(Ste)4280 UUCACCGUUGACUAGCCCCACACAUC

10 Su(Ste)

Su(Ste)4281 UCCGAACGUACCACGGUGCCCCAGUGCUGUAAUCGGGUCAAU

1 no match

4282 UCCUAACUGUGAGGGGAUCCUCAA

1 no match

4283 AGUCAUGCGAGGCGAAACCGGGUUCA

1 no match

4284 AUGUACUGUUUGUAGGUGUACUGGCC

1

1 transposon

LINEbaggins

4285 UGACAAAAUGGCCGAAGUUAUCAAA

1

0 transposon

LINE

BS

4286 GAUCCAUGGCAACUUCUGUCGGGUCAAU

1 no match

4287 GAGUCUCGAACUAGGUGAGGAGAGUCCUCGAA

1 no match

4288 UAGAAGAAACAUUGAAGCGCUUGAC

1 no match

4289 UGUACUGUUUGUAGGUGUACUGACC

1

0 transposon

LINEbaggins

4290 ACUCAACUGUGAGGGAUCCUCAA

1 no match

4291 UGGACUUUUUUUCCGUAUGAGCCAGU

1 no match

4292 UAUAAGAUUGGACCCAGUACACUGCCUU

1

0 transposon

LINE

Doc

4293 UGUUUCAUCGUUACGACGGCUCGGG

1 no match

4294 AUUCGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

4295 CUCAACUGUGAGGAGGAUCCUCAA

1 no match

4296 AAAAGGUAGGAAAUGAAGAAAGUACA

1 no match

4297 AUCGUCUCGGGACUGAAAGGUUUCAUCGUUAGACGGCCUCGGGC

1 no match

4298 GCCCCGGUACUCUGUGGUGACCAACACG

1 no match

4299 UCUCAUCGUCGUAGAACAAUCCCGAG

1

1 Su(Ste)

4300 UCCUGUUGAUGUGAGGGUCCCAAG

1

1 transposon

LINE

G2

4301 GGGGCGACACUCGGGCUCACGGC

1 no match

4302 UAUAAUCGCCCCGAAGGUUUGCCCUCUG

1 no match

4303 UGUUUACCCAGAAACAAUG

1

0 transposon

LINE

HMS-Beagle24304 CUUGACGGAGCUCACUUACCUAAUGUA

1

1 transposon

LINER1-element4305 AUGUUUCAUCGUUAGACGGCUCGGGCCUU

1 no match

4306 GGAUCCUUAACUGUGAGGGAUCCUCAA

1 no match

4307 AUCGUACCAUAGGACCCGGUCCCUAAA

1

0 transposon

LINE

F

4308 UCUUCUUCUCGACGUUGACCAGCCUC

1

0 transposon

LTR

ninja-Dsim-like

4309 UGUUUCAUCGUUAGACGGCUCGAGAUUC

1 no match

4310 AUCUCAUCGUCGUUAGAACAAGCCCGA

1 no match

4311 AUCGUCUCGGGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGGCC

1 no match

4312 ACGUGAGGGGAUCCUCAA

1 no match

4313 AAUCUCAUCGUUAGAACAAGCCCGA

1 no match

4314 GACAAUGACGACCAGCCCAGUACC

1

1 Su(Ste)0 coding gene

1360

Su(Ste)LTR

gypsy12

Su(Ste)LINE

Cr1aAT-chX-B

Su(Ste)Su(Ste)1360
Su(Ste)Su(Ste)CG18749-RB¦CG18749

4315 UGUCAACGUUUGAUCCCCUGGAUUCC

1

0 transposon

4316 CUUCGGGAUAAGGAUUGGCUCUA

1

1 ncRNA

LTR

ninja-Dsim-like

4317 UUCGUUAGCCCGUCCGUUUCUCGAGA

1

1 transposon

4318 UCUCAUCGUCGUAGAAGAAGCCCGGA

1

2 Su(Ste)

Su(Ste)4319 UACCAUUAUUUUGGCCAUGCUCGACUC

10 coding gene

CG31911-RA¦Ent2

4320 ACCGGACGUGCUGUGGCCCGUAUUCCCC

1

0 coding gene

CG5502-RA¦RpL4

4321 GGAUCGAACUGUGAGGGGAUCCUCCAACG

1 no match

4322 GGUCCCAACUGUGAGGGAUCCUCAA

1 no match

4323 UAAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

4324 GAAGAUGUCCGGACAGCUGGGCCCGAA

1

0 Su(Ste)

Su(Ste)4325 CUCUCAUCGUCGUAGAACUACGCCCGUA

1 no match

4326 AUCCGAACGUACCACGGUGCCCCAGUG

1

1 transposon

4327 UAGAUCUUCACCGUUGACUUGCCCCCUC

1

1 Su(Ste)4328 UGCUCUCGAAUGUAAUGCCCGAUAUA

1 no match

4329 AUGUUUUCAUCGUUUAGACGGCUCGGGCCC

1 no match

4330 UAAGCCCCGUACUUCUGUGGUGACCAA

1 no match

4331 GUAUGACCCCCUGGUACUGAAAUGCAGA

1 no match

4332 GCUGAUCACGUCUCGCGAACCUUGGU

10 transposon

LINER1-element4333 UGUUUGUAGGUGUACUGACCCAGU

1

0 transposon

LINEbaggins

4334 GGGAACACCGCGUGUUGUUGGCCU

10 ncRNA

5SrRNA

4335 AUCGAUCUUCACCGUUGACUAGCCCC

12 Su(Ste)

Su(Ste)4336 AUCGUCAUCGUCGUAGGAACAACGCCCGA

1 no match

4337 UACAAUCUCCGAGCAAGACCCCGACUGUAACUCGGGGUCAAU

1 no match

4338 GAAGCCGUCGAGAGAUAUCGGAAGAGU

10 ncRNArRNA

4339 CCUCAACUGUGAGGGAUCCUCAAA

1 no match

4340 CCUCAUCAUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)4341 GAACUCAUCCUACUCGCUAGACGCAC

1

1 ncRNA

4342 UCUUGUUUCAGAGCGUUGGCCACG

1

2 transposonLow̲complexity

F-element

4343 UGUUUUCAUCGUUAGACGGCUCGGGCUGUAACUCGGGGUCAAU

1 no match

4344 AGUCUCGGGUGAAAGGAUCCUCAA

1 no match

4345 AAAGAAACCCGAUUCCUCUUCCAUGAG

1

2 transposon

LINE

Doc4

4346 UCAACUGUGACCUCAA

1

1 no annotation

4347 UCAUCUUCUUCUCGACGUCGACCAG

1

1 transposon

LTR

ninja-Dsim-like4348 GAAAUCGUCAUCGUCGUAGAACGAAGCCCGA

1 no match

4349 CGAAAUAGAUCUUCACCGUUGACCUAGCCC

1 no match

4350 GACGCCGAGUGGAAUCCAGGGAGCAUA

1

0 transposon

LTR

ninja-Dsim-like

4351 UUGGUUAGAAAACAACCAGGACUAUA

10 Su(Ste)

Su(Ste)4352 UCUCAUCGUUGUAGAACAAGCCCUAG

1

2 Su(Ste)

Su(Ste)4353 GAAUUGCUUACCGUGGGUUGUCCAG

1

1 Su(Ste)4354 GCUCCGAUCUCCUGAGUCGAACUCCGA

1

1 transposon

LINE4355 UGUUUUCAUCGUCAGACGGCUCGGGC

1 no match

4356 AUCGUCUCGGGACUGAAACUAGAUCUUCACCGUUCACUACGCCCA

1 no match

4357 CAACUGUGAGGGGAGUCCUCAA

1 no match

4358 UCCUCAACUGUUGAGGGAUCCCUCAA

1 no match

4359 UAAAAAAAAAAAAAAAA

1

0 transposon

LTR

17.6

4360 UGUUAAUAAGACCCCGUUUGUUUC

1

0 transposon

LTR

297

4361 AGAAAUCUCAUCGUCGUAGAACAACGCCCG

1 no match

4362 UCAUCUUCUUCUCGACGUUCGACCA

1 no match

4363 UAGAUCUUCACCGUAGACUUGGCCCA

1

1 Su(Ste)

Su(Ste)4364 UCUCAUCGUCGUAGAACAAGCCGG

1

1 Su(Ste)

Su(Ste)4365 UCUCAUCGUCGUAGAACGAGCCCCGA

1 no match

4366 UACAAUCUUCGAGCAAGACCCCGA

1

0 transposon

4367 UCUCAUGUCGUAGAACAAGCCCGA

1

2 no annotation

4368 UCUCAUCGUCGUAGAACAAGCCCCUA

1

2 Su(Ste)4369 UGUUUUCAUCGUUAGACGGCUCGGGG

1 no match

4370 GCCCGUAGUGAUGAAGACAGAGCCA

14371 CAGCACACAGAGGAGAGCAGAUGAGAGGCA

1 no match

4372 AAAUAUUGGCGCGGUCAUCGGAACUG

14373 CAGCACACAGAGGACGAGCAGAUGAGAGCA

1 no match

4374 AAAACCCUGAAGAUGAUCCUGAGUC
4375 UUGUUGAUCAGUUUACACAUUAUUG
4376 CAAGCACACAGAGGAGAGCAGAUGAGAGCA

1 no match

rRNA
LINE

Low̲complexity

Cr1aF-element
Su(Ste)alphagamma-element

Su(Ste)LINE

R1-element

Circe
Su(Ste)0 transposonLow̲complexity

F-element

0 transposon

LTR

ninja-Dsim-like

1

2 transposon

LINE

Helena1

0 transposon

LINE

Cr1a

4377 UGUUUCAUCGUUAGACGGCUCGGCCGUGUAACUACGGGUCGAAUAUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGAACAAGCCCGA
1 no match
4378 GUAUCGUCUCGGGACUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

4379 UGACUUGAGGAUGGCUUCGAUGUUG

10 transposon

LINE

X

4380 CCCCGUACUCUGUGGUGACCAACACA

1

0 transposon

LINEbaggins

4381 AGAUGACCGAAAUUCGGAAAGACGG

1

1 repeat

SAR̲DM

4382 UCACAUCGUCGUAGAACAAGCUCG

1

2 Su(Ste)

Su(Ste)4383 CAACUCACAGAGGAGAGCAGAUGAGAGCA

1 no match

4384 UUUUUCAUCGUUAGACGGCUCUGGC

12 AT-chX

AT-chX-B

4385 AUCCCAUCAUCGUAGAACAAGCCCGA

1

2 Su(Ste)

Su(Ste)4386 UAAGAUCGAAUCUGUUACGGCCCUU

1

0 repeat4387 UACUGAGUCGAUUACCGAGGGCCGA

1

0 transposon

4388 UCCUCAUCGUCCGUUAGAACCAAGCCCCGACU

1 no match

4389 UCCAUAUUCAGACAAUUAUUUUAAGU

1

1 repeat4390 GGUACGACCCAAGUAGGACUAUUGU

1

0 transposon

4391 UCUCAUCGUCGUAGAACAAAGCCCGUACUGUAACCUCGGGUCAAU

1 no match

4392 UCUGCUUCAUCGUUAGACGGCUCGGG

1

1 AT-chX

4393 UAUAGGACCCCAUUACAAUUGUAA

10 transposon

DNA4394 AGAAAUUGUUUCAUCGUUAGACGGCUCGGGC

1 no match

4395 CAAGAUAUGACCUAUGCAAAGACACU

1

1 transposon

DNA4396 UGUUUCAGAGCGUUGGCCAGUUUUCC

1

2 transposonLow̲complexity

F-element

4397 CCUCAUCCUACAGACCAAUCAGUCUCCC

1

1 transposon

LINE

Doc2

trf
LTR

G4
SAR̲DM

LTR

297
AT-chX-B
1360
1360

4398 UCUCAUCGUCGUAGAACCAGCCCG

1

1 Su(Ste)

4399 UCAACUGUGAGGUCCUCAA

1

2 no annotation

Su(Ste)4400 AUCCUCAACUGUGAGGGAUCCUCGAA

1 no match

4401 AGAACUAUCAACCGUCAGGUGCCCCA

1

0 transposon

4402 GCUGGCCGAGUAUUUGAUAUUCUUU

1

0 Su(Ste)

4403 AGGAAUUCAACUGUGAGGGGAUCCUCAA

1 no match

4404 AUCUCAACUGUGAGGGAUCCUCAA

1 no match

4405 UAACUAAGAACCGUGAGAUAUCGCUAA

14406 GUCUCGGGAUAAAGGAUCCUCAA

1 no match

4407 CACGGAGUACGGGGCUUACUAAAGUC

1

1 transposon

LINEbaggins

4408 AUGAUUCCGAUCUUGGACAUUCCCGA

1

0 transposon

LTR

roo

4409 AAGUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

4410 UUGUAAUGACCCCCCAUAAAAAAUUGGA

1

1 repeat4411 GAUGUCCACCAAAGGCAUGCCCGAUGU

1

0 transposon

LTR

opus

4412 UAAGAUUGCACCCAGUACACUGC

1

1 transposon

LINE

Doc

4413 UCUCAUCUUCGUAGAACAGGCCCGA

1

2 Su(Ste)4414 UCUCGAUCGUCGUAGAACAAGCCCGUCG

1 no match

4415 ACACCUUGACGGAGCUCACGUACC

14416 AUACUACACUCGUCGUAGAACAAGCCCGA

1 no match

4417 UUCUCAUCGUCGUAGAACAGGCCCGA

1

1 Su(Ste)4418 UAGAUCUUUACCGUUGACUUGGCCC

1

0 no annotation

4419 AAUUUAAGCAUAUUAAUUAGGGGAGG

10 ncRNA

4420 GGAUCCCAACUGGAGG

1

1 coding gene

4421 GCAUACAUGCCCAGGAGUCUGUUCA

1

1 transposon

LINEbaggins

4422 UUCCCGUGUCUUCCGUGUUAAGGUCU

1 no match

4423 UAAAUUUUUCAUCGUUAGACGGCUCGGGC

1 no match

4424 ACAUGUCGAGCUCCCAGAACAACAACA

1 no match

4425 UGUGUUGACUGGAAGUGCCUUCAUA

1

0 transposon

LTR

mdg1

4426 UUCCCAUCGUCGUAGAACAAUCCCGA

1

2 Su(Ste)

Su(Ste)4427 ACUAACUUCCAUCCUAAAACUGAUAC

1 no match

4428 UGUUUCAUCGUUAGACGGGCUCGGGU

1 no match

4429 GAAUGUAAAAUUCUCGCCUCCUCU

1

0 AT-chX

AT-chX-B

4430 CACGCCACGCUCCGACCUGAUGUA

1

0 Su(Ste)

4431 CAAGAAAUGACCUAAGCAAAGACAC

1

1 transposon4432 UCUCAUCGUCGUAGAGCAAGCCCUA

1

2 Su(Ste)4433 CAAGUACCGGAGUAUGUGCUUCACA

1

0 transposon

LTR

4434 CGGGAUGAAAUCUCAUCGUCGUAGAACAAGCC

1 no match

4435 CAGCACACAGACGGAGAGCAGAUGAGACGCCA

1 no match

4436 UGUUUCAGAGCGUUGGCCAGUUCCG

1

2 transposonLow̲complexity

4437 AAUGUUUCAUCGUUAGACGGCUCGGG

1

2 AT-chX

AT-chX-B

4438 UCUCCUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)LTR

opus
Su(Ste)0 no annotation

1 transposon

SAR̲DM

Su(Ste)LINE

R1-element
Su(Ste)rRNA
CG15099-RA¦CG15099

Su(Ste)DNA

1360
Su(Ste)1731

F-element

4439 AUCGUCUCGGGACUGAAACUCUCAUCCGUUCGUACGAACAACCGCCCGUACUGUACUCGGGUCAAU
1 no match
4440 UCUCAUCGUCGUAGGACAAGCCG

1

2 Su(Ste)4441 CCCCGUACUCUGUGGUGACCAACACACC

1

0 transposon

LINEbaggins

4442 AUACCUCAACUGUGAGGGAUCUCAA

1 no match

4443 UCUACUUCCCACCUAGACACUCGACG

1

2 transposon

LINE

G2

4444 CCAGGCCCAUCUGGUUGAACGUGUCCU

1

0 Su(Ste)

Su(Ste)4445 UUCGCGAUGUACGAGUUGGCCAAGGA

1

0 coding gene

CG8859-RA¦Cyp6g2

4446 CCGAACGUACCACGGUGCCCCAGUCUGUAACUCGGGGUCAAU

1 no match

4447 AUCUUCAUCGUCGUAGAACAAGCCCCGA

1 no match

4448 UUCUCAUCGUCGUAGAACAAGCCCCG

1

2 Su(Ste)

Su(Ste)4449 UCGUCUCGGGGAUGAAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

4450 AUUAAUACCCAGGUGAUUACCACUAUU

12 Su(Ste)

Su(Ste)4451 UUAGGUGUAGGCGCAGCGAAAGCUAGU

1 no match

4452 UAGAUCUUCACCGUUGACUAGCCCCCUGUAACUCGGGGUCAAU

1 no match

4453 UCGAUCUCCUGAGUCGGACUCCGAG

14454 AGAAAAAAAAACCUGGAAGAUGAUCCUGAGUCGC

1 no match

4455 CCCAAUCAGUUUUUAUCUGCAGAGAUG

1 no match

4456 AUCUCAUCGUCGUAGAACAAGCCCGAAG

14457 CUUAUAAGGAUGAUGAUACCCGACUAAA

1 no match

4458 GAUGGGGGACCGCUUGGGAACA
4459 UACUCAUCUUCGUAGAACAAGCCCGA
4460 AAUCCUCAACUGUGAGGGGUCCUCAA

1 no match

4461 GCAAUUUUGGCCGUCACUAAAAAAGU

1

0 transposon

4462 UUCAAGGUUACCCCAGGAUGCUGUGUC

1

1 repeat4463 UCUCGAUCUUCGUAGAACAAGCCCGACG

1 no match

4464 UUCAGAUGAAGACUGCGAUACCCCA

1

1 transposon

4465 CUGUUUCAUCGUUAGACGGCUAGGG

1

1 AT-chX

4466 CAGCACACAGAGGAGAGCAGAUGGGAGCA

1 no match

4467 UAAAUGCCAGAAUUUUAUUCGGGGUUC

1 no match

4468 UUUAUCUGCAGAGAUGUAUGAACGAA

1

0 transposon

4469 UUCUCAUCGUCGUAGAACAAUCCCG

1

1 Su(Ste)

Su(Ste)4470 UAGAUCUUCACCGUUGACUUGCCCCAA

1

1 Su(Ste)

Su(Ste)4471 UCGUCAGUCGUCGUAGAACAAGCCCGA

1 no match

4472 AUUCACUUCUUCUCGACGUUGACCAG

1 no match

4473 GCCCCGUACUCUGUGGUGACCAACAU

1

0 transposon

4474 UAGAUCUUCACCGUUGACUAACCCCC

1

2 Su(Ste)4475 GUAGAUCUUCACCGUUGACUUGGCCCA

1

0 Su(Ste)4476 UAUAAUGCCCCGAAGGUUGCCCUCU

1

0 transposon

LINER1-element4477 AUCGUCUCGGAUGAAAUACUCAUCGUCGUAGAACAAGCCCGAC

1 no match

4478 UGCACGGACCUGGAGAACAACCAGA

1

0 transposon

LTR

ninja-Dsim-like4479 UCUCAUCGUCGUAGAACAAUACCGA

1

2 Su(Ste)

4480 CGCGCAGGUUCAAAUCCUGCAGUUGUCGCC

1 no match

1 transposon

Su(Ste)LINE

R1

1 Su(Ste)

Su(Ste)10 ncRNA

5SrRNA

12 Su(Ste)

Su(Ste)
LINE

Fw3
trf

LINE

Cr1a
AT-chX-B

LTR

LINE

gypsy8baggins
Su(Ste)Su(Ste)Su(Ste)4481 UAGAUCUUCACCGUUGACUAGCCCCUA

1

2 Su(Ste)4482 UAUGCAAUAUUUGUUGCGCCCCGGG

1

0 transposon

4483 AUACUCAUCGUCGUAGAACAAGCCCGAA

1

2 Su(Ste)

Su(Ste)4484 UGUUUCACCGUUAGACGGCUCGGGC

1

1 AT-chX

AT-chX-B

4485 UAUAGAGUGAUGCCGAGUAUAAAAG

1

1 repeattrf

4486 UAAUUUCCCGGAAAUGUGCAAACGAC

1

1 no annotation

4487 GCAUCCUCAACUGUGAGGGAUCCUCAA

1 no match

4488 UGUUUCAGCGUUAGACGGCUCGGGC

1

1 AT-chX

4489 UCUCAUCGUCGUAAAACAAGCCCAA

1

2 Su(Ste)

4490 AAACCUGAAGAUGAUCCUGAGUU

1

1 transposon

4491 UUCUCAUCGUCGUUAGAACAAGCCCGA

1 no match

4492 CCAGGCCCAUCUGGUUGAACGUG

10 Su(Ste)

Su(Ste)4493 UCUCAUCGUCGUAGAACUAGCCCGAAA

12 Su(Ste)

Su(Ste)4494 AAGGGGAAAUGAAGAGGAUCCUCAA

1 no match

4495 UUUUUAAAACAAUUGAAAGAUAAGACCCA

14496 UAACGAGGUAGAUGACUCCCUGGAA

1 no match

2 transposon

Su(Ste)LTR

opus

AT-chX-B
Su(Ste)LINE

LTR

Helenacopia

4497 UCUCAUCGUCGUAGAACAAGCCCCGACUGUAAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAAUCUCAUCGUCGUAGAAGAAGCCCGA
1 no match
4498 AAAAACUGUGAGGGAUCCUCAA

1 no match

4499 UUCCGAGGAACCAAUGGAUCAGCU

1 no match

4500 AUCGUCUCGGGGAUGAAAUAGAUCUCCACCGUUGACUAGCCCCC

1 no match

4501 UGAUACCGAGAAUGACAAUGUUUGA

1

1 transposon

LTR

gypsy34502 UCUGUACAAGCAAGACCACCACACCCG

1

0 transposon

LTR

gypsy124503 CGAAACCCAAAGGAUACUCGAAGACACCACGG

1 no match

4504 UUUGACAAAAUAUGCCCUUCACCAUA

1

0 transposon

DNA4505 ACUCAUCGUCGUAGAACAAUCCCGA

1

2 Su(Ste)4506 UGCCAAAUCAUUCACCCGGUCAAUAACC

1

0 transposon4507 AUCUCAUCGUCGUAGAACAAGUCCGAG

1

2 Su(Ste)

4508 AAAAACCUAGAAGAUGAUCCUGAGUCGC

1 no match

4509 GCCCCGGUACUCUGUGGUGACCAACAACG

1 no match

4510 UGACCCAGUCGGAUCUAUUGUACUACC

14511 UCUCGAUCGUCGUAGAACAAGCCCGCGUGUAACGUCGGGUCAAU

1 no match

4512 GAUCUUCACCGUUGACUUUGCCCA

1

1 Su(Ste)

Su(Ste)4513 AUAGAUCUUCACCGUUGACUUGCCCCC

1

1 Su(Ste)

Su(Ste)4514 CAGCACACAGGAGGAGAGCAGAUGAGACGCA

1 no match

4515 CAACACGAAGACCCAGUAUACCGUA

14516 AUCUCAUCUCGUAGAACAAGCCCGA

1 no match

4517 ACCGAUGAGCCAGUGGAGUUGCUUA

14518 AAAAACAACUGUGAGGGAUCCUCAA

1 no match

4519 AUCUCUACCGUCGUAGAACAAGCCCGA

1 no match

4520 CGCACACAGAGGAGAGCAGAUGAGAGA

1 no match

4521 GAAAUGAAGAAAGUACAAGGUUGUAU

1 no match

4522 UACUUUUUGUAGGUGUACUGACCCAG

14523 CUCAACUGUGAGGGGUAUCCUCAA

1 no match

4524 AUGUUUCAUCGUUAGACGGCUCGGAC

14525 UAUCAUCGUCGUAGAACAAGCCCCGA

1 no match

4526 GACAUCGAGCGGUCAAUAACCCAUAG

1

0 transposon

4527 UAGAUCUUCACCGUUGACUAGCCCAAA

12 Su(Ste)4528 GGUAACGGGAGGGUAUGAUAUGGAGG

1

0 transposon4529 UGUUUCAUCGUUGACGACUCGGGC

1 no match

4530 CAUCGUCGUAGAACAAGCCCGA

1

0 Su(Ste)

4531 AAAGACGUGCAACUCUACGGCCCGG

1

1 transposon4532 UAUAUCUUCACCGUUGACUAGCCCC

1

1 Su(Ste)4533 UGACGACCCAGCAGCAGCUAUCGAA

1

0 no annotation

4534 GAUCCUCAACUGUGAGG

1

1 coding gene4535 UUCGUGACGAGAACUCGAGCCGACGAAAAA

1 no match

4536 CCCCGUACUCUGUGGUGACCAAGACC

1

0 transposon4537 UAGAUCUUCACCGUUGACUAGUCCCCA

1

2 Su(Ste)

Su(Ste)4538 UAGAUCUUCACCGCUGACUUGGCCCA

1

1 Su(Ste)

Su(Ste)4539 GUCUCGGGAUGAUCUCAA

1 no match

4540 AUACUGUUUGUAGGUGUACUGACCCAGCUGUA

1 no match

4541 AGGUGAAUACUCGAGCGCCAUCGAGA

1

1 coding gene

CG7185-RA¦CG7185

4542 CUGACGAAUACCAUUGGGGGUAGAGCA

1 no match

4543 UCUAGGCUGAGCGGAGAACCAGAGGU

14544 CCUCAACUGUGAACUGUGAGGUCAA

1 no match

4545 GAGAGGCGCCGUAGUUACCACCUC

1

1 no annotation

4546 ACCUCACGACAUCGAGCGAUUGC

1

0 coding gene

CG40748-RB¦CG40748

4547 CAACUGUGAGGGGUAUCCUCAA

1 no match

4548 UGUUUUCAUCGUUAGACGGCUCGGCCG

1 no match

4549 AUCUCAUCGUCGUAGAACAAGCCCCUA

1 no match

4550 UCGGGAUGAAAUCCUCAACUGUGAGGGAUCCUCAA

1 no match

4551 GAUUGCCAUAUUGCGGGAUUAUCUC

1

0 coding gene

CG12717-RA¦CG12717

4552 UUCGCAAAAGUUGACCGAACUUGAUUA

10 ncRNA

4553 CCCUUUCCUGGCUAGGUUGUCCG

1

0 transposon

LINEbaggins

4554 CCUCGAACUGUGAGGGAUCCUCAACGUGUAACGUCGGGUCAAU

1 no match

4555 AUCUCAUCGUCGUAGAACAAGCCCCGAGCUGUAACGUCGGGUACAAU

1 no match

4556 UGAUACCGAUAAUGACAAUGGUUGA

1

1 transposon

LTR

gypsy34557 AACUCUAAGCGGUGGAUCACUCGGC

10 ncRNArRNA

4558 UGUUUCAUCGUUAGACGGCUCCAG

1

2 AT-chX

AT-chX-B

4559 ACCUCAUCGUCGUAGAACAAAGCCCCGA

1 no match

4560 GCGGAACCGGGCGGAACUGGAACAUCUCGUGUAACGUCGGGUCAAU

1 no match

4561 UUCCUGUUGAUGUGAGGGCCCCAA

1

0 transposon4562 UGCACCGAAAGUAUAUGAGAGGAGACU

1

0 Su(Ste)

Su(Ste)4563 GAACUGUCGAACACCGGCUUCAGG

1

0 Su(Ste)

Su(Ste)0 transposon

1360
Su(Ste)LINE

Doc3
Su(Ste)LINEbaggins

0 transposon

LTR

Idefix

0 transposon

LINE

G2

1 transposon

LINEbaggins

2 AT-chX

1 transposon

AT-chX-B
Low̲complexity

F-element
Su(Ste)LINE

G2
Su(Ste)LTRninja-Dsim-like
Su(Ste)
CG13506-RA¦CG13506

LINE

Low̲complexity

baggins

F-element

rRNA

LINE

G2

4564 UCUCAUCGUCGUAGACCAAGCCCA

14565 AGUGAGGGGGAUCCUCAA

1 no match

2 Su(Ste)

Su(Ste)4566 UCUCAUUCGUAGAACAAGCCCG

1 no match

4567 GUUCUCAUCGUCGUAGAACAAGGCCCGA

1 no match

4568 CUACAAUCUCCAAGCACGACCCCCGAUU

1 no match

4569 AAAGGUGGAAAUGAAGAAAGUACACUGUAACUCGGGGUCAAU

1 no match

4570 AUCGUCUCCGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCG

1 no match

4571 UCUUGAUCCGAUGAUAUCACUUGGCC

1

0 no annotation

4572 AUGUUUCAUCGUUAGACGGCCCGGGC

1

2 AT-chX

AT-chX-B

4573 UCCUCAACUGUGAGGGAAUCCUAAA

1 no match

4574 UGUUUCAUCGUUAGACUUCUCGGGC

1

2 AT-chX

AT-chX-B

4575 AAUCCUCAACUUGAGGGAUCCUCAA

1 no match

4576 UUCGGCUUUUCUGACGAGAACUCGAGC

1 no match

4577 AAAACAACUGUGAGGGGAUCCUCAA

1 no match

4578 UCUCAUAGUCGUAGAACAAGCCGA

1 no match

4579 UGUUUCAUCCGUUAGACGGCUCCGGGCCUGUAACUCCGGGGUCAAU

1 no match

4580 UUAAAUGCCGGAAGCGAUCCCACUG

1

2 AT-chX

AT-chX-B

4581 AGGGGGCAACUCCAUCUCAGAGCGGA

1 no match

4582 AACUGGUGAGGGGAUCCUCAA

1 no match

4583 GAACCUCAACUGUGAGGGAUCCUCAA

1 no match

4584 UAGAUCUCCCCGUUGACUAGCCCCA

1 no match

4585 GCAUAUCAUUCACGCCACGCUCCGACC

1

0 Su(Ste)

Su(Ste)4586 UACUAGCACUACCUAAAAUGACCCCUAC

1

0 coding gene4587 GCUGACUCUACGUGACGGAACCGGA

1

0 transposon

4588 AUCGUCUCGGGGAUGAAACAAGAUAUGACCAAAGCAAAGACUA

1 no match

4589 ACUCAACUUGAGGGGAUCCUCAA

1 no match

4590 GAUUGCCGGAGCUCUGUACUACGAUA

14591 GCACACAGAGGAGAGCAAGAGAGCA

1 no match

4592 CUCAACUGUCAGGGAUCCUCAA

1 no match

4593 UUUCUGACGAGAACUCGAGCCACGUA

14594 UGCAAUUUCCCGUGGGACUACA

1 no match

4595 UAGGAUCUUCACCGUUGACUAGCCCCGA

1 no match

4596 UACACACUCAUCAACCAAAGGACGUA

14597 UCGUCUAUCGUCGUAGAACAAGCCCGA

1 no match

4598 ACCUCAUCGUCGUAGAACAAAGCCCGAC

1 no match

4599 UGUUUCAUCGUUAGACGGCUCGGU

1

1 AT-chX

AT-chX-B

4600 CCCAUCGUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)4601 CUGUGGGAAUUGGAUCCUUAUUAUCCCUCC

1 no match

4602 AUCUCAUCGUCGUAGAACAAAGCCCG

1 no match

4603 AAUGUAGAUAAGGGAAGGGGCAAAU

1 no match

4604 UACUAGCUGGCUGAUGAUCCGAUAU

1 no match

4605 UUACGAGUAAUGGUCUUCGGGGCGU

1

1 coding gene

CG12717-RA¦CG12717

4606 UUCGGCUUUCUGACGAGAACUCGACGC

1

2 no annotation

4607 UUCUUGACAACCCGAUCGGACCUCAC

1

0 transposon

4608 AUCGUCGUCGGGAUAGAAAUCAUCGUCGUAGAACAAGCCCGA

1 no match

4609 UGUUUCAUCGUUAGACGGCUCGGGUG

1

1 AT-chX

4610 UUCCAUCGUCGUAGAACAAGCCCUA

1

2 no annotation

4611 CUCGCAAGAAAACUAAUCCGAGUAU

1

0 transposon

4612 UCUCAUCGUCGUAGAACACGCC

1

1 Su(Ste)4613 UCGACAUUUUGCCAGUUCACUCGU

1

0 no annotation

4614 CAAGAUAUGACCUAAGCAAAAGACAC

1

2 transposon4615 CGAAAUAGAUCUUCACCGUUGACCUUGGCCC

1 no match

4616 CUUUCUCAUCGUCGUAGAACAACGCCCGA

1 no match

4617 GGUGGAAAUGAAGAAAGUACA

14618 UUCGAGAGCAUAUAAUCCCCGUAGGU

1 no match

4619 UGAAACCCACUUUUCAGAUCGAGCAC

14620 CAAGAUAUGACCUAAGCAAAGACA

14621 UAAACUGUGAGGGGAGUCCUCAA

1 no match

4622 UUAAACAUCCUAUGAGGCUACGG
4623 GACUAGCUGGCUGAUGAUCCGAUACG31550-RA¦CG31550
LINE

0 coding gene

Rt1b

CG33129-RA¦CG33129

1 no annotation

0 no annotation

LTR

invader4AT-chX-B

LINE

Doc
Su(Ste)LINEF

0 transposon

LTR

HMS-Beagle

1 transposon

LINE

Cr1a

1

0 transposon

LINE

Cr1a

1

2 Su(Ste)4624 UGUACGGACCUGGAGAACAACCAGAG

1

1 transposon4625 UGUUUUCAUCGUUAGACGGCUCGGGCC

1 no match

4626 UAGCUGGCCGAGGAUCCGAUUUU

1

0 Su(Ste)

Su(Ste)4627 GCAACAAGAGCGUGUCCCGGGCAGACCU

1

0 coding gene

CG10229-RA¦katanin-60

2 no annotation

Su(Ste)LTRninja-Dsim-like4628 UCUCAUCGUCGUAGAACAAGCCCCGACUGUAACCUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA
1 no match
4629 AUCGUCCUCGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

4630 UUAUACCCGGGUGAUUACCACUAUU

1

1 Su(Ste)

Su(Ste)4631 UGUUUCAUCGUUAGACGGCUCGCC

1

2 AT-chX

AT-chX-B

4632 AUCUCAUCGUCGUAGUCAAGCCCGA

1 no match

4633 UUCUUCAUCGUUAGACGGCUCGGGCCUGUAACGUCGGGUCAAU

1 no match

4634 UCCGAGGAACCAAUUGAUACAGCUG

1

1 Su(Ste)

Su(Ste)4635 UCGUCGGGAUGAAAAUCCUCAA

1 no match

4636 AUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCA

1 no match

4637 UGUUUCAUCGUUGACUAGCCCCA

1 no match

4638 AUCUCAUCAUCGUAGAAACAAGCCCCG

1 no match

4639 AAAUCUCAUCGUCGUAGAACAAGCCCCGA

1 no match

4640 CACUGCAUUCGCGUCGAGGCCCAG

1

0 transposon

LINER1-element4641 GUAUGACCCCUGGUACUGAAAUUCAG

1

1 transposon

DNA

Bari1

4642 UGACCGUUGACCAUUAUCGUCUCA

1

0 transposon

LTR

opus

4643 AUCGACCGGCACGAUUCUAUCGAGU

1

2 transposon

LTR

G4

4644 UUCUCAUCUUCGUAGAACAAGCCCGA

1

1 Su(Ste)

Su(Ste)4645 UUCUCAUCGUCGUAGAACAAGCCCCA

1

1 Su(Ste)

Su(Ste)4646 UGUUUCAUCGUUAGACGGCUCGGGCCUGC

1 no match

4647 UGUUUCAUCGUAUACGGCUCGGG

1 no match

4648 GUUCAAGCCCGGGUAUUCUGAUUUA

1 no match

4649 UCGUCAGUCGUACGUAGAACAAGCCCGGACUG

1 no match

4650 UCUCAUCGUCGGAGAACAAGCCCGA

14651 UCUACAUCGUCGUAGAAGAAGCCCGACUGUAACGUCGGGUCAAU

1 no match

4652 UUCUAAGGUUACCCCAGGAUGCUGU

1 no match

4653 UAUAAUCGCCCCGAAGGUUUGCCCCUCUG

1 no match

4654 CAGGCUACACAGAGGAGAGCGAGAUGAGAGCA

1 no match

4655 UUCAAGGUUACCCAGGAUGCUGU

1 no match

4656 UACUCGAUCGUCGUAGAACAAGCCCGCGUGUAACGUCGGGUCAAU

1 no match

4657 GUAGAUCUUCACCGUUGACUAGCCCCC

14658 UUCGUGACGAGAAACGUCGAGCCGCGAAAAACUG

1 no match

4659 CGAAAUGUUUCAUCGUUAGACGGCCUCGGC

1 no match

4660 UCCACCGGGUUUUUGGCACUUUGCCGC

1 no match

4661 UAGAUCUUCCCCGUUGACUAGCCCCA

14662 AUCGUCUCGGAUAAAUGUUUCAUCGUUAGACGGCUCGGG

1 no match

4663 CCGAAGAAGAUGAACCCCCUUAAAGU
4664 GUGUUUCAUCGUUAGACGGCUCGGGCU4665 UCGUCAUCGUCGUAGAACAACGCCCGGA

1 no match

4666 CAACUGUGAGGGGAUCCUCUAA

1 no match

4667 UUGACCACACGAACGAAUCCGAGAAA

14668 CUCUCAUCGUCGUAGAACGACGCCCGA

1 no match

4669 ACAAACUGUGAGGGGAUCCUCAA

1 no match

4670 GAUUCUGCCGGAACGAGGGACCCAUG
4671 UUCUCAUCGUCGUAGAACAAGCCG
4672 AUCGUCAUCGUCGGUAGAACAAGCCCGGA

1 no match

4673 CCGAUCUCCUGAGUCGGACUUCGAGC

1

0 transposon

LINER1-element4674 AAGAUAUGACCAAAGCAAAGACACC

1

1 transposon

LINE

Cr1a

4675 UGAAAUCCGAGUUAAUAUGGCACCAA

1

0 no annotation

4676 UUUUUAAAACAAUUGAAAGAUAAGACCC

1

2 transposon

LTR

copia

4677 AUUUCUAGUCGAAUAAAUGAUCCGUC

1

1 transposon

LTR

4678 AGAUCUUCACCGUUGACUAGCCCCCA

1

1 Su(Ste)4679 UCCACGGACCUGGAGAACAACCAGA

1

1 transposon

4680 UAGGUUAUGGGCCCAGUAAACAUUUAG

10 ncRNA

alphagamma-element4681 GUUUAUCCAAGACAGGUUGUGC

1 no match

4682 GAGGACUUGAGCGAUUUAAGUGGC

11 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)1 Su(Ste)

Su(Ste)1

0 coding gene

CG1338-RA¦hydra

12 AT-chX

AT-chX-B

1 coding gene

CG12717-RA¦CG12717

1

0 coding gene

CG7131-RA¦CG7131

1

1 Su(Ste)

Su(Ste)17.6
Su(Ste)LTRninja-Dsim-like4683 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGGC
1 no match
4684 UAGACCUUCACCGUUGACUAGCCCCA

1

1 Su(Ste)4685 UUUGAAUGCCCUAAUUACUUCUCCU

1

0 no annotation

Su(Ste)4686 UCUCAUCGUCGUAGAACAAGACCGA

1

1 Su(Ste)4687 UAGUCUAGAGACCGAAGAUAGUUGA

1 no match

4688 CCCCUCUGGUGAUAAAUUGAUUG

14689 AAAAUUUCUCAUCGUCGUAGAACAAGCCCGA

1 no match

4690 AGUAUGACCCCUGGUACUGAAAUG
4691 GCCGUCGAGCAUCGCUACCUGGAUU
4692 AUCUCAUCGUCGUAAGAACUACGCCCGA

1 no match

4693 UAGAUCUUCACCGUUGACUUGCCCGA

14694 CACACAGAGGAGAGAGAUGAGAGCA

1 no match

4695 CUUAACUUCGGGAUAAGGAUUGGCUCU

1

1 ncRNA

4696 GAAGCGACAUGCUCGAGAUGACAACC

1

0 transposon

LTR

micropia4697 UAAAAUGCCAGAAUUUUAUUGGGGG

12 transposon

LINEbaggins

4698 CUCAACUCGUGAGGGGAUCCUCAA

1 no match

4699 UUAAGUCCCGUUACUUGUGCCCAG

1

0 transposon

LINE

G6

4700 UAAAAGAAAUCCUGACAAGAUCCCGGG

1 no match

4701 AAAUAACAAGAUGCAUACGAUGUGGCUCCA

1

1 transposon

DNA4702 UCUCAGUCGUCGUAGAACAAGCCCGACG

1 no match

4703 UGUCCACCAAAGGCAUGCCCGAUG

1

0 transposon

LTR

opus

4704 UGAUACCGGGAAUGACAAUGGUUGA

1

1 transposon

LTR

gypsy34705 UCUCAUCGUCGUAGAACAAGCCAA

1

2 Su(Ste)

4706 UCGUUUCCGGCGAGCGUUGAUUAA

1 no match

4707 UCUCAUCGUCGUAGAACAAGCCCAACUG

1 no match

4708 AAAGAGAGUAAUUUUGGCCGUCACC

1

0 transposon

LINE

Cr1a

4709 UAAAUGCCAGAAUUUUUAUUGGGG

12 transposon

LINEbaggins

4710 GUAUGACCCCUGGUACUGAAAUGCAU

1

1 transposon

DNA

Bari1

4711 UAGUUUCAUCGUUAGACGGCUCGGGU

1

2 no annotation

4712 GGCCCGAAAACACGAGAGCAGAGC

1

1 transposon

LTR

opus

4713 GUUCACCGGGUUUUGGCACUUUG

1

0 transposon

LINER1-element4714 UAGAUGUGGCCUGAAGUUGAAUUU

1

0 transposon

LINE

F

4715 CCUCAUCGUCGUAGAACAAGCCCGAGG

1

1 Su(Ste)4716 UUCUCAUCGUCGUAGAACUAGCCCUAA

1

2 Su(Ste)4717 UAAAUGCCAGAAUUUUAUUGGUGUUC

1

1 transposon

4718 UCCAAAGGACUCGAAAAAACUCUUGA

1 no match

4719 UCUCAUCGUCGUAGAACUAGCCCC

1

1 Su(Ste)

4720 UAUGCGACGAGUACGCUGUUUGGGC

10 transposon

4721 GGAUCCUCAACUGUGACCUCAA

1 no match

4722 GACUAGCUGGCCGAGGAUCCGAUA

10 Su(Ste)

Su(Ste)4723 UAGAUCUUCACCGUUGGCUAGCCCCA

1

1 Su(Ste)

Su(Ste)4724 AUAAAAGAAUCCUGACAAGAUCCCGGG

1 no match

4725 UCGUCAUCGUCGUAGAACAAGCCCGGAG

1 no match

4726 UCAAGUCCUUCUGGUGCAACCGAAA

11 Su(Ste)

Su(Ste)4727 AAAACCUGAAGAUGGAUCCUGUAGUCGC

1 no match

4728 GGAUCCUCAACUGUGAGGGCAUCCUCAA

1 no match

4729 CCUGCUGACGGGGUCCGAAAACAC

1

Su(Ste)0 transposon

DNA

Tc1-2

1

1 transposon

DNA

Bari1

1

1 coding gene

CG6210-RA¦wls

1 Su(Ste)

Su(Ste)1 transposon

rRNA

1360

Su(Ste)Su(Ste)Su(Ste)LINEbaggins
Su(Ste)

LTR

LTR

G4

opus

4730 CUAGAUCUUCCACCGUUGACUAGCCC

1 no match

4731 AUCUCAUCUCGUAGAACAAGCCCG

1 no match

4732 GUAAUGACCCCUGGUACUGAAAUGCAG

1 no match

4733 AUCGCUCGGGAUGAAAUUCGCCUUUCUGACGAGAACUCGAG

1 no match

4734 GAGAUGGCUGCCGGGUACUACCUCA

1

0 transposon

LINE

G2

4735 UCUGAGAUUGUGAAUGAUAAAGAUUGG

1

0 transposon

LTR

invader34736 AUCGUCUCCGGGAUCGAAAUGUUUCAUCUUUAGACGGCUCGGG

1 no match

4737 UUCAACGAGUCGUCACUGGGAGC

1

0 transposonLINEaccord24738 UCUCAUCGUCGUAGAACAACGC

12 Su(Ste)4739 UAAAUGACCCGUCAAUAACGAAGACA

1

1 transposon

4740 UCUCAUUGUCGUAGAACAAGCCCUA

1

2 Su(Ste)4741 CGUUUCAUGUUAGACGGCUCGGGC

1 no match

4742 GGACCCAACUGUGAGGGGAUCCUCAA

1 no match

4743 AUCUGACGAGAACUCGAGCCACGUAGC

1

2 no annotation

4744 UAUCAUCGUCGUAGAACAAGCCCG

10 Su(Ste)4745 UCGACCGACCAGCUGUGCGAACAGU

1

0 transposon

Su(Ste)LTR

RR50207
Su(Ste)Su(Ste)LTR

invader3

LTR

gypsy84746 AUUGACCGAGUACAGACGGGCGUUGUUCGUACGAACGGAUGAGAGUUUCAGUCCCGAGACGAU
1 no match
4747 UACUCAUCGUCGUAGGAACAAGCCCGA

1 no match

4748 UAGACCUAGAGCAUCCAAAAAACUUUGUA

10 transposon

4749 UCUCGUCGUCGUAGAAGAAGCCCGA

1

2 Su(Ste)

Su(Ste)4750 CAAUACUCGUCUCGGGACUGAAAAAAAAAAAAAACGGAUCCCUCUAA

1 no match

4751 UAUUAUUAUACCCAGGUGAUUACC

1

0 Su(Ste)

Su(Ste)4752 AUGUUUCAUCGUUAGACGGCUCGG

1

1 AT-chX

4753 UUCUCGACGUUGACCAGCCUCCUGUA

10 transposon4754 UAUGACCGAAAUUCGGAAAACGGA

1

2 repeat4755 UCCAAAAGAAAUGAUGACCCUUGCAUU

1 no match

4756 UUUAUACCUGAGCCAGUUUGUUUG

1

1 transposonLow̲complexity

4757 CAAGAUAUGACCAAAGCAAAACU

1

2 transposon

DNA4758 AUCAACUGUGAGGGAUCCUCAA

1 no match

4759 AUCUCAUCGUCGUAGGACAGGCCCGA

1 no match

4760 UGUUUCAUCGUUAGACGGCUCCGGGA

1 no match

4761 AAUUUCGAGUCGAAUAAAUGAUCCGUC

1

1 transposon

LTR

4762 UAAACUCUGGACAGGACGUUGAUGA

1

0 transposon

Simple̲repeat4763 GAUUCCGGAGAGGGAGCCUGAGAAA

10 ncRNA

4764 UCUCAUCAUCGUGAACAAGCCCGA

1 no match

4765 GGAUCCUCAACUGUGAGGUCAA

1 no match

4766 UCGGCCCGAACCCUCUGGUGUG

1 no match

4767 UCCUUCUGAAGAGUUGUUGGCACG

14768 UAAAUGCCAGAAUUUUUAUUGGGGUUUC

1 no match

4769 UUCGACCGAACACUUUGAACCAAGUA

1

1 Su(Ste)

4770 UCUGUUUCAUCGUUAUACGGCUCGGGC

1

1 AT-chX

4771 AACAAGAUGCAUACGAUGUGGCUCCGA

1

2 transposon

4772 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUGGGUCAAU

1 no match

4773 UCCCAGGCCCAUCUGGUUGAACGUGU

1

2 Su(Ste)4774 UCAAAGCGUUGACUACUUCACGAGGAA

1

2 transposon

4775 UAAAUGUUUCAUCGUUAGACGGCUCGGGC

1 no match

4776 AUCGUCUCGGGACUGAAACGUUGACCAAUUUCCGAACACUACGC

1 no match

4777 UUACAGUGAAAUGAAGAAAAGUACA

1 no match

4778 UGGUACUUUUUCCGAUGAGCCAGU

1 no match

4779 AUCUUCAUCGUCGUAGAACAAGGCCCGACUGUAACGUCGGGUCAAU

1 no match

4780 UAUCAUCGUCGUAGAACUAGCCCGA

1

1 Su(Ste)4781 UCCCAGAUCCCAUUUUAGCAUUAGC

1

0 transposon

LINE

G2

4782 AAAGAACCCGAUUCCUCUUCCAUGA

1

0 transposon

LINE

Doc4

4783 UUUCUCAUCGUCGUAGAACAAAGCCCCG

1 no match

4784 GGCGCCCGAUAAAGCAGCAGAUGGAU

1

0 transposon

LINE

TART-A

4785 UCUCAUCGUCGUAAGAACAAGCCCCGAGG

1 no match

4786 AUCUCAUCGUCGUAGAACUAGCCCCG

1 no match

4787 UCUCAUCAUCGUAGAACUAAGCCCGA

1 no match

4788 UUGAUUCCGAGGAACCAAUUGAUCCA

1

0 Su(Ste)

Su(Ste)4789 AUCUCAUCGUCUUAGAACAAGCCCGAA

1

2 Su(Ste)

Su(Ste)4790 GCCCCGUACUCUUGGUGACCAA

1 no match

4791 GAAUAUCGUCUCGGGAGUGAAAUCUCAUCGUCGUAUAACAAGCCCGA

1 no match

4792 CCUCAACUGUGAGGGGACUCCUCAA

1 no match

4793 CCCAGUAAAACCCAACCAGAUCAAA

1

1 transposon

4794 AACGAGUGACGAAUUGCACCCAGU

1

0 no annotation

4795 UCUCAUCGUCGUAGAACUAUCCCGA

1

1 Su(Ste)4796 CCUCAUCUCGUAGAACAAGCCCGA

1 no match

4797 UCCGAGGAACCCAUCGAUCCAGCU

1

1 no annotation

4798 UUGAUACGAAUGAGACCCGCAGUAAAG

1

0 repeattrf

4799 UCUCAUCGUCAUAGAACAAGCCCC

12 Su(Ste)

Su(Ste)4800 UCUCAUCGUCGUAGAGCAAGCCCAA

1

2 Su(Ste)

Su(Ste)4801 GGUCCCGUAGUGUAGUGGUUAACAUGCCUGC

1 no match

4802 UCUCAUCGUCGUAGAACAGCCCAA

1 no match

4803 ACCGAGCUCAAGUCCAUAGGAUAUGC

1

0 coding gene

CG17170-RB¦su(f)4804 AGAAAAUCCUCAACUGUGAGGGGAUCCUCAA

1 no match

4805 AUCAUCAACUGUGAGGGAUCCUCAA

1 no match

4806 UCGGAUUUCCGACGCCUCAAGAUCCCGC

1 no match

4807 CAAGAUAUGACCACAGCAAAGACAC

14808 UCCUCAACUGUGGGGGAUCCUCAA

1 no match

4809 CGAAAUCUCAUCGUCGUAGAACGAAGCCCGA

1 no match

4810 UGCUCUCGAAUGUAUGCCCGGAUAUAC

1 no match

4811 UCUCAUGUCGUAGAACCAAGCCCCGACUGUUAACUCCGGGGUUCAACUAU1 no match
4812 ACAAUGGGCGCAAGCCUGAUCCAGCCAUG

1 no match

0 transposon

1 transposon

AT-chX-B
LTR

ninja-Dsim-like
SAR̲DM
F-element
1360

17.6
I
rRNA

LTR

GATE
Su(Ste)AT-chX-B

DNA

1360
Su(Ste)LTR

opus

Su(Ste)LTR

copia
Su(Ste)

LINE

Cr1a

4813 UCUCAUCGUCGUAGAACAACGCCCGAU

1 no match

4814 AAAACCUGAAGAUGAUCCUGAGUCGU

1

0 transposon4815 UAGAUCUUCACCGUUGACUUCGCCCA

1

1 Su(Ste)4816 UCUGUCUUCAUCACUACGGGCCCAG

1

0 transposon4817 GUGCCAGGCCCGUAUAACGUUAAUGAUU

10 ncRNArRNA

4818 CGUUUCAUCGUUAGACGGCUCAGU

1 no match

4819 CGAAUGUUUCAUCGUUAGACGCCUCGGGC

1 no match

4820 GGAUCAUCAACUGUGAGGGCAUCCUCAA

1 no match

4821 GUAGAUCUUCCCGUUGACUUGGCCC

1 no match

4822 UCUCAGUCGUCGUAGAACAAGCCCGA

1 no match

4823 ACCUCAACGUGAGGGAUCCUCAA

1 no match

4824 UCUCAUCAUCGUAGAACAAGCCCGU

1

1 Su(Ste)

Su(Ste)4825 UCGUCUCGGGUAAGGAUCCUCAA

1 no match

4826 CUGGUAUAGCACACUUUUGUAUCGGC

1

1 coding gene

CG41580-RA¦CG41580

4827 UUCUCAUCGUCGUAGAACAAGCCCGAGG

1

0 Su(Ste)4828 UUCCGAUGUUUUGAAACUGCGUGACCCA

1

0 transposon

LTR

flea

4829 CAACAGAGGAGAGCAGAUGAGAGCA

1 no match

4830 UCCGAUCUCCUGAGUCGGACUCCGA

1

0 transposon

LINE

R1

4831 UGGACUUUUUCCGUAUGAGCCAGU

1

2 transposon

LINE

G2

4832 AUCUCAUCGUCUUAGAACAAGCCCGA

1

2 Su(Ste)4833 CAGGCACCGAGAAGGGAGAGCAGGAUGAGAGCA

1 no match

4834 CCCGAAGCGGACCAGCCCAAUUAUU

1 no match

4835 UGCAAUCUCCGAGCAAGACCCCGA

14836 AUCCUCAACUGUGAGGGGAUCAUCAA

1 no match

4837 AUUAUCCGUAAGGGUUGACAUAUUGCA
4838 GAUGAGCCAGUGAAGUUGCUUAAGG
4839 AUCCUCCUGUGAGGGAUCCUCAA

1 no match

4840 AUCGUCUCGGGGAUGAAAACGUUUCAUCGUUAGACGGCUCGGGC

1 no match

4841 AUGAUCCUCAACUGUGAGGGGAUCCUCAA

1 no match

4842 GAAAAGAGAGCAAUUUUGGCCGU

14843 AGCUACACACGAGGAGAGCACGAUGGAGAGACA

1 no match

4844 AUGUUUUCAUCGUUAGACGGCUCGGA

1 no match

4845 UUCUCAUCGUCGUAGAACAAGCCCGGA

1

1 Su(Ste)4846 GACUCACCAGAUGAUAUCAAUGUCCCAA

1

0 transposon

LTR

invader64847 UAACAACGUCAACCUGAGGCAUUGGA

1

0 transposon

LTR

diver24848 GCCCGGCUAACUCAGUCGGUAGAGCA

1

1 ncRNA

4849 UACGGAACGAGAGACGCGACUGGAU

10 coding gene

4850 UCGUCGUCUACCCAUGGAAUCCCGA

1

0 transposon

LINE

G2

4851 GCCCGUACUCUGUGGUGACCGACA

1

2 transposon

LINEbaggins

4852 UCUCAUCGUCGUAGAAGAACGCCCGUA

1 no match

4853 AUCGUCAGUCGUACGGUAGAAACAAGCCCGGACUG

1 no match

4854 UCCGAUGAACCAAUUGAUCCAGCU

14855 GUCUCAGGAUGAAAAUCCUCAA

1 no match

4856 GCCAAAUGAACCUUGGUUGUCUUGAGA

1

0 ncRNA

4857 UGACCUCGUGUGGCCAUACUCUUGG

1

0 transposonLow̲complexity

F-element

4858 UCCAUGCAGCAGAAGCGACAGAGUU

1

0 transposon

LINEbaggins

4859 UCCGAGGAACCAAUUGAUCUAGCU

1

1 Su(Ste)

4860 AACUUGAGGGGAUCCUCAA

1 no match

4861 AUACAAUCUCCGAGCAAGACCCCGA

14862 GUCUCGGGAUAAAAAUCCUCAA

1 no match

4863 UCCUCAACUGAGGGGAUCCUCAA

1 no match

4864 ACAAGAUAUGACCUAAGACAAAGACCA

1 no match

4865 UAUCAUGUGAAAUUUGUGAACCCUGU
4866 UUCUCGACGUUGACCAGUCUCCUGU

LINEHelenaSu(Ste)Low̲complexity

F-element

Su(Ste)Su(Ste)1 transposon

LINE

Circe

1

0 transposon

LTR

DM88

1

0 transposon

LINE

G2

0 transposon

DNA

1360

Su(Ste)tRNA
CG15288-RB¦wb

0 Su(Ste)

Su(Ste)pseudogene

Su(Ste)1 transposon

LINE

Circe

1

0 transposon

LINE

Cr1a

1

1 transposon

LTR

ninja-Dsim-like4867 AAAACCUGAAGAUGAUCCUGAGUCAC

1

1 transposon

LINE

Helena4868 UGAACCCGGCAAUGCCCCGUAAGAAGG

1

1 transposon

LINE

INE-1

4869 AUCGUCUCGGGGGCG

11 coding gene

CG14194-RA¦CG14194

4870 AGAUAAGGGAAGUCGGCAAAAUAGAU

1

2 ncRNArRNA

4871 ACACAUGAUCACUUCAGACGUACCCGU

1 no match

4872 AUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGAACAAGCCCG

1 no match

4873 UAGCUUGCACCAUCACCAUCACCA

1

2 coding gene4874 UCGUCGGCCUGGAUCACGGACAUU

1

0 transposon

LTR

ninja-Dsim-like4875 UGGAUGCCGUGAGACAGUUCCGAUGU

1

0 transposon

LTR

ninja-Dsim-like4876 UAGAUCUUCUUCGUUGACUAGCCC

1

2 Su(Ste)4877 ACAAGAUAUGACCAAAAGCAAAAGACAA

1 no match

4878 UGUUUUCACCGUUAGACGGCUCGGGC

1 no match

4879 UCGGCAUCGUCGUAGAACAAGCCCG

12 Su(Ste)

4880 UACAAUCUCCGAGCACGUCCCCGAUAU

1

1 transposon

4881 AUGGUUCAUCGUUAGACGGCUCGGGC

1

2 AT-chX

4882 GUCUCGAGAUGAAAAUCCUCAA

1 no match

4883 CAGCACACAGAGGAGAGCAGAUGGAGCACUGUAACUCGGGGUCAAU

1 no match

4884 AACCGGAGAAGACGUUGAAUGGAUCGGC

14885 UAGAUCUUUCACCGUUUGACUAGCCCCCA

1 no match

4886 UCUCAGUCAUCGUAGAACAAGCCCGAU

1 no match

4887 ACAAGAUAUGACCAAAGCAAAGACUA

14888 UCUCAUCGUCGUAGAACAACGCCCGAA

1 no match

4889 UCUUCCGACAGACGAAGAAGUGGC
4890 AUGCUCUCGAAUGUAUGCCCGAUAUACG11505-RA¦CG11505

Su(Ste)Su(Ste)LINE

Circe
AT-chX-B

1 no annotation

2 transposon

DNA

1360

1

0 transposon

LTR

diver2

1

0 transposon

LINER1-element4891 UAUGACCAGCUUGGACCGAACACU

1

0 Su(Ste)4892 AUCUCAUCGUCGUAGAACAAGCCCU

12 Su(Ste)4893 UAACGAUAUCCACAUUCGCUGAUGACAC

1

0 transposon4894 AGAAAAAGGUGGAAAUGAAGAAAGUACA

1 no match

4895 CUCUCAUCGUCGUAGAACAACGUCCGA

1 no match

Su(Ste)Su(Ste)LINE

Doc3

4896 GUUUCAUCGUUAGACGGCUCGGGUC

14897 UCUCUCUCGUAGAACAAGCCCGA

1 no match

2 AT-chX

AT-chX-B

4898 GGUAUAGCACACUUUUGUAUCGGC

1

0 coding gene

4899 UCAGAUACCCGUUACUCAGCUAGUA

1

0 transposon

LINE

INE-1

4900 UUUUACGUGGACGAGUUGCUCGAU

1

0 transposonLow̲complexity

F-element

4901 UUCGUCAUCGUCGUAGAAGAAGCCCGG

1 no match

4902 CUUUGACCAAUUUCCGAACAUACG

1

1 transposon

LTR

DM88

4903 CUCAACUGUGAGAUCCUCAA

1 no match

4904 UUGUACACACCGCCCGUCGCUACU

14905 CCCAACUAUGAGGGGAUCCUCAA

1 no match

4906 UGCAUGAAUUCCUCUGGGCCGAUAGC

14907 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACGUCGGGUCAAU

1 no match

4908 GCACACAGAGGAGAGCACGAUGAGACGA

1 no match

4909 CGAAAUCAACUGUGAGGGGAUCCUCAA

1 no match

4910 UCUCAUCGUCGUAGAAGCAGCCCG

14911 CAGACACAGAGGAGAGCAGAUAGAGCA

1 no match

4912 GCAACUGUGAGGGGAUCCUCAA

1 no match

4913 UAAAGAAUCCUGACAAGAUCCGG

14914 CAGGCACCAGAGGAGAGCAGGAUGAGAGCA

1 no match

4915 CUGGUGAACGAGUGAACUGGCAACAA

1 no match

4916 GGACUCAACUGUGAGGGGAUCCUCAACUGUAACUCGGG

1 no match

4917 GCUGAGAAAAAAACGAAGUAUAACGAA
4918 UAGAUCCUCACCGUUGACUAGCC

CG41580-RA¦CG41580

0 ncRNA
0 transposon

rRNA
LINE

2 Su(Ste)

R1-element

Su(Ste)1 transposon

LTR

invader1

1

0 transposon

LINE

Doc

1

1 Su(Ste)4919 UAAGGAUGAUGAUACCGAUUAAAGG

1

0 no annotation

4920 AUCCUCAACUGUGAGGGAUCCUCUAA

1 no match

4921 AUGUUUCAUCGUUAGACGGCUCGGGCG

1

1 AT-chX

4922 UCCGAGAAUGACUUGAGGUAGUUUU

1

0 transposon4923 UCUGGUUGAACGUGUCCUGAAAGU

1

0 Su(Ste)4924 UCUCAUCGUCGAGAACGAGCCCGA

1 no match

4925 UCUCAUCGUUUAGAACAAGCCCGA

1 no match

4926 GGAUGAAAUGAUACCGAGAAUGACAAUGGUUGA

1 no match

4927 CCUCAACUGUGAGGGGAUCCCAA

1 no match

4928 AGAUAUGACCAAAGCAAAGACAC

1

0 transposon4929 GGAUCCUCAACUGCAA

1

1 coding gene4930 UUCGAGAAGCGUUUGAUCGAGUGUG

1

0 transposon4931 GUCCUAGCCUCCAAGACGCGCC

10 coding gene4932 ACGAAGAUGAUUCUGGCCCAGAAAA

1

0 transposon4933 UCUCAUCGUCGUAGGAGAAGCCCGA

1

2 Su(Ste)4934 AUCGUCAUCGUCGUAGAACAAGCCCCGA

1 no match

4935 UCGAACUGUGAGGGGAUCCUCAA

1 no match

4936 ACUCAUCGUCGUAGAACAAGCCCA

1

2 Su(Ste)4937 UUAACUACAUGGCGACCGUGACAGGACCCUA

1

1 transposon

LTR

mdg1

4938 UAUGCAAUAUUUGUUGCGCCCUGGG

1

1 transposon

LTR

opus

4939 UUAUAUUGGCUUAGUGCGCUCACAG

1

0 transposon

LTR

Dm88

4940 UCUCAUCGUCGUAGAACUAGUCCCGA

1 no match

4941 AGUAGAUCUUCACCGUUGACUUGGCC

14942 AUCGCUCGGGAUGAACAGCACACAGAGGAGAGCAGAUGAGAGCA

1 no match

4943 GCACGACAGAAGGAGAGCAGAUGAGAGCA

1 no match

4944 UGUCCUACUGAUGACGAUGACCCUU

1

0 coding gene4945 GCCCCGUACUCUGUGGUGACCAACUA

1

2 transposon4946 UCUCAUCGUCGUAGAACAAUCCCCGA

1

2 Su(Ste)4947 UAAAGUAAGCCCGAAGAUUGUCCAAU

1

2 transposon

LTR

4948 ACACAUCUUCACCGUUGACUUGGCCA

1 no match

4949 CGUUGACCAAUUUUCCGAACAUACGC

1 no match

4950 UAACAAGAUGCAUACGAUGUGGCUCCC

1

1 transposon

DNA4951 AGACUAGCUGGCCGAGUAUUUGAU

1

1 Su(Ste)4952 UAUUGUAAGCCGAAGUAGUCAGU

1

0 transposon4953 UCCUCAACUGUGAGAUCCUCAA

1 no match

4954 UCUCAUCAUCGUAGAACAAGCCCGUA

14955 UCUCAUCGUCGAGAACAGCCCGA

1 no match

4956 UCCGGGGUCGAAAUGACCUUGACCU

1 no match

4957 UGAUGACCGAAAUUUGGAAAACCAGAU

1

0 repeat4958 UUGUUUCAGAGCGUUGGCCAGUU

1

0 transposon4959 GAACUUGAGACCCCAACCGCUCC

1

1 no annotation

4960 GGAUAACUGUGAGGCCUCAA

1

2 no annotation

4961 ACUCUCAUCGUCGUAGAACAAGCCCGA

1

2 Su(Ste)4962 AUCGGUCUCGGGAAUGAAAUAAAUGCCAGAAUUUUAUCGGGGUUC

1 no match

4963 UAGGAGACGUGGACACGGAAGAGCUG

1

1 transposon

LINER1-element4964 UGAUUCCGAUCUUGGACAUUCCCG

1

0 transposon

LTR

roo

4965 GUAUGACCCUUACUGAAAUGCAG

1 no match

4966 GGAGUCCUCAACUGUGAGGGGAUCCUCAA

1 no match

4967 CUCAUCUUCUUCUCGACGUUCGACCAG

1 no match

4968 UGACCCAAUUGCGCGCACAUAAGCUGC

1

0 transposon

LTR

flea

4969 UAGAUCUUCGCCGUUGACUUGGCCC

11 Su(Ste)

4970 CAUUCGAUCUCCGACUAGGCCCGCG

1

0 transposon

4971 GAGUCUCACUAGUGAGGAGAGUCCUCGAA

1 no match

4972 AUCGUCUGGGAUGAAAUCGUAAACCAAAGGCCGUGAGUUCA

1 no match

4973 UCUCAUCGUCGUAGAACAAGCCCGAGU

1

1 Su(Ste)4974 UACCCCAGAUUGUUGACUCUUUGCC

1

2 no annotation

4975 CUGUGAGGAGAUCCUCAA

1

1 coding gene4976 GCCGACGAGAUGCCCAGGGCGUCCA

1

1 transposon

4977 ACUUCGGGAUAAGGAUUGGCUCC

1

1 ncRNArRNA

4978 UAGAUCUUCCCCGUUGACUUGCCC

11 Su(Ste)

Su(Ste)Su(Ste)AT-chX-B
LINE

G2
Su(Ste)LINE

Cr1aCG4356-RA¦mAcR-60C

LINE

BS3
CG5174-RA¦CG5174

LTR

invader4
Su(Ste)Su(Ste)0 Su(Ste)

Su(Ste)CG14269-RA¦CG14269
LINE

baggins
Su(Ste)opus

1360
Su(Ste)LTR

2 Su(Ste)diver2
Su(Ste)SAR̲DM
Low̲complexity

F-element

Su(Ste)Su(Ste)LTRGATE

Su(Ste)CG13800-RA¦CG13800
LTR

ninja-Dsim-like4979 UGUUUCAUCGUUAGACGGCUCGGGGCG

14980 AUCGUCUCGGGGAUGAAAAUCUCAUCGUCGUAGAACAAGCCCG

1 no match

2 AT-chX

AT-chX-B

4981 AUCCUCAACGUGAGGGAUCCUCAA

1 no match

4982 UGUUUCAUCGUUAGACGGCUCGCGC

14983 CUCAACUGUGAGGGGGAUCUUCAA

1 no match

1 AT-chX

AT-chX-B

4984 AUCGUCUCGGGGAUGAAAUCCUCGGGAUCAAGGACAACGAGUU

1 no match

4985 UGUUUCAUCGUUAGACGGCUCGGGAAA

1 no match

4986 UCUCAUCGUCGUAGAACAAGCCCAU
4987 UCGGCUUUCUGACGAGAACUCGACG

1

2 Su(Ste)

Su(Ste)1

2 no annotation

4988 UAGAUCUUCACGUUGACUUGGCCC

1 no match

4989 UGCUCUCGAAUGUAUCCCCGAUA

14990 AGGUGAGGGUGCGAAUCCUCAA

1 no match

4991 UACAAUACCCAGUUACUCGUGCCAA

14992 AGAAAAAAAGGUGGAAAUGAAGAAAGUACA

1 no match

1 transposon

LINER1-element

1 no annotation

4993 UCUCAUCGUCGUAGAACAAGCCCGACUGUAACUCGGGGUCAAUAUCGUCUCGGGGAUGAAAUCUCAUCGUCGUAGAACAAGCCCG
1 no match
4994 AUCGUCAGUCGUACGGUAGAACAAGCCCGGACUG

1 no match

4995 AUAGAAGAACAUUGAAGCGCUUGAC

1

1 Su(Ste)4996 UCGGCUCGGAGAAACGCUGUAUGCGC

10 transposon

LTR

flea

4997 UAGAUUCGGCUAGUUACUCUUCUA

1

0 transposon

LINE

Circe

4998 UUAAAUACCUCGAGUACGUCUGCUC

1

1 transposon

LTR

Rt1c

4999 AAAACCUAGAAGAUGAUCCUGAGU

1 no match

5000 GCAACUCUACGGCCCGGACUGCUC

1

0 transposon

LTR

ninja-Dsim-like

5001 AUCGUCUCCGGGAUGAAAUUCACGCCACGCUCCGACCUGAUG

1 no match

5002 UUAUACCCAGGUGAUCACCACUAU

1

1 Su(Ste)

Su(Ste)5003 UGUUUCGUCUUUAGACGGCUCGGGC

1

2 AT-chX

AT-chX-B

5004 UCUCAUCGUCGUAGAACAAGCUCGAGG

1

1 Su(Ste)

Su(Ste)5005 UAAUGUCCCUUAAAUCAGCACUCA

1

1 no annotation

5006 UCUCAUCGUCGUAGAACAAGCCCGUCUGUAAUCGGGUCAAU

1 no match

5007 CAAAGCCUUUCAGACGUUUGACUC

15008 AUGUUUCAUCGUUAGACGGACUACGGGC

1 no match

5009 CGUUGACAAUUCCGAACAUACGC

1 no match

5010 UGGGUCUUCACCGUUGACUUGCCC

15011 AUCAAGGUGGAAAUGAAGAAAGUACA

1 no match

5012 UCUCAUCGUCGUAGAACAAAGCCCGAGG

1 no match

5013 GAGUGUGUCUCGGAUCUACCCAG

1

0 transposon

5014 UCUCAUCUUCGUAGAACAUGCCCGA

1

2 Su(Ste)

Su(Ste)5015 UCGCAUCGUCGUAGAACAAGCCCGUA

1

2 Su(Ste)

Su(Ste)5016 AGAAAAGUCUCAUCGUCGUAGAACAGUCCCG

1 no match

5017 AUCGUCUCGGGGAUGAAAAAAAGGUGGAAAAUGAAGAAAAGUACA

1 no match

5018 CGUCAACUGUGAGGGGAUCCUCAA

1 no match

5019 CUCUCUAUCGUCGUAGAACAACGCCCGA

1 no match

5020 UUCUCAUCGUCGUAGAACAAGCCCGUA

1

1 Su(Ste)

Su(Ste)5021 ACCGGACGGGCCUAGAGUUAUUCCCCC

1

0 coding gene

CG40635-RA¦CG40635

5022 UCGUCAUCGUACGUAGAACAACGCCCGGA

1 no match

5023 ACCGAAAAGUAUGACCAGCUUGGACC

1 no match

5024 UAGAUCGUUCACCGUUGACUAGCCCCA

1 no match

5025 CUCUCAUCUCGUAGAACAACGCCCGUA

1 no match

0 transposon

Su(Ste)DNA

2 Su(Ste)transib4

Su(Ste)LTR

GATE5026 AUUGACCCGAGGUUACAGGACCCGAGCCGUCUAACGAUGAAACAUUCAUCCGAGACGAU
1 no match
5027 AAACAUAUGAUUCCUGUGACCCCGA

15028 UCCAAGCGAACUGUGCCCGAGGCUAUA

1 no match

0 transposon

LTR

springer5029 UCUCUCGUCGUAGAACAAGCCCGU

1 no match

5030 ACAAGAUAUGACCAAAAGACAAAGACCA

1 no match

5031 AUCGUCUCGGGAGUGAAAUACUCAUCGUCGUAGGAACAACGCCCG

1 no match

5032 UGGACGCCGUUUAUGAACGAAAAAGUU
5033 UUGGUAUGGGUUACGAGAUAUCUGA

1

0 transposon

LINE

Cr1a

1

0 transposon

LTR

5034 UGUUUCAUCGUUAGACGGCUCGGGCUCUGUAACGUCGGGUCAAU

1 no matchflea

5035 AUCUGAGGAACCAAGUGAUCCAGCUG

1 no match

5036 UCUCAUCGUCUUAGAACAAGCCCCGA

1 no match

5037 UCUCAUAGUCGUAGAACAAGCCCG

1

1 Su(Ste)

Su(Ste)5038 UCCGAGGAACCAAGUGAUCCAGCUG

1

1 Su(Ste)

Su(Ste)5039 AGUUCAAGCCCGGGUAUUCUGAAGC

1

0 repeat5040 UAUAAUGCCCCGAAGGUUGCCCGA

1

2 transposon

LINER1-element5041 UUCCGAAGAGGAUGGAUACCGCGGC

10 transposon

LTR

GATE

5042 AUAAUGCCCCGAAGGUUGCCCUCU

1

0 transposon

LINER1-element5043 UCUCAUCGUCGUAGAAGAGCCCGA

1 no match

5044 UAGUACAUUAAUUACUCGAUGACGC

1

0 transposon

LTR

invader45045 AUAGGAUCUUCACCGUUGACUAGCCCGA

1 no match

5046 AUCGUCUCGGGAGUGAAAGGAUCCUCAA

1 no match

5047 GAAAACCUGAAGAUGAUCCUGAGU

10 transposon

LINE

Helena5048 AUCGUCUCGGGAGUGAAAUACCGAUCUCCUGAGUCGGACUCCGAG

1 no match

5049 GCACACAGAGGAGAGCGGAUGAGAGCA

1 no match

5050 UCUCAUCGUCGUAGAACAAGCCCGACUGUACUCGGGUCAAU

1 no match

5051 UCUCAUCUCGUAGAACAAGCCCGACUGUACUCGGGUCAAU

1 no match

5052 AUCGUCUCCGGGAUGAAAUGUUUCAUCGUUAGACGGCUCGGA

1 no match

5053 CCGUGGAGACGGCUUUAGGACCUGGU

10 transposon

LTR

ninja-Dsim-like5054 AGAUAAGGGAAGUCGGCAAAAAUAGAU

1 no match

5055 AUCUCAACGUCGUAGAACAAGCCCGA

15056 AGCCCCGUUACUCUGUGGUGACCACGA

1 no match

5057 GUCUCGGGAGAAAGGAUCCUCAA

1 no match

5058 UCAAUGGCGUCUCCUCG

15059 UGUUCAUCGUACGUACGGCUCGGC

1 no match

5060 GUUCAACCGGACGGGCCUAGAGU

10 coding gene

5061 UGCAUGACCCAACAUCCUCCCCCCA

1

1 transposontrf

2 Su(Ste)

Su(Ste)1 no annotation
CG40635-RA¦CG40635
LTR

rooA

5062 UGCUUGAUAUGACCAGCUUGGACCA

15063 AAAAAACUGUGAGGGGAUCCUCAA

1 no match

1 Su(Ste)

Su(Ste)5064 CAGCACACAGAGGAGAGCAGAUGGAGAGCA

1 no match

5065 CAGCAACAGAGGAGAGCAGAUGGAGCA

1 no match

5066 GACUAGCUGGCCGAGGAUCCGAUUUUU
5067 UGUUUCAUCGUUAGACGGCUCGGCCG

11 Su(Ste)

Su(Ste)1

1 AT-chX

5068 CGAAAGCACACCAGAGGAGAGCAGAAUGUAGAGCCA

1 no match

AT-chX-B

5069 AGAAAUGUUUCAUCGUUAGACGGCUCCGGGC

1 no match

5070 GAAUGUUUCAGUCGUUAGACGGCUCGGGUCCUGUAACCUACGGGUCAAU 1 no match
5071 UCUUUAGGUCCGGGUUCGUCAUCAG

15072 GUCCCAACUGUGAGGGGAUCCUCAA

1 no match

0 transposon

LINE5073 GGGGAUAUAGCUCAGUGGUAGAGCA

15074 GAGUCGUCACCGCGCGCAAUCCCGUG

1 no match

5075 CGAAAAUGUUUCAUCGUUAGACGGCCUCGGGC

1 no match

5076 UCCAAACGUACCACGUGCCCCAGU

1 no match

5077 UACGUGGACGAGUUGCUCGAUUUG

1

0 transposon

5078 CUCAUCGUCGUAGAACAAGCCCCGA

1

2 Su(Ste)

Su(Ste)5079 GGAUCCUCAACUGUGAGGGAUCUCAA

1 no match

5080 UGUUUCAUCGUUAGACGGCUCGGGCCUGUAACUC

1 no match

5081 AAAUGUUUCAUCGUUAGACGGCUCGGG

1 no match

5082 AUCGUCUCGGGACUGAAAUCAACUGUGAGGGGACUCCUCAA

1 no match

5083 GAUAAAAACCGAAUUACACGUACAAG

1

1 repeattrf5084 UAAGAACCGUGAGAUAUCGCUAAUC

1

0 no annotation

5085 UGAUACCGAGAGUGACAAUGGUUGA

1

1 transposon

LTR

gypsy35086 UACAGUGCGAGGAGGCCCGUAUUAC

1

0 transposon

LTR

ninja-Dsim-like5087 UGAGCUGGGGUUAGACCGUCGUGAGAC

1

1 ncRNA

5088 UAGGCUGAGCGGAGAACCAGAGU

1

0 transposonLow̲complexity

F-element

5089 AUCCUCAACUGUGAGGGACCUCAA

1 no match

5090 UAUGCAAUAUUUGUUGCGCCCCGGGA

1

0 transposon

LTR

opus

5091 AAAAUGUUUCAUCGUUAGACGGCUCGGG

1 no match

5092 UGUUUCAUCGUUAGACGGCUCGAG

15093 UCUCAUCGUCGUAGAACGACGCCCGA

1 no match

5094 CAGCACACAGAGGAGAGGAGAUGAGAGCA

1 no match

5095 UUCCGAGGAACCAAUUUAUCCAGCU

15096 UAAAUAGACUAAUCGGACAGGUGACUCGG

1 no match

5097 GUCUCUAUCGUCGUAGAACAAGCCCGUA

1 no match

5098 UCUUCUUCUCGACGUUGACCAGCCU

15099 UAACAAGAUGCAUACGAUGUGCUC

1 no match

5100 UCUCAUCGUCGUAGAACAAGCCCGAGCUG

1 no match

5101 GGCUCCGGGGGAAGUAUGGUUGCAAAG

1

0 ncRNA

5102 UAAACAAUUGGAAGAUAAGACCCA

1

1 transposon

5103 AUCUCAUCAUCGUAGAACAAGCCCCGA

1 no match

5104 UGUCUUCAUUUAAGCUCUGACUCGAA

15105 UCUCAUCGUCGUAGACAAGGCCCGACUGUAACGUCGGGUCAAU

1 no match

5106 AGGAGUCCUCAACUGUGAGGGAUCCGUCAA

1 no match

5107 AUAAAAGAAAUCCUGACAAGAUCCCGGGC

1 no match

5108 AUUCGUGACGAGAAACGUCGAGCCGCGAAAAA

1 no match

5109 UCUUCACCGUUGACUCGGCCCACACA

15110 AUCUCAACUGUGAGGGGGAUCCUCAA

1 no match

5111 GUCUAACGCCGGAGACAGUUUGA

15112 UCUCAUCGUCGUAGAACAACGCCCUAA

1 no match

5113 UUCUCAUCUCGUAGAACAAGCCCGA

1 no match

5114 UCAGCAAGCACCCCAGACUGCACCCGG

1

0 coding gene

CG1472-RA¦sec24

5115 GAAACCCGAUGGAACGAAAUGUCAUU

1

0 coding gene

CG3354-RA¦Mst77F

5116 UGUAACGUCGGGUCAAU

1

2 no annotation

5117 GCUUGGGAACACCCCGUGUUGUUGGCC

1

1 ncRNA

5118 UCUCAUCGUCGUAGAACAAGCCGAG

1 no match

5119 CGAAAUCUCAUCGUCUAGAACAGCCCGACUGUAACUCGGGGUCAAU

1 no match

5120 UUGGAUGCCCAGAUACGAAAAACAUA

15121 UCUCAUCGUCCGUAGAACAAGCCCG

1 no match

5122 UGAUACCGAGAAUGACACUGGUUGA

15123 GGCACACAGAGGAGAGCGAGAUGAGAGCAA

1 no match

5124 GCGAGCAGGACUGGGCGGCGG

1 no match

5125 UGGUACCUUUCCCGAUGAGCCAGU

1 no match

5126 CUCAACUGUGGGAUCCUCAA

1 no match

5127 UCUGGUUGAACGUGUCCUGAAAUUAG

1

0 Su(Ste)

Su(Ste)5128 UAGAUCUUCACCAUUGACUUGCCCC

1

1 Su(Ste)

Su(Ste)5129 UGUUUCAUCGGUAGACGGCUCGGGC

1

1 AT-chX

AT-chX-B

5130 UCUCAUCGUCGUAGAAGAAUCCCGA

1

2 Su(Ste)

Su(Ste)5131 AUCUCAUCGUGUAGAACAAGCCCGA

1 no match

5132 CCUCAACUGUAGGAUCCUCAA

1 no match

5133 UUCCGAGGAACCAAUUGAUUCAGCUG

1

0 Su(Ste)

Su(Ste)5134 GGAACUGUGAGGGGAUCCUCAA

1 no match

5135 GCCAGGCCCGUAUAACGUUAAUGAU

1

0 ncRNArRNA

5136 UUGACCUGCUCACAGUAAUUAAGAA

1

0 no annotation

5137 CAGCACACAGAGGAGAGCGGAUGAGAGA

1 no match

5138 UACUUGACCCCCGAUCUGUGGAAGGA

15139 AUCGUCUCGGGGAUGAAAAUGUUUUCAUCGUUAGACGGCUCGGGC

1 no match

5140 AUCUCAUCGUCGUAGAACAAAGCCCCA

1 no match

5141 AUAGAUCUUCACCGUUGACUUGGCCCC

12 Su(Ste)5142 UGGACCUUUUUCCGAUGAGCCAGUG

1

1 transposon

5143 UGUUUCAUCGUUAGGACGGCUCGGGC

1 no match

5144 UGUUUCAUCGAUAGACGGCUCGGGC

10 ncRNA

G6tRNA

Low̲complexity

F-elementrRNA

1 AT-chX

AT-chX-B

1 Su(Ste)

Su(Ste)0 transposon

LTR

ninja-Dsim-like

rRNA
LINE

Cr1a

0 repeattrf

1 Su(Ste)

Su(Ste)0 transposon

LTR

micropia

5SrRNA

0 no annotation
1 transposon

LTR

0 coding gene

1 AT-chX

gypsy3CG5920-RA¦sop

Su(Ste)LINE

G
AT-chX-B

5145 UACAAUACCCAGUUACUCGUGCCA

1

0 no annotation

5146 UUAAUGCCGGAAGCGAUCCCAGUU

12 AT-chX

5147 UAUUACAUAGAUGUAGAUGGGUCGGAG

1

0 no annotation

5148 UCUCAUCGUCGUAAAGAAGAAGCCCG

1 no match

5149 UAACCAAUAACGGCCAGAGAAAUUUC

15150 CCUCAACUGUGAGGGGAUCCUCUAA

1 no match

5151 CUUGGACCGAACACUUUGAACCAAGU
5152 CUGUAACUCCGGGUC

AT-chX-B

1 ncRNA

alphagamma-element

10 Su(Ste)

Su(Ste)1

1 no annotation

5153 CAAGAUAUGACCAACGCAAAGACACU

1

1 transposon

LINE

Cr1a

5154 UUUCUACCAAAUAAAUAGGACCUGAAG

1

0 transposon

LTR

Quasimodo

5155 UGUGCCGGAGCGUGGGACCCCGAAGA

1

0 transposon

LTR

roo

5156 UUCCUCGGGAUCAAGGACAACGAGUUC

1

0 no annotation

5157 GCCCCGUACUCUGUGGUGACCAG

1

1 transposon

LINEbaggins

5158 AUCUCAUCGUCGUAGAACAGGCCCG

12 Su(Ste)5159 GACACAGAGGAGAGCAGAUGAGACA

1 no match

5160 UCGUCAGUCGUCGUAGAACAAGCCCGG

1 no match

5161 UCUCAUCGUCGUAGAACAACGCCCGACUGUAACGUCGGGUCAAU

1 no match

5162 UUCAUCGUCGUAGAACUAGCCCGA

1

1 Su(Ste)5163 CAAGAUAUGACCAAAGCAAAAACAC

1

0 transposon

5164 CGGGCUCAACCUGGGAACUGCGUU

1 no match

5165 AAGACACCGUUUCCCGUCCGAUCAA

1 no match

5166 UUCACCGUUGACUAGCCCCA

1

0 Su(Ste)5167 CUAGAUCUUCACCGUUGACUAGCCC

1

1 Su(Ste)5168 CAAGAUAUGACCAAAGCAAAGAUAA

1

1 transposon

DNA5169 CCCAUCUCACCAGACUCUUUGGCC

10 transposon

LTR

diver25170 GCUUCUGAGCGCGUAAACCGAU

1

0 transposon

LTR

G4

5171 UAGUUUCGAUCGUUAGACGGCUCGGGC

1 no match

5172 GUGCAUAUCAUUCACGCCACGCUCCGA

1

0 Su(Ste)

5173 GGUUCCAUGGUGUAAUGGUUAGCA

1

0 ncRNA

5174 UUGAUGGUGGCAACCGACUCGACGA

1

0 transposon

LINE

Doc4

5175 GAUGUCCACCAAAGGCAUGCCCGAUG

1

0 transposon

LTR

opus

5176 UGUUUCAUCGUUAGACGGCUCAGG

1

1 AT-chX

5177 UGUUUCAUCGUUAGACGGCUCGGGUUU

1 no match

5178 CGAAAUCUCAUCGUCGUAGAACAGCCCG

1 no match

5179 CCUCAACUGUGAGGGGAGUCCUCAA

1 no match

5180 AACCACUGUGAGGGGUAUCCUCAA

1 no match

5181 AAACUUCGGGAUAAGGAUUGGCUCUGA

1

1 ncRNA

5182 AUACUGAGUCGUUUACCGAGGGCC

10 transposon

LTR

G4

5183 UGAUACCGAGAAUGACAACGGUUGA

1

1 transposon

LTR

gypsy35184 UUUGUAGGUGUACUGACCCAGUCGG

1

0 transposon

LINEbaggins

5185 UAGAUCUUCCCGUUGACUUGGCC

1 no match

5186 UGUUUCAUCGUUAGACGGCUCCGGGCG

1 no match

5187 AUCGUCAUCGUACGUAGAACAAGCCCGG

1 no match

5188 UCUCAUCGUCGUAGAACAAGCCCGACCUGUAACUACGGGUCGAAU

1 no match

5189 CGAAAUCCGAACGUACCACGGUGCCCCAGU

1 no match

5190 UGUUUCAUCGUUAGACGGCCCCGGC

15191 UAGAUCUUCACCGUGACUUGGCCCCG

1 no match

5192 UGGUUUCAUCGUUAGACGCUCGGGCCG

1 no match

5193 AGGCAACUGUGAGGGGGAUCCUCAA

1 no match

5194 UAAUAUUGGACCCAGUACACUGCCU

15195 AGUCCUCAACUGUGAGGGAUCCUCAA

1 no match

5196 UCUCAUCGUCGUAGAACAAGCCAG

1

1 Su(Ste)

Su(Ste)5197 AGUUCAAGCCCGGGUAUUCUGAAG

1

0 repeattrf

5198 UGUUUCAUCGUUAGACGACUCGGGUC

1 no match

5199 UAGAUCUUCACCGUUGACUAGCCCCACUGUAACUCGGGGUCAAU

1 no match

5200 CCAAGAUAUGACCAAAGCAAAGACACUA

1

1 transposon

5201 CCUCUUCGUCGUAGAACAAGCCCGA

1

2 Su(Ste)5202 UCCUCAACUGUGAGGGGUCCUCAA

1 no match

5203 UUAUAAGGAUGAUGAUACCGACUAAGG

1

Su(Ste)Su(Ste)DNA

Su(Ste)Su(Ste)1360

Su(Ste)tRNA

AT-chX-B

rRNA

2 AT-chX

1 transposon

1360

AT-chX-B

LINE

LINE

Doc

Cr1a
Su(Ste)1 no annotation

5204 AUCGUCUCGGGACUGAAACCUCUCAUCCGUUCGUACGAACAACCGCCCGUA
1 no match
5205 AAUCUCAUCGCCGUAGAACAAGCCCGA

1 no match

5206 UUAAUUCCGAUAACGAACGAGAGACUC

1 no match

5207 GACUAGCUGGCCGAGUAUUUGAUAA

15208 UCGUCAUCGUGUAGAACAAGCCCGGA

1 no match

5209 AGUGUUUCAUCGUUAGACGGCUCGGGC

1

2 AT-chX

5210 UGUAUAGAUGAGGUAUAAGGUUGGCC

10 transposonLow̲complexity

F-element

5211 GCACACAGACGGAGAGCAGAUGAGACGCA

1 no match

5212 UCCAAUUAAAAAAUGACCUGGUGU

10 transposon

LTR

roo

5213 GGGGCCCGAAAACACGAGAGCCGAGC

1

0 transposon

LTR

opus

5214 CCUCAUCGUCGUAGAACAAGCCCGACUGUACUAAACGGGUCAAU

1 no match

5215 AGAAAGGUGGAAAUGAAGAAAGUACA

1 no match

5216 UCUCCUGGAGACACCAAUGCUGGCC

15217 UACUCAUCGUCGUGAACAAGCCCGA

1 no match

5218 CAGCACACAGAGGAGAGCAGAUGAAAGCA

1 no match

5219 UGUUCAUCGUUAGACGGCUCGGGU

1 no match

5220 AUACUCAUUCGUCCGUUAGAACAAGCCCCGA

1 no match

5221 UAAAGAAUCCUGACAAGAUCCCGGA

1

1 transposon

LTR

invader1

5222 UGUCCACCAAAGGCAUGCCCGAUGU

1

0 transposon

LTR

opus

5223 UUUGUGUACCCCAGAUUGUUGACUCU

1

1 no annotation

5224 UCAAACUGAAGGAGUACGAAUGAUC

1

1 transposon

LINER1-element5225 AUCGUCUCGGGAGUGAAAUAACAUACACGCCCAGGAGUCUGUUCC

1 no match

5226 AGGCUCAACUGUGAGGGGAUCCUCAA

1 no match

5227 UGGAAUUUUUCCGAUGAGCCAGU

1 no match

1 Su(Ste)

Su(Ste)AT-chX-B

1 coding gene

pseudogene

5228 AGGGAGUUUGACUGGGGCGGUAC

15229 CGCACACGAGAGGAGAGCAGAUGGAGAGCA

1 no match

0 ncRNArRNA

5230 AUAAGAUCUUCACCGUUGACUAGCCCCA

15231 CUCUCAUUCGUCGUACGAACAAGCCCGACUGUAACCUCGGGUCAAU

1 no match

2 Su(Ste)

Su(Ste)5232 AUAAAUGCCAGAAUUUUUAUUGGGGGUUC

1 no match

5233 AUGUUUUCAUCGUUAGACGGCUCGGGAAA

1 no match

5234 UUCCGUACGUCCAGAUUGGCUUGAG

1

0 transposon

LINE

G2

5235 GCUUCACCUUGAAGACCUUAAGUCCCG

1

0 transposon

LINE

BS

5236 UCUCAUCGUCGUAGAACAAGCCA

1

1 Su(Ste)

Su(Ste)5237 ACGCCACACUGCGUGUUAACGACCUGAC

1

0 coding gene

CG7008-RA¦Tudor-SN

5238 UAGAUCUUCACCGUUGACUAGCCCCACUGUAACUCGGG

1 no match

5239 AAAACCUAGUUACUUACGGGCUCAA

1

0 no annotation

5240 GAACGUACCUUGAGCAUAUAUG

10 ncRNA

5241 AAAAAACUUGAAGAUGAUCCUGAGUCC

1 no match

5242 UCGACGGAGCUCACUUACCUAAUGU

1

0 transposon

LINER1-element5243 UUCGAAUUGCCCUAACGGUGUAACA

1

0 transposon

LTR

flea

5244 UCAACAGUGAGGGGAUCCUCAA

1 no match

5245 CGAAAGCACACCAGAGGAGAGCAGAUGUAGAGCCA

1 no match

5246 UCCGAACGUACCACGGUGCCCCAGUA

1

1 transposonLow̲complexity

F-element

5247 CAAGGUAUGACCUAAGCAAAGACAC

1

2 transposon

LINE

Cr1a

5248 UGAUCUUCACCGUUGACUAGCCC

1

1 Su(Ste)5249 UAAUGUUGGCCAAUUUCGAGUAUAUC

1

0 transposon

5250 UAGAUCCUCACCGUUGACUAGCCCC

1

1 Su(Ste)

Su(Ste)5251 AUUUCUCAUCGUCGUAGAACAAGCCCCGA

1 no match

5252 UAGGUUAUGGACCCAGUAAACAUU

1

1 ncRNA

alphagamma-element5253 UGUUUCAUCGUCGUAGAAGAAGCCCGA

1

2 no annotation

5254 UCUCACCUCGUAGAACAAGCCCG

1

2 no annotationrRNA

Su(Ste)LINE

Cr1aSupplementary Table 2
Nagao et al.

Su(Ste)-4 (common)
Alignment----UCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAAGAAGCCCGA--------------UUCUCAUCGUCGUAGAACAAGCCCGA--------------AUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGAG--------------UCUCAUCUUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGAGG-------------UCUCAUCGUCGUAGAACAAGCCCAA---------------CCUCAUCGUCGUAGAACAAGCCCGA-------------UUUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGU---------------UCUCAUCGUCGUAGAAGAAGCCCG----------------UCUCAUCGUCUUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACGAGCCCGA---------------UCUCAUCGUCGUAGAACAACCCCGA---------------UCUCAUCGUCGUAGAGCAAGCCCGA---------------UCUCAUCGUCGUAGAACAGGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGG---------------UCUCAUCGUCGUAGGACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCC-----------------UCUCAUCGUCGUAGAACAAGUCCGA---------------UCUCAUCGUCGUAGAACAAGCCCUA---------------UCUCGUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCGA----------------UCUCAUCGCCGUAGAACAAGCCCGA----------------CUCAUCGUCGUAGAACAAGCCCGA--------------UACUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCCG---------------UCUCAUCGUCGUAGAACAAGCCUGA---------------UCUCAUCGUCGUAGAAUAAGCCCGA---------------UCUCAUCGUCGUGGAACAAGCCCGA---------------UCUCACCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGAC-------------GUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGAU--------------UCUCAUCGUCGUAGAUCAAGCCCGA---------------UCUCAUCGUCCUAGAACAAGCCCGA---------------UGUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAACCCGA---------------UCUCAUAGUCGUAGAACAAGCCCGA---------------UCACAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCG-----------------UCUCAUCGUCGUAGAACAAGCCCGC---------------UCUCAUCGUCGUAGAACAAGCCCGGG--------------UCCCAUCGUCGUAGAACAAGCCCGA--------------CUCUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAACAAGCCCGAGC-------------UCUCAUCGUCGUAGAACAAGCCGGA---------------UCUCAUCGUCGUAGAAGAAGCCCGAGG-------------UCUCAUCGUAGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCU----------------UCUCAUCGUCGUAGAACAAGCCCGGGG------------AUCUCAUCGUCGUAGAACAAGCCCGAGG----------

Mismatches
0
0
1
0
1
0
1
0
1
1
0
1
1
1
1
1
1
1
1
1
0
1
1
1
2
1
0
1
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
Total

AGO3
1670
151
10
24
3
14
1
94
4
5
8
17
2
1
2
1
1
4
27
1
3
1
3
1
2
2
1
1
1
13
2
1
1
1
1
20
1
1
1
1
2
2
1
6
2
1
1
2
2
1
6
2
1
1
2,128

Aub
43207
6212
1183
1138
768
616
436
278
263
169
129
128
117
102
80
68
66
62
58
58
55
48
47
46
44
35
35
32
32
31
27
27
26
25
21
19
18
16
16
13
11
11
11
10
7
5
5
3
3
3
2
2
2
1
55,827AGO3Aub

Su(Ste)-4 (AGO3 unique)
Alignment----UCUCAUCGUCGUAGAACAAGCCCGAGGA-----------------------UAGAACAAGCCCGAGGAACUGUCGAA-------------CGUAGAACAAGCCCGAGGAACUGUCGC----UCUCAUCGUCGUAGAACGAGCCCGAGG-------------UCUCAUCGUCGUAGAACAAGCCCGCGG------------AUCUCAUCGUCCUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGAUU-------------UCUCAUCGUCGUAGAACAAGCCCGGGGU------------UCUCAUCGUCGUAGAACAAGCCCGAUC-------------UCUCAUCGUCGUAGAACAAGCCCGAUGA---------

Mismatches
0
0
1
1
1
2
2
2
2
1
Total

12
3
2
2
1
1
1
1
1
1
25

0
0
0
0
0
0
0
0
0
0
0

Su(Ste)-4 (Aub unique)
Alignment---UUCUCAUCGUCGUAGAACAAGCCCG---------------AUCUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAACAAUCCCGA--------------UCGUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAUAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCUAG--------------UCUCAUCCUCGUAGAACAAGCCCGA---------------UCUCAUCGUCAUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCA----------------UCUCAUCGUCGCAGAACAAGCCCGA-------------UUUCUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCUUCGUAGAACAAGCCCG--------------AAUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUUGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCC----------------UCUCAUCGUCGUAGGACAAGCCCG--------------AUUCUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAACAUGCCCGA---------------UCUCAUCGUCGUAGAAAAAGCCCG---------------CUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAGGCCCG------------------UCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUUGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCC------------------UCUCAUCGUCGUAGAACAAGCUCG----------------UCUCAUCGUCGUAGAACAAGCUCGA---------------CCUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAAGAAGCCCGAG--------------UCUCAUCGUCGUAGAACAAGCCCCA---------------UCUCAUCGUCGUAGAACAAGCCAGA--------------AUCUCAUCGUCGUAGAAGAAGCCCGA----------------CUCAUCGUCGUAGAACAAGCCCGAGG------------UUCUCAUCGUCGUAGAAGAAGCCCGA---------------UCUCAUCGUCGUUGAACAAGCCCGA---------------UCUCAUCGUCGUAGAAGAAGCCCAA---------------UCUUAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGCACAAGCCCGA---------------UCUCAUCGUCGUAGUACAAGCCCGA-------------AUUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGC-------------------UCUCAUCGUCUUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAAUAAGCCCG---------------UACUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGAAGAACAAGCCCGA---------------UCUCAUCGCCGUAGAACAAGCCCG---------------UUCUCAUCGUCGUAGAAGAAGCCCG----------------UCUCAUCGACGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACCAGCCCGA--------------UCGUCAUCGUCGUAGAACAAGCCCG---------------UUCUCAUCGUCGUAGAACAAGCCCAA--------------AUCUCAUCUUCGUAGAACAAGCCCGA-----------------UCAUCGUCGUAGAACAAGCCCG----------------UCUCUUCGUCGUAGAACAAGCCCGA---------------ACUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGAAGUACAAGCCCGA---------------UCUCAUCGUCGUAGAACGAGCCCG---------------UUCUAAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAUCCCG----------------UCUCAUCGUCGUAGAGCAAGCCCG----------------UCUCAUCGUCGUAGAACAAGCCCUAGG-----------GUUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCUUCGUAGAACAAGCCCAA----------------CUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAACAAGCCCGACG------------UCCUCAUCGUCGUAGAACAAGCCCGA---------------UCUAAUCGUCGUAGAACAAGCCCGA-------------UUUCUCAUCGUCGUAGAAGAAGCCCGA-------------UUUCUCAUCUUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUUGAACAAGCCCG----------------UCUCAACGUCGUAGAACAAGCCCGA---------------UCUCACCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAACAAGUCCGAG--------------UCUCAUCGUCGUAGAUCAAGCCCG-------------UUUUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAUAACAAGCCCG----------------UCUCAUCGUCGUGGAACAAGCCCG----------------UCUCAUCAUCGUAGAACAAGCCCGAG--------------UCUCAUCGUCGCAGAACAAGCCCG----------------UCUCAUCGUCGUAGACCAAGCCCGA-----------------UCAUCGUCGUAUAACAAGCCCGA---------------UCUCAUCGUCGUGGAAGAAGCCCG----------------UCUCAUCUUCGUAGAAGAAGCCCGA---------------UCUCAUCGUCGUAGAACAACCCCG-------------

Mismatches

AGO3
0
1
1
2
1
1
1
1
1
1
0
1
2
1
1
1
1
1
1
1
1
0
1
0
1
1
1
1
1
1
2
0
1
1
2
1
1
1
1
0
1
1
1
1
1
1
1
1
2
1
2
0
1
1
2
1
1
1
1
1
1
2
0
1
1
1
1
1
1
1
1
1
1
0
1
1
1
1
1
1
2
2
1

Aub
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0

204
118
77
68
66
59
56
53
51
50
49
44
43
43
42
36
33
33
31
30
28
27
24
23
22
21
20
19
18
18
15
14
13
12
12
12
12
11
11
11
11
11
10
9
9
9
9
9
9
9
9
8
8
8
8
7
7
7
7
7
7
7
6
6
6
6
6
6
6
6
6
6
6
5
5
5
5
5
5
5
5
5
5

---GUCUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAAAACAAGCCCG---------------UUCUCAUCGUCGUAGAACAAGCCC-----------------CCUCAUCGUCGUAGAACAAGCCCGAG--------------UCUCAUCUUCGUAGAACAAGCCCGAG--------------UCUCAUCGUCGUAGAACAAGCCUGAG--------------UCUCAUCGUUGUAGAACAAGCCCG----------------UCUCGUCGUCGUAGAACAAGCCCG----------------UCUCAUUGUCGUAGAACAAGCCCG---------------UUCUCAUCGUCGUAGAACAAGCCCGU-------------AAUCUCAUCGUCGUAGAACAAGCCCG---------------AUCUCGUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCUG---------------AUCUCAUCGUCGUAGAACAAGCCCGU--------------UUCUCGUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGACUA------------UCUCAUCGUCGUAGAACAAGUCCG---------------UUCUCAUCGUCGUAGAACAGGCCCG----------------UCUCAUCGUCGUAGUACAAGCCCGC---------------UCUCAUCUUCAUAGAACAAGCCCG--------------AGUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUUGUAGAACAAGCCCGAGG-----------GGUCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUAGUCGUAGAACAAGCCCGAGG-----------UUUCUCAUCGUCGUAGAACAAACCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGUG--------------UCUCAUCGUCGUAGAACAAGCCAGU---------------UCUCAUCGUCGCAGAACAAGCCCGC--------------UUCUCAUCGUCGUAGAACAAGCCCGG---------------UCUCAUCGUCGUAGAACAAGCUCGAG--------------UCUCAUCGUCGUAGAACAAGCACGA--------------ACCUCAUCGUCGUAGAACAAGCCCGA-------------AUACUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCCUCGUAGAACAAGCCCG--------------CUUCUCAUCGUCGUAGAACAAGCCCGA--------------AUCUCAUCGUCGUAGAACAAGCCCAA--------------AUCUCAUCGUCGUAGAACAAGCCCGAG--------------UCUCAUCGACGUAGAACAAGCCCG----------------UCUCAUCGUCGUAUAACAAGCCCAA--------------UUCUCAUCGUCGUAGAACAAGCCCC----------------UCUCAUCGUCGUAAAACAAGCCCGA--------------UUCUCAUCGUCGUAGAACAAGCCCGAG--------------UCUCAUCGUCGUAGAACAAGCCCCC--------------UUCUCAUCGUCGUAGAACAAGCCAGA---------------UCUCAUCGUCGUACAACAAGCCCG---------------UUCUCAUCGUCGUAGAACGAGCCCGA--------------UUCUCAUCGACGUAGAACAAGCCCGA--------------UUCUCAUCGUCGUAGAACAAGCCCA---------------AUCUCAUCGUCGUAGAACAAGCCUGA----------------CUCAUCGUCGUAGAAGAAGCCCGAG--------------UCUCAUCGUCCUAGAACAAGCCCG---------------AUCUCAUCGUCGUAGAACAACCCCGA------------AUUUCUCAUCGUCGUAGAACAAGCCCGA-------------UUCGUCAUCGUCGUAGAACAAGCCCGA--------------AUCUCAUCGUUGUAGAACAAGCCCGA--------------UUCUCAUCGUCAUAGAACAAGCCCGA---------------UCUCAUCGUCAUAGAACAAGCCCG----------------UCUCAUCGUCGCUGAACAAGCCCGA---------------UCUCAUCGUUUUAGAACAAGCCCGA--------------AUCUCAUCGUCGUAGAACGAGCCCGA--------------UUCUCAUCCUCGUAGAACAAGCCCGA-------------UUCGUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAAGAAGCCCGU--------------AUCUCAUUGUCGUAGAACAAGCCCGA--------------AUCUCAUCGUCGUAGAAUAAGCCCGA------------AAUUCUCAUCGUCGUAGAACAAGCCCG---------------AUCUCAUCGUCGUAGAACAAGCCCUA---------------UCUCAUCGUCGUCGAACAAGCCCGA---------------UCUCAUCGUCGUAGUAGAAGCCCG----------------UCUCAUCGUCGUAGGACAAGCCCUA-----------------UCAUCGUCGUAGAACAAGCCCAA--------------UUCCCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCUUUGUAGAACAAGCCCGA--------------AUCUCAUCGUCGUAGAACAAUCCCGA----------------CUCAUCGUCGUAGAAGAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCAG---------------UGUCAUCGUCGUAGAACAAGCCCG---------------AUCUCACCGUCGUAGAACAAGCCCGA----------------CUCAUCGUCGUAGAACAAGCCCGAG--------------UCUAAUCGUCUUAGAACAAGCCCGA---------------UCUCAUCGUCGUGGAAGAAGCCCGA---------------UCUUAUCGUCGUAGAACAAGCCCGAG--------------UCUCAUCUUCGUAGAACAAGCCCGU--------------UUCUCAUCGUCGUAGAACAAUCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCUC------------

1
1
0
1
1
1
1
1
1
1
2
2
1
2
1
2
1
1
2
2
2
1
2
1
1
1
2
2
1
1
1
2
2
1
1
2
1
1
2
1
1
0
2
1
1
1
1
1
2
1
1
2
1
2
2
1
1
2
2
2
1
2
2
2
2
2
2
1
2
2
1
1
2
2
1
2
1
2
0
2
2
1
2
1
2

0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0

5
5
5
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2

---UUCUCAUCGUCGUAGAACAACCCCGA---------------UCUCAUCGUCGUACAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAACCCG--------------UUUCUCACCGUCGUAGAACAAGCCCGA--------------UUCUCAUUGUCGUAGAACAAGCCCGA--------------UUCUCAUCGUCGUAGAACAAGUCCGA---------------UCUCAUCUCCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCGCGA-------------AUCCUCAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAAGAAACCCGA--------------AUCUCAUCGUCCUAGAACAAGCCCG----------------UCUUAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGUAGAGGAAGCCCGA--------------UACUCAUCUUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAGCAAGCCCAA---------------UCUCAUCGUCGUAGAACAAGCCAGAG--------------UCUCAUCGUCGUAGAACAAGCGA----------------AUCUCAUCGUCGUAGAACAAGCCCUAG------------UUUCACAUCGUCGUAGAACAAGCCCGA--------------UUCUCAUCGUCGUAGAACAAGCCCGCG--------------UCUCAUCGUCGUAGAACAAGUCCGAGG------------UUCUCAUCGUCGUAGAGCAAGCCCGA--------------AUCUCAUCGUCGUAGAACAAGCCCGC--------------AUCUUAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAAAAGAAGCCCGA---------------UCUCAUCGUCGUAGAACAUCCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCAU---------------UCUCAUCUUCGUAGAACAAGCCCGAGG-------------UCUCAUCGUCGUAUAACGAGCCCGA---------------UCUCAUCUUCGUAGAACAGGCCCGA---------------UCUCAUCGUCGUAUAACAAGCCCGAGG------------CUCUCAUCGUCGUAGAAGAAGCCCGA---------------UCUCAUCGUCGUAGAACACGCC------------------UCUCAUCGUCGUAGACCAAGCCCA----------------UCUCAUCGUCGUAGAACAAGCCA----------------UUCUCAUCGUCGUAGAACAAGCCCCA---------------UCUCAUCGUCGUAGAACAAGCCCGACU------------AUCUCAUCGUCGUAGAACAAGUCCGA--------------UUCUCAUCUUCGUAGAACAAGCCCGA--------------AUCUCAUCGUCGUAGAACAAGCUCG----------------UCUCACCGUCGUAGAACAAGCCCGAG--------------UCUCAUCGUCGUAGAACAAGCCCGCU--------------UCUCCUCGUCGUAGAACAAGCCCG----------------UCUCAUAGUCGUAGAACAAGCCCG----------------UCUCAUCGUCUUAGAACAAGCCCGC--------------UUCUCAUCGUCGUAGAACAAGCCG----------------UACUCAUCGUCGUAGAACAAGCCCGAG--------------ACUCAUCGUCGUAGAACAAUCCCGA---------------UCUCAUCGUCGUAGAACAGGCCCUA---------------UCUCAUCGGCGUAGAACAAGCCCAA---------------UCUCAUCGUCGUAGCACAAGCCCG----------------UCUCAUCGUCGUAGAACAAGCCAA----------------UCUCAUCGUCGUAGAACAAGCCCGGU------------AUUCUCAUCGUCGUAGAACAAGCCC-----------------CCUCAUCGUCGUCGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAACGC------------------UCUCAUCUUCGUAGAACAAGCC------------------UCUUAUCGUCGUAGAACAAGCCCGAC--------------GCUCAUCGUCGUAGAACAAGCCCG---------------AUCUCAUCGUCGUAGAACAAGCCCU----------------UCUCAUCGUCGUAGAACCAGCCCG----------------UCACAUCGUCGUAGAACAAGCUCG----------------UCUCAUCCUCGUAGAACAAGCCCAA---------------UCUCAUCGUCGUAGAACAGCCCCGA---------------ACUCAUCGUCGUAGAACAAGCCCA---------------AUCUCAUCGUCGUAGAACAGGCCCG----------------UCUCAUCGUCGUAGAACAAGCACGAG-------------CUCUCAUCGUCGUAGAACAAGCCG-----------------CCUCAUCGUCGCAGAACAAGCCCGA---------------UCAAAUCGUCGUAGAACAAGCCCGA--------------UUCCCAUCGUCGUAGAACAAUCCCGA--------------UUCUCAUCGUCGUAGAACAAGCCCCG---------------UCUCAUCGUCGUAGAACAAGCGAG----------------UCUCAUCGUCGUAGAAGAAUCCCGA-------------ACUCUCAUCGUCGUAGAACAAGCCCGA--------------UACUCAUCGUCGUAGAACAAGCCCGAGG-------------UCUCAUCUUCGUAGAACAUGCCCGA--------------UUCUCAUCGUCGUAGAACAAGCCUGA---------------UCUCAUCGUCGUAGAAGCAGCCCG----------------UCUCAUCGUCGUAGAACAAGACCGA--------------UUCUCAUCGUCGUAGAACAAUCCCG----------------UCUCCUCGUCGUAGAACAAGCCCGA---------------CCUCAUCGUCGUAGAACAAGCCCGAGG-------------UCUCAUCGUUGUAGAACAAGCCCUAG-------------UUCUCAUCGUCGUAGAACAAGCCCGC------------

1
1
1
1
1
1
2
1
2
2
2
1
2
2
2
1
2
2
1
1
1
1
2
2
2
2
2
1
2
2
1
2
1
2
1
1
2
2
1
2
1
2
1
1
2
1
1
2
2
2
1
2
2
1
2
2
1
2
1
2
1
2
2
2
2
2
1
2
2
2
2
2
2
2
2
1
2
1
2
1
1
1
1
2
1

0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0

2
2
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1

---UUCUCAUCGUCGUAUAACAAGCCCGA---------------CCUCAUCGUCGUAGAAGAAGCCCGA-------------UUUCUCAUCCUCGUAGAACAAGCCCG----------------UCUCAUCGUCUUAGAACAAGCCCGAG--------------UCUCAUCGUCGUAGAACAAGCCGG----------------UCUCAUCGUCGUAGAACAAGCCAG--------------UGUCUCAUCGUCGUAGAACAAGCCCGA--------------UUCUCAACGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCGCGAG--------------UCUCGUCGUCGUAGAAGAAGCCCGA---------------UCUCAUCGUCGUAGAACACGCCCGA--------------AUCUCAUCGUCUUAGAACAAGCCCGA---------------UCUCAUUGUCGUAGAACAAGCCCUA-------------UUUCUCAUCGUCGUAGAAGAAGCCCG----------------UCUCAUCGUCGUAGGAGAAGCCCGA---------------UCUCAUCGUUGUAGAGCAAGCCCGA--------------AUCUCAUCGUCGUAGGACAAGCCCGA----------------CCCAUCGUCGUAGAACAAGCCCGA--------------UUCCCAUCGUCGUAGAACAAGCCCAA--------------AUCUCAUCGUCGUAGAACAAGCUCGA--------------GUCUCAUCGUCGUAGAACAAGCCCGU---------------UCUCAUCUUCGUAGAACAAACCCGA---------------UCUCAUCGUCGUAGAACAAGGCCGA--------------UUCUCAUCGUCGUAGAACAGGCCCGA---------------UCUCAUCGUCGUAGCAGAAGCCCGA---------------CCUCAUCGUCGUAGAACAAGCCCAA--------------AUCUCAUCGUCGUAGAACAAGUCCGAG-------------AUCUCAUCGGCGUAGAACAAGCCCGA---------------CCUCAUCGUCUUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGAGU---------CUUUUCUCAUCGUCGUAGAACAAGCCCGA--------------AUCUCAACGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAUACCGA---------------UCUCAUCGUCGUAGAGCAAGCCCUA----------------CUCAUCGUCGUUGAACAAGCCCGA---------------UCUCAUCGUCGUAAAACAAGCCCAA--------------UACUCAUCGUCGUAGAACAAGCCCGC---------------UCUCAUCGUCGUAUAACAACCCCGA--------------UUCUCAUCGUAGUAGAACAAGCCCGA---------------UCUUAUCGUCGUAGAACAAGCCCUA--------------UUCUCAUCGUCGUAGAACAAGCCCGAGG-------------UCUCAUCGUCAUAGAACAAGCCCC---------------UUCUCAUCGUCGUAGAACAAGCCGGA-----------------UCAUCGUCGUAGAACAAGCCCGAGG------------AUCUCAUCGUCGUAGAACAAGCCC-----------------CCUCUUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCUUAGAACAAGCCCAA------------------CAUCGUCGUAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAGCCCGAGA-----------GAUCUCAUCGUCGUAGAACAAGCCCG----------------UCUCAUCGUCGAAGAACAAGCCCG----------------UCUCAUCUUCGCAGAACAAGCCCGA---------------UCUCAUCGUCGUAGAACAAUCCCGAG--------------UCUCAUCGUCGUAGAACAAGCCCAAG-------------AUCUCAUCGUCGCAGAACAAGCCCGA-------------UUUCUCAUCGUCGUCGAACAAGCCCGA---------------UCUCAUCGUCGGAGAACAAGCCCGA--------------AUCUCAUCGUCGUAGAACCAGCCCGAG--------------UCUCAUCGUCGUAGAACAUGCCCG----------------UCUCAUCGUCGUAGAAGAAGCCCGAU--------------UCUCAUCGUCGUAGGACAAGCCG-----------------UCUCAUCGUCGUAGAACAACCCCGAG--------------UCUCAUCGUCGUAGAACAAGCUCGAGG----------AAUUCUCAUCGUCGUAGAACAAGCCCGA--------------AUCUCAUCGUCGUAGGACAAGCCCG---------------UUCUCAUCGUCGUAGAACAAGCC-----------------UACUCAUCGUCGUAGAACGAGCCCGA---------------UCUCAUCGUCUUAGAACAAACCCGA------------

1
2
1
1
1
1
1
1
1
2
1
2
2
1
2
2
2
1
2
2
2
2
1
1
2
2
2
2
2
1
1
2
2
2
1
2
2
2
1
2
0
2
1
0
1
2
2
0
1
2
1
2
1
1
2
1
1
2
1
2
2
1
1
2
2
0
2
2
Total

0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0

1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
2,228

Supplementary Table 3
Nagao et al.

Pair

1

2
3
4

5

antisense
Aub AGO3

22
8
4
3
1
1
1
1
1
1
1
0
0
0
0
0
6
4
2
1
15
2
1

1
1
1
78

Alignment

5' UUCCUCGGAAUCAAGGGCAACGAGU 3'
5' UUCCUCGGAAUCAAGGCCAACGAGU 3'
4
3' GUCGACCUAGUUAACCAAGGAGCCUU 5'
1
3' UCGACCUAGUUAACCAAGGAGCCUU 5'
3' GUCGACCUGGUUAACCAAGGAGCCUU 5'00
3' UCGACUUAGUUAACCAAGGAGCCUU 5'
2
3' UCGACCUAGUCAACCAAGGAGCCUU 5'
0
3' UCGACCUAUUUAACCAAGGAGCCUU 5'
0
3' GUCGACCUAGUCAACCAAGGAGCCUU 5'
0
3' UCGACCUAGGUAACCAAGGAGCCUU 5'
0
3' CGACCUAGUUGACCAAGGAGCCUU 5'
0
3' GUCGACUUAGUUAACCAAGGAGCCUU 5'
0 3' CCUCGACCUAGUUAACCAAGGAGCCUU 5'
22 3' CGUCGACCUAGUUAACCAAGGAGCCUU 5'
2 3' UCGUCGACCUAGUCAACCAAGGAGCCUU 5'
2 3' CGUCGACCUGGUUAACCAAGGAGCCUU 5'
2 3' CGUCGAUCUAGUUAACCAAGGAGCCUU 5'
1
3' GUCGACCUAGAUAACCAAGGAGCCUU 5'
5' UGGGCCUGGAGUACUUCAGCCAGA 3'
0
3' GUGCAAGUUGGUCUACCCGGACCU 5'
1
3' UGUGCAAGUUGGUCUACCCGGACCU 5'0
3' CUGUGCAAGUUGGUCUACCCGGACCU 5'
5' UCGACAGUUCCUCGGGCUUGUUCUAC 3'0
3' GGACUUCGGCCACAAGCUGUCAAG 5'
5' UGUUCUUCUAGGGAUGGCGUGAA 3'
0
3' CAGUUCGCGAAGUUACAAGAAGAU 5'
0
3' UCAGUUCGCGAAGUUACAAGAAGAU 5'
0
3' UCAGUUCGCGAACUUACAAGAAGAU 5'
5' UUCAACCAGAUGGGCCUGGAGUACUUC 3'
5' UUCAACCAGAUGGGCCUGGAGUA 3'
1
3' UGAAAGUCCUGUGCAAGUUGGUCU 5'
0
3' GAAAGUCCUGUGCAAGUUGGUCU 5'
0
3' GAUUAAAGUCCUGUGCAAGUUGGUCU 5'38# Su(Ste) pair4 piRNA is highlighted with green underline.

sense
Aub AGO3
4
1
0
1

0

3

0

3

0

1

0
0

1
1

4

11

Supplementary Table 4
Nagao et al.

AT-chX-1 (common)
Alignment---UGUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGGG------AUGUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGGCC------UGUUUCAUCGUUAGACGGCUCGGGU------UGUUUCAUCGUUAGACGGCUCGG--------UGUUUCAUCGUUAGACGGCUCGGGCG-----UGUUUCAUCGUUAGACGACUCGGGC------UGUUUCAUCUUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGGC-------UGUUUCAUCGUUAGACGGCUCGGGA------UGUUUCAUCGUUAGACGGCUCGGGCC-----UGUUUCAUCGUUAGACGGCUCGGA-------UUUUUCAUCGUUAGACGGCUCGGGC------UGUUCCAUCGUUAGACGGCUCGGGC------UGUCUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAUACGGCUCGGGC----UCUGUUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGGUU----GUGUUUCAUCGUUAGACGGCUCGGGC-----AUGUUUCAUCGUUAGACGGCUCGGG-------UGCUUCAUCGUUAGACGGCUCGGGC----UCUGUUUCAUCGUUAGACGGCUCGGGC------CGUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGUCUCGGGC------UGUUUCAUCGUUAGACGACUCGGG--------GUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGGGCA-----UGUUUCAUCGCUAGACGGCUCGGGC-------UUUUCAUCGUUAGACGGCUCGGGC-------UGUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUUGUUAGACGGCUCGGGC-----CUGUUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGGUC------UGUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGGCGGCUCGGGC------UGUUACAUCGUUAGACGGCUCGGGC------UGUUUCGUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGACUCGGGCG-----UGUUUCAUCGUUAGACGGCUCGGGAA-----UGUUUCAUCGUCAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCACGGGC------UGUUUCAUCGUUAGACGGCUCGUGC------UGUUUCAUCGUUAGACGGCCCGGGC------UGUUUCAUCGUUAGACGGCUCUGG-------UGUUUCAUCGUUAGACAGCUCGGGC------UGUUUCAUCGUUGGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCG---------UGUCUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGGG------CGUUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCUGGC------UGUUUCAUCGUUAGACGGCUCGGUC------UGUUUCAUCGUUAGACGGCUCAGGC-----CUGUUUCAUCGUUAGACGGCUCGGGC------UAUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGGGGC-----UGUUUCAUCGUUAGGCGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGAC------UGGUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUGGGC-------UGUUCCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGCU------UGUUUCAUCGUUAGACCGCUCGGGC------UGUUUCAUCGUUAAACGGCUCGGGC------UGCUUCAUCGUUAGACGGCUCGGG-----

Mismatches
0
0
1
1
1
0
0
1
1
1
1
1
1
1
1
1
1
0
2
1
1
1
0
1
1
1
0
1
1
1
2
1
0
2
2
1
1
1
1
2
1
1
1
1
1
1
1
0
1
1
1
1
1
1
0
1
2
1
1
1
2
1
2
1
1
1

AGO3
2,642
875
6
11
39
308
693
15
7
11
5
1
5
2
4
12
1
1
1
4
2
6
1
7
1
1
2
13
2
2
4
3
2
24
3
3
5
4
3
1
1
4
2
1
1
1
3
3
7
3
2
1
1
10
7
1
5
1
10
4
1
3
3
2
2
2

Aub
13,615
3,013
190
183
172
134
91
88
79
55
45
43
42
36
30
29
29
29
29
26
26
25
25
24
22
22
17
16
16
16
15
15
15
14
13
13
12
12
11
11
11
10
10
10
10
10
9
9
8
8
8
8
8
7
7
7
6
6
5
5
5
4
4
4
3
3

---UGUUUCAUCGUUAGACGCCUCGGGC------UGUUUCAUCGUUAGUCGGCUCGGG-------UGUAUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGGGCGU----UGUUUCAUCGUUAGACGGCUCGGU------AUGUUUCAUCGUUAGACGGCUCGG--------UGUUUCACCGUUAGACGGCUCGGGC------UGUUUCUUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGCGC------UGUUUCAUCGUUAGACGGCUCGGGUG-----AGUUUCAUCGUUAGACGGCUCGGG-------GGUUUCAUCGUUAGACGGCUCGGGC-----AUGUUUCAUCGUUAGACGGCUCGGGCG---

1
1
1
1
1
1
1
1
1
1
1
1
1

1
1
1
35
9
2
2
1
1
1
1
1
1
4,870

Mismatches
0
2
0
1
1
1
2
2
2
2
2
1
1
2
2
1
1
1
1
1
1
2
1
1
1
1
1
2
1
1
1
1
0
1
1
2
2
1
1
1
1
1
1
1
1
Total

AGO3
175
43
21
10
7
7
5
5
4
4
3
3
3
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
327

Total

3
2
2
1
1
1
1
1
1
1
1
1
1
18,500AT-chX-1 (AGO3 unique)
Alignment---UGUUUCAUCGUUAGACGGCUCGGGCGG----UGUUUCAUCGUUAGACGGCUCGGGUCG----UGUUUCAUCGUUAGACGGCUCGGGCGGA---UGUUUCAUCGUUAGACGACUCGGGCGG----UGUUCCAUCGUUAGACGGCUCGGGCGG----UGUUUCAUCGUUAGACGGCUCGGGCGC---AUGAUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGACUCGGGCGU----UGUUUCAUCGUUAGACGGCUCGGGCAU-----UGUUCAUCGUUAGACGGCUCGGGCG-----UGUAUCAUCGUUAGACGGCUCGGC-------UGCUUCAUCGUUAGACGGCUCGGGCG-----UGUUUCAUCGCUAGACGGCUCGGGCGG----UGUUUCAUCGUUAGACGGCUCGGCG------UGCUUCAUCGUUAGACGGCUCGGCC------UGUUUCGUCGUUAGACGGCUCGG--------UGUUUCAUCGUUAGACGGCUCGGGCGA----UGUUUCAUCGUUAGACGGCUCGU--------UAUUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGAUGGCUCGGGCG-----UGUUUCAUCGUUAGACGUCUCGGGCG-----UGUUUCAUCGUUAGACUACUCGGGC------UGUUUCAUCGAUAGACGGCUCGGG-------UGUUUCAUCGUCAGACGGCUCGG--------UGUUUCAUCGUUAUACGGCUCGGGCG-----UGUUUCAUCGUUAGACGGCUCGGACG-----UGUUUCAUCGUUAGACGGCUCGUGCG-----UGUUUCAUCGUUAGGCGACUCGGG-------UGUUUCAUCGUUAGACGGCUCGGGAG-----UGUUUCAUCGUUAGCCGGCUCGGGCG-----UGUUUCAUCGUUAGACGGCUCAG--------UAUUUCAUCGUUAGACGGCUCGGGCG----CUGUUUCAUCGUUAGACGGCUCGGGCGG----UGUCUCAUCGUUAGACGGCUCGGGCG-----UGAUUCAUCGUUAGACGGCUCGGGCG-----UGUUUCAUCGUUAGACGGCUCGGGCAA----UAUUUCAUCGUUAGACGGCUCGGC-------UGUUUCAUCGUUAGACGGCCCGGG-------UGUUUCAUCGUUAGACCGCUCGGGCG-----UGAUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCCCGGGCG-----UGUUUCAUCGUUAGGCGGCUCGG--------UGUUUCAUCGUUAGGCGGCUCGGGCG-----UGUUUCAUCGUUAGACGGCUUGGG-------UGUUUCAUCGUUAGACGGCGCGGG-----

Aub
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0

AT-chX-1 (Aub unique)
Alignment---UGUUUCAUCGUUAGACGGCUGGGGC------UGUUUCAUCGUUAGACGGCUAGGGC------UGUUUCAUCUUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUUGGGC-----AUGUUUCAUCGUUAGACGGCUCGGGCC-----UGUUUCAUCGUUAGACGUCUCGGG-------UGUUUCAUCGUUAGAUGGCUCGGGC--------UCUCAUCGUUAGACGGCUCGGG-------UCUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACUGCUCGGGC----UCUGUUUCAUCGUUAGACGGCUCGG--------UGUUUCAUCGUUAGACGGCUCGGGCU------GUUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGUUCGGGC-------UUUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCCGGC------UGUUUCAUCGUUAGACUGCUCGGG-------UUUCUCAUCGUUAGACGGCUCGGGC--------UCUCAUCGUUAGACGGCUCGGGC------UGGUUCAUCGUUAGACGGCUCGGG---------UUUCAUCGUUAGACGGCUCGGG-------UGUUUUAUCGUUAGACGGCUCGGGC------UGUUACAUCGUUAGACGGCUCGGG-------UGUUUCAUCCUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGA--------UGUUUCAUAGUUAGACGGCUCGGGC------UGUUUCAUCGUCAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGCCCG----UGUUUCAUCGUUAGACGGCUGGC--------UGUUUCACCGUUAGACGGCUCGGG-------CGUUUCAUCGUUAGACGGCUCGGCC------UGUUUCAUCGUUAUACGGCUCGGC-------UCUUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUUGACGGCUCGGGC------UGUUUAAUCGUUAGACGGCUCGGG-------AUUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACAGCUCGGG---------UUUCAUCGUUAGACGGCUCGGGC------UGUUUAAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGACUCGGGCU-----UGUUUCAUCAUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCACGGG-------UGUUUCAUCGUUAGACGGCUCGGGCCG----UGUUUCAUCGUUAGACGCCUCGGG-------CGUUUCAUCGUCAGACGGCUCGGGC--------UGUCAUCGUUAGACGGCUCGGGC------UGCUUCAUCGUUAGACGGCUCGCGC------UGUUUCAUCGUUAGACGACUCUGGC-----GUGUUUCAUCGUUAGACGGCUCGGGU------UGAUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUAGGG-------UGUUUCAUCGUUAGAUGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGCCC-----UGUUUCAUCGUUAGACGGCUCGAGC----AAUGUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCCGCC------UUUUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGGUA-----UGUUUCAUCGUUACACGGCUCGGG-------UGUCUCAUCGUUAUACGGCUCGGGC-----AUGUUUCAUCGUUAUACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCGGUCC-----UGUUUCAUAGUUAGACGGCUCGGCC------UGUUUCAUCGUUAGACGGCUCGAA-------UGUUUCAUAGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACUGCUCGGCC------UGUUUCAUCGUUAGACGGCUCGUG-------UGUUUCAUCGUUAUACUGCUCGGGC----

Mismatches
AGO3
1 0
1 0
1 0
1 0
2 0
1 0
1 0
1 0
1 0
1 0
0 0
1 0
0 0
1 0
1 0
1 0
1 0
2 0
1 0
1 0
0 0
1 0
1 0
1 0
1 0
1 0
1 0
2 0
2 0
1 0
2 0
2 0
1 0
1 0
1 0
2 0
1 0
0 0
1 0
2 0
1 0
1 0
1 0
1 0
2 0
1 0
2 0
2 0
2 0
1 0
1 0
1 0
2 0
1 0
2 0
2 0
1 0
2 0
1 0
2 0
2 0
2 0
2 0
2 0
1 0
2 0
1 0
2 0

Aub
35
33
21
19
19
19
18
15
15
14
13
12
12
12
11
10
10
9
9
8
7
6
6
6
6
6
6
5
5
5
4
4
4
4
4
4
4
4
4
4
4
4
4
3
3
3
3
3
3
3
2
2
2
2
2
2
2
2
2
2
2
2
2
2
1
1
1
1

---UGUUUCAUCGUUAGACGGCUCGGCCG-----UGUUUCAUCGUUAGACGGCUCGGGCCUA---UGUUUCAUCGUAAGACGGCUCGGGC-----CUGUUUCAUCGUUAGACGGCUCCGGCC-----UGUUUCAUCGUUAAACGGCUCGGGA------UGUCUCAUCGUUAGACGACUCGGGC------UGUGUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGGGCUC------UCUCAUCGUUAGACGGCUCGG--------UGUUUCAUCGUUAGACUGCUCGGC-------UGUUUCAUCGUUAGACGGCUCGGCCGAAA---UGUUUCAUCGCUAGACGGCUCGG--------UGUUUCAUCGUUAGACGUCUCGUGC----AAUGUUUCAUCGUUAGACGGCUCGGG------AUGUUUCAUCGUUAGACGGCUCGGGCU-----CGUUUCAUCGUUAGACUGCUCGGG-------UGUUUCAUCGUUAGACGGCUCGCC-------UGUUUCAACGUUAGACGGCUCGGGC------UGUUUCAUCGUUAUACGGCUCGG--------UGUUUCAUCGUUAGACGGCUCCAG------GUGUUUCAUCGUUAGACGGCACGGGC------UGUUUCAUCUUUAGACGGCUCGGCC------UGUUUCAUCGUUAGACGGCUCAGG---------UCUCAUCGUUAUACGGCUCGGGC------AGUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGCUAGACGGCUCGGG-------UGUUUCAUCGUUAGAAGGCUCGGGC----UCUGUUUCAUCGUUAUACGGCUCGGGC------UGUGUCAUCGUUAGACGGCUCGGGC---UACUGUUUCAUCGUUAGACGGCUCGGG------GUGUUUCAUCGUUAGACGGCUCGGGCU-----UGUUUCAUCGUUAGGCGGCUCGGGCCG---CUGUUUCAUCGUUAGGCGGCUCGGG------AUGGUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACUUCUCGGGC-----CUGUUUCAUCGUUAGACGGCUCCGG-------UGUUUCAUCGUUAGUCGGCUCGGGC------UGUUUCAUCGUUAGACGGCCCCGGC------UGUUUCGUCUUUAGACGGCUCGGGC------UUUUUCAUCGUUAGACGGCUCUGGC------UGUCUCAUCGUUAGACGGCUCGG--------UGUUUCAUCGUUAGACGGCUCGGGGCG----UGUUUCAUUGUUAGACGGCUCGGGU------UGUUUCAUCGGUAGACGGCUCGGGC-----AUGUUUCAUCGUUAGACGACUCGGGC------UUUUUCAUCGUUAGACGACUCGGGC----UCUGCUUCAUCGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGACGGCUGGG--------UGUUUCAUCGUUAGACGGCUCGAG------AUGUUUCAUCGUUAGACGGCUCGGAC-----AAGUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGUUAGACGGCUCCGGG------UGUUUCAUCGUUAGACGGCACGGGCG-----UGUUUCAUCGUUAGACGGCUCGGCCGG----UGUUUCAUCGUUAUACGGCUCGGA-------CGUUUCAUCGUUAGACGGCUCGGGA------UGUUUCAUCUUUAGACGGCUCGGA-------UGUUUCAACGUUAGACGGCUCGGG-------UGUUUCAUCGUUAGAAGGCUCGGG-------UGUUUCAUCGUUACACGGCUCGG--------UUUUUCAUCGUUAGACGGCUCGGGCG-----UGUUUCAUCGUUAGACGGCUCGGGCCU---AUGUUUCAUCGUUAGACGGCUCGGGA----UCUGUUUCAUCGUUAGACGACUCGGG--------UUUUCAUCGUUAGACGGCUCGUGC------UGUUUCAUCGUUAAACGGCUCGGG-----GAUGUUUCAUCGUUAGACGGCUCGG---------GUUUCAUCGUUAGACGGCUCGGGUC---AGUGUUUCAUCGUUAGACGGCUCGGGC------UGUUUCAUCGAUAGACGGCUCGGGC----

1 0
2 0
1 0
2 0
2 0
2 0
1 0
2 0
1 0
2 0
2 0
1 0
2 0
2 0
2 0
2 0
2 0
1 0
1 0
2 0
2 0
2 0
1 0
2 0
1 0
1 0
1 0
1 0
1 0
2 0
2 0
2 0
1 0
2 0
2 0
1 0
1 0
2 0
2 0
2 0
1 0
2 0
2 0
1 0
2 0
2 0
1 0
1 0
1 0
2 0
2 0
2 0
1 0
1 0
2 0
2 0
2 0
1 0
1 0
1 0
1 0
2 0
2 0
1 0
2 0
1 0
2 0
2 0
2 0
1 0

1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1

---UGUUUCAUCGUUAGACGGAUCGGGC------AUUUUCAUCGUUAGACGGCUCGGG------CUGUUUCAUCGUUAGACGGCUAGGG-------UGUUUCAUCGUUAUACGGCUCGGGCA-----UGUUUCAGCGUUAGACGGCUCGGGC-----AUGUUUCAUCAUUAGACGGCUCGGGC------CGUUUCAUCGUUAGACGGCUCGUGC------UGUUUCAUCGUUAGACGUCUCGGC-------UGUUUCAUCGUUGGACGGCUCGG---------UUUUCAUCUUUAGACGGCUCGGGC-----AUGUUUCAUCGUUAGACGGCCCGGGC------UGUUUCAUCUUUACACGGCUCGGG----Total

1 0
2 0
1 0
2 0
1 0
2 0
2 0
2 0
1 0
2 0
2 0
2 0
0

1
1
1
1
1
1
1
1
1
1
1
1
559

Supplementary Table 5
Nagao et al.

qRT-PCR primer

DNA oligo (for Northern blot)