Photon Factory Activity Report 2016 #34 (2017) B

Publication List
1A
Y. Nishitani, J.-R. Simons, T. Kanai, H. Atomi and K. Miki
Crystal Structure of the TK2203 Protein from Thermococcus
Kodakarensis, a Putative Extradiol Dioxygenase
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 72, 427 (2016).
T. Akiyama, Y. Yamada, N. Takaya, S. Ito, Y. Sasaki and
S. Yajima
Crystal Structure of an IclR Homologue from Microbacteriumsp. Strain HM58-2
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 73, 16 (2017).
J. Kim, G. -O. Sambalkhundev, S. Kim, J. Son, A. Han,
S. -M. Ko, K. Y. Hwang and W. C. Lee
Processing of A-Form ssDNA by Cryptic RNase H FoldExonuclease PF2046
Arch. Biochem. Biophys. 606, 143 (2016).
L. -J. Yu, T. Kawakami, Y. Kimura and Z. -Y. Wang-Otomo
Structural Basis for the Unusual Qy Red-Shift and Enhanced
Thermostability of the LH1 Complex from Thermochromatium
Tepidum
Biochemistry 55, 6495 (2016).
S. Matsumoto, Y. Taguchi, A. Shimada, M. Igura and D. Kohda
Tethering an N-Glycosylation Sequon-Containing Peptide
Creates a Catalytically Competent Oligosaccharyltransferase
Complex
Biochemistry 56, 602 (2017).
M. Saotome, K. Saito, K. Onodera, H. Kurumizaka and
W. Kagawa
Structure of the Human DNA-Repair Protein RAD52 Containing
Surface Mutations
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 72, 598 (2016).
D. Liebschner, Y. Yamada, N. Matsugaki, M. Senda and
T. Senda
On the Influence of Crystal Size and Wavelength on Native SAD
Phasing
Acta Crystallogr. Sect. D-Biol. Crystallogr. 72, 728 (2016).
M. Ohki, K. Sugiyama, F. Kawai, H. Tanaka, Y. Nihei, S. Unzai,
M. Takebe, S. Matsunaga, S. Adachi, N. Shibayama, Z. Zhou,
R. Koyama, Y. Ikegaya, T. Takahashi, J. R. Tame, M. Iseki,
S. Y. Park
Structural Insight into Photoactivation of an Adenylate Cyclase
from a Photosynthetic Cyanobacterium
Proc. Natl. Acad. Sci. U. S. A. 113, 6659 (2016).

J. Ueda, A. Harada, T. Urahama, S. Machida, K. Maehara,
M. Hada, Y. Makino, J. Nogami, N. Horikoshi, A. Osakabe,
H. Taguchi, H. Tanaka, H. Tachiwana, T. Yao, M. Yamada,T. Iwamoto, A. Isotani, M. Ikawa, T. Tachibana, Y. Okada,H. Kimura, Y. Ohkawa, H. Kurumizaka and K. Yamagata
Testis-Specific Histone Variant H3t Gene Is Essential for Entry
into Spermatogenesis
Cell Reports 18, 593 (2017).
D. Fujita, Y. Ueda, S. Sato, H. Yokoyama, N. Mizuno,
T. Kumasaka and M. Fujita
Self-Assembly of M30L60 Icosidodecahedron
Chem 1, 91 (2016).
S. Waz, T. Nakamura, K. Hirata, Y. Koga-Ogawa, M. Chirifu,
T. Arimori, T. Tamada, S. Ikemizu, Y. Nakabeppu andY. Yamagata
Structural and Kinetic Studies of the Human Nudix Hydrolase
MTH1 Reveal the Mechanism for Its Broad Substrate Specificity
J. Biol. Chem. 292, 2785 (2017).
H. Hirano, J. Kobayashi and Y. Matsuura
Structures of the Karyopherins Kap121p and Kap60p Bound to
the Nuclear Pore-Targeting Domain of the SUMO Protease
Ulp1p
J. Mol. Biol. 429, 249 (2017).
M. Kubota, K. Takeuchi, S. Watanabe, S. Ohno, R. Matsuoka,
D. Kohda, S. Nakakita, H. Hiramatsu, Y. Suzuki, T. Nakayama,
T. Terada, K. Shimizu, N Shimizu, M. Shiroishi, Y. Yanagi and
T. Hashiguchi
Trisaccharide Containing 2,3-Linked Sialic Acid is a Receptor
for Mumps Virus
Microbiology 113, 11579 (2016).
D. Fujita, Y. Ueda, S. Sato, N. Mizuno, T. Kumasaka andM. Fujita
Self-Assembly of Tetravalent Goldberg Polyhedra from 144
Small Components
Nature 540, 563 (2016).
K. Suzuki, K. Mizutani, S. Maruyama, K. Shimono, F. L. Imai,
E. Muneyuki, Y. Kakinuma, Y. Ishizuka-Katsura, M. Shirouzu,
S. Yokoyama, I. Yamato and T. Murata
Crystal Structures of the ATP-Binding and ADP-Release Dwellsof the V1 Rotary Motor
Nat. Commun. 7, 13235 (2016).
S. Machida, S. Sekine, Y. Nishiyama, N. Horikoshi and
H. Kurumizaka
Structural and Biochemical Analyses of Monoubiquitinated
Human Histones H2B and H4Open Biology 6, 160090 (2016).
M. -Y. Cheung, X. Lic, R. Miao, Y. -H. Fong, K. -P. Li,
Y. -L. Yung, M. -H. Yu, K. -B. Wong, Z. Chen and H. -M. Lam
ATP Binding by the P-Loop NTPase OsYchF1 (anUnconventional G Protein) Contributes to Biotic but not Abiotic
Stress Responses
Proc. Natl. Acad. Sci. U.S.A. 113, 2648 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
A. Shimada, A. Yamaguchi and D. Kohda
Structural Basis for the Recognition of Two Consecutive
Mutually Interacting DPF Motifs by the SGIP1  Homology
DomainSci. Rep. 6, 19565 (2016).
Y. Aikawa, Y. Nishitani, H. Tomita, H. Atomi and K. Miki
Crystal Structure of Ketopantoate Reductase from Thermococcus
kodakarensis Complexed with NADP+
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 72, 369 (2016).
T. Yamamoto, Y. Tsunematsu, K. Hara, T. Suzuki, S. Kishimoto,
H. Kawagishi, H. Noguchi, H. Hashimoto, Y. Tang, K. Hotta andK. Watanabe
Oxidative Trans to Cis Isomerization of Olefins in Polyketide
Biosynthesis
Angew. Chem. Int. Ed. 55, 6207 (2016).
S. Fushinobu
Development of Aerobic Fermentation System using Edible
Waste Oil and Characteristics of Thermophilic Lipases
Life and Environment 61, 67 (2016).
Y. Sato, T. Kujirai, R. Arai, H. Asakawa, C. Ohtsuki,
N. Horikoshi, K. Yamagata, J. Ueda, T. Nagase, T. Haraguchi,
Y. Hiraoka, A. Kimura, H. Kurumizaka and H. Kimura
A Genetically Encoded Probe for Live-Cell Imaging of H4K20
Monomethylation
J. Mol. Biol. 428, 3885 (2016).
T. Sato, T. Kawasaki, S. Mine and H. Matsumura
Functional Role of the C-Terminal Amphipathic Helix 8 ofOlfactory Receptors and Other G Protein-Coupled Receptors
Int. J. Mol. Sci. 17, 1930 (2016).
Y. J. An, S. E. Rowland, F. T. Robb and S. -S. Cha
Purification, Crystallization, and Preliminary X-Ray
Crystallographic Analysis of the Group III Chaperonin from
Carboxydothermus Hydrogenoformans
Journal of Microbiology 54, 440 (2016).
M. Nagae, T. Hirata, K. Morita-Matsumoto, R. Theiler,
M. Fujita, T. Kinoshita and Y. Yamaguchi
3D Structure and Interaction of p24b and p24d Golgi Dynamics
Domains: Implication for p24 Complex Formation and Cargo
Transport.
J. Mol. Biol. 428, 4087 (2016).
N. Kuwabara, H. Manya, T. Yamada, H. Tateno, M. Kanagawa,
K. Kobayashi, K. Akasaka-Manya, Y. Hirose, M. Mizuno,
M. Ikeguchi, T. Toda, J. Hirabayashi, T. Senda, T. Endo and
R. KatoCarbohydrate-Binding Domain of the POMGnT1 Stem Region
Modulates O-Mannosylation Sites of a-Dystroglycan
Proc. Natl. Acad. Sci. U.S.A. 113, 9280 (2016).
Y. Hirato, M. Goto, M. Tokuhisa, M. Tanigawa andK. Nishimura
Crystallization and X-Ray Analysis of D-Threonine Aldolasefrom Chlamydomonas reinhardtii.
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 73, 86 (2017).

Z. Yan, A. Maruyama, T. Arakawa, S. Fushinobu and T. Wakagi
Crystal Structures of Archaeal 2-Oxoacid:Ferredoxin
Oxidoreductases from Sulfolobus tokodaii
Sci. Rep. 6, 33061 (2016).
S. Fudo, F. Qi, M. Nukaga and T. Hoshino
Influence of Precipitants on Molecular Arrangement and SpaceGroup of Protein Crystals
Cryst. Growth Des. 17, 534 (2017).
T. Yamaguchi, K. Akao, A. Takashina, S. Asamura,
M. Unno, R. K. Szilagyi and T. Kohzuma
X-Ray Crystallographic Evidence for the Simultaneous Presenceof Axial and Rhombic Sites in Cupredoxins: Atomic Resolution
X-Ray Crystal Structure Analysis of Pseudoazurin and DFT
Modelling
RSC Advances 6, 88358 (2016).
T. Matsuzawa, T. Jo, T. Uchiyama, J. A. Manninen, T. Arakawa,T. Arakawa, S. Fushinobu and K. Yaoi
Crystal Structure and Identification of a Key Amino Acid for
Glucose Tolerance, Substrate Specificity and Transglycosylation
Activity of Metagenomic -Glucosidase Td2F2
FEBS J. 283, 2340 (2016).
N. Horikoshi, Y. Arimura, H. Taguchi and H. Kurumizaka
Crystal Structures of Heterotypic Nucleosomes Containing
Histones H2A.Z and H2A
OPEN BIOLOGY 6, 160127 (2016).
2A
T. Onozuka, A. Chikamatsu, T. Katayama, Y. Hirose,
I. Harayama, D. Sekiba, E. Ikenaga, M. Minohara,
H. Kumigashira and T. Hasegawa
Reversible Changes in Resistance of Perovskite Nickelate
NdNiO3 Thin Films Induced by Fluorine Substitution
ACS Appl. Mater. Interfaces 9, 10882 (2017).
R. Yukawa, S. Yamamoto, K. Akikubo, K. Takeuchi, K. Ozawa,
H. Kumigashira andI. Matsuda
Tailoring Photovoltage Response at SrRuO3 /SrTiO3Heterostructures
Advanced Materials Interfaces 3, 1600527 (2016).
S. Backes, T. C. Rödel, F. Fortuna, E. Frantzeskakis, P. Le Fèvre,F. Bertran, M. Kobayashi, R. Yukawa, T. Mitsuhashi,
M. Kitamura, K. Horiba, H. Kumigashira, R. Saint-Martin,
A. Fouchet, B. Berini, Y. Dumont, A. J. Kim, F. Lechermann,
H. O. Jeschke, M. J. Rozenberg, R. Valentí, and A. F. SantanderSyro
Hubbard Band or Oxygen Vacancy States in the CorrelatedElectron Metal SrVO3
Phys. Rev. B 94, 241110 (2016).
T. Katayama, A. Chikamatsu, , K. Yamada1, K. Shigematsu,
T. Onozuka, M. Minohara, H. Kumigashira, E. Ikenaga and
T. Hasegawa
Epitaxial Growth and Electronic Structure of oxyhydride
SrVO2H thin films
J. Appl. Phys. 120, 085305 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
K. Watarai, K. Yoshimatsu, K. Horiba, H. Kumigashira,O. Sakata and A. Ohtomo
Epitaxial Synthesis and Physical Properties of Double-Perovskite
Oxide Sr2CoRuO6 Thin Films
J. Phys.: Condens. Matter. 28, 436005 (2016).
K. Hagiwara, Y. Takeno, Y. Ohtsubo, R. Yukawa,
M. Kobayashi, K. Horiba, H. Kumigashira, J. Rault, P. L. Fèvre,F. Bertran, A. Taleb-Ibrahimi, F. Iga and S. Kimura
Temperature Dependence of Yb Valence in the Sub-Surface of
YbB12(001)
J. Phys. Conf. Ser. 807, 012003 (2017).
K. Hagiwara, Y. Ohtsubo, M. Matsunami, S. Ideta, K. Tanaka,
H. Miyazaki, J. E. Rault, P. Le Fèvre, F. Bertran,
A. Taleb-Ibrahimi, R. Yukawa, M. Kobayashi, K. Horiba,
H. Kumigashira, K. Sumida, T. Okuda, F. Iga and S. Kimura
Surface Kondo Effect and Non-Trivial Metallic State of the
Kondo Insulator YbB12
Nat. Commun. 7, 12690 (2016).
S. Kawasaki, R. Takahashi, T. Yamamoto, M. Kobayashi,
H. Kumigashira, J. Yoshinobu, F. Komori, A. Kudo and
M. Lippmaa
Photoelectrochemical Water Splitting Enhanced by SelfAssembled Metal Nanopillars Embedded in an Oxide
Semiconductor PhotoelectrodeNat. Commun. 7, 11818 (2016).
T. Mitsuhashi, M. Minohara, R. Yukawa, M. Kitamura,
K. Horiba, M. Kobayashi and H. KumigashiraInfluence of k⊥ Broadening on ARPES Spectra of the (110) and(001) Surfaces of SrVO3 Films
Phys. Rev. B 94, 125148 (2016).
R. Yukawa, K. Ozawa, S. Yamamoto, H. Iwasawa, K. Shimada,E. F. Schwier, K. Yoshimatsu, H. Kumigashira, H. Namatame,
M. Taniguchi and I. Matsuda
Phonon-Dressed Two-Dimensional Carriers on the ZnO Surface
Phys. Rev. B 96, 165313 (2016).
B. Feng, O. Sugino, R. -Y. Liu, J. Zhang, R. Yukawa,M. Kawamura, T. Iimori, H. Kim, Y. Hasegawa, H. Li, L. Chen,
K. Wu, H. Kumigashira, F. Komori, T. -C. Chiang, S. Meng and
I. Matsuda
Dirac Fermions in Borophene
Phys. Rev. Lett. 118, 96401 (2017).
Y. Kobayashi, T. Koike, M. Okawa, R. Takayanagi, S. Takei,
M. Minohara, M. Kobayashi, K. Horiba, H. Kumigashira,A. Yasui, E. Ikenaga, T. Saitoh and K. Asai
Ce Core-Level Spectroscopy, and Magnetic and ElectricalTransport Properties of Lightly Ce-Doped YCoO3
J. Phys. Soc. Jpn. 85, 114704 (2016).
M. Minohara, M. Kitamura, H. Wadati, H. Nakao, R. Kumai,
Y. Murakami and H. KumigashiraThickness-Dependent Physical Properties of La1/3Sr2/3FeO3 Thin
Films Grown on SrTiO3 (001) and (111) Substrates
J. Appl. Phys. 120, 025303 (2016).

Former 2C
S. Toyoda and M. Oshima
Thickness-Dependent Change in the Valence Band Offset of the
SiO2/Si Interface Studied using Synchrotron-Radiation
Photoemission Spectroscopy
J. Appl. Phys. 120, 085306 (2016).
2B
T. Onozuka, A. Chikamatsu, T. Katayama, Y. Hirose,
I. Harayama, D. Sekiba, E. Ikenaga, M. Minohara,
H. Kumigashira and T. Hasegawa
Reversible Changes in Resistance of Perovskite Nickelate
NdNiO3 Thin Films Induced by Fluorine Substitution
ACS Appl. Mater. Interfaces 9, 10882 (2017).
S. Backes, T. C. Rödel, F. Fortuna, E. Frantzeskakis,
P. Le Fèvre, F. Bertran, M. Kobayashi, R. Yukawa,T. Mitsuhashi, M. Kitamura, K. Horiba, H. Kumigashira,R. Saint-Martin, A. Fouchet, B. Berini, Y. Dumont, A. J. Kim,
F. Lechermann, H. O. Jeschke, M. J. Rozenberg, R. Valentí, andA. F. Santander-Syro
Hubbard Band or Oxygen Vacancy States in the CorrelatedElectron Metal SrVO3
Phys. Rev. B 94, 241110 (2016).
T. Katayama, A. Chikamatsu, K. Yamada1, K. Shigematsu,
T. Onozuka, M. Minohara, H. Kumigashira, E. Ikenaga and
T. Hasegawa
Epitaxial Growth and Electronic Structure of oxyhydride
SrVO2H thin films
J. Appl. Phys. 120, 085305 (2016).
K. Watarai, K. Yoshimatsu, K. Horiba, H. Kumigashira,O. Sakata and A. Ohtomo
Epitaxial Synthesis and Physical Properties of Double-Perovskite
Oxide Sr2CoRuO6 Thin Films
J. Phys.: Condens. Matter. 28, 436005 (2016).
K. Hagiwara, Y. Takeno, Y. Ohtsubo, R. Yukawa,
M. Kobayashi, K. Horiba, H. Kumigashira, J. Rault,
P. L. Fèvre, F. Bertran, A. Taleb-Ibrahimi, F. Iga andS. Kimura
Temperature Dependence of Yb Valence in the Sub-Surface of
YbB12(001)
J. Phys. Conf. Ser. 807, 012003 (2017).
K. Hagiwara, Y. Ohtsubo, M. Matsunami, S. Ideta, K. Tanaka,
H. Miyazaki, J. E. Rault, P. Le Fèvre, F. Bertran,
A. Taleb-Ibrahimi, R. Yukawa, M. Kobayashi, K. Horiba,
H. Kumigashira, K. Sumida, T. Okuda, F. Iga and S. Kimura
Surface Kondo Effect and Non-Trivial Metallic State of the
Kondo Insulator YbB12
Nat. Commun. 7, 12690 (2016).
B. Feng, O. Sugino, R. -Y. Liu, J. Zhang, R. Yukawa,M. Kawamura, T. Iimori, H. Kim, Y. Hasegawa, H. Li, L. Chen,
K. Wu, H. Kumigashira, F. Komori, T. -C. Chiang,
S. Meng and I. Matsuda
Dirac Fermions in Borophene
Phys. Rev. Lett. 118, 96401 (2017).

Photon Factory Activity Report 2016 #34 (2017) B
3A
L. V. Lutsev, A. M. Korovin, V. E. Bursian, S. V. Gastev,
V. V. Fedorov, S. M. Suturin and N. S. Sokolov
Low-Relaxation Spin Waves in Laser-Molecular-Beam Epitaxy
Grown Nanosized Yttrium Iron Garnet Films
Appl. Phys. Lett. 108, 182402 (2016).

T. Nakamura, Y. Sugizaki, S. Ishida, K. Edamoto and K. Ozawa
Growth of Ultrathin Vanadium Oxide Films on Ag(100)Jpn. J. Appl. Phys. 55, 075501 (2016).
T. Watanabe, Y. Yamada, M. Sasaki, S. Sakai and Y. Yamauchi
Pt- and Au-Induced Monodirectional Nanowires on Ge(110)
Surf. Sci. 653, L71 (2016).

Y. Wakabayashi, H. Maeda, T. Kimura, O. Sakata, E. Sakai and
H. KumigashiraMicroscopic Observation of Degradation of LaNiO3 Ultrathin
Films Caused by Air Exposure
e-J. Surf. Sci. Nanotech. 14, 14 (2016).

K. Ozawa, M. Suzuki, R. Tochikubo, H. Kato, Y. Sugizaki,
K. Edamoto and K. Mase
Electron-Donor Dye Molecule on ZnO(1010), (0001), and(0001) Studied by Photoelectron Spectroscopy and X-ray
Absorption Spectroscopy
J. Phys. Chem. C. 120, 8653 (2016).

T. Kondo, T. Masuda, N. Aoki and K. Uosaki
Potential-Dependent Structures and Potential-Induced Structure
Changes at Pt(111) Single-Crystal Electrode/Sulfuric andPerchloric Acid Interfaces in the Potential Region between
Hydrogen Underpotential Deposition and Surface Oxide
Formation by In Situ Surface X-Ray Scattering
J. Phys. Chem. C 120, 16118 (2016).

3C
K. Hirano, Y. Yamashita, Y. Takahashi and H. Sugiyama
Development and Application of Variable-Magnification X-Ray
Bragg optics
AIP Conf. Proc. 1741, 040020 (2016).

H. Tamatsukuri, S. Aoki, S. Mitsuda, T. Nakajima, T. Nakamura,
T. Itabashi, S. Hosaka, S. Ito, Y. Yamasaki, H. Nakao, K. Prokes
and K. Kiefer
Uniaxial Pressure Effects on Spin-Lattice Coupled Phase
Transitions in a Geometrical Frustrated Magnet CuFeO2
Phys. Rev. B 94, 174402 (2016).
H. Nakajima, T. Usui, Y. Joly, M. Suzuki, Y. Wakabayashi,
T. Kimura and Y. Tanaka
Quadrupole Moments in Chiral Material DyFe3(BO3)4 Observed
by Resonant X-Ray Diffraction
Phys. Rev. B 93, 144116 (2016).
Y. Wakabayashi, D. Nakajima, Y. Ishiguro, K. Kimura,
T. Kimura, S. Tsutsui, A. Q. R. Baron, K. Hayashi, N. Happo,
S. Hosokawa, K. Ohwada and S. Nakatsuji
Chemical and Orbital Fluctuations in Ba3CuSb2O9
Phys. Rev. B 93, 245117 (2016).
S. Shimomura, C. Hayashi, N. Hanasaki, K. Ohnuma,
Y. Kobayashi, H. Nakao, M. Mizumaki and H. Onodera
Multiple Charge Density Wave Transitions in the
Antiferromagnets RNiC2 (R = Gd, Tb)
Phys. Rev. B 93, 165108 (2016).
E. Takagi, T. Aoyama, S. Hara, H. Sato, T. Kimura andY. Wakabayashi
Structural Deformation of the S = 1 Kagome-Lattice Compound
KV3Ge2O9
Phys. Rev. B 95, 104416 (2017).
3B
K. Ozawa and K. Mase
Evidence for Chemical Bond Formation at Rubber-Brass
Interface: Photoelectron Spectroscopy Study of Bonding
Interaction between Copper Sulfide and Model Molecules of
Natural Rubber
Surf. Sci. 654, 14 (2016).
Y. Enta, O. Morimoto, H. Kato and Y. Sakisaka
Angle-Resolved and Resonant Photoemission Study of the
Valence Bands of -La(0001) on W(110)World J. Condens. Matter Phys. 6, 17 (2016).

H. Yamaguchi, A. Kuramata and T. Masui
Slip System Analysis and X-Ray Topographic Study on -Ga2O3
Superlattices Microstruct. 99, 99 (2016).
H. Shimoyama, T. Oosawa, H. Watanabe, K. Suzuki, H. Sakurai
and M. Ito
First Observation of Non-resonant X-Ray Magnetic Diffraction
for Multilayers
Key Engineering Materials 698, 3 (2016).
4A
A. Ito, T. Inoue, T. Kawai, Y. Taki, S. Inoue, T. Shimizu andK. Shinohara
Difference in the Distributions between Ca Content and theDegree of Oxidative Damage in Human Hair Determined by
X-Ray Imaging
AIP Conf. Proc. 1696, 20021 (2016).
H. Kagi, D. A. Zedgenizov, H. Ohfuji and H. Ishibashi
Micro- and Nano-inclusions in a Superdeep Diamond from São
Luiz, Brazil
Geochemistry International 54, 834 (2016).
Y. Li, J. Zhao, Y. F. Li, X. Xu, B. Zhang, Y. Liu , L. Cui, B. Li,
Y. Gao and Z. Chai
Comparative Metalloproteomic Approaches for the Investigation
Proteins Involved in the Toxicity of Inorganic and Organic
Forms of Mercury in Rice (Oryza sativa L.) Roots
Metallomics 8, 663 (2016).
Y. Kageyama, T. Ikegami, Y. Kurokome and S. Takeda
Mechanism of Macroscopic Motion of Oleate Helical
Assemblies: Cooperative Deprotonation of Carboxyl Groups,
Triggered by Photoisomerization of Azobenzene Derivatives
Chem. - Eur. J. 22, 8669 (2016).
M. Kurisu, K. Sakata, C. Miyamoto, Y. Takaku, T. Iizuka and
Y. Takahashi
Variation of Iron Isotope Ratios in Anthropogenic Materials
Emitted through Combustion Processes
Chem. Lett. 45, 970 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
M. Kurisu, Y. Takahashi, T. Iizuka and M. Uematsu
Very Low Isotope Ratio of Iron in Fine Aerosols Related to Its
Contribution to the Surface Ocean
J. Geophys. Res. 121, 11119 (2016).
A. D. L. Chandani, A. Fukuda, J. K. Vij, Y. Takanishi and
A. IidaEffective Long-Range Interlayer Interactions and Electric-FieldInduced Subphases in Ferrielectric Liquid Crystals
Phys. Rev. E 93, 042707 (2016).
A. Iida, Y. Takanishi, A. Fukuda and J. K. Vij
Transitional Subphases Near the Electric-Field-Induced Phase
Transition to the Ferroelectric Phase in Se-Containing Chiral
Smectic Liquid Crystals Observed by Resonant X-Ray Scattering
Phys. Rev. E 94, 052703 (2016).
M. Kinebuchi, A. Matsuura, T. Kiyono, Y. Nomura andS. Kimura
Diagnostic Copper Imaging of Menkes Disease by Synchrotron
Radiation-Generated X-Ray Fluorescence Analysis
Sci. Rep. 6, 33247 (2016).
B. Mongkhonsin, W. Nakbanpote, A. Hokura,
N. Nuengchamnong and S. Maneechai
Phenolic Compounds Responding to Zinc and/or Cadmium
Treatments in Gynura Pseudochina(L.) DC. Extracts andBiomass
Plant Physiology and Biochemistry 109, 549 (2016).
G. Matsuba
Observation of Polymer Processing Process with Synchrotron
Radiation X-Ray BeamKinzoku 86, 692 (2016).
H. Kagi, D. A. Zedgenizov, H. Ohfuji and H. Ishibashi
Micro- and Nano-inclusions in a Superdeep Diamond from São
Luiz, Brazil
Geochemistry International 54, 834 (2016).
4B2
S. Ohi and A. Miyake
Phase Transitions between High- and Low-Temperature
Orthopyroxene in the Mg2Si2O6-Fe2Si2O6 System
Am. Mineral. 101, 1414 (2016).
S. Nishimura, Y. Suzuki, J. Lu, S. Torii, T. Kamiyama andA. Yamada
High-Temperature Neutron and X-Ray Diffraction Study of Fast
Sodium Transport in Alluaudite-Type Sodium Iron Sulfate
Chem. Mater. 28, 2393 (2016).
H. Hiramatsu, H. Hosono and T. Kamiya
Powder Structure Analysis of Vapochromic Quinolone
Antibacterial Agent Crystals
Cryst. Growth Des. 16, 4635 (2016).
I. Kagomiya, Y. Shimono and K. Kakimoto
Crystal structure and oxygen permeation properties of (La, Ba,
Sr)(Co, Ta)O3-δ
Solid State Ionics 285, 180 (2016).

G. Oyama, O. Pecher, K. J. Griffith, S. Nishimura,
R. Pigliapochi, C. P. Grey and A. Yamada
Sodium Intercalation Mechanism of 3.8 V Class Alluaudite
Sodium Iron Sulfate
Chem. Mater. 28, 5321 (2016).
4C
M. Minohara, M. Kitamura, H. Wadati, H. Nakao, R. Kumai,
Y. Murakami and H. KumigashiraThickness-Dependent Physical Properties of La1/3Sr2/3FeO3 Thin
Films Grown on SrTiO3 (001) and (111) Substrates
J. Appl. Phys. 120, 025303 (2016).
T. Kondo, T. Masuda, N. Aoki and K. Uosaki
Potential-Dependent Structures and Potential-Induced Structure
Changes at Pt(111) Single-Crystal Electrode/Sulfuric andPerchloric Acid Interfaces in the Potential Region between
Hydrogen Underpotential Deposition and Surface Oxide
Formation by In Situ Surface X-ray Scattering
J. Phys. Chem. C 120, 16118 (2016).
E. Takagi, T. Aoyama, S. Hara, H. Sato, T. Kimura andY. Wakabayashi
Structural Deformation of the S = 1 Kagome-Lattice Compound
KV3Ge2O9
Phys. Rev. B 95, 104416 (2017).
S. Kawaguchi, H. Ishibashi, S. Nishihara, S. Mori, J. Campo,
F. Porcher, O. Fabelo, K. Sugimoto, J. Kim, K. Kato, M. Takata,
H. Nakao, and Y. Kubota
Orthorhombic Distortion and Orbital Order in the Vanadium
Spinel FeV2O4
Phys. Rev. B 93, 024108 (2016).
Y. Otomo, K. Iwasa, K. Suyama and K. Tomiyasu
Chiral crystal-structure transformation of R3Co4Sn13 (R = La andCe)Phys. Rev. B 94, 075109 (2016).
5A
Y. Hirato, M. Goto, M. Tokuhisa, M. Tanigawa andK. Nishimura
Crystallization and X-Ray Analysis of D-Threonine Aldolasefrom Chlamydomonas reinhardtii.
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 73, 86 (2017).
Y. Nishigaya, Z. Fujimoto and T. Yamazaki
Optimized Inhibition Assays Reveal Different Inhibitory
Responses of Hydroxylamine Oxidoreductases from Beta- andGamma-Proteobacterial Ammonium-Oxidizing Bacteria
Biochem. Biophys. Res. Commun. 476, 127 (2016).
K. Takahashi, T. Tomita, T. Kuzuyama and M. Nishiyama
Determinants of Dual Substrate Specificity Revealed by the
Crystal Structure of Homoisocitrate Dehydrogenase from
Thermus Thermophilus in Complex with Homoisocitrate・
Mg2+・NADH.
Biochem. Biophys. Res. Commun. 478, 1688 (2016).
Y. Hikida, M. Kimoto, I. Hirao and S. Yokoyama
Crystal Structure of Deep Vent DNA Polymerase
Biochem. Biophys. Res. Commun. 483, 52 (2017).

Photon Factory Activity Report 2016 #34 (2017) B
J. J. Lim, Y. Lee, T. T. Ly, J. Y. Kang, J. -G. Lee, J. Y. An,
H. -S. Youn, K. R. Park, T. G. Kim, J. K. Yang, Y. Jun and
S. H. Eom
Structural Insights into the Interaction of p97 N-Terminus
Domain and VBM in Rhomboid Protease, RHBDL4Biochem. J. 473, 2863 (2016).
T. Shimizu, L. Yin, A. Yoshida, Y. Yokooji, S. Hachisuka,
T. Sato, T. Tomita, H. Nishida, H. Atomi, T. Kuzuyama andM. Nishiyama
Structure and Function of an Ancestral-Type -Decarboxylating
Dehydrogenase from Thermococcus Kodakarensis
Biochem. J. 474, 105 (2017).
P. A. Sigala, K. Morante, K. Tsumoto, J. M. M. Caaveiro and
D. E. Goldberg
In-Cell Enzymology To Probe His-Heme Ligation in Heme
Oxygenase Catalysis
Biochemistry 55, 4836 (2016).
S. Fudo, N. Yamamoto, M. Nukaga, T. Odagiri, M. Tashiro andT. Hoshino
Two Distinctive Binding Modes of Endonuclease Inhibitors to
the N-Terminal Region of Influenza Virus Polymerase Acidic
Subunit
Biochemistry 55, 2646 (2016).
Z. Yan, A. Maruyama, T. Arakawa, S. Fushinobu and T. Wakagi
Crystal Structures of Archaeal 2-Oxoacid:Ferredoxin
Oxidoreductases from Sulfolobus tokodaii
Sci. Rep. 6, 33061 (2016).
T. Matsuzawa, T. Jo, T. Uchiyama, J. A. Manninen, T. Arakawa,T. Arakawa, S. Fushinobu and K. Yaoi
Crystal Structure and Identification of a Key Amino Acid for
Glucose Tolerance, Substrate Specificity and Transglycosylation
Activity of Metagenomic b-Glucosidase Td2F2
FEBS J. 283, 2340 (2016).
S. Saijo, A. Nagai, S. Kinjo, R. Mashimo, M. Akimoto,
K. Kizawa, T. Yabe-Wada, N. Shimizu, H. Takahara and
M. UnnoMonomeric Form of Peptidylarginine Deiminase Type I
Revealed by X-Ray Crystallography and Small-Angle X-Ray
Scattering
J. Mol. Biol. 428, 3058 (2016).
D. Egawa, T. Itoh, A. Kato, S. Kataoka, Y. Anami andK. Yamamoto
SRC2-3 Binds to Vitamin D Receptor with High Sensitivity andStrong Affinity
Bioorg. Med. Chem. 25, 568 (2017).
S. Fudo, F. Qi, M. Nukaga and T. Hoshino
Influence of Precipitants on Molecular Arrangement and SpaceGroup of Protein Crystals
Cryst. Growth Des. 17, 534 (2017).
J. J. Lim, Y. Lee, S. Y. Yoon, T. T. Ly, J. Y. Kang, H. -S. Youn,
J. Y. An, J. -G. Lee, K. R. Park, T. G. Kim, J. K. Yang, Y. Jun
and S. H. Eom
Structural Insights into the Interaction of Human p97 N-Terminal
Domain and SHP Motif in Derlin-1 Rhomboid Pseudoprotease
FEBS Lett. 590, 4402 (2016).

S. Takahashi, K. Shimada, S. Nozawa, M. Goto, K. Abe and
Y. KeraPossible Role of a Histidine Residue in the Substrate Specificity
of Yeast D-Aspartate Oxidase
J. Biochem. 159, 371 (2016).
A. Yoshida, T. Tomita, H. Atomi, T. Kuzuyama andM. Nishiyama
Lysine Biosynthesis of Thermococcus kodakarensis with the
Capacity to Function as an Ornithine Biosynthetic System.
J. Biol. Chem. 291, 21630 (2016).
T. Shimizu, T. Tomita, T. Kuzuyama and M. Nishiyama
Crystal Structure of the LysY・LysW Complex from Thermus
thermophilus.
J. Biol. Chem. 291, 9948 (2016).
M. Nagae, T. Hirata, K. Morita-Matsumoto, R. Theiler,
M. Fujita, T. Kinoshita and Y. Yamaguchi
3D Structure and Interaction of p24b and p24d Golgi Dynamics
Domains: Implication for p24 Complex Formation and Cargo
Transport.
J. Mol. Biol. 428, 4087 (2016).
T. Oyama, S. Ishino, T. Shirai, T. Yamagami, M. Nagata,
H. Ogino, M. Kusunoki and Y. Ishino
Atomic Structure of an Archaeal GAN Suggests its Dual Roles
as an Exonuclease in DNA Repair and a CMG Component in
DNA Replication
Nucl. Acids Res. 44, 9505 (2016).
A. Miyanaga, S. Iwasawa, Y. Shinohara, F. Kudo and T. Eguchi
Structure-Based Analysis of the Molecular Interactions between
Acyltransferase and Acyl Carrier Protein in Vicenistatin
Biosynthesis
Proc. Natl. Acad. Sci. U.S.A. 113, 1802 (2016).
C. Okada, H. Wakabayashi, M. Kobayashi, A. Shinoda,
I. Tanaka and M. Yao
Crystal Structures of the UDP-Diacylglucosamine
Pyrophosphohydrase LpxH from Pseudomonas AeruginosaSci. Rep. 6, 32822 (2016).
C. -C. Lin, S. -C. Su, M. -Y. Su, P. -H. Liang, C. -C. Feng,
S. -H. Wu, C. -I Chang
Structural Insights into the Allosteric Operation of the Lon
AAA+ Protease
Structure 24, 667 (2016).
S. Kudo, JM. Caaveiro and K. Tsumoto
Adhesive Dimerization of Human P-Cadherin Catalyzed by a
Chaperone-like Mechanism
Structure 24, 1523 (2016).
C. Akatsu, K. Shinagawa, N. Numoto, Z. Liu, A. Konuskan
Ucar, M. Aslam, S. Phoon, T. Adachi, K. Furukawa, N. Ito and
T. Tsubata
CD72 Negatively Regulates B Lymphocyte Responses to the
Lupus-Related Endogenous Toll-Like Receptor 7 Ligand
Sm/RNP
The Journal of Experimental Medicine 213, 2691 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
T. Tomita, S. -Y. Kim, K. Teramoto, A. Meguro, T. Ozaki,
A. Yoshida, Y. Motoyoshi, N. Mori, K. Ishigami, H. Watanabe,
M. Nishiyama and T. Kuzuyama
Structural Insights into the CotB2-Catalyzed Cyclization ofGeranylgeranyl Diphosphate to the Diterpene Cyclooctat-9-en-7ol.
ACS Chem. Biol. 12, 1621 (2017).
A. Ohno, A. Ochi, N. Maita, T. Ueji, A. Bando, R. Nakao,
K. Hirasaka, T. Abe, S. Teshima-Kondo, H. Nemoto,Y. Okumura, A. Higashibata, S. Yano, H. Tochio and T. Nikawa
Structural Analysis of the TKB Domain of Ubiquitin Ligase
Cbl-b Complexed with its Small Inhibitory Peptide, Cblin
Arch. Biochem. Biophys. 594, 1 (2016).
T.Akiyama, M. Ishii, A. Takuwa, K. Oinuma, Y. Sasaki,
N.Takaya, S. Yajima
Structural Basis of the Substrate Recognition of Hydrazidase
Isolated from Microbacterium sp. Strain HM58-2, Which
Catalyzes Acylhydrazide Compounds as its Sole Carbon Source
Biochem. Biophys. Res. Commun. 482, 1007 (2017).
T. Yamaguchi, K. Akao, A. Takashina, S. Asamura, M. Unno,
R. K. Szilagyi and T. Kohzuma
X-Ray Crystallographic Evidence for the Simultaneous Presenceof Axial and Rhombic Sites in Cupredoxins: Atomic Resolution
X-Ray Crystal Structure Analysis of Pseudoazurin and DFT
Modelling
RSC Advances 6, 88358 (2016).
N. Kobayashi, N. Kimura and R. Arai
De Novo Proteins Created by Binary Pattern Strategy andSupramolecular Nanostructure Complexes Constructed fromProtein Nanobuiliding Blocks
Seibutsu-kogaku Kaishi 94, 485 (2016).
K. Takahashi, F. Nakanishi, T. Tomita, N. Akiyama, K. Lassak,
S. -V. Albers, T. Kuzuyama and M. Nishiyama
Characterization of Two b-Decarboxylating Dehydrogenases
from Sulfolobus Acidocaldarius
Extremophiles 20, 843 (2016).
C. Suzuki-Minakuchi, K. Kawazuma, J. Matsuzawa,D. Vasileva, Z. Fujimoto, T. Terada, K. Okada and H. Nojiri
Structural Similarities and Differences in H-NS Family Proteins
Revealed by the N-Terminal Structure of TurB in Pseudomonas
Putida KT2440
FEBS Lett. 590, 3583 (2016).
T. Mori, L. Zhang, T. Awakawa, S. Hoshino, M. Okada,
H. Morita and I. Abe
Manipulation of Prenylation Reactions by Structure-BasedEngineering of Bacterial Indolactam Prenyltransferases
Nat. Commun. 7, 10849 (2016).
T. Muramatsu, C. Takemoto, Y. -T. Kim, H. Wang, W. Nishii,
T. Terada, M. Shirouzua and S. Yokoyam
SARS-CoV 3CL Protease Cleaves its C-Terminal
Autoprocessing Site by Novel Subsite Cooperativity
Proc. Natl. Acad. Sci. U.S.A. 113, 12997 (2016).

M. -Y. Cheung, X. Lic, R. Miao, Y. -H. Fong, K. -P. Li,
Y. -L. Yung, M. -H. Yu, K. -B. Wong, Z. Chen and H. -M. Lam
ATP Binding by the P-Loop NTPase OsYchF1 (anUnconventional G Protein) Contributes to Biotic but not Abiotic
Stress Responses
Proc. Natl. Acad. Sci. U.S.A. 113, 2648 (2016).
S. Kimura, T. Suzuki, M. Chen, K. Kato, J. Yu, A. Nakamura,
I. Tanaka and M. Yao
Template-Dependent Nucleotide Addition in the Reverse (3'-5')Direction by Thg1-Like Protein
Science Advances 2, e1501397 (2016).
N. Adachi, T. Senda and M. Horikoshi
Uncovering Ancient Transcription Systems with a Novel
Evolutionary Indicator
Sci. Rep. 6, 27922 (2016).
H. Yoshida, A. Yoshihara, T. Ishii, K. Izumori and S. Kamitori
X-Ray Structures of the Pseudomonas Cichorii D-Tagatose 3Epimerase Mutant form C66S Recognizing Deoxy Sugars
Appl. Microbiol. Biotechnol. 100, 10403 (2016).
Y. Sato, T. Kujirai, R. Arai, H. Asakawa, C. Ohtsuki,
N. Horikoshi, K. Yamagata, J. Ueda, T. Nagase, T. Haraguchi,
Y. Hiraoka, A. Kimura, H. Kurumizaka and H. Kimura
A Genetically Encoded Probe for Live-Cell Imaging of H4K20
Monomethylation
J. Mol. Biol. 428, 3885 (2016).
A. Miyanaga, F. Kudo and T. Eguchi
Mechanisms of -Amino Acid Incorporation in Polyketide
Macrolactam Biosynthesis
Current Opinion in Chemical Biology 35, 58 (2016).
M. Hayashi, R. Suzuki, C. Colleoni, S. G. Ball, N. Fujita andE. Suzuki
Bound Substrate in the Structure of Cyanobacterial Branching
Enzyme Supports a New Mechanistic Model
J. Biol. Chem. 292, 5465 (2017).
6A
T. Oshima, M. Yoshizawa-Fujita, Y. Takeoka and M. Rikukawa
Use of a High-Performance Poly(p-phenylene)-Based Aromatic
Hydrocarbon Ionomer with Superacid Groups in Fuel Cells
under Low Humidity Conditions
ACS Omega 1, 939 (2016).
K. Henmi, H. Sato, G. Matsuba, H. Tsuji, K. Nishida, T. Kanaya,
K. Toyohara, A. Oda and K. Endou
Isothermal Crystallization Process of Poly(L-lactic acid)/Poly(Dlactic acid) Blends after Rapid Cooling from the MeltACS Omega 1, 476 (2016).
H. Okuda, H. Tanaka, T. Shiratake, M. Yamasaki and
Y. Kawamura
Development of Microstructures in Rapidly-Quenched
Mg85Y9Zn6 Alloy Ribbons during Heating at a Constant Speed
Examined by Simultaneous Small- and Wide Angle Scattering
Measurements
Acta Materialia 118, 95 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
H. Takagi, N. Igarashi, T. Mori, S. Saijo, H. Ohta, Y. Nagatani,
T. Kosuge and N. Shimizu
Upgrade of Small Angle X-Ray Scattering Beamline BL-6A at
the Photon Factory
AIP Conf. Proc. 1741, 030018 (2016).

T. Shinkai, K. Sugiyama, K. Ito and H. Yokoyama
Nanoporous Fabrication of Block Copolymers Via Carbon
Dioxide Swelling: Difference between CO2-Swollen andNanoporous Block Copolymers
Materials Science 100, 19 (2016).

H. Takeno and C. Sato
Effects of Molecular Mass of Polymer and Composition on theCompressive Properties of Hydrogels Composed of Laponite andSodium Polyacrylate
Applied Clay Science 123, 141 (2016).

M. Porta, M. T. Nguyen, T. Yonezawa, T. Tokunaga Y. Ishida,
H. Tsukamoto, Y. Shishino and Y. Hatakeyama
Titanium Oxide Nanoparticle Dispersions in a Liquid Monomer
and Solid Polymer Resins Prepared by Sputtering
Materials Science 40, 9337 (2016).

C. Ota, M. Ikeguchi, A. Tanaka and D. Hamada
Residual Structures in the Unfolded State of Starch-Binding
Domain of Glucoamylase Revealed by Near-UV Circular
Dichroism and Protein Engineering Techniques
Biochimica et Biophysica Acta-Proteins and Proteomics 1864,
1464 (2016).

G. Matsuba
Observation of Polymer Processing Process with Synchrotron
Radiation X-Ray BeamKinzoku 86, 692 (2016).

Y. Yuguchi, A. Hasegawa, A. M. Padoł, K. I. Draget andB. T. Stokke
Local Structure of Ca2+ Induced Hydrogels of AlginateOligoguluronateblends Determined by Small-Angle-X-Ray
Scattering
Carbohydrate Polymers 152, 532 (2016).
S. Utsumi, T. Nakamura, Y. Obata, N. Ohta and K. Takayama
Effect of Nerolidol and/or Levulinic Acid on the Thermotropic
Behavior of Lipid Lamellar Structures in the Stratum Corneum
Chemical and Pharmcaeutical Bulletin 64, 1692 (2016).
S. Yoshida, Y. Obata, Y. Onuki, S. Utsumi, N. Ohta,
H. Takahashi and K. Takayama
Molecular Interaction between Intercellular Lipids in the Stratum
Corneum and l-Menthol, as Analyzed by Synchrotron X-Ray
Diffraction
Chemical and Pharmcaeutical Bulletin 65, 134 (2017).
H. Takagi, Y. Sugino, S. Hara, K. Yamamoto and S. Shimada
Non-Equilibrium Disordered Micelles Observed after Melting of
Crystalline-Amorphous Alternating Lamellar Structure in
Crystalline-Amorphous Block Copolymers forming SphericalMorphology
Colloid Polym. Sci. 294, 993 (2016).
A. Miatmoko, K. Kawano, H. Yoda, E. Yonemochi and
Y. Hattori
Tumor Delivery of Liposomal Doxorubicin Prepared with PolyL-Glutamic Acid as a Drug-Trapping Agent
Journal of Liposom Reaearch 22, 99 (2016).
M. Hishida, Y. Kaneko, Y. Yamamura and K. Saito
Salt Effects on Lamellar Structure of Nonionic Surfactants
Journal of Solution Chemistry 45, 1612 (2016).
H. Usuda, M. Hishida, Y. Yamamura and K. Saito
Contrasting Effects of a Rigid Core and an Alkyl Chain in nCB
on the Phase Behavior of Lipid Bilayers
Langmuir 32, 5966 (2016).
S. Takahashi, N. L. Yamada, K. Ito and H. Yokoyama
Inclusion Complex of α-Cyclodextrin with Poly(Ethylene
Glycol) BrushMaterials Science 49, 6947 (2016).

S. Kutsumizu, I. Tokiwa, A. Kawafuchi, Y. Miwa,
Y. Yamamura and K. Saito
Stabilization of the Bicontinuous Cubic Phase in SiloxaneTerminated Mesogens, 1,2-Bis[4'-(n(Oligodimethylsiloxyl)Alkoxy)Benzoyl]Hydrazine
Phys. Chem. Chem. Phys. 18, 9013 (2016).
S. F. Shimobayashi, M. Hishida, T. Kurimura and M. Ichikawa
Nanoscale Hydration Dynamics of DNA-Lipid Blend Dry Films:
DNA-Size Dependency
Phys. Chem. Chem. Phys. 18, 31664 (2016).
X. Y. Jiang, A. Ryoki and K. Terao
Dimensional and Hydrodynamic Properties of Cellulose
Tris(Alkylcarbamate)s in Solution: Side Chain Dependent
Conformation in Tetrahydrofuran
Polymer 112, 152 (2017).
A. Onoda, H. Harada, T. Uematsu, S. Kuwabata, R. Yamanaka,
S. Sakurai and T. Hayashi
Enhanced Visible Light Response of a WO3 Photoelectrode withan Immobilized Fibrous Gold Nanoparticle Assembly using an
Amyloid-β Peptide
RSC Advances 7, 1089 (2017).
K. Yamamoto, E. Ito, Y. Mori, T. Miyazaki and N. L. Yamada
Water Content Near Surface of Poly(Dimethyl Siloxane)-coPoly(N,N-Dimethyl Acrylamide) Hydrogel Revealed by Neutron
Reflectivity Measurements
Kobunishi Ronbunshu 74, 36 (2017).
M. Deguchi, G. Kimura, N. Shimizu, N. Igarashi, S. Sasaki and
S. Sakurai
Crystallization Behavior of Poly(ethylene glycol) Under aTemperature Gradient
J. Soc. Mater. Sci. Jpn. 66, 12 (2017).
G. Matsuba, T. Kobayashi and Y. Chonan
Detailed Analysis of Aliphatic Polyurea Crystals
Journal of Fiber Science and Technology 73, 122 (2017).
6C
S. Toyoda, K. Fukuda, E. Itoh, H. Sugaya, M. Morita, A. Nakata,
Y. Uchimoto and E. Matsubara
Contactless Analysis of Electric Dipoles at High-k/SiO2
Interfaces by Surface-Charge-Switched Electron Spectroscopy
Appl. Phys. Lett 108, 211604 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
S. Toyoda, K. Fukuda, K. Horiba, M. Oshima, K. Kumagai,
Y. Kumagai, F. Oba, Y. Uchimoto and E. Matsubara
Ligancy-Driven Controlling of Covalency and Metallicity in a
Ruthenium Two-Dimensional System
Chem. Mater. 28, 5784 (2016).

M. Yoshida, S. Onishi, Y. Mitsutomi, F. Yamamoto,
M. Nagasaka, H. Yuzawa, N. Kosugi and H. Kondoh
Integration of Active Nickel Oxide Clusters by Amino Acids for
Water Oxidation
J. Phys. Chem. C 121, 255 (2017).

D. Takimoto, K. Fukuda, S. Miyasaka, T. Ishida, Y. Ayato,
D. Mochizuki, W. Shimizu and W. Sugimoto
Synthesis and Oxygen Electrocatalysis of Iridium Oxide
Nanosheets
Electrocatalysis 8, 144 (2017).

M. Sakamaki, K. Amemiya, I. Sveklo, P. Mazalski,
M. O. Liedke, J. Fassbender, Z. Kurant, A. Wawro and
A. Maziewski
Formation of Co Nanodisc with Enhanced Perpendicular
Magnetic Anisotropy Driven by Ga+ ion Irradiation on Pt/Co/Pt
Films
Phys. Rev. B 94, 174422 (2016).

M. Okube, J. Yoshizaki, T. Toyoda and S. Sasaki
Cation Distribution and Magnetic Structure of M-type
BaTiMnFe10O19 Examined by Synchrotron X-Ray and Neutron
StudiesJ. Appl. Crystallogr. 49, 1433 (2016).
A. Sato-Tomita, N. Shibayama, N. Happo, K. Kimura, T. Okabe,
T. Matsushita, S. -Y. Park, Y. C. Sasaki and K. Hayashi
Development of an X-Ray Fluorescence Holographic
Measurement System for Protein Crystals
Rev. Sci. Instrum. 87, 063707 (2016).
T. Yamamoto, K. Hayashi, N. Happo and S. Hosokawa
X-Ray Fluorescence Holography for a Ti-Nb Binary Alloy
Consisting of the Martensite, Austenite and Omega Phase
Z. Phys. Chemie-Int. 230, 509 (2016).
7A
Z. Wen, J. P. Hadorn, J. Okabayashi, H. Sukegawa, T. Ohkubo,
K. Inomata, S. Mitani and K. Hono
Interdiffusion in Epitaxial Ultrathin Co2FeAl/MgO
Heterostructures with Interface-Induced Perpendicular Magnetic
Anisotropy
Appl. Phys. Express 10, 013003 (2016).
D. Asakura, E. Hosono, M. Okubo, Y. Nanba, H. Zhou,
P. -A. Glans and J. Guo
Correlation between the O 2p Orbital and Redox Reaction in
LiMn0.6Fe0.4PO4 Nanowire Studied by Soft X-ray Absorption
ChemPhysChem 17, 4110 (2016).
T. Hayakawa, K. Egashira, M. Arakawa, T. Ito, S. Sarugaku,
K. Ando and A. Terasaki
X-Ray Absorption Spectroscopy of Ce2O3 + and Ce2O5 + near Ce
M-edgeJ. Phys. B 49, 075101 (2016).
S. Entani, M. Mizuguchi, H. Watanabe, L. Yu. Antipina,
P. B. Sorokin, P. V. Avramov, H. Naramotoa and S. Sakaia
Effective Fluorination of Single-Layer Graphene by HighEnergy Ion Irradiation Through a LiF Overlayer
RSC Advances 6, 68525 (2016).
K. Z. Suzuki, R. Ranjbar, J. Okabayashi, Y. Miura, A. Sugihara,
H. Tsuchiura and S. Mizukami
Perpendicular Magnetic Tunnel Junction with a Strained MnBased Nanolayer
Sci. Rep. 6, 30249 (2016).
T. Hayakawa, M. Arakawa and A. Terasaki,
Electronic State Measurements of Isolated Clusters by X-Ray
Optical Alliance 27, 42 (2016).

7C
K. Kubota, T. Asari, H. Yoshida, N. Yaabuuchi, H. Shiiba,
M. Nakayama and S. Komaba
Understanding the Structural Evolution and Redox Mechanismof a NaFeO2-NaCoO2 Solid Solution for Sodium-Ion Batteries
Adv. Funct. Mater. 26, 6047 (2016).
J. Long, D. Asakura, M. Okubo, A. Yamada, Y. Guari and
J. Larionova
Electrochemical Li-Ion Intercalation in OctacyanotungstateBridged Coordination Polymer with Evidence of Three Magnetic
Regimes
Inorg. Chem. 55, 7637 (2016).
S. Suzuki, T. Kato, H. Kawabata and M. Miyayama
Electrode Properties of Todorokite-Type Tunnel-Structured
Manganese Oxide for Calcium Secondary Batteries
Journal of New Materials for Electrochemical Systems 19, 51(2016).
J. Tsutsumi, S. Matsuoka, I. Osaka, R. Kumai and T. Hasegawa
Reduced Exchange Narrowing Caused by Gate-Induced Charge
Carriers in High-Mobility Donor-Acceptor Copolymers
Phys. Rev. B 95, 115306 (2017).
C. Santra, M. Pramanik, K. K. Bando, S. Maity and
B. Chowdhury
Gold Nanoparticles on Mesoporous Cerium-Tin Mixed Oxide for
Aerobic Oxidation of Benzyl Alcohol
Journal of Molecular Catalysis A: Chemical 418-419, 41 (2016).
8A
T. Kawamoto and T. Mori
Organic Superconductors Including Polar Molecules in an
Insulating Layer
J. Phys. Soc. Jpn. 71, 541 (2016).
H. Minemawari, M. Tanaka, S. Tsuzuki, S. Inoue, T. Yamada,R. Kumai, Y. Shimoi and T. Hasegawa
Enhanced Layered-Herringbone Packing due to Long Alkyl
Chain Substitution in Solution-Processable Organic
Semiconductors
Chem. Mater. 29, 1245 (2017).
J. Yoshida, A. Ueda, R. Kumai, Y. Murakami and H. Mori
Anion Substitution in Hydrogen-Bonded Organic Conductors:
the Chemical Pressure Effect on Hydrogen-Bond-MediatedPhase Transition
CrystEngComm 19, 367 (2017).

Photon Factory Activity Report 2016 #34 (2017) B
S. Tamura, N. Katayama, Y. Yamada, Y. Sugiyama,
K. Sugawara and H. Sawa
Various Arsenic Network Structures in 112-Type
Ca1-xLaxFe1-yPdyAs2 Revealed by Synchrotron X-Ray Diffraction
Experiments
Inorg. Chem. 56, 3030 (2017).

8B
K. Taniguchi, K. Narushima, H. Sagayama, W. Kosaka, N. Shitoand H. Miyasaka
In Situ Reversible Ionic Control for NonVolatile Magnetic
Phases in a Donor/Acceptor Metal-Organic Framework
Adv. Funct. Mater. 27, 1604990 (2017).
G. Oyama, O. Pecher, K. J. Griffith, S. Nishimura,
R. Pigliapochi, C. P. Grey and A. Yamada
Sodium Intercalation Mechanism of 3.8 V Class Alluaudite
Sodium Iron Sulfate
Chem. Mater. 28, 5321 (2016).
E. Saitoh, A. Kobayashi, M. Yoshida and M. Kato
Reduction in Crystal Size of Flexible Porous Coordination
Polymers Built from Luminescent Ru(II)-Metalloligands
Cryst. Growth Des. 16, 7051 (2016).
A. Watanabe, A. Kobayashi, E. Saitoh, Y. Nagao, S. Omagari,
T. Nakanishi, Y. Hasegawa, W. M. C. Sameera, M. Yoshida and
M. KatoDevelopment of Ion-Conductive and Vapoluminescent Porous
Coordination Polymers Composed of Ruthenium(II)Metalloligand
Inorg. Chem. 56, 3005 (2017).
M. Takachi, Y. Fukuzumi and Y. Moritomo
Concentration Dependence of Li+/Na+ Diffusion in Manganese
Hexacyanoferrates
Jpn. J. Appl. Phys. 55, 067101 (2016).
H. Kyakuno, M. Fukasawa, R. Ichimura, K. Matsuda, Y. Nakai,
Y. Miyata, T. Saito and Y. Maniwa
Diameter-Dependent Hydrophobicity in Carbon Nanotubes
J. Chem. Phys. 145, 064514 (2016).
B M de Boisse, J. Ming, S. Nishimura and A. Yamada
Alkaline Excess Strategy to NASICON-Type Compounds
towards Higher-Capacity Battery Electrodes
Journal of The Electrochemical Society 163, A1469 (2016).
T. Kawamoto, K. Kurata, T. Mori and R. Kumai
Charge Ordering Transitions of the New Organic Conductors d mand do-(BEDT-TTF)2TaF6Magnetochemistry 3, 42749 (2017).
S. Inoue, H. Minemawari, J. Tsutsumi, T. Hamai, S. Arai,
T. Yamada, S. Horiuchi, M. Tanaka, M. Yoneya, R. Kumai and
T. Hasegawa
Molecular Requirements for Printable Organic Semiconductors
in 7-Alkyl-2-Phenyl[1]Benzothieno[3,2-b][1] Benzothiophenes(Ph-BTBT-Cn’s)
MRS Advances 1, 2653 (2016).

B. M. de Boisse, G. Liu, J. Ma, S. Nishimura, S. -C. Chung,
H. Kiuchi, Y. Harada, J. Kikkawa, Y. Kobayashi, M. Okubo andA. YamadaIntermediate Honeycomb Ordering to Trigger Oxygen Redox
Chemistry in Layered Battery ElectrodeNat. Commun. 7, 11397 (2016).
K. Amaha, W. Kobayashi, S. Akama, K. Mitsuishi and
Y. Moritomo
Interrelation between Inhomogeneity and Cyclability in O3NaFe1/2Co1/2O2
Phys. Status Solidi RRL 11, 1600284 (2016).
M. Mito, K. Ogata, H. Goto, K. Tsuruta, K. Nakamura,
H. Deguchi, T. Horide, K. Matsumoto, T. Tajiri, H. Hara,
T. Ozaki, H. Takeya and Y. Takano
Uniaxial Strain Effects on the Superconducting Transition in Redoped Hg-1223 Cuprate Superconductors
Phys. Rev. B 95, 065403 (2017).
K. Kobayashi, J. Yamaura, S. Iimura, S. Maki, H. Sagayama,
R. Kumai, Y. Murakami, H. Takahashi, S. Matsuishi andH. Hosono
Pressure Effect on Iron-Based Superconductor LaFeAsO1-xHx:
Peculiar Response of 1111-Type Structure
Sci. Rep. 6, 39646 (2016).
H. Minemawari, M. Tanaka, S. Tsuzuki, S. Inoue, T. Yamada,R. Kumai, Y. Shimoi and T. Hasegawa
Enhanced Layered-Herringbone Packing due to Long Alkyl
Chain Substitution in Solution-Processable Organic
Semiconductors
Chem. Mater. 29, 1245 (2017).
9A
I. Nakai, R. Hisamatsu, Y. Li and M. Kurisu
Oxygen Vacancy and Dilute Ferromagnetism of ZnGa2O4 Dopedwith Co at the Octahedral Site
AIP Adv. 6, 055808 (2016).
H. Abe, Y. Niwa, M. Kimura, Y. Murakami, T. Yokoyama andH. Hosono
Gritty Surface Sample Holder Invented To Obtain Correct X-Ray
Absorption Fine Structure Spectra for Concentrated Materials by
Fluorescence Yield
Anal. Chem. 88, 3455 (2016).
H. Choudhary, J. Jia, S. Nishimura and K. Ebitani
Surfactant-Assisted Suzuki-Miyaura Coupling Reaction of
Unreactive Chlorobenzene over Hydrotalcite-Supported
Palladium Catalyst
Asian J. Org. Chem. 6, 274 (2017).
J. Tuteja, S. Nishimura and K. Ebitani
Change in Reactivity of Differently Capped AuPd Bimetallic
Nanoparticle Catalysts for Selective Oxidation of Aliphatic Diols
to Hydroxycarboxylic Acids in Basic Aqueous Solution
Catalysis Today 265, 231 (2016).
J. Maruyama, T. Shinagawa, A. Hayashida, Y. Matsuo,
H. Nishihara and T. Kyotani
Vanadium-Ion Redox Reactions in a Three-Dimensional
Network of Reduced Graphite Oxide
ChemElectroChem 3, 650 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
H. Kurosu, M. Yoshida, Y. Mitsutomi, S. Onishi, H. Abe andH. Kondoh
In Situ Observations of Oxygen Evolution Cocatalysts on
Photoelectrodes by X-ray Absorption Spectroscopy: Comparison
between Cobalt-Phosphate and Cobalt-Borate
Electrochemistry 84, 779 (2016).
T. Igarashi, Z. Zhang, T. Haioka, N. Iseki, N. Hiyoshi,
N. Sakaguchi, C. Kato, S. Nishihara, K. Inoue, A. Yamamoto,
H. Yoshida, N. Tsunoji, W. Ueda, T. Sano and M. Sadakane
Synthesis of -Keggin-Type Cobaltomolybdate-Based 3D
Framework Material and Characterization Using Atomic-Scale
HAADF-STEM and XANES
Inorg. Chem. 56, 2042 (2017).
M. Kimura, R. Murao, N. Ohta, K. Noami, Y. Uemura, Y. Niwa,
K. Kimijima, Y. Takeichi and H. Nitani
In situ Observation of Reduction Kinetics and 2D Mapping ofChemical State for Heterogeneous Reduction in Iron-Ore Sinters
J Phys. Conf. Ser. 712, 12077 (2016).
T. Ehiro, H. Misu, S. Nitta, Y. Baba, M. Katoh, Y. Katou,
W. Ninomiya and S. Sugiyama
Effects of Acidic-Basic Properties on Catalytic Activity for the
Oxidative Dehydrogenation of Isobutane on Calcium
Phosphates, Doped and Undoped with Chromium
J. Chem. Eng. Jpn. 50, 122 (2017).
T. Fujimori, M. Nakamura, M. Takaoka, K. Shiota andY. Kitajima
Synergetic Inhibition of Thermochemical Formation of
Chlorinated Aromatics by Sulfur and Nitrogen Derived fromThiourea: Multielement Characterizations
Journal of Hazardous Materials 311, 43 (2016).
S. Takakusagi, A. Kunimoto, N. Sirisit, H. Uehara, T. Ohba,
Y. Uemuara, T. Wada, H. Ariga, W. -J. Chun, Y. Iwasawa andK. Asakura
A New Indicator for Single Metal Dispersion on a TiO2(110)
Surface Premodified with a Mercapto Compound
J. Phys. Chem. C 120, 15785 (2016).
S. Hinokuma, Y. Kawabata, S. Matsuki, H. Shimanoe,
S. Kiritoshi and M. Machida
Local Structures and Catalytic Ammonia Combustion Properties
of Copper Oxides and Silver Supported on Aluminum Oxides
J. Phys. Chem. C 121, 4188 (2017).
M. Yoshida, S. Onishi, Y. Mitsutomi, F. Yamamoto,
M. Nagasaka, H. Yuzawa, N. Kosugi and H. Kondoh
Integration of Active Nickel Oxide Clusters by Amino Acids for
Water Oxidation
J. Phys. Chem. C 121, 255 (2017).
M. Kimura, R. Murao, N. Ohta, K. Noami, Y. Uemura, Y. Niwa,
K. Kimijima, Y. Takeichi and H. Nitani
In situ Observation of Reduction Kinetics and 2D Mapping ofChemical State for Heterogeneous Reduction in Iron-Ore Sinters
J. Phys. Conf. Ser. 712, 12077 (2016).
K. Asakura
XAFS for Ultra Dilute Systems
XAFS techniques for catalysts, nanomaterials, and surfaces 193(2016).

T. Masuda and K. Uosaki
In Situ Determination of Electronic Structure at Solid/LiquidInterfaces
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T. Masuda, Y. Sun, H. Fukumitsu, H. Uehara, S. Takakusagi,
W. -J. Chun, T. Kondo, K. Asakura and K. Uosaki
Various Active Metal Species Incorporated within Molecular
Layers on Si(111) Electrodes for Hydrogen Evolution and CO2
Reduction Reactions
J. Phys. Chem. C 120, 16200 (2016).
T. Ohkubo, T. Kusudo and Y. Kuroda
Asymmetric Hydration Structure Around Calcium Ion Restricted
in Micropores Fabricated in Activated Carbons
J. Phys.: Condens. Matter. 28, 464003 (2016).
T. Tobase, A. Yoshiasa, T. Hiratoko, H. Hongu, H. Isobe,
A. Nakatsuka, H. Arima and K. Sugiyama
Local Structures of Ca, Ti and Fe in Meteorite Fusion Crusts
J. Phys. Conf. Ser. 712, 012095 (2016).
9C
T. Tobase, A. Yoshiasa, T. Hiratoko, H. Hongu, H. Isobe,
A. Nakatsuka, H. Arima and K. Sugiyama
Local Structures of Ca, Ti and Fe in Meteorite Fusion Crusts
J. Phys. Conf. Ser. 712, 012095 (2016).
R. K. Singha, S. Ghosh, S. S. Acharyya, A. Yadav, A. Shukla,
T. Sasaki, A. M. Venezia, C. Pendem and R. Bal
Partial Oxidation of Methane to Synthesis Gas ver Pt
Nanoparticles Supported on Nanocrystalline CeO2 Catalyst
Appl. Catal. B 191, 165 (2016).
G. Mikami, F. Grosu, S. Kawamura, Y. Yoshida, G. Carja andY. Izumi
Harnessing Self-Supported Au Nanoparticles on Layered Double
Hydroxides Comprising Zn and Al for Enhanced Phenol
Decomposition under Solar Light
Appl. Catal. B 199, 260 (2016).
S. Ueno, T. Kawasaki, J. Okabayashi and T. Kitazawa
2D Spin-Crossover Coordination Polymer Fe(hexylnicotinate)2[Au(CN)2]2
Bull. Chem. Soc. Jpn. 89, 581 (2016).
H. Hayashi and H. Abe
An X-ray Spectroscopic Study of Co-Fe-Based Prussian Blue
Analog Gels
Bull. Chem. Soc. Jpn, 89. 1510 (2016).
M. Shirotori, S. Nishimura and K. Ebitani
Genesis of a Bi-Functional Acid-Base Site on a Cr-Supported
Layered Double Hydroxide Catalyst Surface for One-Pot
Synthesis of Furfurals from Xylose with a Solid Acid Catalyst
Catal. Sci. Technol. 6, 8200 (2016).
M. Komatsubara, A. Koga, M. Tanaka, R. Hagiwara and
M. Iwamoto
Three Pathways to Selective Catalytic Reduction of NO overPt/Nb-AlMCM-41 under H2 with Excess O2
Catal. Sci. Technol. 6, 7398 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
C. Siwaruk, H. Tomiga, M. Katagiri, Y. Yamamoto,S. Yamashita, M. Katayama and Y. Inada
Particle Size Effect of Redox Reactions for Co Species
Supported on Silica
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M. Harada and C. Cong
Microwave-Assisted Polyol Synthesis of Polymer-Protected
Monometallic Nanoparticles Prepared in Batch and ContinuousFlow Processing.
Ind. Eng. Chem. Res. 55, 5634 (2016).
J. Okabayashi, S. Ueno, T. Kawasaki and T. Kitazawa
Ligand 4-X Pyridine (X = Cl, Br, I) Dependence in HofmannType Spin Crossover Complexes: Fe(4-Xpyridine)2[Au(CN)2]2
Inorg. Chim. Acta 445, 17 (2016).
H. Abe, T. Nakayama, Y. Niwa, H. Nitani, H. Kondoh and
M. Nomura
Observation of Surface Reduction of NiO to Ni by SurfaceSensitive Total Reflection X-Ray Spectroscopy using KramersKronig Relations
Jpn. J. Appl. Phys. 55, 06240 (2016).
H. Hayashi and H. Abe
A Combined X-Ray Spectroscopic Study on the Multicolored
Pattern Formation in Gels Containing FeCl3 and K3[Fe(CN)6]
J. Anal. At. Spectrom. 31, 912 (2016).
H. Hayashi and H. Abe
X-Ray Spectroscopic Analysis of Liesegang Pattern in Mn-FeBased Prussian Blue Analogs
J. Anal. At. Spectrom. 31, 1658 (2016).
D. N. Lobo, K. R. Priolkar, A. Koide and S. Emura
Effect of Site Occupancy Disorder on Martensitic Properties ofMn2NiIn Type Alloys: X-Ray Absorption Fine Structure Study
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S. Kawamura, H. Zhang, M. Tamba, T. Kojima, M. Miyano,
Y. Yoshida, M. Yoshiba and Y. Izumi
Efficient Volcano-Type Dependence of Photocatalytic CO2
Conversion into Methane using Hydrogen at Reaction Pressures
up to 0.80 MPa
Journal of Catalysis 345, 39 (2017).
K. Kamimura, S. Hosokawa, N. Happo, H. Ikemoto, Y. Sutou,
S. Shindo, Y. Saito and J. Koike
XAFS Analysis on Amorphous and Crystalline New Phase
Change Material GeCu2Te3
J. Optoelectron. Adv. Mater. 18, 248 (2016).
H. Kobayashi, M. Hibino, Y. Kubota, Y. Ogasawara,
K. Yamaguchi, T. Kudo, S. Okuoka, H. Ono, K. Yonehara,
Y. Sumida and N. Mizuno
Cathode Performance of Co-Doped Li2O with Specific Capacity(400 mAh/g) Enhanced by Vinylene Carbonate
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C. -Y. Wang, T. Takeda, O. Melvin ten Kate, R. -J. Xie,
K. Takahashib and N. Hirosakib
Synthesis and Photoluminescence Properties of a Phase Pure
Green-Emitting Eu Doped JEM Sialon (LaSi6-zAl1+zN10-zOz, z~1)
Phosphor with a Large Red-Shift of Emission and Unusual
Thermal Quenching Behavior
J. Mater. Chem. C 4, 10358 (2016).

A. Yoko, M. Akizuki, N. Umezawa, T. Ohno and Y. Oshima
Growth of Ba1-xSrxZrO3 (0 ≤ x ≤ 1) Nanoparticles in Supercritical
Water
RSC Advances 6, 67525 (2016).
H. Konishi, T. Hirano, D. Takamatsu, A. Gunji, X. Feng,
S. Furutsuki, S. Takahashi and S. Terada
Potential Hysteresis between Charge and Discharge Reactions in
Li1.2Ni0.13Mn0.54Co0.13O2 for Lithium Ion Batteries
Solid State Ionics 300, 120 (2017).
K. Kamimura, K. Kimura, S. Hosokawa, N. Happo,
H. Ikemoto, Y. Sutou, S. Shindo, Y. Saito and J. Koike
XAFS Analysis of Crystal GeCu2Te3 Phase Change Material
Zeitschrift fur physikalische Chemie 230, 433 (2016).
K. Honda, S. Sasaki and S. Sakurai
Spontaneous Orientation of the Body-Centered-Cubic Lattice forSpherical Microdomains in a Block Copolymer Thin Film
Kobunishi Ronbunshu 74, 84 (2017).
M. Kimura, R. Murao, N. Ohta, K. Noami, Y. Uemura, Y. Niwa,
K. Kimijima, Y. Takeichi and H. Nitani
In situ Observation of Reduction Kinetics and 2D Mapping ofChemical State for Heterogeneous Reduction in Iron-Ore Sinters
J. Phys. Conf. Ser. 712, 12077 (2016).
I. Nakai, R. Hisamatsu, Y. Li and M. Kurisu
Oxygen Vacancy and Dilute Ferromagnetism of ZnGa2O4 Dopedwith Co at the Octahedral Site
AIP Adv. 6, 055808 (2016).
Y. Yoshida and Y. Izumi
Recent Advances in the Preferential Oxidation (PROX) of
Carbon Monoxide: Photocatalysis Versus Thermocatalysis,Noble Versus Inexpensive Metals, and Their Reaction
Mechanisms
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J. Tuteja, S. Nishimura and K. Ebitani
Change in Reactivity of Differently Capped AuPd Bimetallic
Nanoparticle Catalysts for Selective Oxidation of Aliphatic Diols
to Hydroxycarboxylic Acids in Basic Aqueous Solution
Catalysis Today 265, 231 (2016).
J. Maruyama, T. Shinagawa, A. Hayashida, Y. Matsuo,
H. Nishihara and T. Kyotani
Vanadium-Ion Redox Reactions in a Three-Dimensional
Network of Reduced Graphite Oxide
ChemElectroChem 3, 650 (2016).
D. Asakura, E. Hosono, M. Okubo, Y. Nanba, H. Zhou,
P. -A. Glans and J. Guo
Correlation between the O 2p Orbital and Redox Reaction in
LiMn0.6Fe0.4PO4 Nanowire Studied by Soft X-Ray Absorption
ChemPhysChem, 17 (2016) 4110.
M. Kimura, R. Murao, N. Ohta, K. Noami, Y. Uemura, Y. Niwa,
K. Kimijima, Y. Takeichi and H. Nitani
In situ Observation of Reduction Kinetics and 2D Mapping ofChemical State for Heterogeneous Reduction in Iron-Ore Sinters
J Phys. Conf. Ser. 712, 12077 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
M. Takachi, Y. Fukuzumi and Y. Moritomo
Concentration Dependence of Li+/Na+ Diffusion in Manganese
Hexacyanoferrates
Jpn. J. Appl. Phys. 55, 067101 (2016).
A. Yoshiasa, Y. Miyano, H. Isobe, K. Sugiyama, H. Arima,
A. Nakatsuka, K. Momma and R. Miyawaki
The Structure Refinement of Kӧttigite-Parasymplesite Solid
Solution: Unique Cation Site Occupancy and Chemical Bonding
Related to Water Molecules
J. Mineral. Petrol. Sci. 111, 363 (2016).
10A
A. Yoshiasa, T. Nakatani, A. Nakatsuka, M. Okube,
K. Sugiyama and T. Mashimo
High Temperature Single-Crystal X-Ray Diffraction Study ofTetragonal and Cubic Perovskite-Type PbTiO3 Phases
Acta Crystallogr. B-Struct. Biol. Cryst. Commun. B 72, 381(2016).
S. Jinnouchi, A. Yoshiasa, K. Sugiyama, R. Shimura, H. Araima,
K. Momma and R. Miyawaki
Crystal Structure Refinements of Legrandite, Adamite andParadamite: The Complex Structure and Characteristic Hydrogen
Bonding Network of Legrandite
J. Mineral. Petrol. Sci. 111, 35 (2016).
A. Yoshiasa, Y. Miyano, H. Isobe, K. Sugiyama, H. Arima,
A. Nakatsuka, K. Momma and R. Miyawaki
The Structure Refinement of Kӧttigite-Parasymplesite Solid
Solution: Unique Cation Site Occupancy and Chemical Bonding
Related to Water Molecules
J. Mineral. Petrol. Sci. 111, 363 (2016).
A Yoshiasa, T Nakatani, T Hiratoko, T Tobase, A Nakatsuka,
M Okube, H Arima and K Sugiyama
Temperature Dependence of Zr and Ti K-Edge XANES Spectra
for Para- and Ferro-Electric Perovskite-Type PbZrO3, PbTiO3
and BaTiO3Journal of Physics: Conference Series 712, 012121 (2016).
M. Okube, J. Yoshizaki, T. Toyoda and S. Sasaki
Cation Distribution and Magnetic Structure of M-type
BaTiMnFe10O19 Examined by Synchrotron X-Ray and Neutron
StudiesJ. Appl. Crystallogr. 49, 1433 (2016).
T. Tobase, A. Yoshiasa, T. Hiratoko, H. Hongu, H. Isobe,
A. Nakatsuka, H. Arima and K. Sugiyama
Local Structures of Ca, Ti and Fe in Meteorite Fusion Crusts
J. Phys. Conf. Ser. 712, 012095 (2016).
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D. H. Kwon, S. Kim, Y. O. Jung, K. H. Roh, L. Kim, B. W. Kim,
S. B. Hong, I. Y. Lee, J. H. Song, W. C. Lee, E. J. Choi,
K. Y. Hwang and H. K. SongThe 1:2 Complex between RavZ and LC3 Reveals a Mechanism
for Deconjugation of LC3 on the Phagophore Membrane
Autophagy 13, 70 (2016).
R. Inoue, T. Takata, N. Fujii, K. Ishii, S. Uchiyama, N. Sato,
Y. Oba, K. Wood, K. Kato, N. Fujii and M. Sugiyama
New Insight into the Dynamical System of  B-Crystallin
Oligomers
Sci. Rep. 6, 29208-1 (2016).

G. Matsuba
Recent and future development of 3D printers
J. Jpn. Soc. Dent. Mater. Dev. 35, 197 (2016).
K. Terao
Molecular Conformation of Polysaccharide Carbamate
Derivatives in Solution
Cellul. Commun. 23, 71 (2016).
Y. Yuguchi, B. M. Ly, B. V. Nguyen, T. T. Thanh Van and
T. T. T. Thuy
Study on Branched Structure-Physiological Activity Relationshipof Fucoidan
Chem. Lett. 45, 840 (2016).
T. Kusano, K. Akutsu, H. Iwase, T. Yoshimura and
M. Shibayama
Structural Study on Aggregation Behavior of Star-Type TrimericSurfactant in the Presence of Sodium Salicylate
Colloids and Surfaces A 497, 109 (2016).
T. Sato, T. Kawasaki, S. Mine and H. Matsumura
Functional Role of the C-Terminal Amphipathic Helix 8 ofOlfactory Receptors and Other G Protein-Coupled Receptors
Int. J. Mol. Sci. 17, 1930 (2016).
S. Fujii and Y. Yamamoto
Kinetics of the Orientation Transition in the Lyotropic Lamellar
Phase
Journal of Biorheology 30, 27 (2016).
Y. Anami, N. Shimizu, T. Ekimoto, D. Egawa, T. Itoh,
M. Ikeguchi and K. Yamamoto
Apo- and Antagonist-Binding Structures of Vitamin D Receptor
Ligand-Binding Domain Revealed by Hybrid Approach
Combining Small-Angle X-Ray Scattering and Molecular
Dynamics
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S. Goda, H. Sakuraba and T. Ohshima
Structural Analyses of the Inactive Recombinant Enzymes from
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K. Terao and A. Ryoki
Novel Synthesis of Rigid Cyclic Polymers and Their Molecular
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Kobunshi Ronbunshu 73, 505 (2016).
K. Morishima, K. Terao and T. Sato
Structural Analysis of Hydrophobe-Uptake Micelle of an
Amphiphilic Alternating Copolymer in Aqueous Solution
Langmuir 32, 7875 (2016).
H. Ohnogi, S. Sasaki and S. Sakurai
Evaluation of Grain Size by Small-Angle X-Ray Scattering for a
Block Copolymer Film in Which Cylindrical Microdomains Are
Perpendicularly Oriented
Macromol. Symp. 366, 35 (2016).
R. Kato, S. Nakagawa, H. Marubayashi and S. Nojima
Isothermal Crystallization Kinetics of Poly(-caprolactone)
Blocks Confined in Cylindrical Microdomain Structures as a
Function of Confinement Size and Molecular Weight
Macromolecules 49, 5955 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
M. Tokita, A. Sugimoto, C. Takahashi, S. Yoshihara,
R. van de Watering and S. Kang
Extended Chain Lamella Formation Characteristics of MainChain Smectic Liquid Crystalline Copolyesters Comprising
Different Length Units.
Macromolecules 49, 2718 (2016).
H. Miyase Y. Asai, A. Takano and Y. Matsushita
Kaleidoscopic Tiling Patterns with Large Unit Cells from ABC
StarShaped Terpolymer/Diblock Copolymer Blends with
Hydrogen Bonding Interaction
Macromolecules 50, 979 (2017).
R. Ishige, T. Masuda, Y. Kozaki, E. Fujiwara, T. Okada and
S. Ando
Precise Analysis of Thermal Volume Expansion of Crystal
Lattice for Fully Aromatic Crystalline Polyimides by X-Ray
Diffraction Method: Relationship between Molecular Structureand Linear/Volumetric Thermal Expansion
Macromolecules 50, 2112 (2017).
T. Tominaga, T. Yamada, S. Takata and N. Shimamoto
Multilevel Hierarchical Structures of Double-Network Polymers
in a Dried State
Polymer 108, 493 (2016).
K. Uramoto, R. Takahashi, K. Terao and T. Sato
Local and Global Conformations of Flower Micelles and Flower
Necklaces Formed by an Amphiphilic Alternating Copolymer in
Aqueous Solution
Polym. J. 48, 863 (2016).
K. Kuroiwa, Y. Koga, Y. Ishimaru, T. Nakashima, H. Hachisako
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Morphological Control of Hybrid Amphiphilic Poly(NIsopropylacrylamide)/Metal Cyanide Complexes
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S. Uchida, T. Murakami, T. Iwamura, R. Ishigea and S. Ando
Enhanced Thermal Conductivity in Immiscible Polyimide Blend
Composites with Needle-Shaped ZnO Particles
RSC Advances 7, 15492 (2017).
K. Yamamoto, T. Okamoto and I. Saito
Phase Separated Structure and Its Orientation Behavior ofPolystyrene-b-Partially Quaternized Poly(2-Vinylpyridine) Thin
Films Investigated by Grazing Incidence Small Angle X-ray
Scattering
J. Soc. Mater. Sci. Jpn. 66, 18 (2017).
A. Yamada, N. Shimizu, T. Hikima, M. Takata, T. Kobayashi
and H. Takahashi
Effect of Cholesterol on the Interaction of Cytochrome P450
Substrate Drug Chlorzoxazone with the Phosphatidylcholine
Bilayer
Biochemistry 55, 3888 (2016).
R. Abe, K. Nagoshi, T. Arai, S. Watanabe, Y. Sano,
H. Matsuura, H. Takagi, N. Shimizu, M. Koka and T. Sato
Microscopic Analyses of Complexes Formed in Adsorbent for
Mo and Zr Separation Chromatography
Nucl. Instr. Meth. Phys. Res. B 404, 173 (2017).

K. Honda, S. Sasaki and S. Sakurai
Spontaneous Orientation of the Body-Centered-Cubic Lattice forSpherical Microdomains in a Block Copolymer Thin Film
Kobunishi Ronbunshu 74, 84 (2017).
N. Kobayashi, N. Kimura and R. Arai
De Novo Proteins Created by Binary Pattern Strategy andSupramolecular Nanostructure Complexes Constructed fromProtein Nanobuiliding Blocks
Seibutsu-kogaku Kaishi 94, 485 (2016).
N. Shimizu, K. Yatabe, Y. Nagatani, S. Saijo, T. Kosuge andN. Igarashi
Software Development for Analysis of Small-angle X-Ray
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AIP Conf. Proc. 1741, 050017 (2016).
S. Saijo, A. Nagai, S. Kinjo, R. Mashimo, M. Akimoto,
K. Kizawa, T. Yabe-Wada, N. Shimizu, H. Takahara and
M. UnnoMonomeric Form of Peptidylarginine Deiminase Type I
Revealed by X-Ray Crystallography and Small-Angle X-Ray
Scattering
J. Mol. Biol. 428, 3058 (2016).
G. Matsuba
Observation of Polymer Processing Process with Synchrotron
Radiation X-Ray BeamKinzoku 86, 692 (2016).
11A
E. Jamsranjav, T. Shiina, K. Kuge, Y. Kinjo, Y. Nakamura,
K. Shinohara and A. Ito
Effect of Contrast Enhancement Prior to Iteration Procedure on
Image Correction for Soft X-Ray Projection Microscopy
AIP Conf. Proc. 1696, 20037 (2016).
W. B. K. Putri, P. V. Duong, W. N. Kang, T. Miyanaga,
D. -S. Yang and B. Kang
Close Relation between Mg-Mg Bonds and Tc of SiC BufferedMgB2 Tapes
J. Alloys and Compounds 665, 352 (2016).
H. Okuda, R. Sakohata, Y. Kitajima and Y. Tamenori
Realization of Two-Dimensional Anomalous Small-Angle
Scattering of Al Alloys at the K Absorption Edge of Al
J. Appl. Crystallogr. 49, 1803 (2016).
T. Fujimori, M. Nakamura, M. Takaoka, K. Shiota andY. Kitajima
Synergetic Inhibition of Thermochemical Formation of
Chlorinated Aromatics by Sulfur and Nitrogen Derived fromThiourea: Multielement Characterizations
Journal of Hazardous Materials 311, 43 (2016).
11B
H. Okuda, R. Sakohata, Y. Kitajima and Y. Tamenori
Realization of Two-Dimensional Anomalous Small-Angle
Scattering of Al Alloys at the K Absorption Edge of Al
J. Appl. Crystallogr. 49, 1803 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
K. Isegawa, T. Nagami, S. Jomori, M. Yoshida and H. Kondoh
In situ S-K XANES Study of Polymer Electrolyte Fuel cells:
Changes in the Chemical States of Sulfonic Groups Dependingon Humidity
Phys. Chem. Chem. Phys. 18, 25183 (2016).
A. Ito, T. Inoue, T. Kawai, Y. Taki, S. Inoue, T. Shimizu andK. Shinohara
Difference in the Distributions between Ca Content and theDegree of Oxidative Damage in Human Hair Determined by
X-Ray Imaging
AIP Conf. Proc. 1696, 20021 (2016).
T. Fujimori, M. Nakamura, M. Takaoka, K. Shiota andY. Kitajima
Synergetic Inhibition of Thermochemical Formation of
Chlorinated Aromatics by Sulfur and Nitrogen Derived fromThiourea: Multielement Characterizations
Journal of Hazardous Materials 311, 43 (2016).
M. Kubota, T. Sakurai, T. Miyadera, H. Nakao, T. Sugita andY. Yoshida
Domain Structure and Electronic State in P3HT:PCBM BlendThin Films by Soft X-Ray Resonant Scattering
J. Appl. Phys. 120, 165501 (2016).
S. Inoue, K. Hayashida, S.Katada, H. Nakajima, R. Nagino,
N. Anabuki, H. Tsunemi, T. Go Tsuru, T. Tanaka, H. Uchida,
M. Nobukawa, K. Kawabata Nobukawa, R. Washino, K. Mori,
E. Isoda, M. Sakata, T. Kohmura, K. Tamasawa, S. Tanno,
Y. Yoshino, T. Konno, S. Ueda, On behalf of ASTRO-H/SXI
team
Modeling the Spectral Response for the soft X-Ray Imager
Onboard the ASTRO-H Satellite
Nuclear Inst. and Methods in Physics Research Section A:
Accelerators, Spectrometers, Detectors and AssociatedEquipment 831, 415 (2016).
11D
H. Hara, G. Arai, Y. Kondo, T. -H. Dinh, P. Dunne,
G. O’Sullivan, T. Ejima, T. Hatano, W. Jiang, M. Nishikino,
A. Sasaki, A. Sunahara and T. Higashiguchi
Characteristics of the Soft X-Ray Emission from Laser-Produced
Highly Charged Platinum Plasmas
Appl. Phys. Express 9, 66201 (2016).
R. Lokasani, G. Arai, Y. Kondo, H. Hara, T. -H. Dinh, T. Ejima,
T. Hatano, W. Jiang, T. Makimura, B. Li, P. Dunne,
G. O’Sullivan, T. Higashiguchi and J. Limpouch
Soft X-Ray Emission from Molybdenum Plasmas Generated byDual Laser Pulses
Appl. Phys. Lett. 109, 194103 (2016).
T. H. Dinh, Y. Kondo, T. Tamura, Y. Ono, H. Hara, H. Oikawa,Y. Yamamoto, M. Ishino, M. Nishikino, T. Makimura, P. Dunne,
G. O’Sullivan, S. Ohta, K. Kitano, T. Ejima, T. Hatano and
T. Higashiguchi
Evaluation of a Flat-Field Grazing Incidence Spectrometer forHighly Charged ion Plasma Emission in Soft X-Ray Spectral
Region from 1 to 10 nm
Rev. Sci. Instrum. 87, 123106 (2016).

12C
K. Tokunaga, T. Uruga, K. Nitta, Y. Terada, O. Sekizawa,S. Kawagucci and Y.Takahashi
Application of Arsenic in Barite as a Redox Indicator for
Suboxic/Anoxic Redox Condition
Chemical Geology 447, 59 (2017).
W. R. Siah, H. O. Lintang,, M. Shamsuddi, H. Yoshida andL. Yuliati
Masking Effect of Copper Oxides PhotodePosited on Titanium
Dioxide: Exploring UV, Visible, and Solar Light Activity
Catal. Sci. Technol. 6, 5079 (2016).
F. Amano, B. Ohtani and H. Yoshida
Role of Doped Titanium Species in the Enhanced
Photoelectrochemical Properties of Iron Oxide Films:
Comparison between Water Oxidation and Iodide ion Oxidation
J. Electroanal. Chem. 766, 100 (2016).
Y. Tsuchiya, K. Takanashi, T. Nishinobo, A. Hokura,
M. Yonemura, T. Matsukawa, T. Ishigaki, K. Yamanaka, T. Ohta
and N.Yabuuchi
Layered NaxCrxTi1-xO2 as Bifunctional Electrode Materials for
Rechargeable Sodium Batteries
Chem. Mater. 28, 7006 (2016).
K. Iwashina, A. Iwase, S. Nozawa, S. Adachi and A. Kudo
Visible-Light-Responsive CuLi1/3Ti2/3O2 Powders Prepared by a
Molten CuCl Treatment of Li2TiO3 for Photocatalytic H2
Evolution and Z-Schematic Water Splitting
Chem. Mater. 28, 4677 (2016).
N. Yabuuchi, M. Nakayama, M. Takeuchi, S. Komaba,
Y. Hashimoto, T. Mukai, H. Shiiba, K. Sato, Y. Kobayashi,
A. Nakao, M. Yonemura, K. Yamanaka, K. Mitsuhara and
T. Ohta
Origin of Stabilization and Destabilization in Solid-State Redox
Reaction of Oxide Ions for Lithium-Ion BatteriesNat. Commun. 7, 1 (2016).
S. Kumakura, Y. Shirao, K. Kubota and S. Komaba
Preparation and Electrochemical Properties of Li2MoO3/C
Composites for Rechargeable Li-Ion Batteries
Electrochemistry/Electrochemistry 18, 28556 (2016).
T. Masuda and K. Uosaki
In Situ Determination of Electronic Structure at Solid/LiquidInterfaces
J. Electron Spectrosc. Relat. Phenom. 221, 88 (2017).
T. Masuda, Y. Sun, H. Fukumitsu, H. Uehara, S. Takakusagi,
W. -J. Chun, T. Kondo, K. Asakura and K. Uosaki
Various Active Metal Species Incorporated within Molecular
Layers on Si(111) Electrodes for Hydrogen Evolution and CO2
Reduction Reactions
J. Phys. Chem. C 120, 16200 (2016).
H. Asai, H. Nitani, F. Nishimura, S. Yonezawa and K. Nakane
Structural Analysis of Cellulose Acetate and Zirconium
Alkoxide Hybrid Fibres
RSC Advances 6, 45858 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
S. Ogawa, M. Katoh, C. Numako, K. Kitahara, S. Miyazaki and
T. SatoImmobilization of Antimony(III) in Oxic Soil using Combined
Application of Hydroxyapatite and Ferrihydrite
Water, Air, & Soil Pollution 227, 124 (2016).
T. Igarashi, Z. Zhang, T. Haioka, N. Iseki, N. Hiyoshi,
N. Sakaguchi, C. Kato, S. Nishihara, K. Inoue, A. Yamamoto,
H. Yoshida, N. Tsunoji, W. Ueda, T. Sano and M. Sadakane
Synthesis of -Keggin-Type Cobaltomolybdate-Based 3D
Framework Material and Characterization Using Atomic-Scale
HAADF-STEM and XANES
Inorg. Chem. 56, 2042 (2017).
S. Kawamura, H. Zhang, M. Tamba, T. Kojima, M. Miyano,
Y. Yoshida, M. Yoshiba and Y. Izumi
Efficient Volcano-Type Dependence of Photocatalytic CO2
Conversion into Methane using Hydrogen at Reaction Pressures
up to 0.80 MPa
Journal of Catalysis 345, 39 (2017).
M. Sakamaki, K. Amemiya, I. Sveklo, P. Mazalski,
M. O. Liedke, J. Fassbender, Z. Kurant, A. Wawro and
A. Maziewski
Formation of Co Nanodisc with Enhanced Perpendicular
Magnetic Anisotropy Driven by Ga+ ion Irradiation on Pt/Co/Pt
Films
Phys. Rev. B 94, 174422 (2016).
K. Kamimura, K. Kimura, S. Hosokawa, N. Happo,
H. Ikemoto, Y. Sutou, S. Shindo, Y. Saito and J. Koike
XAFS Analysis of Crystal GeCu2Te3 Phase Change Material
Zeitschrift fur physikalische Chemie 230, 433 (2016).
J. Maruyama, T. Shinagawa, A. Hayashida, Y. Matsuo,
H. Nishihara and T. Kyotani
Vanadium-Ion Redox Reactions in a Three-Dimensional
Network of Reduced Graphite Oxide
ChemElectroChem 3, 650 (2016).
K. Kamimura, S. Hosokawa, N. Happo, H. Ikemoto, Y. Sutou,
S. Shindo, Y. Saito and J. Koike
XAFS Analysis on Amorphous and Crystalline New Phase
Change Material GeCu2Te3
J. Optoelectron. Adv. Mater. 18, 248 (2016).
13A/B
T. G Gill, A. Fleurence, B. Warner, H. Prüser, R. Friedlein,
J. T Sadowski, C. F Hirjibehedin and Y. Yamada-Takamura
Metallic Atomically-Thin Layered Silicon Epitaxially Grown on
Silicene/ZrB2
2D Materials 4, 1 (2017).
Y. Takeichi, T. Ueno, N. Inami, H. Suga, Y. Takahashi and
K. OnoSoft X-Ray Spectromicroscopy using Compact Scanning
Transmission X-Ray Microscope at the Photon Factory
AIP Conf. Proc. 1741, 030047 (2016).
A. Fleurence, T. G. Gill, R. Friedlein, J. T. Sadowski, K. Aoyagi,
M. Copel, R. M. Tromp, C. F. Hirjibehedin and Y. YamadaTakamura
Single-Domain Epitaxial Silicene on Diboride Thin Films
Appl. Phys. Lett. 108, 151902 (2016).

T. Harano, R. Murao, Y. Takeichi, M. Kimura and Y. Takahashi
Observation of Interface between Resin and Carbon Fiber by
Scanning Transmission X-Ray Microscopy
J. Phys.: Conf. Ser. 849, 012023 (2017).
S. Yoshimoto, Y. Shiozawa, T. Koitaya, H. Noritake, K. Mukai
and J. Yoshinobu
Electronic States and Electrical Conductivity of the Si(111)Native Oxide Surface Adsorbed with Electron Donor
Tetrakis(Dimethylamino)Ethylene
J. Appl. Phys. 120, 085310 (2016).
T. Nakamura, Y. Sugizaki, S. Ishida, K. Edamoto and K. Ozawa
Growth of Ultrathin Vanadium Oxide Films on Ag(100)Jpn. J. Appl. Phys. 55, 075501 (2016).
Y. Nakayama, Y. Uragami, M. Yamamoto, K. Yonezawa,
K. Mase, S. Kera, H. Ishii and N. Ueno
High-Resolution Core-Level Photoemission Measurements on
the Pentacene Single Crystal Surface Assisted by
Photoconduction
J. Phys.: Condens. Matter. 28, 1 (2016).
K. Ozawa, S. Yamamoto, R. Yukawa, R. Liu, M. Emori,
K. Inoue, T. Higuchi, H. Sakama, K. Mase and I. Matsuda
What Determines the Lifetime of Photoexcited Carriers on TiO2
Surfaces?
J. Phys. Chem. C 120, 29283 (2016).
T. Watanabe, Y. Yamada, M. Sasaki, S. Sakai and Y. Yamauchi
Pt- and Au-Induced Monodirectional Nanowires on Ge(110)
Surf. Sci. 653, L71 (2016).
C. -C. Lee, J. Yoshinobu, K. Mukai, S. Yoshimoto, H. Ueda,
R. Friedlein, A. Fleurence, Y. Yamada-Takamura and T. Ozaki
Single-Particle Excitation of Core States in Epitaxial Silicene
Phys. Rev. B 95, 115437 (2017).
K. Ozawa, M. Suzuki, R. Tochikubo, H. Kato, Y. Sugizaki,
K. Edamoto and K. Mase
Electron-Donor Dye Molecule on ZnO(1010), (0001), and(0001) Studied by Photoelectron Spectroscopy and X-ray
Absorption Spectroscopy
J. Phys. Chem. C 120, 8653 (2016).
K. Ueda, K. Suzuki, R. Toyoshima, Y. Monya, M. Yoshida,
K. Isegawa, K. Amemiya, K. Mase, B. S. Mun, M. A. Arman,
E. Grånäs, J. Knudsen, J. Schnadt and H. Kondoh
Adsorption and Reaction of CO and NO on Ir(111) under Near
Ambient Pressure Conditions
Top. Catal. 59, 487 (2016).
K. Ozawa and K. Mase
Evidence for Chemical Bond Formation at Rubber-Brass
Interface: Photoelectron Spectroscopy Study of Bonding
Interaction between Copper Sulfide and Model Molecules of
Natural Rubber
Surf. Sci. 654, 14 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
K.Ueda, M. Yoshida, K. Isegawa, N. Shirahata, K. Amemiya,
K. Mase, B. S. Mun and H. Kondoh
Operando Observation of NO Reduction by CO on Ir(111)
Surface Using NAP-XPS and Mass Spectrometry: Dominant
Reaction Pathway to N2 Formation under Near Realistic
Conditions
J. Phys. Chem. C 121, 1763 (2017).
T. Ueno, A. Hashimoto, Y. Takeichi and K. Ono
Quantitative Magnetic-Moment Mapping of a PermanentMagnet Material by X-Ray Magnetic Circular Dichroism NanoSpectroscopy
AIP Advances 7, 056804 (2017).
14A
K. Inoue and S. Kishimoto
Observation of 67 keV X-Rays with a Scintillation Detector
using Proportional-Mode Silicon Avalanche PhotodiodeAIP Conf. Proc. 1741, 040032 (2016).

14C
S. Takeya, K. Nakano, M. Thammawong, H. Umeda,
A. Yoneyama, T. Takeda, K. Hyodo and S. Matsuo
CO2 Processing and Hydration of Fruit and Vegetable Tissues byClathrate Hydrate Formation
Food Chemistry 205, 122 (2016).
M. Ando, N. Sunaguchi, D. Shimao, A. Pan, T. Yuasa, K. Mori,
Y. Suzuki, G. Jing, J. -K. Kim, J. -H. Lim, S. -J. Seo,
S. Ichihara, N. Ohura and R. Gupta
Dark-Field Imaging: Recent Developments and its Potential
Applications
Phys. Medica 32, 1801 (2016).
Former 15A
A. Bando, R. Kasahara, K. Kayashima, Y. Okumura, K. Kato,
Y. Sakai, H. Yokoyama, Y. Shinohara, Y. Amemiya and K. Ito
Volume Phase Transitions of Slide-Ring Gels
Polymers 8, 217 (2016).

S. Kishimoto, T. Mitsui, R. Haruki, Y. Yoda, S. Shimazaki,
M. Saito, M. Ikeno and M. Tanaka
Si-APD Linear-Array X-Ray Detector with 10-100 m Spatial
and Sub-Nanosecond Time Resolution
AIP Conf. Proc. 1741, 040034 (2016).

M. Hishida
Rigidification of Lipid Bilayers and Rupture of the Vesicles
Induced by Addition of n-Alkane
C&I Commun. 42, 30 (2017).

R. Hashimoto, Y. Arai, N. Igarashi, R. Kumai, Y. Lu,
T. Miyoshi, R. Nishimura, Q. Ouyang, Y. Zhou andS. Kishimoto
Evaluation of a Pulse Counting Type SOI Pixel using
Synchrotron Radiation X-Ray
J. Instrum. 12, C03061 (2017).

T. Morita, N. Uehara, K. Kuwahata, H. Imamura, T. Shimada,K. Ookubo, M. Fujita and T. Sumi
Interaction Potential between Biological Sensing Nanoparticles
Determined by Combining Small-Angle X‐Ray Scattering andModel- Potential-Free Liquid Theory
J. Phys. Chem. C 120, 25564 (2016).

R. Hashimoto, Y. Arai, N. Igarashi, R. Kumai, T. Miyoshi and
S. Kishimoto
Test Results of a Counting Type SOI Device for a New X-Ray
Area Detector
AIP Conf. Proc. 1741, 40031 (2016).

15A1
N. Igarashi, H. Nitani, Y. Takeichi, Y. Niwa, H. Abe,
M. Kimura, T. Mori, Y. Nagatani, T. Kosuge, A. Kamijo,
A. Koyama, H. Ohta and N. Shimizu
Newly Designed Double Surface Bimorph Mirror for BL-15A of
the Photon Factory
AIP Conf. Proc. 1741, 040021 (2016).

14B
K. Hirano, Y. Takahashi, K. Hyodo and M. Kimura
X-Ray Analyzer-Based Phase-Contrast Computed Laminography
J. Synchrotron Rad. 23, 1484 (2016).
K. Hirano, Y. Yamashita, Y. Takahashi and H. Sugiyama
Development and Application of Variable-Magnification X-Ray
Bragg optics
AIP Conf. Proc. 1741, 040020 (2016).
M. Ando, N. Sunaguchi, D. Shimao, A. Pan, T. Yuasa, K. Mori,
Y. Suzuki, G. Jing, J. -K. Kim, J. -H. Lim, S. -J. Seo,
S. Ichihara, N. Ohura and R. Gupta
Dark-Field Imaging: Recent Developments and its Potential
Applications
Phys. Medica 32, 1801 (2016).
J. Jiang, K. Hirano and K. Sakurai
Micro-Inaging of Buried Layers and Interfaces in Ultrathin Films
by X-Ray Reflectivity
J. Appl. Phys. 120, 115301 (2016).

M. Kimura, R. Murao, N. Ohta, K. Noami, Y. Uemura, Y. Niwa,
K. Kimijima, Y. Takeichi and H. Nitani
In situ Observation of Reduction Kinetics and 2D Mapping ofChemical State for Heterogeneous Reduction in Iron-Ore Sinters
J. Phys. Conf. Ser. 712, 12077 (2016).
M. Kimura, Y. Takeichi, R. Murao, I. Obayashi, Y. Hiraoka and
Y. LiuChemical State Mapping of Heterogeneous Reduction of Iron
Ore SinterJ. Phys. Conf. Ser. 849, 12015 (2016).
15A2
H. Takagi, , N. Igarashi, T. Mori, S. Saijo, Y. Nagatani, H. Ohta,
K. Yamamoto and N. Shimizu
Structural Analysis of Polymer Thin Films using GISAXS in theTender X- Ray Region: Concept and Design of GISAXS
Experiments using the Tender X- Ray Energy at BL-15A2 at the
Photon Factory
J. Appl. Phys. 120, 142119 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
H. Takagi
A study on New Morphologies in Block Copolymer /Homopolymer Blends using Synchrotron SAXS
Sen'i Gakkaishi 72, 431 (2016).
D. Tanaka, T. Mizuno, M. Hara, S. Nagano, I. Saito,
K. Yamamoto and T. Seki
Evaluations of Mesogen Orientation in Thin Films of
Polyacrylate with Cyanobiphenyl Side Chain
Langmuir 32, 3737 (2016).
A. Noro, Y. Tomita, Y. Matsushita and E. L. Thomas
Enthalpy-Driven Swelling of Photonic Block Polymer Films
Macromolecules 49, 8971 (2016).
I. Saito, D. Shimada, M. Aikawa, T. Miyazaki, K. Shimokita,
H. Takagi and K. Yamamoto
Orientation and Relaxation Behaviors of Lamellar Microdomainsof Poly(methyl methacrylate)-b-Poly(n-butyl acrylate) Thin
Films as Revealed by Grazing-Incidence Small-Angle X-Ray
Scattering
Polym. J. 48, 399 (2016).
N. Igarashi, H. Nitani, Y. Takeichi, Y. Niwa, H. Abe,
M. Kimura, T. Mori, Y. Nagatani, T. Kosuge, A. Kamijo,
A. Koyama, H. Ohta and N. Shimizu
Newly Designed Double Surface Bimorph Mirror for BL-15A of
the Photon Factory
AIP Conf. Proc. 1741, 040021 (2016).
S. Toma-Fukai, J. D. Kim, K. E. Park, N. Kuwabara, N. Shimizu,
E. Krayukhina, S. Uchiyama, A. Fukamizu and T. Shimizu
Novel Helical Assembly in Arginine Methyltransferase 8
J. Mol. Biol. 428, 1197 (2016).
Former 15B1
H. Koizumi, S. Uda, K. Fujiwara, M. Tachibana , K. Kojima and
J. Nozawa
Technique for High-Quality Protein Crystal Growth by Controlof Subgrain Formation under an External Electric Field
Crystals 6, 95 (2016).
16A
Y. Yamasaki and H. Nakao
Novel Development of Resonant Soft X-Ray Scattering
JSSRR 30, 3 (2017).
K. Amemiya, M. Sakamaki, S. Kishimoto, T. Kosuge,
K. Nigorikawa, M. Tanaka, T. Uchida, M. Saito, M. Ikeno and
K. Nakayoshi
Depth-Resolved X-Ray Magnetic Circular Dichroism
Measurement by a Multi-Anode Microchannel Plate Detector
Combined with Polarization Switching
Journal of Physics: Conference Series 712, 012033 (2016).
T. Ichinose, H. Naganuma, T. Miyazaki, M. Oogane, Y. Ando,T. Ueno, N. Inami and K. Ono
Effect of Annealing on Curie Temperature and Phase Transitionin La0.55Sr0.08Mn0.37O3 Epitaxial Films Grown on SrTiO3 (100)Substrates by Reactive Radio Frequency Magnetron Sputtering
Materials Characterization 118, 37 (2016).

Y. Hikosaka, R. Mashiko, T. Odagiri, J. Adachi, H. Tanaka,
T. Kosuge and K. Ito
Photoelectron Recapture and Reemission Process Associatedwith Double Auger Decay in Ar
Phys. Rev. A 93, 63412 (2016).
S. Carniato, P. Selles, P. Lablanquie, J. Palaudoux, L. Andric,
M. Nakano, Y. Hikosaka, K. Ito, T. Marchenko, O. Travnikova,
G. Goldsztejn, L. Journel, R. Guillemin, D. C´eolin, M. Simon,
M. N. Piancastelli and F. Penent
Photon-Energy Dependence of Single-Photon Simultaneous Core
Ionization and Core Excitation in CO2
Phys. Rev. A 94, 13416 (2016).
M. Sakamaki, K. Amemiya, I. Sveklo, P. Mazalski,
M. O. Liedke, J. Fassbender, Z. Kurant, A. Wawro and
A. Maziewski
Formation of Co Nanodisc with Enhanced Perpendicular
Magnetic Anisotropy Driven by Ga+ ion Irradiation on Pt/Co/Pt
Films
Phys. Rev. B 94, 174422 (2016).
K. Z. Suzuki, R. Ranjbar, J. Okabayashi, Y. Miura, A. Sugihara,
H. Tsuchiura and S. Mizukami
Perpendicular Magnetic Tunnel Junction with a Strained MnBased Nanolayer
Sci. Rep. 6, 30249 (2016).
K. Watarai, K. Yoshimatsu, K. Horiba, H. Kumigashira,O. Sakata and A. Ohtomo
Epitaxial Synthesis and Physical Properties of Double-Perovskite
Oxide Sr2CoRuO6 Thin Films
J. Phys.: Condens. Matter. 28, 436005 (2016).
K. Amemiya and M. Sakamaki
Demonstration of One-shot Spatially-Resolved X-Ray
Absorption Spectroscopy Using Wavelength-dispersed SoftX-RaysChem. Lett. 46, 71 (2016).
17A
T. Yamamoto, Y. Tsunematsu, K. Hara, T. Suzuki, S. Kishimoto,
H. Kawagishi, H. Noguchi, H. Hashimoto, Y. Tang, K. Hotta andK. Watanabe
Oxidative Trans to Cis Isomerization of Olefins in Polyketide
Biosynthesis
Angew. Chem. Int. Ed. 55, 6207 (2016).
Y. Sogabe, T. Hashimoto, T. Matsumoto, Y. Kirii, M. Sawa andT. Kinoshita
A Crucial Role of Cys218 in Configuring an Unprecedented
Auto-Inhibition form of MAP2K7
Biochem. Biophys. Res. Commun. 473, 476 (2016).
J. Cheng, Y. Hanada, A. Miura, S. Tsuda and H. Kondo
Hydrophobic Ice-Binding Sites Confer Hyperactivity of an
Antifreeze Protein from a Snow Mold Fungus
Biochem. J. 473, 4011 (2016).
S. Shinya, S. Nishimura, Y. Kitaoku, T. Numata, H. Kimoto,H. Kusaoke, T. Ohnuma and T. Fukamizo
Mechanism of Chitosan Recognition by CBM32 CarbohydrateBinding Modules from a Paenibacillus sp. IK-5
Chitosanase/Glucanase
Biochem. J. 473, 1085 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
A. Kawai, V. T. G. Chuang, Y. Kouno, K. Yamasaki,
S. Miyamoto, M. Anraku and M. Otagiri
Crystallographic Analysis of the Ternary Complex of Octanoate
and N-acetyl-L-methionine with Human Serum Albumin Reveals
the Mode of their Stabilizing Interactions
BBA-Proteins Proteomics 1865, 979 (2017).
Y. Sato, T. Kujirai, R. Arai, H. Asakawa, C. Ohtsuki,
N. Horikoshi, K. Yamagata, J. Ueda, T. Nagase, T. Haraguchi,
Y. Hiraoka, A. Kimura, H. Kurumizaka and H. Kimura
A Genetically Encoded Probe for Live-Cell Imaging of H4K20
Monomethylation
J. Mol. Biol. 428, 3885 (2016).
H. Ohno, D. Minamiguchi, S. Nakamura, K. Shu, S. Okazaki,
M. Honda, R. Misu, H. Moriwaki, S. Nakanishi, S. Oishi,
T. Kinoshita, I. Nakanishi and N. Fujii.
Structure-Activity Relationship Study of 4-(thiazol-5-yl)Benzoic
Acid Derivatives as Potent Protein Kinase CK2 Inhibitors
Bioorg. Med. Chem. 24, 1136 (2016).
K. Ikemoto, M. Fujita, P. C. Too, Y. L. Tnay, S. Sato, S. Chiba
and H. Isobe
Synthesis and Structures of p-Extended [n]Cyclo-paraphenylenes (n=12, 16, 20) Containing n/2 Nitrogen Atoms
Chem. Lett. 45, 658 (2016).
M. Nagae, A. Ikeda, S. Hanashima, T. Kojima, N. Matsumoto,K. Yamamoto and Y. Yamaguchi
Crystal Structure of Human Dendritic Cell Inhibitory Receptor
C-Type Lectin Domain Reveals the Binding Mode with
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S. Negoro, Y. Kawashima, N. Shibata, T. Kobayashi, T. Baba,
Y. -H. Lee, K. Kamiya, Y. Shigeta, K. Nagai, I. Takehara,
D. Kato, M. Takeo and Y. Higuchi
Mutations Affecting the Internal Equilibrium of the Reaction
Catalyzed by 6-Aminohexanoate-Dimer Hydrolase
FEBS Lett. 590, 3133 (2016).
Y. Fujii, Y. Matsunaga, T. Arimori, Y. Kitago, S. Ogasawara,
M. K. Kaneko, Y. Kato and J. Takagi
Tailored Placement of a Turn-Forming PA Tag into the
Structured Domain of a Protein to Probe its Conformational
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J. M. Song, S. K. Hong, Y. J. An, M. H. Kang, K. H. Hong,
Y. -H. Lee and S. -S. Cha
Genetic and Structural Characterization of a Thermo-Tolerant,
Cold-Active, and Acidic Endo--1,4-Glucanase from Antarctic
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Y. J. An, S. E. Rowland, F. T. Robb and S. -S. Cha
Purification, Crystallization, and Preliminary X-Ray
Crystallographic Analysis of the Group III Chaperonin from
Carboxydothermus Hydrogenoformans
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Y. Sakamoto, Y. Suzuki, T. Nonaka, W. Ogasawara and
N. Tanaka
Structural and Functional Studies of Dipeptidyl Aminopeptidasefrom Non-Fermenting Gram -Negative Rods
J. Crystallogr. Soc. Jpn. 58, 221 (2016).
T. Mori, L. Zhang, T. Awakawa, S. Hoshino, M. Okada,
H. Morita and I. Abe
Manipulation of Prenylation Reactions by Structure-BasedEngineering of Bacterial Indolactam Prenyltransferases
Nat. Commun. 7, 10849 (2016).
T. Kujirai, N. Horikoshi, K. Sato, K. Maehara, S. Machida,
A. Osakabe, H. Kimura, Y. Ohkawa and H. Kurumizaka
Structure and Function of Human Histone H3.Y Nucleosome
Nucl. Acids Res. 44, 6127 (2016).
N. Kuwabara, H. Manya, T. Yamada, H. Tateno, M. Kanagawa,
K. Kobayashi, K. Akasaka-Manya, Y. Hirose, M. Mizuno,
M. Ikeguchi, T. Toda, J. Hirabayashi, T. Senda, T. Endo and
R. KatoCarbohydrate-Binding Domain of the POMGnT1 Stem Region
Modulates O-Mannosylation Sites of a-Dystroglycan
Proc. Natl. Acad. Sci. U.S.A. 113, 9280 (2016).
S. Kimura, T. Suzuki, M. Chen, K. Kato, J. Yu, A. Nakamura,
I. Tanaka and M. Yao
Template-Dependent Nucleotide Addition in the Reverse (3'-5')Direction by Thg1-Like Protein
Science Advances 2, e1501397 (2016).
H. Unno, K. Matsuyama, Y. Tsuji, S. Goda, K. Hiemori,H. Tateno, J. Hirabayashi and T. Hatakeyama
Identification, Characterization, and X-Ray Crystallographic
Analysis of a Novel Type of Mannose-Specific Lectin CGL1
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Sci. Rep. 6, 29135 (2016).
J. Chen, A. Yamagata, K. Kubota, Y. Sato, S. Goto-Ito and
S. Fukai
Crystal Structure of Sec10, a Subunit of the Exocyst Complex.
Sci. Rep. 7, 40909 (2017).
T. Akiyama, Y. Yamada, N. Takaya, S. Ito, Y. Sasaki and
S. Yajima
Crystal Structure of an IclR Homologue from Microbacteriumsp. Strain HM58-2
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 73, 16 (2017).
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S. B. Hong, I. Y. Lee, J. H. Song, W. C. Lee, E. J. Choi,
K. Y. Hwang and H. K. SongThe 1:2 Complex between RavZ and LC3 Reveals a Mechanism
for Deconjugation of LC3 on the Phagophore Membrane
Autophagy 13, 70 (2016).
L. -J. Yu, T. Kawakami, Y. Kimura and Z. -Y. Wang-Otomo
Structural Basis for the Unusual Qy Red-Shift and Enhanced
Thermostability of the LH1 Complex from Thermochromatium
Tepidum
Biochemistry 55, 6495 (2016).
Z. Yan, A. Maruyama, T. Arakawa, S. Fushinobu and T. Wakagi
Crystal Structures of Archaeal 2-Oxoacid:Ferredoxin
Oxidoreductases from Sulfolobus tokodaii
Sci. Rep. 6, 33061 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
M. Saotome, K. Saito, K. Onodera, H. Kurumizaka and
W. Kagawa
Structure of the Human DNA-Repair Protein RAD52 Containing
Surface Mutations
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 72, 598 (2016).
M. Ohki, K. Sugiyama, F. Kawai, H. Tanaka, Y. Nihei, S. Unzai,
M. Takebe, S. Matsunaga, S. Adachi, N. Shibayama, Z. Zhou,
R. Koyama, Y. Ikegaya, T. Takahashi, J. R. Tame, M. Iseki and
S. Y. Park
Structural Insight into Photoactivation of an Adenylate Cyclase
from a Photosynthetic Cyanobacterium
Proc. Natl. Acad. Sci. U. S. A. 113, 6659 (2016).
J. Ueda, A. Harada, T. Urahama, S. Machida, K. Maehara,
M. Hada, Y. Makino, J. Nogami, N. Horikoshi, A. Osakabe,
H. Taguchi, H. Tanaka, H. Tachiwana, T. Yao, M. Yamada,T. Iwamoto, A. Isotani, M. Ikawa, T. Tachibana, Y. Okada,H. Kimura, Y. Ohkawa, H. Kurumizaka and K. Yamagata
Testis-Specific Histone Variant H3t Gene Is Essential for Entry
into Spermatogenesis
Cell Reports 18, 593 (2017).
Y. Ye, W. Saburi, R. Odaka, K. Kato, N. Sakurai, K. Komoda,
M. Nishimoto, M. Kitaoka, H. Mori and M. Yao
Structural Insights into the Difference in Substrate Recognitionof Two Mannoside Phosphorylases from Two GH130
Subfamilies
FEBS Lett. 590, 828 (2016).
H. Hirano, J. Kobayashi and Y. Matsuura
Structures of the Karyopherins Kap121p and Kap60p Bound to
the Nuclear Pore-Targeting Domain of the SUMO Protease
Ulp1p
J. Mol. Biol. 429, 249 (2017).
K. Suzuki, K. Mizutani, S. Maruyama, K. Shimono, F. L. Imai,
E. Muneyuki, Y. Kakinuma, Y. Ishizuka-Katsura, M. Shirouzu,
S. Yokoyama, I. Yamato and T. Murata
Crystal Structures of the ATP-Binding and ADP-Release Dwellsof the V1 Rotary Motor
Nat. Commun. 7, 13235 (2016).
S. Machida, S. Sekine, Y. Nishiyama, N. Horikoshi and
H. Kurumizaka
Structural and Biochemical Analyses of Monoubiquitinated
Human Histones H2B and H4Open Biology 6, 160090 (2016).
C. Akatsu, K. Shinagawa, N. Numoto, Z. Liu, A. Konuskan
Ucar, M. Aslam, S. Phoon, T. Adachi, K. Furukawa, N. Ito and
T. Tsubata
CD72 Negatively Regulates B Lymphocyte Responses to the
Lupus-Related Endogenous Toll-Like Receptor 7 Ligand
Sm/RNP
The Journal of Experimental Medicine 213, 2691 (2016).
T. Yamaguchi, K. Akao, A. Takashina, S. Asamura, M. Unno,
R. K. Szilagyi and T. Kohzuma
X-Ray Crystallographic Evidence for the Simultaneous Presenceof Axial and Rhombic Sites in Cupredoxins: Atomic Resolution
X-Ray Crystal Structure Analysis of Pseudoazurin and DFT
Modelling
RSC Advances 6, 88358 (2016).

S. Fushinobu
Development of Aerobic Fermentation System using Edible
Waste Oil and Characteristics of Thermophilic Lipases
Life and Environment 61, 67 (2016).
N. Kobayashi, N. Kimura and R. Arai
De Novo Proteins Created by Binary Pattern Strategy andSupramolecular Nanostructure Complexes Constructed fromProtein Nanobuiliding Blocks
Seibutsu-kogaku Kaishi 94, 485 (2016).
T. Matsuzawa, T. Jo, T. Uchiyama, J. A. Manninen, T. Arakawa,T. Arakawa, S. Fushinobu and K. Yaoi
Crystal Structure and Identification of a Key Amino Acid for
Glucose Tolerance, Substrate Specificity and Transglycosylation-Glucosidase Td2F2
FEBS J. 283, 2340 (2016).
PF17A
M. Eda, T. Matsumoto, M. Ishimaru and T. Tada
Structural and Functional Analysis of Tomato -Galactosidase 4:
Insight Into the Substrate Specificity of the Fruit SofteningRelated Enzyme
The Plant Journal 86, 300 (2016).
18B
K. Malik, Diptasikha Das, A. K. Deb, V. A. Kulbachinskii,
V. Srihari, S. Bandyopadhyay and A. Banerjee
Evidence of Iso-Structural Phase Transition in Rhombohedral
Bi-Sb Alloy
Europhys. Lett. 115, 58001 (2016).
S. N. Guin, S. Banerjee, D. Sanyal, S. K. Pati and K. Biswas
Origin of the Order-Disorder Transition and the AssociatedAnomalous Change of Thermopower in AgBiS2 Nanocrystals :A Combined Experimental and Theoretical Study
Inorg. Chem. 55, 6323 (2016).
G. Bhattacharya, R. P. Giri, H. Saxena, V. V. Agrawal,
A. Gupta, M. K. Mukhopadhyay and S. K. Ghosh
X-Ray Reflectivity Study of the Interaction of an ImidazoliumBased Ionic Liquid with a Soft Supported Lipid Membrane
Langmuir 33, 1295 (2017).
N. Midya, S. K. Neogi, Md. A. Ahmed, A. Banerjee, P. Kumar,
D. Kanjilal and S. Bandyopadhyay
Correlation between Magnetic and Micro-Structural Properties of
Low Energy Ion Irradiated and Un-Irradiated Zn0.95Mn0.05O
Films
RSC Advances 7, 771 (2017).
A. Malakar, B. Das, S. Islam, C. Meneghini, G. De Giudici,
M. Merlini, Y. V. Kolen’ko, A. Iadecola, G. Aquilanti,
S. Acharya and S. Ray
Efficient Artificial Mineralization Route to Decontaminate
Arsenic(III) Polluted Water - the Tooeleite Way
Sci. Rep. 6, 26031 (2016).
18C
Y Ishii, Y. Sakamoto, H. Song, K. Tashiro, Y. Nishiwaki,
A. Al-zubaidi and S. Kawasaki
Alkali Metal Ion Storage Properties of Sulphur and Phosphorous
Molecules Encapsulated in Nanometer Size Carbon CylindricalPores
AIP Adv. 6, 35112 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
A. Shinozaki, K. Mimura, T. Nishida, T. Inoue, S. Nakano and
H. Kagi
Stability and Partial Oligomerization of Naphthalene under High
Pressure at Room Temperature
Chem. Phys. Lett. 662, 263 (2016).
S. Takahashi, H. Kagi, C. Fujimoto, A. Shinozaki, H. Gotou,
T. Nishida and K. Mimura
Pressure-Induced Freeze Concentration of Alanine Aqueous
Solution as a Novel Field of Chemical Reaction
Chem. Lett. 46, 334 (2017).
Y. Chen, Y. Kawamura, J. Hayashi, K. Takeda and C. Sekine
The Structural, Transport, and Magnetic Properties of Yb-Filled
Skutterudites YbyFexCo4-xSb12 Synthesized under High Pressure
J. Appl. Phys. 120, 235105 (2016).
Y. Kawamura, J. Hayashi, K. Takeda, C. Sekine, H. Tanida,
M. Sera and T. Nishioka
Structural Analysis of Novel Antiferromagnetic Material
CeRu2Al10 and its Related Compounds under Pressure
J. Phys. Soc. Jpn. 85, 044601 (2016).
Y. Ishii, K. Tashiro, K. Hosoe, A. Al-zubaidi and S. Kawasaki
Electrochemical Lithium-Ion Storage Properties of Quinone
Molecules Encapsulated in Single-Walled Carbon Nanotubes
Phys. Chem. Chem. Phys. 18, 10411 (2016).
A. Shinozaki, H. Kagi, H. Hirai, H. Ohfuji, T. Okada, S. Nakano
and T. Yagi
Preferential Dissolution of SiO2 from Enstatite to H2 Fluid underHigh Pressure and Temperature
Phys. Chem. Mineral. 43, 277 (2016).

20A
M. Kitajima, K. Shigemura, K. Hosaka, T. Odagiri, M. Hoshinoand H. Tanaka
Cross Sections for Ultra-Low-Energy Electron Scattering from
Atoms and Molecules
AIP Conf. Proc. 1790, 020012 (2016).
K. Hosaka, K. Shiino, Y. Nakanishi, T. Odagiri, M. Kitajima andN. Kouchi
Dynamics of the Q21Πu(1) State Studied from the Isotope Effecton the Cross Sections for the Formation of the 2p Atom Pair in
the Photoexcitation of H2 and D2
Phys. Rev. A 93, 063423 (2016).
20B
H. Koizumi, R. Suzuki, M. Tachibana, K. Tsukamoto,I. Yoshizaki, S. Fukuyama, Y. Suzuki, S. Uda and K. Kojima
Importance of Determination of Crystal Quality in Protein
Crystals when Performing High-Resolution Structural Analysis
Cryst. Growth Des. 16, 4905 (2016).
Y. Tominaga, M. Maruyama, M. Yoshimura, H. Koizumi,
M. Tachibana, S. Sugiyama, H. Adachi, K. Tsukamoto,
H. Matsumura, K. Takano, S. Murakami, T. Inoue,
H. Y. Yoshikawa and Y. Mori
Promotion of Protein Crystal Growth by Actively Switching
Crystal Growth Mode Via Femtosecond Laser Ablation
Nature Photonics 10, 723 (2016).
H. Yamaguchi, A. Kuramata and T. Masui
Slip System Analysis and X-Ray Topographic Study on -Ga2O3
Superlattices Microstruct. 99, 99 (2016).

Y. Tsujimoto, S. Nakano, N. Ishimatsu, M. Mizumaki,
N. Kawamura, T. Kawakami, Y. Matsushita and K. Yamaura
Pressure-Driven Spin Crossover Involving Polyhedral
Transformation in Layered Perovskite Cobalt Oxyfluoride
Sci. Rep. 6, 36253 (2016).

H. Koizumi, S. Uda, K. Fujiwara, M. Tachibana , K. Kojima and
J. Nozawa
Technique for High-Quality Protein Crystal Growth by Controlof Subgrain Formation under an External Electric Field
Crystals 6, 95 (2016).

19A
E. Annese, T. Kuzumaki, B. Müller, Y. Yamamoto, H. Nakano,
H. Kato, A. Araki, M. Ohtaka, T. Aoki, H. Ishikawa,
T. Hayashida, JR. Osiecki, K. Miyamoto, Y. Takeichi,
A. Harasawa, K. Yaji, T. Shirasawa, K. Nittoh, W. Yang,
K. Miki , T. Oda, H. W. Yeom and K. Sakamoto
Nonvortical Rashba Spin Structure on a Surface with C1hSymmetry
Phys. Rev. Lett. 117, 016803 (2016).

Kaoru Mizuno, Hiroyuki Okamoto, Eiji Hashimoto and Takao
Kino
Reduction of Large Vacancy Clusters in Nearly Perfect
Aluminum Single Crystals
Transactions of the Materials Research Society of Japan 41, 243(2016)

Former 19A
K. Yaji, S. Kim, I. Mochizuki, Y. Takeichi, Y. Ohtsubo,
P. Le Fèvre, F. Bertran, A. Taleb-Ibrahimi, S. Shin and
F. Komori
One-Dimensional Metallic Surface States of Pt-Induced Atomic
Nanowires on Ge(001)
J. Phys.: Condens. Matter. 28, 284001 (2016).
19B
K. Yaji, S. Kim, I. Mochizuki, Y. Takeichi, Y. Ohtsubo,
P. Le Fèvre, F. Bertran, A. Taleb-Ibrahimi, S. Shin and
F. Komori
One-Dimensional Metallic Surface States of Pt-Induced Atomic
Nanowires on Ge(001)
J. Phys.: Condens. Matter. 28, 284001 (2016).

S. Shikata, Y. Tsuchida, K. Yamaguchi, E. Kamei, D. Fukunaga,
Y. Tabuchi and N. Ohtani
Evaluation of p + HPHT Diamond Substrate for Power Device
Application
Diam. Relat. Mat. 73, 241(2017)
27A
Y. Baba, I. Shimoyama and N. Hirao
Chemical State Analysis of Trace-Level Alkali Metals Sorbed in
Micaceous Oxide by Total Reflection X-Ray Photoelectron
Spectroscopy
Appl. Surf. Sci. 384, 511 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
M. Tomita, M. Maeda, N. Usami, A. Yokoya, R. Watanabe andK. Kobayashi
Enhancement of DNA Double-Strand Break Induction and Cell
Killing by K-Shell Absorption of Phosphorus in Human Cell
Lines.
Int. J. Radiat. Biol. 92, 724 (2016).

H. Kojima, H. Yoshizaki, Y. Kaneno, S. Semboshi, F. Hori,
Y. Saitoh, Y. Okamoto and A. Iwase
Lattice Structure Transformation and Change in Surface
Hardness of Ni3Nb and Ni3Ta Intermetallic Compounds Induced
by Energetic Ion Beam Irradiation
Nucl. Instr. Meth. Phys. Res. B 372, 72 (2016).

N. Hirao, I. Shimoyama, Y. Baba, T. Izumi, Y. Okamoto,T. Yaita and S. Suzuki
Desorption Behavior of Cs from Clay Minerals by Thermal
Heating in Vacuum: Analysis by Thermal Desorption
Spectroscopy and X-Ray Photoelectron Spectroscopy using
Synchrotron Radiation
Bunseki Kagaku 65, 259 (2016).

R. Mayumi, S. Semboshi, Y. Okamoto, Y. Saitoh, T. Yoshiie andA. Iwase
Radiation Enhanced Precipitation of Solute Atoms in AlCu
Binary Alloys- Energetic ion Irradiation Experiment andComputer Simulation Trans. Mat. Res. Soc. Jpn. 42, 9 (2017).

A. Narita, K. Fujii, Y. Baba and I. Shimoyama
Use of a DNA Film on a Self-Assembled Monolayer for
Investigating the Physical Process of DNA Damage Induced byCore Electron Ionization
Int. J. Radiat. Biol. 92, 733 (2016).
I. SHIMOYAMA
Formation of Carbon Alloys by Low-Energy Ion Doping and its
Application for Adsorptive Desulfurization
Materials Science 141, 7 (2016).
I. Shimoyama, N. Hirao and Y. Baba
Orientation Control Effect of Ion Beam for Silicon Polymer Thin
Films
Bulletin of the Society for Discrete Variational Xα 29, 70 (2016).
E. Fumitaka, N. Takehiro, U. Haruhiko, M. Masaaki and
Y. Hiroyuki
Non-Destructive Depth Analysis of the Surface Oxide Layer on
Mg2Si with XPS and XAS
Surf. Interface Anal. 48, 432 (2016).
27B
K. Kaminaga, M. Noguchi, A. Narita, Y. Hattori, N. Usami andA. Yokoya
Cell cycle Tracking for Irradiated and Umirradiated Bystander
Cells in a Single Colony with Exposure to a Soft X-Ray
Microbeam
Int. J. Radiat. Biol. 92, 739 (2016).
T. Nagai, H. Kobayashi, K. Sasage, Y. Ayame, Y. Okamoto,H. Shiwaku, H. Matsuura, T. Uchiyama, Y. Okada, A. Nezu,
H. Akatsura, T. Kakihara and H. Kawashima
XAFS Measurement of Simulated Waste Glass Samples(Borosilicate Glass Including Vanadium)
JAEA-Res. 2016, 15 (2016).
Y. Fujimura, T. Matsui, S. Semboshi, Y. Okamoto, K. Nishida,
Y. Yamamoto and A. Iwase
Structure of Thermal-Aging Induced Fe Clusters and Their
Effects on Physical Properties for Cu-1.2 at.% Fe Alloy
Journal of Alloys and Compounds 682, 805 (2016).
R. Abe, K. Nagoshi, T. Arai, S. Watanabe, Y. Sano,
H. Matsuura, H. Takagi, N. Shimizu, M. Koka and T. Sato
Microscopic Analyses of Complexes Formed in Adsorbent for
Mo and Zr Separation Chromatography
Nucl. Instr. Meth. Phys. Res. B 404, 173 (2017).

28A
M. Horio, T. Adachi, Y. Mori, A. Takahashi, T. Yoshida,
H. Suzuki, L. C. C. Ambolode II, K. Okazaki, K. Ono,
H. Kumigashira, H. Anzai, M. Arita, H. Namatame,
M. Taniguchi, D. Ootsuki, K. Sawada, M. Takahashi,
T. Mizokawa, Y. Koike and A. Fujimori
Suppression of the Antiferromagnetic Pseudogap in the ElectronDoped High-Temperature Superconductor by Protect Annealing
Nat. Commun. 7, 10567 (2016).
S. Souma, Z. Wang, H. Kotaka, T. Sato, K. Nakayama,
Y. Tanaka, H. Kimizuka, T. Takahashi, K. Yamauchi, T. Oguchi,
K. Segawa and Y. Ando
Direct Observation of Nonequivalent Fermi-Arc States of
Opposite Surfaces in Noncentrosymmetric Weyl Semimetal NbP
Phys. Rev. B 93, 161112(R) (2016).
C. X. Trang, Z. Wang, D. Takane, K. Nakayama, S. Souma,
T. Sato, T. Takahashi, A. A. Taskin and Y. Ando
Fermiology of Possible Topological Superconductor Tl0.5Bi2Te3
Derived from Hole-Doped Topological Insulator
Phys. Rev. B 93, 241103(R) (2016).
28B
N. Suzuki, S. Kosugi, Y. Ito, N. Inoue, T. Nagoshi, N. Kuze,
J. R Harries, J. P Sullivan, T. Nagata, E. Sokell, F. Koike andY. Azuma
Probing Electron Correlation Through Radiative Lifetime
Measurements upon Inner-Valence Photoionization of Ne and Ar
Journal of Physics B 49, 145002 (2016).
28
M. Horio, T. Adachi, Y. Mori, A. Takahashi, T. Yoshida,
H. Suzuki, L. C. C. Ambolode II, K. Okazaki, K. Ono,
H. Kumigashira, H. Anzai, M. Arita, H. Namatame,
M. Taniguchi, D. Ootsuki, K. Sawada, M. Takahashi,
T. Mizokawa, Y. Koike and A. Fujimori
Suppression of the Antiferromagnetic Pseudogap in the ElectronDoped High-Temperature Superconductor by Protect Annealing
Nat. Commun. 7, 10567 (2016).
S. Souma, Z. Wang, H. Kotaka, T. Sato, K. Nakayama,
Y. Tanaka, H. Kimizuka, T. Takahashi, K. Yamauchi, T. Oguchi,
K. Segawa and Y. Ando
Direct Observation of Nonequivalent Fermi-Arc States of
Opposite Surfaces in Noncentrosymmetric Weyl Semimetal NbP
Phys. Rev. B 93, 161112(R) (2016).

Photon Factory Activity Report 2016 #34 (2017) B
NE1A
T. Yamamoto, H. Ohkubo, C. Tassel, N. Hayashi, S. Kawasaki,
T. Okada, T. Yagi, J. Hester, M. Avdeev, Y. Kobayashi and
H. Kageyama
Impact of Lanthanoid Substitution on the Structural and Physical
Properties of an Infinite-Layer Iron Oxide
Inorg. Chem. 55, 12093 (2016).
S. Ono and T. Kikegawa
Determination of the Phase Boundary of GaP using in Situ HighPressure and High-Temperature X-Ray Diffraction
High Press. Res. 37, 28 (2017).

J. Wachino, Y. Yamaguchi, S. Mori, W. Jin, K. Kimura,
H. Kurosaki and Y. Arakawa
Structural Insights into Recognition of Hydrolyzed Carbapenems
and Inhibitors by Subclass B3 Metallo--Lactamase SMB-1
Antimicrob Agents Chemother 60, 4274 (2016).
H. Yoshida, A. Yoshihara, T. Ishii, K. Izumori and S. Kamitori
X-Ray Structures of the Pseudomonas Cichorii D-Tagatose 3Epimerase Mutant form C66S Recognizing Deoxy Sugars
Appl. Microbiol. Biotechnol. 100, 10403 (2016).

T. Kawauchi, X. Zhang and K. Fukutani
Analysis of Quadrupole Splitting of Multiple Fe Sites Intermixedin Si(111) with Mössbauer Spectroscopy
J. Magn. Magn. Mater. 419, 43 (2016).

T. Yamaguchi, K. Akao, A. Takashina, S. Asamura, M. Unno,
R. K. Szilagyi and T. Kohzuma
X-Ray Crystallographic Evidence for the Simultaneous Presenceof Axial and Rhombic Sites in Cupredoxins: Atomic Resolution
X-Ray Crystal Structure Analysis of Pseudoazurin and DFT
Modelling
RSC Advances 6, 88358 (2016).

Y. Tsuchiya, S. Ikeda, X. -W Zhang, S. Kishimoto, T. Kikegawa,N. Hirao, S. I. Kawaguchi, Y. Ohishi and H. Kobayashi
Pressure-Induced Phase Transition in KxFe2-yS2
J. Phys. Soc. Jpn. 86, 33705 (2017).

Z. Sun, N. Miyamoto, S. Sato, H. Tokuyama and H. Isobe
An Obtuse-Angled Corner Unit for Fluctuating Carbon
Nanohoops
Chemistry an Asian Journal 12, 271 (2017).

T. Kawauchi, Y. Miura, X. Zhang, and K. FukutaniInterface-Driven Noncollinear Magnetic Structure and Phase
Transition of Fe Thin Films
Phys. Rev. B 95, 014432 (2017).
A. Ohmura, Y. Higuchi, T. Ochiai, M. Kanou, F. Ishikawa,
S. Nakano, A. Nakayama, Y. Yamada and T. Sasagawa
Pressure-Induced Topological Phase Transition in the Polar
Semiconductor BiTeBr
Phys. Rev. B 95, 125203 (2017).

Y. Fukudaa, H. Sakurabab, T. Arakia, T. Ohshimac andK. Yoneda
Catalytic Properties and Crystal Structure of Thermostable
NAD(P)H-Dependent Carbonyl Reductase from theHyperthermophilic Archaeon Aeropyrum Pernix K1
Enzyme and Microbial Technology 91, 17 (2016).

S. Ono and T. Kikegawa
Titanium Boride Equation of State determined by In-Situ X-Ray
Diffraction
Heliyon 2, e00220 (2016).
K. Kobayashi, J. Yamaura, S. Iimura, S. Maki, H. Sagayama,
R. Kumai, Y. Murakami, H. Takahashi, S. Matsuishi andH. Hosono
Pressure Effect on Iron-Based Superconductor LaFeAsO1-xHx:
Peculiar Response of 1111-Type Structure
Sci. Rep. 6, 39646 (2016).
NE3A
P. Sarkar, Z. Sun, T. Tokuhira, M. Kotani, S. Sato and H. Isobe
Stereoisomerism in Nanohoops with Heterogeneous Biaryl
Linkages of E/Z- and R/S-Geometries
ACS Cent. Sci. 2, 740 (2016).
M. Chen, S. Narai, N. Omura, N. Shigi, S. Chimnaronk,
Y. Tanaka and M. Yao
Crystallographic Study of the 2-Thioribothymidinesynthetic
Complex TtuA-TtuB from Thermus Thermophilus
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 72, 777 (2016).
T. Matsuno, S. Sato, A. Yokoyama, S. Kamata and H. Isobe
Self-Sorting of Two Hydrocarbon Receptors with One
Carbonaceous Ligand
Angew. Chem. Int. Ed. 55, 15339 (2016).

L. Asano, T. Waku, R. Abe, N. Kuwabara, I. Ito, J. Yanagisawa,
K. Nagasawa and T. Shimizu
Regulation Mechanism of the Vitamin D Receptor by Vitamin D
Lactam Derivatives
FEBS Lett. 590, 3270 (2016).
E. Tamai, H. Sekiya, E. Goda, N. Makihata, J. Maki, H. Yoshida
and S. Kamitori
Structural and Biochemical Characterization of the Clostridium
Perfringens Autolysin Catalytic Domain
FEBS Lett. 591, 231 (2017).
Z. Zhang, U. Ohto, T. Shibata, E. Krayukhina, M. Taoka,
Y. Yamauchi, H. Tanji, T. Isobe, S. Uchiyama, K. Miyake andT. Shimizu
Structural Analysis Reveals that Toll-Like Receptor 7 is a Dual
Receptor for Guanosine and Single-Stranded RNA
Immunity 45, 737 (2016).
M. Hayashi, R. Suzuki, C. Colleoni, S. G. Ball, N. Fujita andE. Suzuki
Bound Substrate in the Structure of Cyanobacterial Branching
Enzyme Supports a New Mechanistic Model
J. Biol. Chem. 292, 5465 (2017).
S. Toma-Fukai, J. D. Kim, K. E. Park, N. Kuwabara, N. Shimizu,
E. Krayukhina, S. Uchiyama, A. Fukamizu and T. Shimizu
Novel Helical Assembly in Arginine Methyltransferase 8
J. Mol. Biol. 428, 1197 (2016).
U. Ohto, H. Ishida, E. Krayukhina, S. Uchiyama, N.u Inoue andT. Shimizu
Structure of IZUMO1-JUNO Reveals Sperm-Oocyte
Recognition during Mammalian Fertilization
Nature 534, 566 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
H. Tanji, U. Ohto, Y. Motoi, T. Shibata, K. Miyake andT. Shimizu
Autoinhibition and Relief Mechanism by the Proteolytic
Processing of Toll-Like Receptor 8
Proc. Natl. Acad. Sci. U.S.A. 113, 3012 (2016).

H. -M. Qin, T. Miyakawa, A. Inoue, R. Nishiyama,
A. Nakamura, A. Asano, Y. Sawano, T. Ojima and M. Tanokura
Structure and Polymannuronate Specificity of a Eukaryotic
Member of Polysaccharide Lyase Family 14.
J. Biol. Chem. 292, 2182 (2017).

Z. Sun, T. Suenaga, P. Sarkar, S. Sato, M. Kotani and H. Isobe
Stereoisomerism, Crystal Structures, and Dynamics of BeltShaped Cyclonaphthylenes
Proc. Natl. Acad. Sci. U.S.A. 113, 8109 (2016).

T. Miyazaki, A. Nishikawa and T. Tonozuka
Crystal Structure of the Enzyme-Product Complex Reveals
Sugar Ring Distortion during Catalysis by Family 63 Inverting-Glycosidase
J. Struct. Biol. 196, 479 (2016).

Y. Hirato, M. Goto, M. Tokuhisa, M. Tanigawa andK. Nishimura
Crystallization and X-Ray Analysis of D-Threonine Aldolasefrom Chlamydomonas reinhardtii.
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 73, 86 (2017).

Y. Sakamoto, Y. Suzuki, T. Nonaka, W. Ogasawara and
N. Tanaka
Structural and Functional Studies of Dipeptidyl Aminopeptidasefrom Non-Fermenting Gram -Negative Rods
J. Crystallogr. Soc. Jpn. 58, 221 (2016).

S. Matsumoto, Y. Taguchi, A. Shimada, M. Igura and D. Kohda
Tethering an N-Glycosylation Sequon-Containing Peptide
Creates a Catalytically Competent Oligosaccharyltransferase
Complex
Biochemistry 56, 602 (2017).

K. -g. Hyun, J. E. Oh, J. Park, Y. -S. Noh and J. -J. Song
Structural Analysis of FRIGIDA Flowering-Time Regulator
Mol. Plant 9, 18 (2016).

S. Saijo, A. Nagai, S. Kinjo, R. Mashimo, M. Akimoto, K.
Kizawa, T. Yabe-Wada, N. Shimizu, H. Takahara and M. Unno
Monomeric Form of Peptidylarginine Deiminase Type I
Revealed by X-Ray Crystallography and Small-Angle X-Ray
Scattering
J. Mol. Biol. 428, 3058 (2016).

N. Kuwabara, H. Manya, T. Yamada, H. Tateno, M. Kanagawa,
K. Kobayashi, K. Akasaka-Manya, Y. Hirose, M. Mizuno,
M. Ikeguchi, T. Toda, J. Hirabayashi, T. Senda, T. Endo and
R. KatoCarbohydrate-Binding Domain of the POMGnT1 Stem Region
Modulates O-Mannosylation Sites of a-Dystroglycan
Proc. Natl. Acad. Sci. U.S.A. 113, 9280 (2016).

A. Yamasaki, Y. Watanabe, W. Adachi, K. Suzuki, K. Matoba,
H. Kirisako, H. Kumeta, H. Nakatogawa, Y. Ohsumi and
F. Inagaki
Structural Basis for Receptor-Mediated Selective Autophagy ofAminopeptidase I Aggregates
Cell Reports 16, 19 (2016).
S. Fudo, F. Qi, M. Nukaga and T. Hoshino
Influence of Precipitants on Molecular Arrangement and SpaceGroup of Protein Crystals
Cryst. Growth Des. 17, 534 (2017).

A. Miyanaga, S. Iwasawa, Y. Shinohara, F. Kudo and T. Eguchi
Structure-Based Analysis of the Molecular Interactions between
Acyltransferase and Acyl Carrier Protein in Vicenistatin
Biosynthesis
Proc. Natl. Acad. Sci. U.S.A. 113, 1802 (2016).
S. Kudo, JM. Caaveiro and K. Tsumoto
Adhesive Dimerization of Human P-Cadherin Catalyzed by a
Chaperone-like Mechanism
Structure 24, 1523 (2016).

A. Miyanaga, F. Kudo and T. Eguchi
Mechanisms of -Amino Acid Incorporation in Polyketide
Macrolactam Biosynthesis
Current Opinion in Chemical Biology 35, 58 (2016).

Y. Nishigaya, Z. Fujimoto and T. Yamazaki
Optimized Inhibition Assays Reveal Different Inhibitory
Responses of Hydroxylamine Oxidoreductases from Beta- andGamma-Proteobacterial Ammonium-Oxidizing Bacteria
Biochem. Biophys. Res. Commun. 476, 127 (2016).

M. Nagae, A. Ikeda, S. Hanashima, T. Kojima, N. Matsumoto,K. Yamamoto and Y. Yamaguchi
Crystal Structure of Human Dendritic Cell Inhibitory Receptor
C-Type Lectin Domain Reveals the Binding Mode with NGlycan
FEBS Lett. 590, 1280 (2016).

T. Shimizu, L. Yin, A. Yoshida, Y. Yokooji, S. Hachisuka,
T. Sato, T. Tomita, H. Nishida, H. Atomi, T. Kuzuyama andM. Nishiyama
Structure and Function of an Ancestral-Type -Decarboxylating
Dehydrogenase from Thermococcus Kodakarensis
Biochem. J. 474, 105 (2017).

A. Yoshida, T. Tomita, H. Atomi, T. Kuzuyama andM. Nishiyama
Lysine Biosynthesis of Thermococcus kodakarensis with the
Capacity to Function as an Ornithine Biosynthetic System.
J. Biol. Chem. 291, 21630 (2016).

L. -J. Yu, T. Kawakami, Y. Kimura and Z. -Y. Wang-Otomo
Structural Basis for the Unusual Qy Red-Shift and Enhanced
Thermostability of the LH1 Complex from Thermochromatium
Tepidum
Biochemistry 55, 6495 (2016).

T. Shimizu, T. Tomita, T. Kuzuyama and M. Nishiyama
Crystal Structure of the LysY・LysW Complex from Thermus
thermophilus.
J. Biol. Chem. 291, 9948 (2016).

S. Fushinobu
Development of Aerobic Fermentation System using Edible
Waste Oil and Characteristics of Thermophilic Lipases
Life and Environment 61, 67 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
C. Suzuki-Minakuchi, K. Kawazuma, J. Matsuzawa,D. Vasileva, Z. Fujimoto, T. Terada, K. Okada and H. Nojiri
Structural Similarities and Differences in H-NS Family Proteins
Revealed by the N-Terminal Structure of TurB in Pseudomonas
Putida KT2440
FEBS Lett. 590, 3583 (2016).
T. Oyama, S. Ishino, T. Shirai, T. Yamagami, M. Nagata,
H. Ogino, M. Kusunoki and Y. Ishino
Atomic Structure of an Archaeal GAN Suggests its Dual Roles
as an Exonuclease in DNA Repair and a CMG Component in
DNA Replication
Nucl. Acids Res. 44, 9505 (2016).
H. Yoshida, A. Yoshihara, T. Ishii, K. Izumori and S. Kamitori
X-Ray Structures of the Pseudomonas Cichorii D-Tagatose 3Epimerase Mutant form C66S Recognizing Deoxy Sugars
Appl. Microbiol. Biotechnol. 100, 10403 (2016).
T. Matsuzawa, T. Jo, T. Uchiyama, J. A. Manninen, T. Arakawa,T. Arakawa, S. Fushinobu and K. Yaoi
Crystal Structure and Identification of a Key Amino Acid for
Glucose Tolerance, Substrate Specificity and Transglycosylation
Activity of Metagenomic -Glucosidase Td2F2
FEBS J. 283, 2340 (2016).
N. Kobayashi, N. Kimura and R. Arai
De Novo Proteins Created by Binary Pattern Strategy andSupramolecular Nanostructure Complexes Constructed fromProtein Nanobuiliding Blocks
Seibutsu-kogaku Kaishi 94, 485 (2016).
M. Kubota, K. Takeuchi, S. Watanabe, S. Ohno, R. Matsuoka,
D. Kohda, S. Nakakita, H. Hiramatsu, Y. Suzuki, T. Nakayama,
T. Terada, K. Shimizu, N Shimizu, M. Shiroishi, Y. Yanagi and
T. Hashiguchi
Trisaccharide Containing 2,3-Linked Sialic Acid is a Receptor
for Mumps Virus
Microbiology 13, 11579 (2016).
NE5C
M. Nagayoshi, T. Kubo and T. Kato
Experimental Investigation of the Kinetics of the Spinel-toGarnet Transformation in Peridotite: A Preliminary Study
Am. Mineral. 101, 2020 (2016).
T. Hirayama, Y. Eguchi, K. Saeki, T. Matsuoka and T. Kikegawa
Structural Analysis of a-C:H and a-C:H:Si Films under HighPressure and High-Temperature by Synchrotron X-Ray
Diffraction
Diam. Relat. Mat. 70, 73 (2016).
T. Fujii, H. Ohfuji and T. Inoue
Phase Relation of CaSO4 at High Pressure and Temperature up to
90 GPa and 2300 K
Phys. Chem. Mineral. 43, 353 (2016).
A. Suzuki
Pressure-Volume-Temperature Equation of State of -FeOOH to
11 GPa and 700 K
J. Mineral. Petrol. Sci. 111, 420 (2016).

NE7A
K. Nishida, A. Suzuki, H. Terasaki, Y. Shibazaki, Y. Higo,
S. Kuwabara, Y. Shimoyama, M. Sakurai, M. Ushioda,
E. Takahashi, T. Kikegawa, D. Wakabayashi and N. Funamori
Towards a Consensus on the Pressure and Composition
Dependence of Sound Velocity in the Liquid Fe-S System
Earth Planet. Sci. Lett. 257, 230 (2016).
W. Voegeli, E. Arakawa, T. Matsushita, O. Sakata andY. Wakabayashi
Dynamical Response of the Electric Double Layer Structure of
the DEME-TFSI Ionic Liquid to Potential Changes Observed byTime-Resolved X-Ray Reflectivity
Z. Phys. Chemie-Int. 230, 577 (2016).
S. Ono and T. Kikegawa
Titanium Boride Equation of State determined by In-Situ X-Ray
Diffraction
Heliyon 2, e00220 (2016).
A. Suzuki
Pressure-Volume-Temperature Equation of State of -FeOOH to
11 GPa and 700 K
J. Mineral. Petrol. Sci. 111, 420 (2016).
S. Ono, T. Kikegawa, Y. Higo and Y. Tange
Precise Determination of the Phase Boundary between Coesite
and Stishovite in SiO2
Phys. Earth Planet. Inter. 264, 1 (2017).
NW2A
Y. Niwa, T. Sato, K. Ichiyanagi, K. Takahashi and M. Kimura
Time-Resolved Observation of Structural Change of Copper
Induced by Laser Shock using Synchrotron Radiation with
Dispersive XAFSHigh Press. Res., 36 (2016) 471.
H. Eba, H. Ooyama and K. Sakurai
Combination of Projection-Based XRF, XAFS and XRD
Imagings for Rapid Spatial Distribution Analysis of a
Heterogeneous Material
J. Anal. At. Spectrom. 31, 1105 (2016).
T. Shirasawa, W. Voegeli, E. Arakawa, T. Takahashi and
T. Matsushita
Structural Change of the Rutile-TiO2(110) Surface During the
Photoinduced Wettability Conversion
J. Phys. Chem. C 120, 29107 (2016).
Y. Miyamoto, T. Nasu, N. Ozaki, Y. Umeta, H. Tokoro
K. Nakabayashi and S. Ohkoshi
Photo-Induced Magnetization and First-Principles Calculationsof a Two-Dimensional Cyanide-Bridged Co-W Bimetal
Assembly
Dalton Trans. 45, 19249 (2016).
Z.-Y Li, H. Ohtsu, T. Kojima, J. -W. Dai, T. Yoshida,
B. K. Breedlove, W. -X. Zhang, H. Iguchi, O. Sato, M. Kawano
and M. Yamashita
Direct Observation of Ordered High-Spin-Low-Spin
Intermediate States of an Iron(III) Three-Step Spin-Crossover
ComplexAngew. Chem.-Int. Edit. 55, 5184 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
A. Watanabe, A. Kobayashi, E. Saitoh, Y. Nagao, S. Omagari,
T. Nakanishi, Y. Hasegawa, W. M. C. Sameera, M. Yoshida and
M. KatoDevelopment of Ion-Conductive and Vapoluminescent Porous
Coordination Polymers Composed of Ruthenium(II)Metalloligand
Inorg. Chem. 56, 3005 (2017).
NW10A
A. Itadani, A. Oda, H. Torigoe, T. Ohkubo, M. Sato,
H. Kobayashi and Y. Kuroda
Materials Exhibiting Efficient CO2 Adsorption at Room
Temperature for Concentrations Lower Than 1000 ppm:
Elucidation of the State of Barium Ion Exchanged in an MFIType Zeolite
ACS Appl. Mater. Interfaces 8, 8821 (2016).
Y. Inoue, M. Kitano, K. Kishida, H. Abe, Y. Niwa, M. Sasase,
Y. Fujita, H. Ishikawa, T. Yokoyama, M. Hara and H. Hosono
Efficient and Stable Ammonia Synthesis by Self-Organized Flat
Ru Nanoparticles on Calcium AmideACS Catal. 6, 7577 (2016).
Y. Shimoyama, T. Ishizuka, H. Kotani, Y. Shiota, K. Yoshizawa,
K. Mieda, T. Ogura, T. Okajima, S. Nozawa and T. Kojima
A Ruthenium(III)-Oxyl Complex Bearing Strong Radical
Character
Angew. Chem. Int. Ed. 55, 14041 (2016).

H. Abe, Y. Niwa, M. Kitano, Y. Inoue, Y. Murakami,
T. Yokoyama, M. Hara and H. Hosono
High Oxidation Tolerance of Ru Nanoparticles on 12CaO・
7Al2O3 Electride
J. Phys. Chem. C 120, 8711 (2016).
Y. Miyano, A. Yoshiasa, T. Tobase, H. Isobe, H. Hongu,
M. Okube, A. Nakatsuka and K. Sugiyama
Weathering and Precipitation after Meteorite Impact of Ni, Cr,
Fe, Ca and Mn in K-T Boundary Clays from Stevns Klint.
Journal of Physics: Conference Series 712, 012097 (2016).
J. B. Ernst, S. Muratsugu, F. Wang, M. Tada and F. Glorius
Tunable Heterogeneous Catalysis: N-Heterocyclic Carbenes as
Ligands for Supported Heterogeneous Ru/K-Al2O3 Catalysts To
Tune Reactivity and Selectivity
J. Am. Chem. Soc. 138, 10718 (2016).
K. Okumuraa, M. Nakanishia and H. Takabab
Direct Inclusion of Triphenylphosphine Derivatives into the
Zeolite Y Supercage
Microporous Mesoporous Mat. 241, 400 (2017).
T. Wada, N. Murata, H. Uehara, T. Suzuki, H. Nitani, Y. Niwa,
M. Uo and K. Asakura
Degradation Mechanism of a High-Performance Real Micro Gas
Sensor, as Determined by Spatially Resolved XAFS
Phys. Chem. Chem. Phys. 18, 7374 (2016).

T. Ohba, H. Kubo, Y. Ohshima, Y. Makita, N. Nakamura,
H. Uehara, S. Takakusagi and K. Asakura
An Origin for Lattice Expansion in PVP-Protected Small Pd
Metal Nanoparticles
Bull. Chem. Soc. Jpn. 13, 70 (2017).

B. Mongkhonsin, W. Nakbanpote, A. Hokura,
N. Nuengchamnong and S. Maneechai
Phenolic Compounds Responding to Zinc and/or Cadmium
Treatments in Gynura Pseudochina(L.) DC. Extracts andBiomass
Plant Physiology and Biochemistry 109, 549 (2016).

A. J. Samed, Y. Yamamoto, M. Hidaka, S. Hinokuma and
M. Machida
An Attempt to Stabilize Supported Ru Catalysts Against
Oxidative Volatilization
Catal. Commun. 91, 6 (2017).

T. Yamamoto, K. Hayashi, N. Happo and S. Hosokawa
X-Ray Fluorescence Holography for a Ti-Nb Binary Alloy
Consisting of the Martensite, Austenite and Omega Phase
Z. Phys. Chemie-Int. 230, 509 (2016).

J. Kim, N. Ichikuni, T. Hara and S. Shimazu
Study on the Selectivity of Propane Photo-Oxidation Reaction on
SBA-15 Supported Mo Oxide Catalyst
Catalysis Today 265, 90 (2016).

M. Harada and C. Cong
Microwave-Assisted Polyol Synthesis of Polymer-Protected
Monometallic Nanoparticles Prepared in Batch and ContinuousFlow Processing.
Ind. Eng. Chem. Res. 55, 5634 (2016).

A. Tyagi, T. Matsumoto, T. Katoab and H. Yoshida
Direct C-H Bond Activation of Ethers and Successive C-C Bond
Formation with Benzene by a Bifunctional Palladium-Titania
Photocatalyst
Catal. Sci. Technol. 6, 4577 (2016).
M. Harada and R. Ikegami
In Situ Quick X-ray Absorption Fine Structure and Small-Angle
X-Ray Scattering Study of Metal Nanoparticle Growth in Waterin-Oil Microemulsions during Photoreduction.
Cryst. Growth Des. 16, 2860 (2016).
S. Muratsugu, N. Maity, H. Baba, M. Tasakia and M. Tada
Preparation and Catalytic Performance of a Molecularly
Imprinted Pd Complex Catalyst for Suzuki Cross-Coupling
Reactions
Dalton Transactions 46, 3125 (2017).

K. Kamimura, S. Hosokawa, N. Happo, H. Ikemoto, Y. Sutou,
S. Shindo, Y. Saito and J. Koike
XAFS Analysis on Amorphous and Crystalline New Phase
Change Material GeCu2Te3
J. Optoelectron. Adv. Mater. 18, 248 (2016).
S. Ogawa, M. Katoh, C. Numako, K. Kitahara, S. Miyazaki and
T. SatoImmobilization of Antimony(III) in Oxic Soil using Combined
Application of Hydroxyapatite and Ferrihydrite
Water, Air, & Soil Pollution 227, 124 (2016).
S. Kawamura, H. Zhang, M. Tamba, T. Kojima, M. Miyano,
Y. Yoshida, M. Yoshiba and Y. Izumi
Efficient Volcano-Type Dependence of Photocatalytic CO2
Conversion into Methane using Hydrogen at Reaction Pressures
up to 0.80 MPa
Journal of Catalysis 345, 39 (2017).

Photon Factory Activity Report 2016 #34 (2017) B
T. Masuda and K. Uosaki
In Situ Determination of Electronic Structure at Solid/LiquidInterfaces
J. Electron Spectrosc. Relat. Phenom. 221, 88 (2017).

S. -H. Park, Y. -B. Kuk, J. -Y. Lee, B. -C. Jeong and H. K. Song
Structure Determination of the C-Terminal Fragment of Yeast
Ski7 using Twinned Crystal Data
Biodesign 5, 12 (2017).

T. Masuda, Y. Sun, H. Fukumitsu, H. Uehara, S. Takakusagi,
W. -J. Chun, T. Kondo, K. Asakura and K. Uosaki
Various Active Metal Species Incorporated within Molecular
Layers on Si(111) Electrodes for Hydrogen Evolution and CO2
Reduction Reactions
J. Phys. Chem. C 120, 16200 (2016).

T. Miyoshi, K. Ito, R. Murakami and T. Uchiumi
Structural Basis for the Recognition of Guide RNA and Target
DNA Heteroduplex by ArgonauteNat. Commun. 7, 1 (2016).

NW12A
Y. Ye, W. Saburi, R. Odaka, K. Kato, N. Sakurai, K. Komoda,
M. Nishimoto, M. Kitaoka, H. Mori and M. Yao
Structural Insights into the Difference in Substrate Recognitionof Two Mannoside Phosphorylases from Two GH130
Subfamilies
FEBS Lett. 590, 828 (2016).
T. Muramatsu, C. Takemoto, Y. -T. Kim, H. Wang, W. Nishii,
T. Terada, M. Shirouzua and S. Yokoyam
SARS-CoV 3CL Protease Cleaves its C-Terminal
Autoprocessing Site by Novel Subsite Cooperativity
Proc. Natl. Acad. Sci. U.S.A. 113, 12997 (2016).
C. Okada, H. Wakabayashi, M. Kobayashi, A. Shinoda,
I. Tanaka and M. Yao
Crystal Structures of the UDP-Diacylglucosamine
Pyrophosphohydrase LpxH from Pseudomonas AeruginosaSci. Rep. 6, 32822 (2016).
T. Tomita, S. -Y. Kim, K. Teramoto, A. Meguro, T. Ozaki,
A. Yoshida, Y. Motoyoshi, N. Mori, K. Ishigami, H. Watanabe,
M. Nishiyama and T. Kuzuyama
Structural Insights into the CotB2-Catalyzed Cyclization ofGeranylgeranyl Diphosphate to the Diterpene Cyclooctat-9-en-7ol.
ACS Chem. Biol. 12, 1621 (2017).

S. Fushinobu
Development of Aerobic Fermentation System using Edible
Waste Oil and Characteristics of Thermophilic Lipases
Life and Environment 61, 67 (2016).
M. Akter, C. Inoue, H. Komori, N. Matsuda, T. Sakurai,
K. Kataoka, Y. Higuchi and N. Shibata
Biochemical, Spectroscopic and X-Ray Structural Analysis ofDeuterated Multicopper Oxidase CueO Prepared from a New
Expression Construct for Neutron Crystallography
Biological Science 72, 788 (2016).
N. Kobayashi, N. Kimura and R. Arai
De Novo Proteins Created by Binary Pattern Strategy andSupramolecular Nanostructure Complexes Constructed fromProtein Nanobuiliding Blocks
Seibutsu-kogaku Kaishi 94, 485 (2016).
A. Yamasaki, Y. Watanabe, W. Adachi, K. Suzuki, K. Matoba,
H. Kirisako, H. Kumeta, H. Nakatogawa, Y. Ohsumi and
F. Inagaki
Structural Basis for Receptor-Mediated Selective Autophagy ofAminopeptidase I Aggregates
Cell Reports 16, 19 (2016).
A. Miyanaga, F. Kudo and T. Eguchi
Mechanisms of -Amino Acid Incorporation in Polyketide
Macrolactam Biosynthesis
Current Opinion in Chemical Biology 35, 58 (2016).

Y. Aikawa, Y. Nishitani, H. Tomita, H. Atomi and K. Miki
Crystal Structure of Ketopantoate Reductase from Thermococcus
kodakarensis Complexed with NADP+
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 72, 369 (2016).

K. Takahashi, F. Nakanishi, T. Tomita, N. Akiyama, K. Lassak,
S. -V. Albers, T. Kuzuyama and M. Nishiyama
Characterization of Two b-Decarboxylating Dehydrogenases
from Sulfolobus Acidocaldarius
Extremophiles 20, 843 (2016).

A. Ohno, A. Ochi, N. Maita, T. Ueji, A. Bando, R. Nakao,
K. Hirasaka, T. Abe, S. Teshima-Kondo, H. Nemoto,Y. Okumura, A. Higashibata, S. Yano, H. Tochio and T. Nikawa
Structural Analysis of the TKB Domain of Ubiquitin Ligase
Cbl-b Complexed with its Small Inhibitory Peptide, Cblin
Arch. Biochem. Biophys. 594, 1 (2016).

C. Suzuki-Minakuchi, K. Kawazuma, J. Matsuzawa,D. Vasileva, Z. Fujimoto, T. Terada, K. Okada and H. Nojiri
Structural Similarities and Differences in H-NS Family Proteins
Revealed by the N-Terminal Structure of TurB in Pseudomonas
Putida KT2440
FEBS Lett. 590, 3583 (2016).

T.Akiyama, M. Ishii, A. Takuwa, K. Oinuma, Y. Sasaki,
N.Takaya, S. Yajima
Structural Basis of the Substrate Recognition of Hydrazidase
Isolated from Microbacterium sp. Strain HM58-2, Which
Catalyzes Acylhydrazide Compounds as its Sole Carbon Source
Biochem. Biophys. Res. Commun. 482, 1007 (2017).

H. -M. Qin, T. Miyakawa, A. Inoue, R. Nishiyama,
A. Nakamura, A. Asano, Y. Sawano, T. Ojima and M. Tanokura
Structure and Polymannuronate Specificity of a Eukaryotic
Member of Polysaccharide Lyase Family 14.
J. Biol. Chem. 292, 2182 (2017).

M. Okai, A. Yamamura, K. Hayakawa, S. Tsutsui, K. Miyazono,
W. -C. Lee, K. Nagata, Y. Inoue and M. Tanokura
Insight into the Transition between the Open and Closed
Conformations of Thermus Thermophilus Carboxypeptidase.
Biochem. Biophys. Res. Commun. 484, 787 (2017).

Photon Factory Activity Report 2016 #34 (2017) B
Y. Takemoto, A. Ito, H. Niwa, M. Okamura, T. Fujiwara,
T. Hirano, N. Handa, T. Umehara, T. Sonoda, K. Ogawa,M. Tariq, N. Nishino, S. Dan, H. Kagechika, T. Yamori,S. Yokoyama and M. Yoshida
Identification of Cyproheptadine as an Inhibitor of SET Domain
Containing Lysine Methyltransferase 7/9 (Set7/9) that Regulates
Estrogen-Dependent Transcription
J. Med. Chem. 59, 3650 (2016).
T. Miyazaki, A. Nishikawa and T. Tonozuka
Crystal Structure of the Enzyme-Product Complex Reveals
Sugar Ring Distortion during Catalysis by Family 63 Inverting-Glycosidase
J. Struct. Biol. 196, 479 (2016).
K. -g. Hyun, J. E. Oh, J. Park, Y. -S. Noh and J. -J. Song
Structural Analysis of FRIGIDA Flowering-Time Regulator
Mol. Plant 9, 18 (2016).
M. K. Kim, S. J. Oh, B. G. Lee and H. K. Song
Structural Basis for Dual Specificity of Yeast N-Terminal
Amidase in the N-End Rule Pathway
Proc. Natl. Acad. Sci. U.S.A. 113, 12438 (2016).
N. Adachi, T. Senda and M. Horikoshi
Uncovering Ancient Transcription Systems with a Novel
Evolutionary Indicator
Sci. Rep. 6, 27922 (2016).
K. Yamada, K. Yokomaku, M. Kureishi, M. Akiyama, K. Kihira
and T. Komatsu
Artificial Blood for Dogs
Sci. Rep. 6, 36782 (2016).
Y. Nishitani, J.-R. Simons, T. Kanai, H. Atomi and K. Miki
Crystal Structure of the TK2203 Protein from Thermococcus
Kodakarensis, a Putative Extradiol Dioxygenase
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 72, 427 (2016).
J. Wachino, Y. Yamaguchi, S. Mori, W. Jin, K. Kimura,
H. Kurosaki and Y. Arakawa
Structural Insights into Recognition of Hydrolyzed Carbapenems
and Inhibitors by Subclass B3 Metallo--Lactamase SMB-1
Antimicrob Agents Chemother, 60 (2016) 4274.
H. Yoshida, A. Yoshihara, T. Ishii, K. Izumori and S. Kamitori
X-Ray Structures of the Pseudomonas Cichorii D-Tagatose 3Epimerase Mutant form C66S Recognizing Deoxy Sugars
Appl. Microbiol. Biotechnol. 100, 10403 (2016).
Y. Nishigaya, Z. Fujimoto and T. Yamazaki
Optimized Inhibition Assays Reveal Different Inhibitory
Responses of Hydroxylamine Oxidoreductases from Beta- andGamma-Proteobacterial Ammonium-Oxidizing Bacteria
Biochem. Biophys. Res. Commun. 476, 127 (2016).
K. Takahashi, T. Tomita, T. Kuzuyama and M. Nishiyama
Determinants of Dual Substrate Specificity Revealed by the
Crystal Structure of Homoisocitrate Dehydrogenase from
Thermus Thermophilus in Complex with Homoisocitrate・
Mg2+・NADH.
Biochem. Biophys. Res. Commun. 478, 1688 (2016).

J. J. Lim, Y. Lee, T. T. Ly, J. Y. Kang, J. -G. Lee, J. Y. An,
H. -S. Youn, K. R. Park, T. G. Kim, J. K. Yang, Y. Jun and
S. H. Eom
Structural Insights into the Interaction of p97 N-Terminus
Domain and VBM in Rhomboid Protease, RHBDL4Biochem. J. 473, 2863 (2016).
T. Shimizu, L. Yin, A. Yoshida, Y. Yokooji, S. Hachisuka,
T. Sato, T. Tomita, H. Nishida, H. Atomi, T. Kuzuyama andM. Nishiyama
Structure and Function of an Ancestral-Type -Decarboxylating
Dehydrogenase from Thermococcus Kodakarensis
Biochem. J. 474, 105 (2017).
S. Fudo, N. Yamamoto, M. Nukaga, T. Odagiri, M. Tashiro andT. Hoshino
Two Distinctive Binding Modes of Endonuclease Inhibitors to
the N-Terminal Region of Influenza Virus Polymerase Acidic
Subunit
Biochemistry 55, 2646 (2016).
J. J. Lim, Y. Lee, S. Y. Yoon, T. T. Ly, J. Y. Kang, H. -S. Youn,
J. Y. An, J. -G. Lee, K. R. Park, T. G. Kim, J. K. Yang, Y. Jun
and S. H. Eom
Structural Insights into the Interaction of Human p97 N-Terminal
Domain and SHP Motif in Derlin-1 Rhomboid Pseudoprotease
FEBS Lett. 590, 4402 (2016).
S. Takahashi, K. Shimada, S. Nozawa, M. Goto, K. Abe and
Y. KeraPossible Role of a Histidine Residue in the Substrate Specificity
of Yeast D-Aspartate Oxidase
J. Biochem. 159, 371 (2016).
M. Hayashi, R. Suzuki, C. Colleoni, S. G. Ball, N. Fujita andE. Suzuki
Bound Substrate in the Structure of Cyanobacterial Branching
Enzyme Supports a New Mechanistic Model
J. Biol. Chem. 292, 5465 (2017).
M. Nagae, T. Hirata, K. Morita-Matsumoto, R. Theiler,
M. Fujita, T. Kinoshita and Y. Yamaguchi
3D Structure and Interaction of p24b and p24d Golgi Dynamics
Domains: Implication for p24 Complex Formation and Cargo
Transport.
J. Mol. Biol. 428, 4087 (2016).
T. Oyama, S. Ishino, T. Shirai, T. Yamagami, M. Nagata,
H. Ogino, M. Kusunoki and Y. Ishino
Atomic Structure of an Archaeal GAN Suggests its Dual Roles
as an Exonuclease in DNA Repair and a CMG Component in
DNA Replication
Nucl. Acids Res. 44, 9505 (2016).
H. Unno, K. Matsuyama, Y. Tsuji, S. Goda, K. Hiemori,H. Tateno, J. Hirabayashi and T. Hatakeyama
Identification, Characterization, and X-Ray Crystallographic
Analysis of a Novel Type of Mannose-Specific Lectin CGL1
from the Pacific Oyster Crassostrea Gigas
Sci. Rep. 6, 29135 (2016).
Y. Hirato, M. Goto, M. Tokuhisa, M. Tanigawa andK. Nishimura
Crystallization and X-Ray Analysis of D-Threonine Aldolasefrom Chlamydomonas reinhardtii.
Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 73, 86 (2017).

Photon Factory Activity Report 2016 #34 (2017) B
T. Yamamoto, Y. Tsunematsu, K. Hara, T. Suzuki, S. Kishimoto,
H. Kawagishi, H. Noguchi, H. Hashimoto, Y. Tang, K. Hotta andK. Watanabe
Oxidative Trans to Cis Isomerization of Olefins in Polyketide
Biosynthesis
Angew. Chem. Int. Ed. 55, 6207 (2016).
Z. Yan, A. Maruyama, T. Arakawa, S. Fushinobu and T. Wakagi
Crystal Structures of Archaeal 2-Oxoacid:Ferredoxin
Oxidoreductases from Sulfolobus tokodaii
Sci. Rep. 6, 33061 (2016).
T. Yamaguchi, K. Akao, A. Takashina, S. Asamura, M. Unno,
R. K. Szilagyi and T. Kohzuma
X-Ray Crystallographic Evidence for the Simultaneous Presenceof Axial and Rhombic Sites in Cupredoxins: Atomic Resolution
X-Ray Crystal Structure Analysis of Pseudoazurin and DFT
Modelling
RSC Advances 6, 88358 (2016).
T. Matsuzawa, T. Jo, T. Uchiyama, J. A. Manninen, T. Arakawa,T. Arakawa, S. Fushinobu and K. Yaoi
Crystal Structure and Identification of a Key Amino Acid for
Glucose Tolerance, Substrate Specificity and Transglycosylation
Activity of Metagenomic -Glucosidase Td2F2
FEBS J. 283, 2340 (2016).
S. Saijo, A. Nagai, S. Kinjo, R. Mashimo, M. Akimoto,
K. Kizawa, T. Yabe-Wada, N. Shimizu, H. Takahara and
M. UnnoMonomeric Form of Peptidylarginine Deiminase Type I
Revealed by X-Ray Crystallography and Small-Angle X-Ray
Scattering
J. Mol. Biol. 428, 3058 (2016).
S. Fudo, F. Qi, M. Nukaga and T. Hoshino
Influence of Precipitants on Molecular Arrangement and SpaceGroup of Protein Crystals
Cryst. Growth Des. 17, 534 (2017).
M. Nagae, A. Ikeda, S. Hanashima, T. Kojima, N. Matsumoto,K. Yamamoto and Y. Yamaguchi
Crystal Structure of Human Dendritic Cell Inhibitory Receptor
C-Type Lectin Domain Reveals the Binding Mode with NGlycan
FEBS Lett. 590, 1280 (2016).
Y. Anami, N. Shimizu, T. Ekimoto, D. Egawa, T. Itoh,
M. Ikeguchi and K. Yamamoto
Apo- and Antagonist-Binding Structures of Vitamin D Receptor
Ligand-Binding Domain Revealed by Hybrid Approach
Combining Small-Angle X-Ray Scattering and Molecular
Dynamics
J. Med. Chem. 59, 7888 (2016).
T. Mori, L. Zhang, T. Awakawa, S. Hoshino, M. Okada,
H. Morita and I. Abe
Manipulation of Prenylation Reactions by Structure-BasedEngineering of Bacterial Indolactam Prenyltransferases
Nat. Commun. 7, 10849 (2016).

A. Miyanaga, S. Iwasawa, Y. Shinohara, F. Kudo and T. Eguchi
Structure-Based Analysis of the Molecular Interactions between
Acyltransferase and Acyl Carrier Protein in Vicenistatin
Biosynthesis
Proc. Natl. Acad. Sci. U.S.A. 113, 1802 (2016).
S. Kudo, JM. Caaveiro and K. Tsumoto
Adhesive Dimerization of Human P-Cadherin Catalyzed by a
Chaperone-like Mechanism
Structure 24, 1523 (2016).
L. -J. Yu, T. Kawakami, Y. Kimura and Z. -Y. Wang-Otomo
Structural Basis for the Unusual Qy Red-Shift and Enhanced
Thermostability of the LH1 Complex from Thermochromatium
Tepidum
Biochemistry 55, 6495 (2016).
K. Yoneda, Y. Fukuda and T. Araki
Crystal Structure Analysis of Extremely Thermostable Carbonyl
Reductase and Structural Basis for Substrate Recognition
Proc. of School of Agri. Tokai Univ. 36, 1 (2017).
NW14A
Y. Uemura, D. Kido, A. Koide, Y. Wakisaka, Y. Niwa,
S. Nozawa, K. Ichiyanagi, R. Fukaya, S. Adachi, T. Katayama,
T.Togashi, S. Owada, M.Yabashi, K. Hatada, A. Iwase, A. Kudo,
S. Takakusagi, T. Yokoyama and K. Asakura
Capturing Local Structure Modulations of Photoexcited BiVO4
by Ultrafast Transient X-Ray Absorption Fine Structure
Spectroscopy
Chem. Commun. 53, 7314 (2017).
K. H. Kim, J. G. Kim, K. Y. Oang, T. W. Kim, H. Ki, J. Jo,
J. Kim, T. Sato, S. Nozawa, S. Adachi and H. Ihee
Femtosecond X-Ray Solution Scattering Reveals that Bond
Formation Mechanism of a Gold Trimer Complex is Independentof Excitation Wavelength
Structural Dynamics 3, 43209 (2016).
S. Nozawa
Visualization of the Birth of Molecules by XFEL
Jpn. J. Opt. 45, 432 (2016).
SPF
Y. Fukaya, I. Matsuda, B. Feng, I. Mochizuki, T. Hyodo and
S. Shamoto
Asymmetric structure of Germanene on an Al(111) Surface
Studied by Total-Reflection High-Energy Positron Diffraction
2D Materials 3, 35019 (2016).
Y. Fukaya, S. Entani, S. Sakai, I. Mochizuki, K. Wada, T. Hyodo
and S. Shamoto
Spacing Between Graphene and Metal Substrates Studied with
Total-Reflection High-Energy Positron Diffraction
Carbon 103, 1 (2016).
S. Iida, K. Wada, I. Mochizuki, T. Tachibana, T. Yamashita,
T. Hyodo and Y. Nagashima
Emission of Low-Energy Positronium from Alkali-Metal Coated
Single-Crystal Tungsten Surfaces
J. Phys.: Condens. Matter. 28, 475002 1 (2016).

Photon Factory Activity Report 2016 #34 (2017) B
I. Mochizuki, H. Ariga, Y. Fukaya, K. Wada, M. Maekawa,A. Kawasuso, T. Shidara, K. Asakura and T. Hyodo
Total-Reflection High-Energy Positron Diffraction (TRHEPD)
Structural Determination of the Rutile-TiO2(110)-(1 x 2) Surface
J. Surf. Sci. Soc. Jpn. 37, 451 (2016).
K. Michishio, T. Kanai, S. Kuma, T. Azuma, K. Wada,
I. Mochizuki, T. Hyodo, A. Yagishita and Y. Nagashima
Observation of a Shape Resonance of the Positronium Negative
Ion
Nat. Commun. 7, 11060 (2016).
T. Yamashita, S. Iida, H. Terabe and Y. Nagashima
Thermal Positron Interactions with Alkali Covered Tungsten
Nucl. Instr. Meth. Phys. Res. B 387, 115 (2016).