PSC Publications 2000 – 2012001

Estevez J, Cantero A, Romero C, Kawaide H, Jimenez L, Kuzuyama T, Seto H, Kamiya Y, Leon P, "Analysis of the expression of CLA1, a gene that encodes the 1-deoxyxylulose 5-phosphate synthase of the 2-C-methyl-D-erythritol-4-phosphatepathway in Arabidopsis" Plant Physiology 124 95-103 (2000)

002

Fukazawa J, Sakai T, Ishida S, Yamaguchi I, Kamiya Y, Takahashi Y, "Repression of Shoot Growth, a bZIP transcriptional
activator, regulates cell elongation by controlling the level ofgibberellins" The Plant Cell 12 901-915 (2000)

003

Fukuda H, "Programmed cell death of tracheary elements as aparadigm in plants" Plant Molecular Biology 44 245-253 (2000)

004

Ghassemian M, Nambara E, Cutler S, Kawaide H, Kamiya Y,
McCourt P, "Regulation of abscisic acid signaling by the ethylene response pathway in Arabidopsis" The Plant Cell 12 11171126 (2000)

005
006

007

008

009

010

011

012

016

017

018

Jones R, Harberd N, Kamiya Y, "Gibberellins 2000" Trends in
Plant Science 5 320-321 (2000)
Min X, Okada K, Brockmann B, Koshiba T, Kamiya Y, "Molecular cloning and expression patterns of three putative functional aldehyde oxidase genes and isolation of two aldehydeoxidase pseudogenes in tomato" Biochimica et Biophysica
Acta 1493 337-341 (2000)
Nakashima J, Takabe K, Fujita M, Fukuda H, "Autolysis duringin vitro tracheary element differentiation: Formation and location of the perforation" Plant Cell Physiology 41 1267-1271(2000)
Nambara E, Hayama R, Tsuchiya Y, Nishimura M, Kawaide H,
Kamiya Y, Naitou S, "The role of ABI3 and FUS3 loci in Arabidopsis thaliana on phase transition from late embryo development to germination" Developmental Biology 220 412-423(2000)
Sang S, Lao A, Chen Z, Uzawa J, Fujimoto Y, "Three new triterpenoid saponins from the seeds of Vaccaria segetalis" Jounal
of Asian Natural Products Research 2 187-193 (2000)
Sang S, Lao A, Leng Y, Gu Z, Chen Z, Uzawa J, Fujimoto Y,"Segetoside F a new triterpenoid saponin with inhibition ofluteal cell from the seeds of Vaccaria segetalis" Tetrahedron
Letters 41 9205-9207 (2000)

019

020

021

022

Seo M, Peeters A, Koiwai H, Oritani T, Marion-Poll A, Zeevaart
J, Koornneef M, Kamiya Y, Koshiba T, "The Arabidopsis aldehyde oxidase 3 (AAO3) gene product catalyzes the final stepin abscisic acid biosynthesis in leaves" Proceedings of the National Academy of Sciences of the United States of America 97
12908-12913 (2000)
Sugiyama M, Ito J, Aoyagi S, Fukuda H, "Endonucleases" Plant
Molecular Biology 44 387-397 (2000)

014

Arai Y, Nakashita H, Doi Y, Yamaguchi I, "Plastid targeting ofpolyhydroxybutyrate biosynthetic pathway in tobacco" Plant
Biotechnology 18 289-293 (2001)
Asami T, Mizutani M, Fujioka S, Goda H, Min Y, Shimada Y,

Bhaya D, Takahashi A, Grossman A, "Light regulation of typeIV pilus-dependent motility by chemosensor-like elements in
Synechocystis PCC6803" Proceedings of the National Academy of Sciences of the United States of America 98 7540-7545(2001)
Bhaya D, Takahashi A, Shahi P, Grossman A, "Novel motility
mutants of Synechocystis strain PCC 6803 generated by invitro transposon mutagenesis" Journal of Bacteriology 183
6140-6143 (2001)
Brockmann B, Smith M, Zarainsky A, Harrison K, Okada K,
Kamiya Y, "Subcellular localization and targeting of glucocorticoid receptor protein fusions expressed in transgenic Arabidopsis thaliana" Plant Cell Physiology 42 942-951 (2001)
Eckardt N, Araki T, Benning C, Cubas P, Goodrich J, Jacobsen
S, Masson P, Nambara E, Simon R, Somerville S, Wasteneys
G, "Arabidopsis research 2001" The Plant Cell 13 1973-1982(2001)

Endo S, Demura T, Fukuda H, "Inhibition of proteasome activity by the TED4 protein in extracellular space: A novel mechanism for protection of living cells from injury caused by dying
cells" Plant Cell Physiology 42 9-19 (2001)
Grossman A, Takahashi H, "Macronutrient utilization by photosynthetic eukaryotes and the fabric of interactions" Annual
Review of Plant Physiology Plant Molecular Biology 52 163210 (2001)
Hamamoto H, Hasegawa K, Nakaune R, Lee Y, Akutsu K, Hibi
T, "PCR-based detection of sterol demethylation inhibitorresistant strains of Penicillium digitatum" Pest Management
Science 57 839-843 (2001)024

Hamamoto H, Nawata O, Hasegawa K, Nakaune R, Lee Y,
Makizumi Y, Akutsu K, Hibi T, "The role of the ABC transporter gene PMR1 in demethylation inhibitor resistance in Penicillium digitatum" Pesticide Biochemistry and Physiology 70 1926 (2001)

025

028

Maruyama-Nakashita A, Saito K, Ishizawa K, "β-Cyanoalaninesynthase and cysteine synthase from potato: Molecular cloning, biochemical characterization, and spatial and hormonal
regulation" Plant Molecular Biology 46 749-760 (2001)

041

Obara M, Kajiura M, Fukuta Y, Yano M, Hayashi M, Yamaya T,
Sato T, "Mapping of QTLs associated with cytosolic glutaminesynthetase and NADH‐glutamate synthase in rice (Oryza sativa L.)" Journal of Experimental Botany 52 1209-1217 (2001)

029

Matsuoka K, Schekman R, Orci L, Heuser J, "Surface structureof the COPII-coated vesicle" Proceedings of the National Academy of Sciences of the United States of America 98 1370513709 (2001)

042

030

Motose H, Sugiyama M, Fukuda H, "An arabinogalactan
protein(s) is a key component of a fraction that mediates local intercellular communication involved in tracheary element
differentiation of zinnia mesophyll cells" Plant Cell Physiology
42 129-137 (2001)

Oikawa H, Toyomasu T, Toshima H, Ohashi S, Kawaide H, Kamiya Y, Ohtsuka M, Shinoda S, Mitsuhashi W, Sassa T, "Cloning
and functional expression of cDNA encoding aphidicolan-16β-ol synthase: A key enzyme responsible for formation of an
unusual diterpene skeleton in biosynthesis of aphidicolin"
Journal of the American Chemical Society 123 5154-5155(2001)

043

Ozaki T, Ambe S, Minai Y, Enomoto S, Yatagai F, Abe T, Yoshida S, Makide Y, "Effects of ionic valency of interacting
metal elements in ion uptake by carrot (Daucas carota cv. U.S.
harumakigosun)" Biological Trace Element Research 84 197211 (2001)

044

Saijo Y, Kinoshita N, Ishiyama K, Hata S, Kyozuka J, Hayakawa
T, Nakamura T, Shimamoto K, Yamaya T, Izui K, "A Ca2+-dependent protein kinase that endows rice plants with cold- andsalt-stress tolerance functions in vascular bundles" Plant Cell
Physiology 42 1228-1233 (2001)

045

Saikawa Y, Okamoto H, Inui T, Makabe M, Okuno T, Suda
T, Hashimoto K, Nakata M, "Toxic principles of a poisonous
mushroom Podostroma cornu-damae" Tetrahedron 57 82778281 (2001)

046

Sakai T, Kagawa T, Kasahara M, Swartz T, Christie J, Briggs W,
Wada M, Okada K, "Arabidopsis nph1 and npl1: Blue light
receptors that mediate both phototropism and chloroplast
relocation" Proceedings of the National Academy of Sciencesof the United States of America 98 6969-6974 (2001)

047

Sakurai N, Katayama Y, Yamaya T, "Overlapping expression ofcytosolic glutamine synthetase and phenylalanine ammonialyase in immature leaf blades of rice" Physiologia Plantarum
113 400-408 (2001)

048

Shimada Y, Fujioka S, Miyauchi N, Kushiro M, Takatsuto S,
Nomura T, Yokota T, Kamiya Y, Bishop G, Yoshida S, "Brassinosteroid-6-oxidases from Arabidopsis and tomato catalyze
multiple C-6 oxidations in brassinosteroid biosynthesis" Plant
Physiology 126 770-779 (2001)049

Shimada Y, Ohbayashi M, Nakano-Shimada R, Okinaka Y, Kiyokawa S, Kikuchi Y, "Genetic engineering of the anthocyanin
biosynthetic pathway with flavonoid-3',5'-hydroxylase: specific switching of the pathway in petunia" Plant Cell Reports
20 450-462 (2001)

050

Silverstone A, Jung H, Dill A, Kawaide H, Kamiya Y, Sun T, "Repressing a repressor: Gibberellin-induced rapid reduction of
the RGA protein in Arabidopsis" The Plant Cell 13 1555-1565(2001)

051

Someya N, Nakajima M, Hirayae K, Hibi T, Akutsu K, "Synergistic antifungal activity of chitinolytic enzymes and prodigiosin
produced by biocontrol bacterium, Serratia marcescens strain
B2 against gray mold pathogen, Botrytis cinerea" Journal of
General Plant Pathology 67 312-317 (2001)

052

Suzuki H, Nakayama T, Sakakibara K, Fukui Y, Nakamura N,
Nakao M, Tanaka Y, Yamaguchi M, Kusumi T, Nishino T, "Malonyl-CoA:Anthocyanin 5-O-glucoside-6'''-O-malonyltransfer-

031

Motose H, Sugiyama M, Fukuda H, "Cell-cell interactions during vascular development" Journal of Plant Research 114 473481 (2001)

032

Nagata N, Asami T, Yoshida S, "Brassinazole, an inhibitor ofbrassinosteroid biosynthesis, inhibits development of secondary xylem in cress plants (Lepidium sativum)" Plant and Cell
Physiology 42 1006-1011 (2001)

033

Nagatsuka Y, Kasama T, Ohashi Y, Uzawa J, Ono Y, Shimizu K,
Hirabayashi Y, "A new phosphoglycerolipid, 'phosphatidylglucose', found in human cord red cells by multi-reactive monoclonal anti-i cold agglutinin, mAb GL-1/GL-2" FEBS Letters 497
141-147 (2001)

034

Nakajima N, Hiradate S, Fujii Y, "Plant growth inhibitory activity of L-canavanine and its mode of action" Journal of Chemical Ecology 27 19-31 (2001)

035

Nakashita H, Arai Y, Shikanai T, Doi Y, Yamaguchi I, "Introduction of bacterial metabolism into higher plants by polycistronic transgene expression" Bioscience Biotechnology andBiochemistry 65 1688-1691 (2001)

Eizuka T, Sato T, Chida T, Yamaguchi I, "Simple method formonitoring the sensitivity of Pyricularia oryzae to fthalide"
Journal of Pesticide Science 26 385-389 (2001)

023

Seo M, Koiwai H, Akaba S, Komano T, Oritani T, Kamiya Y,
Koshiba T, "Abscisic aldehyde oxidase in leaves of Arabidopsis
thaliana" The Plant Journal 23 481-488 (2000)

013

015

Nakano T, Takatsuto S, Matsuyama T, Nagata N, Sakata K,
Yoshida S, "Selective interaction of triazole derivatives with
DWF4, a cytochrome P450 monooxygenase of the brassinosteroid biosynthetic pathway, correlates with brassinosteroid
deficiency in Planta" The Journal of Biological Chemistry 276
25687-25691 (2001)

Kagawa T, Sakai T, Suetsugu N, Oikawa K, Ishiguro S, Kato T,
Tabata S, Okada K, Wada M, "Arabidopsis NPL1: A phototropin homolog controlling the chloroplast high-light avoidance
response" Science 291 2138-2141 (2001)026

Kim H, Yamaguchi I, Cho K, "The secondary effects of Pencycuron on the formation of giant protoplasts and the lipid
peroxidation of Rhizoctonia solani AG4" The Plant Pathology
Journal 17 36-39 (2001)

027

Kimura M, Anzai H, Yamaguchi I, "Microbial toxins in plantpathogen interactions: Biosynthesis, resistance mechanisms,
and significance" The Journal of General and Applied Microbiology 47 149-160 (2001)

036

037

038

039

040

Nakayama T, Sato T, Fukui Y, Sakakibara K, Hayashi H, Tanaka
Y, Kusumi T, Nishino T, "Specificity analysis and mechanism ofaurone synthesis catalyzed by aureusidin synthase, a polyphenol oxidase homolog responsible for flower coloration" FEBS
Letters 499 107-111 (2001)
Nishitani C, Demura T, Fukuda H, "Primary phloem-specificexpression of a Zinnia elegans homeobox gene" Plant Cell
Physiology 42 1210-1218 (2001)
Noji M, Takagi Y, Kimura N, Inoue K, Saito M, Horikoshi M,
Saito F, Takahashi H, Saito K, "Serine acetyltransferase involved in cysteine biosynthesis from spinach: Molecular cloning, characterization and expression analysis of cDNA encoding a plastidic isoform" Plant Cell Physiology 42 627-634 (2001)
Nomura T, Sato T, Bishop G, Kamiya Y, Takatsuto S, Yokota
T, "Accumulation of 6-deoxocathasterone and 6-deoxocastasterone in Arabidopsis, pea and tomato is suggestive ofcommon rate-limiting steps in brassinosteroid biosynthesis"
Phytochemistry 57 171-178 (2001)
Obara K, Kuriyama H, Fukuda H, "Direct evidence of active
and rapid nuclear degradation triggered by vacuole rupture
during programmed cell death in zinnia" Plant Physiology 125
615-626 (2001)

PSC Publications 2000 – 2012

Okamura Y, Sassa N, Suzuki S, Yazaki J, Kikuchi S, Fukuda H,"Visualization by comprehensive microarray analysis of gene
expression programs during transdifferentiation of mesophyll
cells into xylem cells" Proceedings of the National Academyof Sciences of the United States of America 99 15794-15799(2002)

ase from scarlet sage (Salvia splendens) flowers" The Journalof Biological Chemistry 276 49013-49019 (2001)

053

054

055

056

057

058

059

060

061

062

063

064

065

Takahashi H, Braby C, Grossman A, "Sulfur economy and cellwall biosynthesis during sulfur limitation of Chlamydomonas
reinhardtii" Plant Physiology 127 665-673 (2001)
Takei K, Sakakibara H, Sugiyama T, "Identification of genes
encoding adenylate isopentenyltransferase, a cytokinin biosynthesis enzyme, in Arabidopsis thaliana" The Journal of
Biological Chemistry 276 26405-26410 (2001)
Takei K, Sakakibara H, Tanigutchi M, Sugiyama T, "Nitrogendependent accumulation of cytokinins in root and the translocation to leaf: Implication of cytokinin species that induces
gene expression of maize response regulator" Plant and Cell
Physiology 42 85-93 (2001)

066

067

068

Tobin A, Yamaya T, "Cellular compartmentation of ammonium assimilation in rice and barley" Journal of Experimental
Botany 52 591-604 (2001)
Yamada H, Suzuki T, Terada K, Takei K, Ishikawa K, Miwa K,
Yamashino T, Mizuno T, "The Arabidopsis AHK4 histidine kinase is a cytokinin-binding receptor that transduces cytokinin
signals across the membrane" Plant and Cell Physiology 42
1017-1023 (2001)
Yamaguchi S, Kamiya Y, Sun T, "Distinct cell-specific expression
patterns of early and late gibberellin biosynthetic genes during Arabidopsis seed germination" The Plant Journal 28 443453 (2001)
Yamaguchi T, Fukada-Tanaka S, Inagaki Y, Saito N, Sakakibara
K, Tanaka Y, Kusumi T, Iida S, "Genes encoding the vacuolar
Na+/H+ exchanger and flower coloration" Plant Cell Physiology 42 451-461 (2001)
Yamamoto R, Fujioka S, Demura T, Takatsuto S, Yoshida S,
Fukuda H, "Brassinosteroid levels increase drastically prior tomorphogenesis of tracheary elements" Plant Physiology 125
556-563 (2001)

069

070

071

072

Ambe S, Sekido S, Ozaki T, Yamaguchi I, "Uptake of trace elements by rice plants inoculated with Pyricularia oryzae" Applied Radiation and Isotopes 56 473-476 (2002)
Asahina M, Iwai H, Kikuchi A, Yamaguchi S, Kamiya Y, Kamada H, Satoh S, "Gibberellin produced in the cotyledon isrequired for cell division during tissue reunion in the cortex of
cut cucumber and tomato hypocotyls" Plant Physiology 129
201-210 (2002)
Cheng W, Endo A, Zhou L, Penney J, Chen H, Arroyo A, Leon
P, Nambara E, Asami T, Seo M, Koshiba T, Sheen J, "A unique
short-chain dehydrogenase/reductase in Arabidopsis glucose
signaling and abscisic acid biosynthesis and functions" The
Plant Cell 14 2723-2743 (2002)
Deji A, Sakakibara H, Okumura S, Matsuda T, Ishida Y, Yamada
S, Komari T, Kubo T, Yamaya T, Sugiyama T, "Accumulationof maize response regulator proteins in mesophyll cells after
cytokinin treatment" Bioscience Biotechnology and Biochemistry 66 1853-1858 (2002)
Demura T, Tashiro G, Horiguchi G, Kishimoto N, Kubo M,
Matsuoka N, Minami A, Nagata-Hiwatashi M, Nakamura K,

073

Endo M, Matsubara H, Kokubun T, Masuko H, Takahata Y,
Tsuchiya T, Fukuda H, Demura T, Watanabe M, "The advantages of cDNA microarray as an effective tool for identification of reproductive organ-specific genes in a model legume,Lotus japonicus" FEBS Letters 514 229-237 (2002)
Goda H, Shimada Y, Asami T, Fujioka S, Yoshida S, "Microarray
analysis of brassinosteroid-regulated genes in Arabidopsis"
Plant Physiology 130 1319-1334 (2002)
Hashimoto K, Matsumoto T, Nakamura K, Ohwada S, Ohuchi T,
Horikawa M, Konno K, Shirahama H, "Molecular orbital calculation for the model compounds of kainoid amino acids, agonists of excitatory amino acid receptors. Does the kainoid C4substituent directly interact with the receptors?" Bioorganic &Medicinal Chemistry 10 1373-1379 (2002)
Hatakeyama T, Matsuo N, Aoyagi H, Sugawara H, Uchida T,
Kurisu G, Kusunoki M, "Crystallization and preliminary crystallographic study of an invertebrate C-type lectin, CEL-I, fromthe marine invertebrate Cucumaria echinata" Acta Crystallographica Section D 58 143-144 (2002)
Hatakeyama T, Matsuo N, Shiba K, Nishinohara S, Yamasaki
N, Sugawara H, Aoyagi H, "Amino acid sequence and carbohydrate-binding analysis of the N-acetyl-D-galactosamine-specific C-type lectin, CEL-I, from the holothuroidea, Cucumariaechinata" Bioscience Biotechnology and Biochemistry 66 157163 (2002)
Hayashi M, Nito K, Takei-Hoshi R, Yagi M, Kondo M, Suenaga A,
Yamaya T, Nishimura M, "Ped3p is a peroxisomal ATP-binding
cassette transporter that might supply substrates for fatty acid
β -oxidation" Plant Cell Physiology 43 1-11 (2002)
Higashibayashi S, Hashimoto K, Nakata M, "Synthetic studies
on the thiostrepton family of peptide antibiotics: synthesis of
the tetrasubstituted dehydropiperidine and piperidine cores"
Tetrahedron Letters 43 105-110 (2002)
Higashibayashi S, Mori T, Shinko K, Hashimoto K, Nakata M,"Synthetic studies on thiostrepton family of peptide antibiotics: Synthesis of the tetrasubstituted dihydroquinoline portionof siomycin D1" Heterocycles 57 111-122 (2002)

074

Ito J, Fukuda H, "ZEN1 is a key enzyme in the degradation of
nuclear DNA during programmed cell death of tracheary elements" The Plant Cell 14 3201-3211 (2002)

075

Kamabe M, Miyazaki T, Hashimoto K, Shirahama H, "Formal
synthesis of FPA, a kainoid amino acid, via ketyl radical cyclization" Heterocycles 56 105-111 (2002)

076

Kang H, Jun S, Kim J, Kawaide H, Kamiya Y, An G, "Cloning ofgibberellin 3 β -hydroxylase cDNA and analysis of endogenous
gibberellins in the developing seeds in watermelon" Plant Cell
Physiology 43 152-158 (2002)

077

Kasahara H, Hanada A, Kuzuyama T, Takagi M, Kamiya Y, Yamaguchi S, "Contribution of the mevalonate and methyleryth-jiwara T, "Regulation of sulfur-responsive gene expression byexogenously applied cytokinins in Arabidopsis thaliana" Plant
Cell Physiology 43 1493-1501 (2002)

ritol phosphate pathways to the biosynthesis of gibberellins in
Arabidopsis" The Journal of Biological Chemistry 277 4518845194 (2002)

078

Kim H, Min J, Choi G, Kim J, Kim B, Chung B, Kim B, Kim Y,
Yamaguchi I, Cho K, "Synthesis of a new 1,2,4-oxadiazol-5-one
derivative, KC10017, and its controlling activity against rice
blast disease caused by Magnaporthe grisea" Journal of Pesticide Science 27 229-234 (2002)

091

Okada K, Kawaide H, Kuzuyama T, Seto H, Curtis I, Kamiya Y,"Antisense and chemical suppression of the nonmevalonate
pathway affects ent-kaurene biosynthesis in Arabidopsis"
Planta 215 339-344 (2002)

079

Kimura M, Furuichi M, Yamamoto M, Kumasaka T, Mizuno H,
Miyano M, Yamaguchi I, "The flexible C-terminal region ofAspergillus terreus blasticidin S deaminase: Identification of
its functional roles with deletion enzymes" Biochemical andBiophysical Research Communications 290 421-426 (2002)

092

Okano Y, Mizohata E, Xie Y, Matsumura H, Sugawara H, Inoue
T, Yokota A, Kai Y, "X-ray structure of Galdieria Rubisco complexed with one sulfate ion per active site" FEBS Letters 527
33-36 (2002)

093

Oshima M, Fujimura M, Banno S, Hashimoto C, Motoyama T,
Ichiishi A, Yamaguchi I, "A point mutation in the two-component histidine kinase BcOS-1 gene confers dicarboximide
resistance in field isolates of Botrytis cinerea" Phytopathology
92 75-80 (2002)

094

Putalun W, Tanaka H, Muranaka T, Shoyama Y, "Determination of aculeatisides based on immunoassay using a polyclonal
antibody against aculeatiside A" Analyst 127 1328-1332 (2002)

095

Motoyama T, Nakasako M, Yamaguchi I, "Crystallization of
scytalone dehydratase F162A mutant in the unligated state
and a preliminary X-ray diffraction study at 37 K" Acta Crystallographica Section D 58 148-150 (2002)

Saito C, Nagata N, Sakai A, Mori K, Kuroiwa H, Kuroiwa T,"Angiosperm species that produce sperm cell pairs or generative cells with polarized distribution of DNA-containing organelles" Sexual Plant Reproduction 15 167-178 (2002)

096

Nagata N, Suzuki M, Yoshida S, Muranaka T, "Mevalonic acidpartially restores chloroplast and etioplast development inArabidopsis lacking the non-mevalonate pathway" Planta 216
345-350 (2002)

Sakakibara H, Takei K, "Identification of cytokinin biosynthesis
genes in Arabidopsis: A breakthrough for understanding themetabolic pathway and the regulation in higher plants" Journal of Plant Growth Regulation 21 17-23 (2002)

097

Nakanomyo I, Kost B, Chua N, Fukuda H, "Preferential andasymmetrical accumulation of a Rac small GTPase mRNA in
differentiating xylem cells of Zinnia elegans" Plant Cell Physiology 43 1484-1492 (2002)

Sang S, Lao A, Leng Y, Cao L, Chen Z, Uzawa J, Yoshida S, Fujimoto Y, "Segetoside F a new triterpenoid saponin with inhibition of luteal cell from the seeds of Vaccaria segetalis" Jounal
of Asian Natural Products Research 4 297-301 (2002)

098

Sawa S, Ohgishi M, Goda H, Higuchi K, Shimada Y, Yoshida S,
Koshiba T, "The HAT2 gene, a member of the HD-Zip genefamily, isolated as an auxin inducible gene by DNA microarray
screening, affects auxin response in Arabidopsis" The Plant
Journal 32 1011-1022 (2002)

099

Schellmann S, Schnittger A, Kirik V, Wada T, Okada K, Beermann A, Thumfahrt J, Jurgens G, Hulskamp M, "TRIPTYCHON
and CAPRICE mediate lateral inhibition during trichome androot hair patterning in Arabidopsis" The EMBO Journal 215036-5046 (2002)100

Srivastava H, Shankar N, Yamaya T, "Role and regulation of
glutamate synthases in higher plants" Physiology and Molecular Biology of Plants 8 39-60 (2002)

080

Kuriyama H, Fukuda H, "Developmental programmed cell
death in plants" Current Opinion in Plant Biology 5 568-573(2002)

081

Makizumi Y, Takeda S, Matsuzaki Y, Nakaune R, Hamamoto H,
Akutsu K, Hibi T, "Cloning and selective toxicant-induced expression of BMR1 and BMR3, novel ABC transporter genes in
Botrytis cinerea" Journal of General Plant Pathology 68 338341 (2002)

082

083

084

085

Nakaune R, Hamamoto H, Imada J, Akutsu K, Hibi T, "A novel
ABC transporter gene, PMR5, is involved in multidrug resistance in the phytopathogenic fungus Penicillium digitatum"
Molecular Genetics and Genomics 267 179-185 (2002)

086

Nambara E, Suzuki M, Abrams S, McCarty D, Kamiya Y, McCourt P, "A screen for genes that function in abscisic acid signaling in Arabidopsis thaliana" Genetics 161 1247-1255 (2002)

087

Nishitani C, Demura T, Fukuda H, "Analysis of early processes
in wound-induced vascular regeneration using Ted3 and
ZeHB3 as molecular markers" Plant Cell Physiology 43 79-90(2002)

088

Ochiai N, Fujimura M, Oshima M, Motoyama T, Ichiishi A,
Yamada-Okabe H, Yamaguchi I, "Effects of iprodione andfludioxonil on glycerol synthesis and hyphal development in
Candida albicans" Bioscience Biotechnology and Biochemistry
66 2209-2215 (2002)

101

Sugiharto B, Ermawati N, Mori H, Aoki K, Sakakibara K, Yamaya T, Sugiyama T, Sakakibara H, "Identification and characterization of a gene encoding drought-inducible protein
localizing in the bundle sheath cell of sugarcane" Plant Cell
Physiology 43 350-354 (2002)

089

Ohashi-Ito K, Demura T, Fukuda H, "Promotion of transcript
accumulation of novel Zinnia immature xylem-specific HD-Zip
III homeobox genes by brassinosteroids" Plant Cell Physiology
43 1146-1153 (2002)

102

090

Ohkama N, Takei K, Sakakibara H, Hayashi H, Yoneyama T, Fu-

Suzuki H, Nakayama T, Sakakibara K, Fukui Y, Nakamura N,
Yamaguchi M, Tanaka Y, Kusumi T, Nishino T, "cDNA cloning,heterologous expressions, and functional characterizationof malonyl-coenzyme A:Anthocyanidin 3-O-Glucoside-6"-O-malonyltransferase from dahlia flowers" Plant Physiology
130 2142-2151 (2002)

PSC Publications 2000 – 2012

103

104

105

106

107

108

109

110

111

112

113

114

115

Suzuki M, Kato A, Nagata N, Komeda Y, "A xylanase, AtXyn1,
is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome" Plant Cell Physiology 43 759-767 (2002)

116

Suzuki Y, Kurano M, Arai Y, Nakashita H, Doi Y, Usami R, Horikoshi K, Yamaguchi I, "Enzyme inhibitors to increase poly3-hydroxybutyrate production by transgenic tobacco" Bioscience Biotechnology and Biochemistry 66 2537-2542 (2002)

117

Takahashi-Ando N, Kimura M, Kakeya H, Osada H, Yamaguchi
I, "A novel lactonohydrolase responsible for the detoxificationof zearalenone: enzyme purification and gene cloning" Biochemical Journal 365 1-6 (2002)
Takei K, Takahashi T, Sugiyama T, Yamaya T, Sakakibara H,"Multiple routes communicating nitrogen availability fromroots to shoots: a signal transduction pathway mediated bycytokinin" Journal of Experimental Botany 53 971-977 (2002)
Tamura K, Imamura M, Yoneyama K, Kohno Y, Takikawa Y, Yamaguchi I, Takahashi H, "Role of phaseolotoxin production by
Pseudomonas syringae pv. actinidiae in the formation of halo
lesions of kiwifruit canker disease" Physiological and Molecular Plant Pathology 60 207-214 (2002)
Wada T, Kurata T, Tominaga R, Kimura Y, Tachibana T, Goto K,
Marks M, Shimura Y, Okada K, "Role of a positive regulator ofroot hair development, CAPRICE, in Arabidopsis root epidermal cell differentiation" Development 129 5409-5419 (2002)
Yamaguchi S, Kamiya Y, "Gibberellins and light-stimulated
seed germination" Journal of Plant Growth Regulation 20
369-376 (2002)

118

Yuasa K, Maeshima M, "Equilibrium dialysis measurements of
the Ca2+-binding properties of recombinant radish vacuolar
Ca2+-binding protein expressed in Escherichia coli" Bioscience
Biotechnology and Biochemistry 66 2382-2387 (2002)
Asakura Y, Hagino T, Ohta Y, Aoki K, Sakakibara K, Deji A,
Yamaya T, Sugiyama T, Sakakibara H, "Molecular characterization of His-Asp phosphorelay signaling factors in maize leaves:
Implications of the signal divergence by cytokinin-inducible
response regulators in the cytosol and the nuclei" Plant Molecular Biology 52 331-341 (2003)
Banno S, Kimura M, Tokai T, Kasahara S, Higa-Nishiyama A,
Takahashi-Ando N, Hamamoto H, Fujimura M, Staskawicz B,
Yamaguchi I, "Cloning and characterization of genes specifically expressed during infection stages in the rice blast fungus" FEMS Microbiology Letters 222 221-227 (2003)
Delhaize E, Kataoka T, Hebb D, White R, Ryan P, "Genes encoding proteins of the cation diffusion facilitator family that
confer manganese tolerance" The Plant Cell 15 1131-1142(2003)

Fujimura M, Ochiai N, Oshima M, Motoyama T, Ichiishi A, Usami R, Horikoshi K, Yamaguchi I, "Putative homologs of SSK22
MAPKK kinase and PBS2 MAPK kinase of Saccharomyces cerevisiae encoded by os-4 and os-5 genes for osmotic sensitivity
and fungicide resistance in Neurospora crassa" Bioscience Biotechnology and Biochemistry 67 186-191 (2003)
Gawronska H, Deji A, Sakakibara H, Sugiyama T, "Hormonemediated nitrogen signaling in plants: implication of participation of abscissic acid in negative regulation of cytokinininducible expression of maize response regulator" Plant
Physiology and Biochemistry 41 605-610 (2003)

119

Hamada S, Ishiyama K, Choi S, Wang C, Singh S, Kawai N,
Franceschi V, Okita T, "The transport of prolamine RNAs toprolamine protein bodies in living rice endosperm cells" The
Plant Cell 15 2253-2264 (2003)

120

Hamada S, Ishiyama K, Sakulsingharoj C, Choi S, Wu Y, Wang
C, Singh S, Kawai N, Messing J, Okita T, "Dual regulated RNAtransport pathways to the cortical region in developing riceendosperm" The Plant Cell 15 2265-2272 (2003)

121

122

Yamaya T, Obara M, Nakajima H, Sasaki S, Hayakawa T, Sato T,"Genetic manipulation and quantitative-trait loci mapping fornitrogen recycling in rice" Journal of Experimental Botany 53
917-925 (2002)
Yoshimoto N, Takahashi H, Smith F, Yamaya T, Saito K, "Twodistinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots" The
Plant Journal 29 465-473 (2002)

Fleet C, Yamaguchi S, Hanada A, Kawaide H, David C, Kamiya
Y, Sun T, "Overexpression of AtCPS and AtKS in Arabidopsis
confers increased ent-kaurene production but no increase inbioactive gibberellins" Plant Physiology 132 830-839 (2003)

123

124

125

126

127

Harada A, Sakai T, Okada K, "Phot1 and phot2 mediate blue
light-induced transient increases in cytosolic Ca2+ differently inArabidopsis leaves" Proceedings of the National Academy of
Sciences of the United States of America 100 8583-8588 (2003)
Hayakawa T, Sakai T, Ishiyama K, Hirose N, Nakajima H,
Takezawa M, Naito K, Hino-Nakayama M, Akagawa T, Goto S,
Yamaya T, "Organization and structure of ferredoxin-dependent glutamate synthase gene and intracellular localization of
the enzyme protein in rice plants" Plant Biotechnology 20 4355 (2003)
Higa A, Kimura M, Mimori K, Ochiai-Fukuda T, Tokai T, Takahashi-Ando N, Nishiuchi T, Igawa T, Fujimura M, Hamamoto
H, Usami R, Yamaguchi I, "Expression in cereal plants of genesthat inactivate Fusarium Mycotoxins" Bioscience Biotechnology and Biochemistry 67 914-918 (2003)
Ishiyama K, Kojima S, Takahashi H, Hayakawa T, Yamaya T,"Cell type distinct accumulations of mRNA and protein for
NADH-dependent glutamate synthase in rice roots in responseto the supply of NH4+" Plant Physiology and Biochemistry 41
643-647 (2003)
Kimura M, Tokai T, Matsumoto G, Fujimura M, Hamamoto
H, Yoneyama K, Shibata T, Yamaguchi I, "Trichothecene nonproducer Gibberella species have both functional and nonfunctional 3-O-acetyltransferase genes" Genetics 163 677-684(2003)
Kimura M, Tokai T, O'Donnell K, Ward T, Fujimura M, Hamamoto H, Shibata T, Yamaguchi I, "The trichothecene biosynthesis gene cluster of Fusarium graminearum F15 contains
a limited number of essential pathway genes and expressed
non-essential genes" FEBS Letters 539 105-110 (2003)
Kurata T, Awai C, Sakuradani E, Shimizu S, Okada K, Wada T,"The YORE-YORE gene regulates multiple aspects of epidermal cell differentiation in Arabidopsis" The Plant Journal 36

55-66 (2003)

128

Kushiro T, Nambara E, McCourt P, "Hormone evolution: The
key to signalling" Nature 422 12298 (2003)

129

Lee J, Takei K, Sakakibara H, Cho H, Kim D, Kim Y, Min S, Kim
W, Sohn D, Lim Y, Pai H, "CHRK1, a chitinase-related receptorlike kinase, plays a role in plant development and cytokinin
homeostasis in tobacco" Plant Molecular Biology 53 877-890(2003)

130

131

Maruyama-Nakashita A, Inoue E, Takahashi A, Yamaya T,
Takahashi H, "Transcriptome profiling of sulfur-responsive
genes in Arabidopsis reveals global effects of sulfur nutrition
on multiple metabolic pathways" Plant Physiology 132 597605 (2003)
Mitsuhashi W, Toyomasu T, Masui H, Katoh T, Nakaminami
K, Kashiwagi Y, Akutsu M, Kenmoku H, Sassa T, Yamaguchi S,
Kamiya Y, Kamada H, "Gibberellin is essentially required forcarrot (Daucus carota L.) somatic embryogenesis: Dynamic
regulation of gibberellin 3-oxidase gene expressions" Bioscience Biotechnology and Biochemistry 67 2438-2447 (2003)

132

Nakaminami K, Sawada Y, Suzuki M, Kenmoku H, Kawaide H,
Mitsuhashi W, Sassa T, Inoue Y, Kamiya Y, Toyomasu T, "Deactivation of gibberellin by 2-oxidation during germinationof photoblastic lettuce seeds" Bioscience Biotechnology andBiochemistry 67 1551-1558 (2003)

133

Nakamura A, Higuchi K, Goda H, Fujiwara M, Sawa S, Koshiba
T, Shimada Y, Yoshida S, "Brassinolide induces IAA5, IAA19,
and DR5, a synthetic auxin response element in Arabidopsis,
implying a cross talk point of brassinosteroid and auxin signaling" Plant Physiology 133 1843-1853 (2003)

134

Nakamura A, Shimada Y, Goda H, Fujiwara M, Asami T, Yoshida S, "AXR1 is involved in BR-mediated elongation and
SAUR-ACI gene expression Arabidopsis" FEBS Letters 553 2832 (2003)

135

Nakamura T, Motoyama T, Hirokawa T, Hirono S, Yamaguchi
I, "Computer-aided modeling of pentachlorophenol 4-monooxygenase and site-directed mutagenesis of its active site"
Chemical and Pharmaceutical Bulletin 51 1293-1298 (2003)

136

Nambara E, Marion-Poll A, "ABA action and interactions inseeds" Trends in Plant Science 8 213-217 (2003)

137

Nishimura T, Yokota E, Wada T, Shimmen T, Okada K, "An Arabidopsis ACT2 dominant-negative mutation, which disturbs
F-actin polymerization, reveals its distinctive function in root
development" Plant Cell Physiology 44 1131-1140 (2003)

138

Nishioka M, Nakashita H, Suzuki H, Akiyama S, Yoshida S, Yamaguchi I, "Induction of resistance against rice blast disease
by a novel class of plant activator, pyrazolecarboxylic acid derivatives" Journal of Pesticide Science 28 416-421 (2003)

139

Nomura T, Bishop G, Kaneta T, Reid J, Chory J, Yokota T, "TheLKA gene is a BRASSINOSTEROID INSENSITIVE 1 homolog ofpea" The Plant Journal 36 291-300 (2003)

140

Ogawa M, Hanada A, Yamauchi Y, Kuwahara A, Kamiya Y,
Yamaguchi S, "Gibberellin biosynthesis and response during
Arabidopsis seed germination" The Plant Cell 15 1591-1604(2003)

141

Okinaka Y, Shimada Y, Nakano-Shimada R, Ohbayashi M, Kiyokawa S, Kikuchi Y, "Selective accumulation of delphinidin
derivatives in tobacco using a putative flavonoid 3',5'-hydroxylase cDNA from Campanula medium" Bioscience Biotechnology and Biochemistry 67 161-165 (2003)

142

Sakakibara H, "Differential response of genes for ferredoxin
and ferredoxin:NADP+ oxidoreductase to nitrate and light inmaize leaves" Journal of Plant Physiology 160 65-70 (2003)

143

Sakakibara H, "Nitrate-specific and cytokinin-mediated nitrogen signaling pathways in plants" Journal of Plant Research
116 253-257 (2003)

144

Sang S, Xia Z, Lao A, Cao L, Chen Z, Uzawa J, Fujimoto Y,"Studies on the constituents of the seeds of Vaccaria segetalis" Heterocycles 59 811-821 (2003)

145

Shimada Y, Goda H, Nakamura A, Suguru T, Fujioka S, Yoshida
S, "Organ-specific expression of brassinosteroid-biosynthetic
genes and distribution of endogenous brassinosteroids in Arabidopsis" Plant Physiology 131 287-297 (2003)

146

Someya N, Nakajima M, Watanabe K, Hibi T, Akutsu K, "Influence of bacteria isolated from rice plants and rhizospheres on
antibiotic production by the antagonistic bacterium Serratia
marcescens strain B2" Journal of General Plant Pathology 69
342-347 (2003)

147

Someya N, Numata S, Nakajima M, Hasebe A, Hibi T, Akutsu
K, "Biological control of rice blast by the epiphytic bacterium
Erwinia ananas transformed with a chitinolytic enzyme genefrom an antagonistic bacterium, Serratia marcescens strain
B2" Journal of General Plant Pathology 69 276-282 (2003)

148

Sonoda Y, Ikeda A, Saiki S, Von W, Yamaya T, Yamaguchi J,"Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice" Plant Cell Physiology 44
726-734 (2003)

149

Sonoda Y, Ikeda A, Satomi S, Yamaya T, Yamaguchi J, "Feedback regulation of the ammonium Transporter gene family
AMT1 by glutamine in rice" Plant Cell Physiology 44 13961402 (2003)

150

Suenaga A, Moriya K, Sonoda Y, Ikeda A, Wiren N, Hayakawa
T, Yamaguchi J, Yamaya T, "Constitutive expression of a noveltype ammonium transporter OsAMT2 in rice plants" Plant Cell
Physiology 44 206-211 (2003)

151

Takei K, Dekishima Y, Eguchi T, Yamaya T, Sakakibara H, "A
new method for enzymatic preparation of isopentenyladenine-type and trans-zeatin-type cytokinins with radioisotopelabeling" Journal of Plant Research 116 259-263 (2003)

152

Takei K, Yamaya T, Sakakibara H, "A method for separationand determination of cytokinin nucleotides from plant tissues" Journal of Plant Research 116 265-269 (2003)

153

Woo S, Kimura M, Nishiyama A, Dohmae N, Hamamoto H,
Seung-Keun J, Yamaguchi I, "Proteome analysis of wheat
lemma" Bioscience Biotechnology and Biochemistry 67 24862491 (2003)

154

Yamaguchi M, Kato H, Yoshida S, Yamamura S, Uchimiya H,
Umeda M, "Control of in vitro organogenesis by cyclin-dependent kinase activities in plants" Proceedings of the National

PSC Publications 2000 – 2012

Academy of Sciences of the United States of America 100
8019-8023 (2003)

155

156

157

158

159

160

Yoshimoto N, Inoue E, Saito K, Yamaya T, Takahashi H, "Phloem-localizing sulfate transporter, Sultr1;3, mediates re-distribution of sulfur from source to sink organs in Arabidopsis"
Plant Physiology 131 1511-1517 (2003)
Arai Y, Shikanai T, Doi Y, Yoshida S, Yamaguchi I, Nakashita H,"Production of polyhydroxybutyrate by polycistronic expression of bacterial genes in tobacco plastid" Plant Cell Physiology 45 1176-1184 (2004)
Buchner P, Takahashi H, Hawkesford M, "Plant sulphatetransporters: co-ordination of uptake, intracellular and longdistance transport" Journal of Experimental Botany 55 17651773 (2004)
Endo M, Tsuchiya T, Saito H, Matsubara H, Hakozaki H, Masuko H, Kamada M, Higashitani A, Takahashi H, Fukuda H,
Demura T, Watanabe M, "Identification and molecular characterization of novel anther-specific genes in Oryza sativa L. byusing cDNA microarray" Genes and Genetic Systems 79 213226 (2004)
Fujiwara M, Nakamura A, Ito R, Shimada Y, Yoshida S, Moller
S, "Chloroplast division site placement requires dimerizationof the ARC11/AtMinD1 protein in Arabidopsis" Journal of Cell
Science 117 2399-2410 (2004)
Galis I, Kakiuchi Y, Simek P, Wabiko H, "Agrobacterium tumefaciens AK-6b gene modulates phenolic compound metabolism in tobacco" Phytochemistry 65 169-179 (2004)

161

Galis I, Smith J, Jameson P, "Salicylic acid-, but not cytokinininduced, resistance to WClMV is associated with increased
expression of SA-dependent resistance genes in Phaseolus vulgaris" Journal of Plant Physiology 161 459-466 (2004)

162

Gazzarrini S, Tsuchiya Y, Lumba S, Okamoto M, McCourt P,"The Transcription Factor FUSCA3 Controls Developmental
Timing in Arabidopsis through the Hormones Gibberellin and
Abscisic Acid" Developmental Cell 7 373-385 (2004)

163

164

165

166

167

bidopsis cytochrome P450 CYP707A encodes ABA 8'-hydroxylases: key enzymes in ABA catabolism" The EMBO Journal 23
1647-1656 (2004)

Otomo K, Kanno Y, Motegi A, Kenmoku H, Yamane H, Mitsuhashi W, Oikawa H, Toshima H, Itoh H, Matsuoka M, Sassa T,
Toyomasu T, "Diterpene cyclases responsible for the biosynthesis of phytoalexins, momilactones A, B, and Oryzalexins A-F
in rice" Bioscience Biotechnology and Biochemistry 68 20012006 (2004)

193

Otomo K, Kenmoku H, Oikawa H, Koenig W, Toshima H, Mitsuhashi W, Yamane H, Sassa T, Toyomasu T, "Biological functions of ent- and syn-copalyl diphosphate synthases in rice:
key enzymes for the branch point of gibberellin and phytoalexin biosynthesis" The Plant Journal 39 886-893 (2004)

194

Otsuka M, Kenmoku H, Ogawa M, Okada K, Mitsuhashi W,
Sassa T, Kamiya Y, Toyomasu T, Yamaguchi S, "Emission of ent-Kaurene, a diterpenoid hydrocarbon precursor for gibberellins, into the headspace from plants" Plant and Cell Physiology
45 1129-1138 (2004)

195

Nakamura A, Goda H, Shimada Y, Yoshida S, "Brassinosteroid
selectively regulates PIN gene expression in Arabidopsis" Bioscience Biotechnology and Biochemistry 68 952-954 (2004)

Pyo H, Demura T, Fukuda H, "Spatial and temporal tracing ofvessel differentiation in young Arabidopsis seedlings by theexpression of an immature tracheary element-specific promoter" Plant and Cell Physiology 45 1529-1536 (2004)

196

Nakamura T, Motoyama T, Hirono S, Yamaguchi I, "Identification, characterization, and site-directed mutagenesis of recombinant pentachlorophenol 4-monooxygenase" Biochimica
et Biophysica Acta 1700 151-159 (2004)

Sakakibara K, Kojima M, Yamaya T, Sakakibara H, "Molecularcharacterization of cytokinin-responsive histidine kinases inmaize. Differential ligand preferences and response to ciszeatin" Plant Physiology 134 1654-1661 (2004)

197

Nakamura T, Motoyama T, Suzuki Y, Yamaguchi I, "Biotransformation of pentachlorophenol by Chinese chive and arecombinant derivative of its rhizosphere-competent microorganism, Pseudomonas gladioli M-2196" Soil Biology & Biochemistry 36 787-795 (2004)

Seo M, Aoki H, Koiwai H, Kamiya Y, Nambara E, Koshiba T,"Comparative studies on the Arabidopsis aldehyde oxidase(AAO) gene family revealed a major role of AAO3 in ABA
biosynthesis in seeds" Plant and Cell Physiology 45 1694-1703(2004)

198

Someya N, Nakajima M, Hamamoto H, Yamaguchi I, Akutsu
K, "Effects of light conditions on prodigiosin stability in the
biocontrol bacterium Serratia marcescens strain B2" Journalof General Plant Pathology 70 367-370 (2004)

199

Narita N, Moore S, Horiguchi G, Kubo M, Demura T, Fukuda H,
Goodrich J, Tsukaya H, "Overexpression of a novel small peptide ROTUNDIFOLIA4 decreases cell proliferation and alters
leaf shape in Arabidopsis thaliana" The Plant Journal 38 699713 (2004)

Someya N, Niinuma K, Kimura M, Yamaguchi I, Hamamoto H,"Pattern of N gene-mediated systemic hypersensitive response
and turnover of viral replicase proten in tobacco" Archives ofVirology 149 2105-2113 (2004)

200

Nomura T, Jager C, Kitasaka Y, Takeuchi K, Fukami M, Yoneyama K, Matsushita Y, Nyunoya H, Takatsuto S, Fujioka S, Smith J,
Kerckhoffs L, Reid J, Yokota T, "Brassinosteroid deficiency due
to truncated steroid 5α -reductase causes dwarfism in the lk
mutant of pea" Plant Physiology 135 2220-2229 (2004)

Someya N, Numata S, Nakajima M, Hasebe A, Akutsu K, "Influence of rice-isolated bacteria on chitinase production by
the biocontrol bacterium Serratia marcescens strain B2 andthe genetically modified rice epiphytic bacterium" Journal of
General Plant Pathology 70 371-375 (2004)

201

Obara M, Sato T, Sasaki S, Kashiba K, Nagano A, Nakamura I,
Ebitani T, Yano M, Yamaya T, "Identification and characterization of a QTL on chromosome 2 for cytosolic glutamine synthetase content and panicle number in rice" Theoretical andApplied Genetics 110 1-11 (2004)

Sugawara H, Kusunoki M, Kurisu G, Fujimoto T, Aoyagi H,
Hatakeyama T, "Characteristic recognition of N-acetylgalactosamine by an invertebrate C-type lectin, CEL-I, revealed by xray crystallographic analysis" The Journal of Biological Chemistry 279 45219-45225 (2004)

202

Sugiyama K, Hayakawa T, Kudo T, Ito T, Yamaya T, "Interactionof N-acetylglutamate kinase with a PII-like protein in rice"
Plant Cell Physiology 45 1768-1778 (2004)

203

Suzuki M, Kamide Y, Nagata N, Seki H, Ohyama K, Kato H,
Masuda K, Sato S, Kato T, Tabata S, Yoshida S, Muranaka T,"Loss of function of 3-hydroxy-3-methylglutaryl coenzyme A

Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K, "dwarf
and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression ofa putative AP2 transcription factor" The Plant Journal 37 720729 (2004)

Inada-Tominaga S, Ohgishi M, Mayama T, Okada K, Sakai T,"RPT2 is a signal transducer involved in phototropic response
and stomatal opening by association with phototropin 1 inArabidopsis thaliana" The Plant Cell 16 887-896 (2004)

169

Ishiyama K, Inoue E, Tabuchi M, Yamaya T, Takahashi H, "Biochemical background and compartmentalized functions ofcytosolic glutamine synthetase for active ammonium assimilation in rice roots" Plant Cell Physiology 45 1640-1647 (2004)

181

Maruyama-Nakashita A, Nakamura Y, Yamaya T, Takahashi H,"A novel regulatory pathway of sulfate uptake in Arabidopsis
roots: implication of CRE1/WOL/AHK4-mediated cytokinindependent regulation" The Plant Journal 38 779-789 (2004)

170

Ishiyama K, Inoue E, Takahashi A, Obara M, Yamaya T, Takahashi H, "Kinetic properties and ammonium-dependent
regulation of cytosolic isoenzymes of glutamine synthetase in
Arabidopsis" The Journal of Biological Chemistry 279 1659816605 (2004)

182

Maruyama-Nakashita A, Nakamura Y, Yamaya T, Takahashi H,"Regulation of high-affinity sulphate transporters in plants:
towards systematic analysis of sulphur signalling and regulation" Journal of Experimental Botany 55 1843-1849 (2004)

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175

Goda H, Shimada Y, Fujioka S, Yoshida S, "Classification ofbrassinosteroid-regulated genes based on expression profiles
in bri1 and in response to a protein kinase inhibitor, staurosporin" Bioscience Biotechnology and Biochemistry 68 16051607 (2004)

176

Gonai T, Kawahara S, Tougou M, Satoh S, Hashiba T, Hirai N,
Kawaide H, Kamiya Y, Yoshioka T, "Abscisic acid in the thermoinhibition of lettuce seed germination and enhancementof its catabolism by gibberellin" Journal of Experimental
Botany 55 111-118 (2004)

177

Kasahara H, Takei K, Ueda N, Hishiyama S, Yamaya T, Kamiya Y,
Yamaguchi S, Sakakibara H, "Distinct isoprenoid origins of cis- and trans-Zeatin biosyntheses in Arabidopsis" The Journal of
Biological Chemistry 279 14049-14054 (2004)
Kataoka T, Hayashi N, Yamaya T, Takahashi H, "Root-to-shoottransport of sulfate in Arabidopsis. Evidence for the role of
SULTR3;5 as a component of low-affinity sulfate transport system in the root vasculature" Plant Physiology 136 4198-4204(2004)
Kataoka T, Takahashi A, Hayashi N, Ohnishi M, Mimura T,
Buchner P, Hawkesford M, Yamaya T, Takahashi H, "Vacuolar
sulfate transporters are essential determinants controlling internal distribution of sulfate in Arabidopsis" The Plant Cell 162693-2704 (2004)
Kawabe M, Mizutani K, Yoshida T, Teraoka T, Yoneyama K,
Yamaguchi I, Arie T, "Cloning of the pathogenicity-related
gene FPD1 in Fusarium oxysporum f. sp. lycopersici" Journalof General Plant Pathology 70 16-20 (2004)
Kenmoku H, Tanaka K, Tanaka K, Kato N, Sassa T, "Erinacol(Cyatha-3,12-dien-14 β -ol) and 11-O-acetylcyathin A3, new cyathane metabolites from an erinacine Q-producing Hericium
erinaceum" Bioscience Biotechnology and Biochemistry 68
1786-1789 (2004)
Kenmoku H, Tanaka M, Ogiyama K, Kato N, Sassa T, "Identification of (+)-phyllocladene, (-)-sandaracopimaradiene,and (+)-kaurene as new fungal metabolites from fusicoccinproducing Phomopsis amygdali F6" Bioscience Biotechnology
and Biochemistry 68 1574-1577 (2004)
Kiba T, Aoki K, Sakakibara H, Mizuno T, "Arabidopsis response
regulator, ARR22, ectopic expression of which results in phenotypes similar to the wol cytokinin-receptor mutant" Plant
Cell Physiology 45 1063-1077 (2004)

178

Koiwai H, Nakaminami K, Seo M, Mitsuhashi W, Toyomasu T,
Koshiba T, "Tissue-specific localization of an abscisic acid biosynthetic enzyme, AAO3, in Arabidopsis" Plant Physiology 134
1697-1707 (2004)

179

Kushiro T, Okamoto M, Nakabayashi K, Yamagishi K, Kitamura
S, Asami T, Hirai N, Koshiba T, Kamiya Y, Nambara E, "The Ara-

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191

of the National Academy of Sciences of the United States ofAmerica 101 2223-2228 (2004)

192

180

168

Goda H, Sawa S, Asami T, Fujioka S, Shimada Y, Yoshida S,"Comprehensive comparison of Auxin-regulated and Brassinosteroid-regulated genes in Arabidopsis" Plant Physiology
134 1555-1573 (2004)

Hatakeyama T, Shiba K, Matsuo N, Fujimoto T, Oda T, Sugawara H, Aoyagi H, "Characterization of recombinant CEL-I,
a GalNAc-specific C-type Lectin, expressed in Escherichia coli
using an artificial synthetic gene" Journal of Biochemistry 135
101-107 (2004)

Igawa T, Ochiai-Fukuda T, Takahashi-Ando N, Ohsato S, Shibata T, Yamaguchi I, Kimura M, "New TAXI-type xylanase
inhibitor genes are inducible by pathogens and wounding inhexaploid wheat" Plant Cell Physiology 45 1347-1360 (2004)

Matsuoka K, Demura T, Galis I, Horiguchi T, Sasaki M, Tashiro G,
Fukuda H, "A comprehensive gene expression analysis toward
the understanding of growth and differentiation of tobacco
BY-2 cells" Plant Cell Physiology 45 1280-1289 (2004)

Nakashita A, Nakamura Y, Takahashi A, Yamaya T, Takahashi
H, "Induction of SULTR1;1 sulfate transporter in Arabidopsis
roots involves protein phosphorylation/dephosphorylation
circuit for transcriptional regulation" Plant Cell Physiology 45
340-345 (2004)

Ohgishi M, Saji K, Okada K, Sakai T, "Functional analysis ofeach blue light receptor, cry1, cry2, phot1, and phot2, by using
combinatorial multiple mutants in Arabidopsis" Proceedings

PSC Publications 2000 – 2012

Palme K, Okada K, "The HALTED ROOT gene encoding the
26S proteasome subunit RPT2a is essential for the maintenance of Arabidopsis meristems" Development 131 2101-2111(2004)

reductase 1 (HMG1) in Arabidopsis leads to dwarfing, earlysenescence and male sterility, and reduced sterol levels" The
Plant Journal 37 750-761 (2004)

204

Takahashi-Ando N, Ohsato S, Shibata T, Hamamoto H, Yamaguchi I, Kimura M, "Metabolism of zearalenone by geneticallymodified organisms expressing the detoxification gene from
Clonostachys rosea" Applied and Environmental Microbiology
70 3239-3245 (2004)

205

Takatsuka C, Inoue Y, Matsuoka K, Moriyasu Y, "3-Methyladenine inhibits autophagy in tobacco culture cells under sucrose
starvation conditions" Plant Cell Physiology 45 265-274 (2004)

206

Takehisa H, Shimodate T, Fukuta Y, Ueda T, Yano M, Yamaya T,
Kameya T, Sato T, "Identification of quantitative trait loci forplant growth of rice in paddy field flooded with salt water"
Field Crops Research 89 85-95 (2004)

207

Takei K, Ueda N, Aoki K, Kuromori T, Hirayama T, Shinozaki K,
Yamaya T, Sakakibara H, "AtIPT3 is a key determinant of nitrate-dependent cytokinin biosynthesis in Arabidopsis" Plant
Cell Physiology 45 1053-1062 (2004)

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Takei K, Yamaya T, Sakakibara H, "Arabidopsis CYP735A1 andCYP735A2 encode cytokinin hydroxylases that catalyze thebiosynthesis of trans-Zeatin" The Journal of Biological Chemistry 279 41866-41872 (2004)
Tarutani Y, Morimoto T, Sasaki A, Yasuda M, Nakashita H, Yoshida S, Yamaguchi I, Suzuki Y, "Molecular characterization of
two highly homologous receptor-like kinase genes, RLK902
and RKL1, in Arabidopsis thaliana" Bioscience Biotechnology
and Biochemistry 68 1935-1941 (2004)
Tarutani Y, Sasaki A, Yasuda M, Nakashita H, Yoshida S, Yamaguchi I, Suzuki Y, "Identification of three clones which commonly interact with the kinase domains of highly homologous
two receptor-like kinase, RLK902 and RKL1" Bioscience Biotechnology and Biochemistry 68 2581-2587 (2004)
Tatematsu K, Kumagai S, Muto H, Sato A, Watahiki M, Harper
R, Liscum E, Yamamoto K, "MASSUGU2 encodes Aux/IAA19,
an auxin-regulated protein that functions together with thetranscriptional activator NPH4/ARF7 to regulate differential
growth responses of hypocotyl and formation of lateral roots
in Arabidopsis thaliana" The Plant Cell 16 379-393 (2004)
Tian C, Muto H, Higuchi K, Matamura T, Tatematsu K, Koshiba T, Yamamoto K, "Disruption and overexpression of
auxin response factor 8 gene of Arabidopsis affect hypocotyl
elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition" The Plant
Journal 40 333-343 (2004)
Tsuchiya Y, Nambara E, Naito S, McCourt P, "The FUS3 transcription factor functions through the epidermal regulator
TTG1 during embryogenesis in Arabidopsis" The Plant Journal
37 73-81 (2004)
Uchida T, Yamasaki T, Eto S, Sugawara H, Kurisu G, Nakagawa
A, Kusunoki M, Hatakeyama T, "Crystal structure of the hemolytic lectin CEL-III isolated from the marine invertebrate
Cucumaria echinata" The Journal of Biological Chemistry 279
37133-37141 (2004)
Ueda M, Matsui K, Ishiguro S, Sano R, Wada T, Paponov I,

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Li W, Liu X, Khan M, Yamaguchi S, "The effect of plant growth
regulators, nitric oxide, nitrate, nitrite and light on the germination of dimorphic seeds of Suaeda salsa under saline conditions" Journal of Plant Research 118 207-214 (2005)

242

Maeda K, Kimura S, Demura T, Takeda J, Ozeki Y, "DcMYB1
acts as a transcriptional activator of the carrot phenylalanine
ammonia-lyase gene (DcPAL1) in response to elicitor treatment, UV-B irradiation and the dilution effect" Plant Molecular Biology 59 739-752 (2005)

Kawashima C, Berkowitz O, Hell R, Noji M, Saito K, "Characterization and expression analysis of a serine acetyltransferase
gene family involved in a key step of the sulfur assimilation
pathway in Arabidopsis" Plant Physiology 137 220-230 (2005)

243

Maruyama-Nakashita A, Nakamura Y, Takahashi A, Inoue E,
Yamaya T, Takahashi H, "Identification of a novel cis-acting
element conferring sulfur deficiency response in Arabidopsis
roots" The Plant Journal 42 305-314 (2005)

231

244

Aoki K, Suzui N, Fujimaki s, Dohmae N, Sakakibara K, Fujiwara
T, Hayashi H, Yamaya T, Sakakibara H, "Destination-selective
long-distance movement of phloem proteins" The Plant Cell
17 1801-1814 (2005)

Kiba T, Naitou T, Koizumi N, Yamashino T, Sakakibara H,
Mizuno T, "Combinatorial microarray analysis revealing Arabidopsis genes implicated in cytokinin responses through theHis → Asp phosphorelay circuitry" Plant Cell Physiology 46
339-355 (2005)

Mase K, Sato K, Nakano Y, Nishikubo N, Tsuboi Y, Zhou J, Kitano H, Katayama Y, "The ectopic expression of phenylalanine
ammonia lyase with ectopic accumulation of polysaccharidelinked hydroxycinnamoyl esters in internode parenchyma ofrice mutant Fukei 71" Plant Cell Reports 24 487-493 (2005)

232

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Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T,
Nishimura A, Angeles E, Qian Q, Kitano H, Matsuoka M, "Cytokinin oxidase regulates rice grain production" Science 309
741-745 (2005)

Kimura Y, Wada T, Tachibana T, Tsugeki R, Ishiguro S, Okada
K, "Regulation of CAPRICE transcription by MYB proteins forroot epidermis differentiation in Arabidopsis" Plant and Cell
Physiology 46 817-826 (2005)

Matsui A, Yokoyama R, Seki M, Ito T, Shinozaki K, Takahashi T,
Komeda Y, Nishitani K, "AtXTH27 plays an essential role in cellwall modification during the development of tracheary elements" The Plant Journal 42 525-534 (2005)

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Awazuhara M, Fujiwara T, Hayashi H, Takahashi A, Takahashi H,
Saito K, "The function of SULTR2;1 sulfate transporter during
seed development in Arabidopsis thaliana" Physiologia Plantarum 125 95-105 (2005)

Kitajima M, Fujii N, Yoshino F, Sudo H, Saito K, Aimi N, Takiyama H, "Camptothecins and two new monoterpene glucosides
from Ophiorrhiza liukiuensis" Chemical and Pharmaceutical
Bulletin 53 1355-1358 (2005)

234

247

Curtis I, Hanada A, Yamaguchi S, Kamiya Y, "Modification ofplant architecture through the expression of GA 2-oxidase
under the control of an estrogen inducible promoter in Arabidopsis thaliana L" Planta 222 957-967 (2005)

Kohara A, Nakajima C, Hashimoto K, Ikenaga T, Tanaka H,
Shoyama Y, Yoshida S, Muranaka T, "A novel glucosyltransferase involved in steroid saponin biosynthesis in Solanum aculeatissimum" Plant Molecular Biology 57 225-239 (2005)

Mochizuki S, Harada A, Tominaga S, Sugimoto-Shirasu K,
Stacey N, Wada T, Ishiguro S, Okada K, Sakai T, "The arabidopsis WAVY GROWTH 2 protein modulates root bending in
response to environmental stimuli" The Plant Cell 17 537-547(2005)

235

Mok M, Martin R, Dobrev P, Vankova R, Ho S, Sakakibara K,
Sakakibara H, Mok D, "Topolins and hydroxylated thidiazuron
derivatives are substrates of cytokinin O-Glucosyltransferasewith position specificity related to receptor recognition" Plant
Physiology 137 1057-1066 (2005)

248

Montoya T, Nomura T, Yokota T, Farrar K, Harrison K, Jones J,
Kaneta T, Kamiya Y, Szekeres M, Bishop G, "Patterns of Dwarf
expression and brassinosteroid accumulation in tomato reveal
the importance of brassinosteroid synthesis during fruit development" The Plant Journal 42 262-269 (2005)

249

Nakabayashi K, Okamoto M, Koshiba T, Kamiya Y, Nambara E,"Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation oftranscription in seed" The Plant Journal 41 697-709 (2005)

250

Nakagawa H, Jiang C, Sakakibara H, Kojima M, Honda I, Ajisaka H, Nishijima T, Koshioka M, Tamaki H, Mander L, Takatsuji H,"Overexpression of a petunia zinc-finger gene alters cytokinin
metabolism and plant forms" The Plant Journal 41 512-523(2005)

251

Nambara E, Marion-Poll A, "Abscisic acid biosynthesis and catabolism" Annual Review of Plant Biology 56 165-185 (2005)

252

Narusaka Y, Narusaka M, Seki M, Ishida J, Shinozaki K, Nan Y,
Park P, Shiraishi T, Kobayashi M, "Cytological and molecularanalyses of non-host resistance of Arabidopsis thaliana to
Alternaria alternata" Molecular Plant Pathology 6 615-627(2005)

Uzawa J, Yoshida S, "A new selective population transfer
experiment using a double pulsed field gradient spin-echo"
Magnetic Resonance in Chemistry 42 1046-1048 (2004)

217

Yamauchi Y, Ogawa M, Kuwahara A, Hanada A, Kamiya Y,
Yamaguchi S, "Activation of gibberellin biosynthesis and response pathways by low temperature during imbibition of
Arabidopsis thaliana seeds" The Plant Cell 16 367-378 (2004)

218

Zheng M, Takahashi H, Miyazaki A, Hamamoto H, Shah J, Yamaguchi I, Kusano T, "Up-regulation of Arabidopsis thaliana
NHL10 in the hypersensitive response to Cucumber mosaic
virus infection and in senescing leaves is controlled by signaling pathways that differ in salicylate involvement" Planta 218
740-750 (2004)

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Galis I, Bilyeu K, Godinho M, Jameson P, "Expression of three
Arabidopsis cytokinin oxidase/dehydrogenase promoter::GUS
chimeric constructs in tobacco: response to developmental
and biotic factors" Plant Growth Regulation 45 173-182 (2005)

224

Galis I, Bilyeu K, Wood G, Jameson P, "Rhodococcus fascians: shoot proliferation without elevated cytokinins?" Plant
Growth Regulation 46 109-115 (2005)

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(2005)"

206 (2005)

Henmi K, Demura T, Tsuboi S, Fukuda H, Iwasaki M, Ogawa K,"Change in the redox state of glutathione regulates differentiation of tracheary elements in Zinnia cells and Arabidopsis
roots" Plant Cell Physiology 46 1757-1765 (2005)
Hirai MY, Klein M, Fujikawa Y, Yano M, Goodenowe D,
Yamazaki Y, Kanaya S, Nakamura Y, Kitayama M, Suzuki H,
Sakurai N, Shibata D, Tokuhisa J, Reichelt M, Gershenzon J,
Papenbrock J, Saito K, "Elucidation of Gene-to-Gene andMetabolite-to-Gene Networks in Arabidopsis by Integrationof Metabolomics and Transcriptomics" The Journal of Biological Chemistry 280 25590-25595 (2005)
Hirose N, Makita N, Yamaya T, Sakakibara H, "Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest
a function in cytokinin transport" Plant Physiology 138 196-

228

Hoewyk D, Garifullina G, Ackley A, Abedel-Ghany S, Marcus M,
Fakra S, Ishiyama K, Inoue E, Pilon M, Takahashi H, Pilon-Smits
E, "Overexpression of AtCpNifS enhances selenium tolerance
and accumulation in Arabidopsis" Plant Physiology 139 15181528 (2005)

229

Katagiri T, Ishiyama K, Katoh T, Tabata S, Kobayashi M, Shinozaki K, "An important role of phosphatidic acid in ABA signaling during germination in Arabidopsis thaliana" The Plant
Journal 43 107-117 (2005)

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Kozuka T, Horiguchi G, Kim G, Ohgishi M, Sakai T, Tsukaya H,"The different growth responses of the Arabidopsis thaliana
leaf blade and the petiole during shade avoidance are regulated by photoreceptors and sugar" Plant Cell Physiology 46
213-223 (2005)
Kubo M, Udagawa M, Nishikubo N, Horiguchi G, Yamaguchi M,
Ito J, Mimura T, Fukuda H, Demura T, "Transcription switches
for protoxylem and metaxylem vessel formation" Genes & Development 19 1855-1860 (2005)
Kurata T, Ishida T, Awai C, Noguchi M, Hattori S, Sano R, Nagasaka R, Tominaga R, Kimura Y, Kato T, Sato S, Tabata S, Okada
K, Wada T, "Cell-to-cell movement of the CAPRICE protein in
Arabidopsis root epidermal cell differentiation" Development
132 5387-5398 (2005)
Kurata T, Okada K, Wada T, "Intercellular movement of transcription factors" Current Opinion in Plant Biology 8 600-605(2005)
Li W, Khan M, Yamaguchi S, Kamiya Y, "Effects of heavy metals on seed germination and early seedling growth of Arabidopsis thaliana" Plant Growth Regulation 46 45-50 (2005)
Li W, Liu X, Khan M, Kamiya Y, Yamaguchi S, "Hormonal andenvironmental regulation of seed germination in flixweed (Descurainia sophia)" Plant Growth Regulation 45 199-207

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Nishimura T, Wada T, Yamamoto K, Okada K, "The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning" The Plant
Cell 17 2940-2953 (2005)
Nishioka M, Nakashita H, Yasuda M, Yoshida S, Yamaguchi I,"Induction of resistance against rice bacterial leaf blight by
3-chloro-1-methyl-1H-pyrazole-5-carboxylic acid" Journal of
Pesticide Science 30 47-49 (2005)
Nomura T, Kushiro T, Yokota T, Kamiya Y, Bishop G, Yamaguchi S, "The last reaction producing brassinolide is catalyzed
by cytochrome P-450s, CYP85A3 in tomato and CYP85A2 in
Arabidopsis" The Journal of Biological Chemistry 280 1787317879 (2005)
Ohashi-Ito K, Kubo M, Demura T, Fukuda H, "Class III Homeodomain Leucine-Zipper Proteins Regulate Xylem Cell Differentiation" Plant Cell Physiology 46 1646-1656 (2005)
Okada T, Hirai MY, Suzuki H, Yamazaki M, Saito K, "Molecularcharacterization of a novel quinolizidine alkaloid O-tigloyltransferase: cDNA cloning, catalytic activity of recombinant
protein and expression analysis in Lupinus plants" Plant Cell
Physiology 46 233-244 (2005)

of rice sheath blight" Biocontrol Science and Technology 15
105-109 (2005)

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Oksman-Caldentey K, Saito K, "Integrating genomics and metabolomics for engineering plant metabolic pathways" Current Opinion in Biotechnology 16 174-179 (2005)
Sakakibara H, Kasahara H, Ueda N, Kojima M, Takei K, Hishiyama S, Asami T, Okada K, Kamiya Y, Yamaya T, Yamaguchi S,"Agrobacterium tumefaciens increases cytokinin productionin plastids by modifying the biosynthetic pathway in the hostplant" Proceedings of the National Academy of Sciences of
the United States of America 102 9972-9977 (2005)
Sasaki-Sekimoto Y, Taki N, Obayashi T, Aono M, Matsumoto F,
Sakurai N, Suzuki H, Hirai MY, Noji M, Saito K, Masuda T, Takamiya K, Shibata D, Ohta H, "Coordinated activation of metabolic pathways for antioxidants and defence compounds byjasmonates and their roles in stress tolerance in Arabidopsis"
The Plant Journal 44 653-668 (2005)
Sawa S, Demura T, Horiguchi G, Kubo M, Fukuda H, "The ATE
genes are responsible for repression of transdifferentiation
into xylem cells in Arabidopsis" Plant Physiology 137 141-148(2005)
Seki H, Nishizawa T, Tanaka N, Niwa Y, Yoshida S, Muranaka T,"Hairy root-activation tagging: a high-throughput system foractivation tagging in transformed hairy roots" Plant Molecular Biology 59 793-807 (2005)
Shimizu M, Igasaki T, Yamada M, Yuasa K, Hasegawa J, Kato
T, Tsukagoshi H, Nakamura K, Fukuda H, Matsuoka K, "Experimental determination of proline hydroxylation and hydroxyproline arabinogalactosylation motifs in secretory proteins"
The Plant Journal 42 877-889 (2005)
Solfanelli C, Ceron F, Paolicchi F, Giorgetti L, Geri C, Ceccarelli
N, Kamiya Y, Picciarelli P, "Expression of two genes encoding
Gibberellin 2- and 3-oxidases in developing seeds of Phaseolus
coccineus" Plant Cell Physiology 46 1116-1124 (2005)
Someya N, Nakajima M, Watanabe K, Hibi T, Akutsu K, "Potential of Serratia marcescens strain B2 for biological control

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Sugawara H, Kawano Y, Hatakeyama T, Yamaya T, Kamiya N,
Sakakibara H, "Crystal structure of the histidine-containing
phosphotransfer protein ZmHP2 from maize" Protein Science
14 202-208 (2005)
Sugawara H, Yamaya T, Sakakibara H, "Crystallization andpreliminary X-ray diffraction study of the histidine-containing
phosphotransfer protein ZmHP1 from maize" Acta Crystallographica Section F 61 366-368 (2005)
Sun J, Hirose N, Wang X, Wen P, Xue L, Sakakibara H, Zuo J,"Arabidopsis SOI33/AtENT8 gene encodes a putative equilibrative nucleoside transporter that is involved in cytokinintransport in planta " Journal of Integrative Plant Biology (Acta
Botanica Sinica) 47 588-603 (2005)
Suzuki T, Nakajima S, Inagaki S, Hirano-Nakakita M, Matsuoka
K, Demura T, Fukuda H, Morikami A, Nakamura K, "TONSOKU
is expressed in S phase of the cell cycle and its defect delays
cell cycle progression in Arabidopsis" Plant Cell Physiology 46
736-742 (2005)
Tabuchi M, Sugiyama K, Ishiyama K, Inoue E, Sato T, Takahashi
H, Yamaya T, "Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutaminesynthetase1;1" The Plant Journal 42 641-651 (2005)
Takahashi H, Yoshimoto N, Saito K, "Anionic nutrient transport in plants: The molecular basis of the sulfate transporter
gene family" Genetic Engineering 27 67-80 (2005)
Tatematsu K, Ward S, Leyser O, Kamiya Y, Nambara E, "Identification of cis-Elements That Regulate Gene Expression during
Initiation of Axillary Bud Outgrowth in Arabidopsis" Plant
Physiology 138 757-766 (2005)
Terakado J, Fujihara S, Goto S, Kuratani R, Suzuki Y, Yoshida
S, Yoneyama T, "Systemic Effect of a Brassinosteroid on Root
Nodule Formation in Soybean as Revealed by the Applicationof Brassinolide and Brassinazole" Soil Science and Plant Nutrition 51 389-395 (2005)
Tohge T, Matsui K, Takagi M, Yamazaki M, Saito K, "Enhanced
radical scavenging activity of genetically modified Arabidopsis
seeds" Biotechnology Letters 27 297-303 (2005)
Tohge T, Nishiyama Y, Hirai MY, Yano M, Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenwe D, Kitayama M, Noji
M, Yamazaki M, Saito K, "Functional genomics by integrated
analysis of metabolome and transcriptome of Arabidopsis
plants over-expressing an MYB transcription factor" The Plant
Journal 42 218-235 (2005)
Tokai T, Fujimura M, Inoue H, Aoki T, Ohta K, Shibata T, Yamaguchi I, Kimura M, "Concordant evolution of trichothecene 3O-acetyltransferase and an rDNA species phylogeny of trichothecene-producing and non-producing fusaria and other ascomycetous fungi" Microbiology 151 509-519 (2005)
Tokimatsu T, Sakurai N, Suzuki H, Ohta H, Nishitani K, Koyama
T, Umezawa T, Misawa N, Shibata D, Saito K, "Kappa-View: A
web-based analysis tool for integration of transcription andmetabolite data on plant metabolic pathway maps" Plant
Physiology 138 1289-1300 (2005)

278

Toyooka K, Takai s, Kirikae T, "Rhodococcus equi can survive aphagolysosomal environment in macrophages by suppressing
acidification of the phagolysosome" Journal of Medical Microbiology 54 1007-1015 (2005)

292

Galis I, Simek P, Narisawa T, Sasaki M, Horiguchi T, Fukuda H,
Matsuoka K, "Tobacco microarray reveals novel MYB transcription factor that selectively activates genes in phenylpropanoid metabolism" The Plant Journal 43 573-592 (2006)

293

Geisler-Lee J, Geisler M, Coutinho P, Segerman B, Nishikubo N,
Takahashi J, Aspeborg H, Djerbi S, Master E, Andersson-Gunneras S, Sundberg B, Karpinski S, Teeri T, Kleczkowski L, Henrissat B, Mellerowicz E, "Poplar carbohydrate-active enzymes.
Gene identification and expression analyses" Plant Physiology
140 946-962 (2006)

294

Yamauchi D, Sutoh K, Kanegae H, Matsuoka K, Horiguchi T,
Fukuda H, Wada M, "Analysis of expressed sequence tags inprothallia of Adiantum capillus-veneris" Journal of Plant Research 118 223-227 (2005)

Gonzalez-Lamothe R, Tsitsigiannis D, Ludwig A, Panicot M,
Shirasu K, Jones J, "The U-Box Protein CMPG1 Is Required for
Efficient Activation of Defense Mechanisms Triggered by Multiple Resistance Genes in Tobacco and Tomato" The Plant Cell
18 1067-1083 (2006)

295

Yoshida K, Endo M, Nakazono M, Fukuda H, Demura T, Tsuchiya T, Watanabe M, "cDNA microarray analysis of gene expression changes during pollination, pollen-tube elongation, fertilization, and early embryogenesis in rice pistils" Sexual Plant
Reproduction 17 269-275 (2005)

Gross J, Cho W, Lezhneva L, Falk J, Krupinska K, Shinozaki K,
Seki M, Herrmann R, Meurer J, "A plant locus essential forphylloquinone (Vitamin K 1) biosynthesis originated from afusion of four eubacterial genes" The Journal of Biological
Chemistry 281 17189-17196 (2006)

296

Hamada T, Igarashi H, Yao M, Hashimoto T, Shimmen T, Sonobe S, "Purification and characterization of plant dynaminfrom tobacco BY-2 cells" Plant Cell Physiology 47 1175-1181(2006)

297

Hatayama M, Ono E, Sakakibara K, Tanaka Y, Nishino T, Nakayama T, "Biochemical characterization and mutational studies of a chalcone synthase from yellow snapdragon (Antirrhinum majus) flowers" Plant Biotechnology 23 373-378 (2006)

298

Hayashi T, Harada A, Sakai T, Takagi S, "Ca2+ transient induced
by extracellular changes in osmotic pressure in Arabidopsis
leaves: differential involvement of cell wall-plasma membraneadhesion" Plant, Cell and Environment 29 661-672 (2006)

299

Higashi Y, Hirai MY, Fujiwara T, Naito S, Noji M, Saito K, "Proteomic and transcriptomic analysis of Arabidopsis seeds: Molecular evidence for successive processing of seed proteins andits implication in the stress response to sulfur nutrition" The
Plant Journal 48 557-571 (2006)

300

Hwang I, Sakakibara H, "Cytokinin biosynthesis and perception" Physiologia Plantarum 126 528-538 (2006)

279

Umeda M, Shimotohno A, Yamaguchi M, "Control of Cell Division and Transcription by Cyclin-dependent Kinase-activating
Kinases in Plants" Plant Cell Physiology 46 1437-1442 (2005)

280

Yamada M, Morishita H, Urano K, Shiozaki N, YamaguchiShinozaki K, Shinozaki K, Yoshiba Y, "Effects of free proline
accumulation in petunias under drought stress" Journal of
Experimental Botany 56 1975-1981 (2005)

281

Yamaguchi-Shinozaki K, Shinozaki K, "Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive
promoters" Trends in Plant Science 10 88-94 (2005)

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convergence in the stress signaling networks" Current Opinion in Plant Biology 9 436-442 (2006)

284

Yuasa K, Toyooka K, Fukuda H, Matsuoka K, "Membraneanchored prolyl hydroxylase with an export signal from theendoplasmic reticulum" The Plant Journal 41 81-94 (2005)

285

Akihiro T, Umezawa T, Ueki C, Mohamed B, Mizuno K, Ohta M,
Fujimura T, "Genome wide cDNA-AFLP analysis of genes rapidly induced by combined sucrose and ABA treatment in ricecultured cells" FEBS Letters 580 5947-5952 (2006)

286

Aniento F, Matsuoka K, Robinson D, "ER-to-Golgi transport:
the COPII-Pathwayc in the plant endoplasmic reticulum" Plant
Cell Monographs 4 99-124 (2006)

287

Arita M, Fujiwara Y, Nakanishi Y, "Map Editor for the Atomic
Reconstruction of Metabolism (ARM)" Biotechnology in Agriculture and Forestry 57: Plant Metabolomics 57 129-140 (2006)

288

Azevedo C, Betsuyaku S, Peart J, Takahashi A, Noel L, Sadanandom A, Casais C, Parker J, Shirasu K, "Role of SGT1 in resistance protein accumulation in plant immunity" The EMBO
Journal 25 2007-2016 (2006)

289

Bishop G, Nomura T, Yokota T, Montoya T, Castle J, Harrison
K, Kushiro T, Kamiya Y, Yamaguchi S, Bancos S, Szatmari A,
Szekeres M, "Dwarfism and cytochrome P450-mediated C-6oxidation of plant steroid hormones" Biochemical Society
Transactions 34 1199-1201 (2006)

301

Ichikawa T, Nakazawa M, Kawashima M, Iizumi H, Kuroda H,
Kondou Y, Tsuhara Y, Suzuki K, Ishikawa A, Seki M, Fujita M,
Motohashi R, Nagata N, Takagi T, Shinozaki K, Matsui M, "TheFOX hunting system: an alternative gain-of-function gene
hunting technique" The Plant Journal 48 974-985 (2006)

290

Chono M, Honda I, Shinoda S, Kushiro T, Kamiya Y, Nambara
E, Kawakami N, Kaneko S, Watanabe Y, "Field studies on theregulation of abscisic acid content and germinability duringgrain development of barley: molecular and chemical analysis
of pre-harvest sprouting" Journal of Experimental Botany 57
2421-2434 (2006)

302

Ichimura K, Casais C, Peck S, Shinozaki K, Shirasu K, "MEKK1Is Required for MPK4 Activation and Regulates Tissue-specificand Temperature-dependent Cell Death in Arabidopsis" The
Journal of Biological Chemistry 281 36969-36976 (2006)

303

Imai K, Ohashi Y, Tsuge T, Yoshizumi T, Matsui M, Oka A,
Aoyama T, "The A-Type Cyclin CYCA2;3 Is a Key Regulator of
Ploidy Levels in Arabidopsis Endoreduplication" The Plant Cell
18 382-396 (2006)

291

Fujita M, Fujita Y, Noutoshi Y, Takahashi F, Narusaka Y, Yamaguchi-Shinozaki K, Shinozaki K, "Crosstalk between abiotic
and biotic stress responses: a current view from the points of

PSC Publications 2000 – 2012

304

Ishiyama K, Inoue E, Yamaya T, Takahashi H, "Gln49 andSer174 residues play critical roles in determining the catalytic
efficiencies of plant glutamine synthetase" Plant Cell Physiology 47 299-303 (2006)

305

Kakiuchi Y, Galis I, Tamogami S, Wabiko H, "Reduction of polar auxin transport in tobacco by the tumorigenic Agrobacterium tumefaciens AK-6b gene" Planta 223 237-247 (2006)

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Kanno Y, Otomo K, Kenmoku H, Mitsuhashi W, Yamane H,
Oikawa H, Toshima H, Matsuoka M, Sassa T, Toyomasu T,"Characterization of a rice gene family encoding type-A diterpene cyclases" Bioscience Biotechnology and Biochemistry 70
1702-1710 (2006)
Kasukabe N, Watanabe-Sugimoto M, Matsuoka K, Okuma E,
Obi I, Nakamura Y, Shimoishi Y, Murata Y, Kakutani K, "Expression and Ca2+ dependency of plasma membrane K+ channels of Tobacco suspension cells adapted to salt stress" Plant
Cell Physiology 47 1674-1677 (2006)

F, Balliau T, Valot B, Davanture M, Terce-Laforgue T, Quillere I,
Coque M, Gallais A, Gonzalez-moro M, Bethencourt L, Habash
D, Lea P, Charcosset A, Perez P, Muringneux A, Sakakibara H,
Edwards K, Hirel B, "Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain
production" The Plant Cell 18 3252-3274 (2006)

317

Maruyama A, Nakamura Y, Tohge T, Saito K, Takahashi H, "Arabidopsis SLIM1 is a central transcriptional regulator ofplant sulfur response and metabolism" The Plant Cell 18 32353251 (2006)

318

Mitchum M, Yamaguchi S, Hanada A, Kuwahara A, Yoshioka
Y, Kato T, Tabata S, Kamiya Y, Sun T, "Distinct and overlapping
roles of two gibberellin 3-oxidases in Arabidopsis development" The Plant Journal 45 804-818 (2006)

319

Muto H, Nagao I, Demura T, Fukuda H, Kinjo M, Yamamoto
K, "Fluorescence cross-correlation analyses of the molecularinteraction between an Aux/IAA protein, MSG2/IAA19, andprotein-protein interaction domains of auxin response factorsof Arabidopsis expressed in HeLa cells" Plant Cell Physiology
47 1095-1101 (2006)

Kikuchi J, Hirayama T, "Practical aspects of uniform stable isotope labeling of higher plants for heteronuclear NMR-based
metabolomics" Methods in Molecular Biology 358 273-286(2006)

320

Kita A, He Y, Sugiura R, Ma Y, Deng L, Takegawa K, Matsuoka K,
Shuntoh H, Takayoshi K, "Genetic and functional interaction
between Ryh1 and Ypt3: two Rab GTPases that function in S.
pombe secretory pathway" Genes to Cells 11 207-221 (2006)

Myouga F, Motohashi R, Kuromori T, Nagata N, Shinozaki K,"An Arabidopsis chloroplast-targeted Hsp101 homologue,
APG6, has an essential role in chloroplast development as wellas heat-stress response" The Plant Journal 48 249-260 (2006)

321

Kojoma M, Seki H, Yoshida S, Muranaka T, "DNA polymorphisms in the tetrahydrocannabinolic acid (THCA) synthasegene in "drug-type" and "fiber-type" Cannabis sativa L."
Forensic Science International 159 132-140 (2006)

Nakajima J, Sato Y, Hoshino T, Yamazaki M, Saito K, "Mechanistic study on the oxidation of anthocyanidin synthase by
quantum mechanical calculation" The Journal of Biological
Chemistry 281 21387-21398 (2006)

322

Nakamura A, Nakajima N, Goda H, Shimada Y, Hayashi K,
Nozaki H, Asami T, Yoshida S, Fujioka S, "Arabidopsis Aux/
IAA genes are involved in brassinosteroid-mediated growth
responses in a manner dependent on organ type" The Plant
Journal 45 193-205 (2006)

Kuroha T, Ueguchi C, Sakakibara H, Satoh S, "Cytokinin receptors are required for normal development of auxin-transporting vascular tissues in the hypocotyl but not in adventitious
roots" Plant Cell Physiology 47 234-243 (2006)

323

Kuromori T, Wada T, Kamiya A, Yuguchi M, Yokouchi T, Imura Y,Takabe H, Sakurai T, Akiyama K, Hirayama T, Okada K, Shinozaki K, "A trial of phenome analysis using 4000 Ds-insertional
mutants in gene-coding regions of Arabidopsis" The Plant
Journal 47 640-651 (2006)
Lefebvre V, North H, Frey A, Sotta B, Seo M, Okamoto M,
Nambara E, Marion-Poll A, "Functional analysis of Arabidopsis
NCED6 and NCED9 genes indicates that ABA synthesized in
the endosperm is involved in the induction of seed dormancy"
The Plant Journal 45 309-319 (2006)
Loque D, Yuan L, Kojima S, Gojon A, Wirth J, Gazzarrini S,
Ishiyama K, Takahashi H, Wiren N, "Additive contributionof AMT1;1 and AMT1;3 to high-affinity ammonium uptake
across the plasma membrane of nitrogen-deficient Arabidopsis roots" The Plant Journal 48 522-534 (2006)
Machida M, Takechi K, Sato H, Chung S, Kuroiwa H, Takio S,
Seki M, Shinozaki K, Fujita T, Hasebe M, Takano H, "Genes forthe peptidoglycan synthesis pathway are essential for chloroplast division in moss" Proceedings of the National Academyof Sciences of the United States of America 103 6753-6758(2006)
Martin A, Lee J, Kichey T, Gerentes D, Zivy M, Tatout C, Dubois

324

Nishiuchi T, Masuda D, Nakashita H, Ichimura K, Shinozaki
K, Yoshida S, Kimura M, Kimura M, Yamaguchi I, Yamaguchi
K, "Fusarium phytotoxin trichothecenes have an elicitor-like
activity in Arabidopsis thaliana, but the activity differed significantly among their molecular species" Molecular PlantMicrobe Interactions 19 512-520 (2006)
Noji M, Kawashima C, Obayashi T, Saito K, "In silico assessment of gene function involved in cysteine biosynthesis in
Arabidopsis: expression analysis of multiple isoforms of serine
acetyltransferase" Amino Acids 30 163-171 (2006)

328

Ohnishi T, Nomura T, Watanabe B, Ohta D, Yokota T, Miyagawa H, Sakata K, Mizutani M, "Tomato cytochrome P450
CYP734A7 functions in brassinosteroid catabolism" Phytochemistry 67 1895-1906 (2006)

329

Okamoto M, Kuwahara A, Seo M, Kushiro T, Asami T, Hirai N,
Kamiya Y, Koshiba T, Nambara E, "CYP707A1 and CYP707A2,
which encode abscisic acid 8'-hydroxylases, are indispensablefor proper control of seed dormancy and germination in Arabidopsis" Plant Physiology 141 97-107 (2006)

330

331

Ono E, Fukuchi-Mizutani M, Nakamura N, Fukui Y, Sakakibara
K, Yamaguchi M, Nakayama T, Tanaka T, Kusumi T, Tanaka
Y, "Yellow flowers generated by expression of the aurone
biosynthetic pathway" Proceedings of the National Academyof Sciences of the United States of America 103 11075-11080(2006)
Ono E, Hatayama M, Isono Y, Sato T, Watanabe R, Sakakibara K,
Fukuchi-Mizutani M, Tanaka Y, Kusumi T, Nishino T, Nakayama
T, "Localization of a flavonoid biosynthetic polyphenol oxidase in vacuoles" The Plant Journal 45 133-143 (2006)

332

Oono Y, Seki M, Satou M, Iida K, Akiyama K, Sakurai T, Fujita M,
Yamaguchi-Shinozaki K, Shinozaki K, "Monitoring expression
profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays" Functional & Integrative
Genomics 6 212-234 (2006)

333

Pyo H, Demura T, Fukuda H, "Vascular cell expression patternsof Arabidopsis bZIP group I genes" Plant Biotechnology 23497-501 (2006)

334

Rahman L, Kitamaura Y, Yamaguchi J, Mukai M, Akiyama K,
Yamamoto H, Muranaka T, Ikenaga T, "Exogenous plant H6H
but not bacterial HCHL gene is expressed in Duboisia leichhardtii hairy roots and affects tropane alkaloid production"
Enzyme and Microbial Technology 39 1183-1189 (2006)

335

Saito S, Okamoto M, Shinoda S, Kushiro T, Koshiba T, Kamiya
Y, Hirai N, Todoroki Y, Sakata K, Nambara E, Mizutani M, "A
plant growth retardant, Uniconazole, is a potent inhibitor of
ABA catabolism in Arabidopsis" Bioscience Biotechnology andBiochemistry 70 1731-1739 (2006)

Sasabe M, Soyano T, Takahashi Y, Sonobe S, Igarashi H, Itoh
T, Hidaka M, Machida Y, "Phosphorylation of NtMAP65-1
by a MAP kinase down-regulates its activity of microtubule
bundling and stimulates progression of cytokinesis of tobacco
cells" Genes & Development 20 1004-1014 (2006)

343

Sato Y, Demura T, Yamawaki K, Inoue Y, Seiichi S, Sugiyama M,
Fukuda H, "Isolation and characterization of a novel peroxidase gene ZPO-C whose expression and function are closely
associated with lignification during tracheary element differentiation" Plant Cell Physiology 47 493-503 (2006)

344

Schroeder J, Nambara E, "A quick release mechanism for abscisic acid" Cell 126 1023-1025 (2006)

345

Seo M, Hanada A, Kuwahara A, Endo A, Okamoto M, Yamauchi Y, North H, Marion-Poll A, Sun T, Koshiba T, Kamiya Y, Yamaguchi S, Nambara E, "Regulation of hormone metabolism
in Arabidopsis seeds: phytochrome regulation of abscisic acidmetabolism and abscisic acid regulation of gibberellin metabolism" The Plant Journal 48 354-366 (2006)

346

Shinya T, Menard R, Kozone I, Matsuoka H, Shibuya N, Kauffmann S, Matsuoka K, Saito M, "Novel β -1,3-, 1,6-oligoglucan
elicitor from Alternaria alternata 102 for defense responses intobacco" FEBS Journal 273 2421-2431 (2006)

347

Soeno K, Fujioka S, Hiranuma S, Seto H, Yoshida S, "Metabolic
conversion of castasterone and brassinolide into their glucosides in higher plants" Journal of Plant Growth Regulation 25
195-202 (2006)

348

Stacey N, Kuromori T, Azumi Y, Roberts G, Breuer C, Wada
T, Maxwell A, Roberts K, Sugimoto-Shirasu K, "Arabidopsis
SPO11-2 functions with SPO11-1 in meiotic recombination"
The Plant Journal 48 206-216 (2006)

349

Suzuki M, Xiang T, Ohyama K, Seki H, Saito K, Muranaka T,
Hayashi H, Katsube Y, Kushiro T, Shibuya M, Ebizuka Y, "Lanosterol Synthase in Dicotyledonous Plants" Plant Cell Physiology 47 565-571 (2006)

Sakakibara H, "Cytokinins: activity, biosynthesis, and translocation" Annual Review of Plant Biology 57 431-449 (2006)

337

Sakakibara H, Takei K, Hirose N, "Interactions between nitrogen and cytokinin in the regulation of metabolism and development" Trends in Plant Science 11 440-448 (2006)

350

Tanaka M, Takei K, Kojima M, Sakakibara H, Mori H, "Auxin
controls local cytokinin biosynthesis in the nodal stem in apical dominance" The Plant Journal 45 1028-1036 (2006)

351

Tanaka Y, Sano T, Tamaoki M, Nakajima N, Kondo N, Hasezawa S, "Cytokinin and auxin inhibit abscisic acid-induced
stomatal closure by enhancing ethylene production in Arabidopsis" Journal of Experimental Botany 57 2259-2266 (2006)

352

Togami J, Tamura M, Ishiguro K, Hirose C, Okuhara H, Ueyama
Y, Nakamura N, Sakakibara K, Fukuchi-Mizutani M, Suzuki
K, Fukui Y, Kusumi T, Tanaka Y, "Molecular characterizationof the flavonoid biosynthesis of verbena hybrida and thefunctional analysis of verbena and clitoria ternatea F3´5´
H genes in transgenic verbena" Plant Biotechnology 23 5-11
(2006)

353

Torada A, Koike M, Mochida K, Ogihara Y, "SSR-based linkage
map with new markers using an intraspecific population of

Nomura T, Bishop G, "Cytochrome P450s in plant steroid hormone synthesis and metabolism" Phytochemistry Reviews 5
421-432 (2006)

338

Sakakibara K, Saito K, "Review: genetically modified plants
for the promotion of human health" Biotechnology Letters
28 1983-1991 (2006)

326

Noutoshi Y, Kuromori T, Wada T, Hirayama T, Kamiya A, Imura
Y, Yasuda M, Nakashita H, Shirasu K, Shinozaki K, "Loss of
NECROTIC SPOTTED LESIONS 1 associates with cell death anddefense responses in Arabidopsis thaliana" Plant Molecular
Biology 62 29-42 (2006)

339

Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki
H, Inukai Y, Sato Y, Matsuoka M, "Ectopic Expression of KNOTTED1-like homeobox protein induces expression of cytokinin
biosynthesis genes in rice" Plant Physiology 142 54-62 (2006)

Oh E, Yamaguchi S, Kamiya Y, Bae G, Chung W, Choi G, "Light
activates the degradation of PIL5 protein to promote seedgermination through gibberellin in Arabidopsis" The Plant
Journal 47 124-139 (2006)

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Yamaguchi-Shinozaki K, "Dual function of an Arabidopsis
transcription factor DREB2A in water-stress-responsive andheat-stress-responsive gene expression" Proceedings of the
National Academy of Sciences of the United States of America
103 18822-18827 (2006)

340

Sakuma Y, Maruyama K, Osakabe Y, Qin F, Seki M, Shinozaki K,
Yamaguchi-Shinozaki K, "Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression" The Plant Cell 18 1292-1309 (2006)

341

Sakuma Y, Maruyama K, Qin F, Osakabe Y, Shinozaki K,

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common wheat" Theoretical and Applied Genetics 112 10421051 (2006)

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Toyooka K, Liu F, Ishii M, Saito S, Kirikae T, Asano Y, Shinomiya
H, "Generation and characterization of monoclonal antibodies that specifically recognize p65/L-plastin isoform but not Tplastin isoform" Bioscience Biotechnology and Biochemistry
70 1402-1407 (2006)

367

368

Toyooka K, Moriyasu Y, Goto Y, Takeuchi M, Fukuda H, Matsuoka K, "Protein aggregates are transported to vacuoles bymacroautophagic mechanism in nutrient-starved plant cells"
Autophagy 2 96-106 (2006)
Tsuji H, Aya K, Ueguchi M, Shimada Y, Nakazono M, Watanabe R, Nishizawa N, Gomi K, Shimada A, Kitano H, Ashikari
M, Matsuoka M, "GAMYB controls different sets of genes andis differentially regulated by microRNA in aleurone cells andanthers" The Plant Journal 47 427-444 (2006)

Umezawa T, Fujita M, Fujita Y, Yamaguchi-Shinozaki K, Shinozaki K, "Engineering drought tolerance in plants: discoveringand tailoring genes to unlock the future" Current Opinion in
Biotechnology 17 113-122 (2006)
Umezawa T, Okamoto M, Kushiro T, Nambara E, Oono Y,
Seki M, Kobayashi M, Koshiba T, Kamiya Y, Shinozaki K, "CYP707A3, a major ABA 8'-hydroxylase involved in dehydration
and rehydration response in Arabidopsis thaliana" The Plant
Journal 46 171-182 (2006)

379

Yoshida R, Umezawa T, Mizoguchi T, Takahashi S, Takahashi F,
Shinozaki K, "The regulatory domain of SRK2E/OST1/SnRK2.6
interacts with ABI1 and integrates abscisic acid (ABA) and osmotic stress signals controlling stomatal closure in Arabidopsis"
The Journal of Biological Chemistry 281 5310-5318 (2006)

Dittmer T, Stacey N, Sugimoto K, Richards E, "LITTLE NUCLEI
genes affecting nuclear morphology in Arabidopsis thaliana"
The Plant Cell 19 2793-2803 (2007)380

Yoshizumi T, Tsumoto Y, Takiguchi T, Nagata N, Yamamoto Y,
Kawashima M, Ichikawa T, Nakazawa M, Yamamoto N, Matsui
M, "INCREASED LEVEL OF POLYPLOIDY1, a Conserved Repressor of CYCLINA2 Transcription, Controls Endoreduplication in
Arabidopsis" The Plant Cell 18 2452-2468 (2006)

Dubouzet J, Ishihara A, Matsuda F, Miyagawa H, Iwata H,
Wakasa K, "Integrated metabolomic and transcriptomic analyses of high-tryptophan rice expressing a mutant anthranilate
synthase alpha subunit" Journal of Experimental Botany 58
3309-3321 (2007)

381

Fujita M, Mizukado S, Fujita Y, Ichikawa T, Nakazawa M, Seki
M, Matsui M, Yamaguchi-Shinozaki K, Shinozaki K, "Identification of stress-tolerance-related transcription-factor genes
via mini-scale Full-length cDNA Over-eXpressor (FOX) gene
hunting system" Biochemical and Biophysical Research Communications 364 250-257 (2007)

382

Haga N, Kato K, Murase M, Araki S, Kubo M, Demura T, Suzuki K, Muller I, Vob U, Jurgens G, Ito M, "R1R2R3-Myb proteins
positively regulate cytokinesis through activation of KNOLLE
transcription in Arabidopsis thaliana" Development 134 11011110 (2007)

383

Heise C, Le Duff C, Boter M, Casais C, Airey J, Leech A,
Amigues B, Guerois R, Moore G, Shirasu K, Kleanthous C, "Biochemical Characterization of RAR1 Cysteine- and HistidineRich Domains (CHORDs): A Novel Class of Zinc-Dependent
Protein − Protein Interaction Modules" Biochemistry 46 16121623 (2007)

384

Hirai MY, Sugiyama K, Sawada Y, Tohge T, Obayashi T, Suzuki
A, Araki R, Sakurai N, Suzuki H, Aoki K, Goda H, Nishizawa O,
Shibata D, Saito K, "Omics-based identification of Arabidopsis
Myb transcription factors regulating aliphatic glucosinolate
biosynthesis" Proceedings of the National Academy of Sciences of the United States of America 104 6478-6483 (2007)

369

Zhong R, Demura T, Ye Z, "SND1, a NAC domain transcription
factor, is a key regulator of secondary wall synthesis in fibersof Arabidopsis" The Plant Cell 18 3158-3170 (2006)

370

Zhu Y, Nomura T, Xu Y, Zhang Y, Peng Y, Mao B, Hanada A,
Zhou H, Wang R, Li P, Zhu X, Mander L, Kamiya Y, Yamaguchi S,
He Z, "ELONGATED UPPERMOST INTERNODE Encodes a Cytochrome P450 Monooxygenase That Epoxidizes Gibberellins ina Novel Deactivation Reaction in Rice" The Plant Cell 18 442456 (2006)

Tsuji H, Md. A, Arita M, Shinbo Y, Kurokawa K, Kanaya S,"Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms" IPSJ
Transactions on Bioinformatics 47 31-41 (2006)
Tsumoto Y, Yoshizumi T, Kuroda H, Kawashima M, Ichikawa
T, Nakazawa M, Yamamoto N, Matsui M, "Light-dependent
polyploidy control by a CUE protein variant in Arabidopsis"
Plant Molecular Biology 61 817-828 (2006)

125-136 (2006)

371

Arita M, Tokimatsu T, "Detection of monosaccharide types
from coordinates" Genome Informatics Series 19 3-14 (2007)

372

Arite T, Iwata H, Ohshima K, Maekawa M, Nakajima M, Kojima M, Sakakibara H, Kyozuka J, "DWARF10 ,an RMS1/MAX4/
DAD1 ortholog, controls lateral bud outgrowth in rice" The
Plant Journal 51 1019-1029 (2007)

373

Asahina M, Yamauchi Y, Hanada A, Kamiya Y, Kamada H,
Satoh S, Yamaguchi S, "Effects of the removal of cotyledonson endogenous gibberellin levels in hypocotyls of young cucumber and tomato seedlings" Plant Biotechnology 24 99-106(2007)

374

Boter M, Amigues B, Peart J, Breuer C, Kadota Y, Casais C,
Moore G, Kleanthous C, Ochsenbein F, Shirasu K, Guerois R,"Structural and functional analysis of SGT1 reveals that its
interaction with HSP90 is required for the accumulation of Rx,
an R protein involved in plant immunity" The Plant Cell 19
3791-3804 (2007)

375

Breuer C, Stacey N, West C, Zhao Y, Chory J, Tsukaya H, Azumi
Y, Maxwell A, Roberts K, Sugimoto K, "BIN4, a novel component of the plant DNA topoisomerase VI complex, is required
for endoreduplication in Arabidopsis" The Plant Cell 19 36553668 (2007)

361

Unno H, Uchida T, Sugawara H, Kurisu G, Sugiyama T, Yamaya
T, Sakakibara H, Hase T, Kusunoki M, "Atomic structure ofplant glutamine synthetase" The Journal of Biological Chemistry 281 29287-29296 (2006)

362

Uzawa J, Fujimoto Y, Yoshida S, "Incorporation of selective
population transfer and homo-spin decoupling into selective
one-dimensional experiments" Magnetic Resonance in Chemistry 44 45-53 (2006)

363

Yamaguchi S, "Gibberellin biosynthesis in Arabidopsis" Phytochemistry Reviews 5 39-47 (2006)

376

Yamaguchi-Shinozaki K, Shinozaki K, "Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses" Annual Review of Plant Biology 57 781803 (2006)

Bylesjo M, Eriksson D, Kusano M, Moritz T, Trygg J, "Data integration in plant biology: the O2PLS method for combinedmodeling of transcript and metabolite data" The Plant Journal 52 1181-1191 (2007)

377

Chunjie T, Chikayama E, Tsuboi Y, Kuromori T, Shinozaki K,
Kikuchi J, Hirayama T, "Top-down phenomics of Arabidopsis
thaliana metabolic profiling by one- and two-dimensional
nuclear magnetic resonance spectroscopy and transcriptome
analysis of albino mutants" The Journal of Biological Chemistry 282 18532-18541 (2007)

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366

Yamazaki M, Saito K, "Isolation and characterization of anthocyanin 5-O-glucosyltransferase in Perilla frutescens var.
crispa by differential display" Methods in Molecular Biology
317 255-266 (2006)
Yano M, Kanaya S, Amin M, Kurokawa K, Hirai MY, Saito K,"Integrated data mining of transcriptome and metabolome
based on BL-SOM" Journal of Computer Aided Chemistry 7

378

Demura T, Fukuda H, "Transcriptional regulation in wood formation" Trends in Plant Science 12 64-70 (2007)

385

Hirano K, Nakajima M, Asano K, Nishiyama T, Sakakibara H,
Kojima M, Katoh E, Xiang H, Tanahashi T, Hasebe M, Banks J,
Ashikari M, Kitano H, Ueguchi-Tanaka M, Matsuoka M, "TheGID1-mediated gibberellin perception mechanism is conserved in the Lycophyte Selaginella moellendorffii but not in
the bryophyte Physcomitrella patens" The Plant Cell 19 30583079 (2007)

386

Hirose N, Makita N, Kojima M, Nobusada T, Sakakibara H,"Overexpression of a type-A response regulator Alters ricemorphology and cytokinin metabolism" Plant Cell Physiology
48 523-539 (2007)

387

Ishida T, Hattori S, Sano R, Inoue K, Shirano Y, Hayashi H,
Shibata D, Sato S, Kato T, Tabata S, Okada K, Wada T, "Arabidopsis TRANSPARENT TESTA GLABRA2 is directly regulated by
R2R3 MYB transcription factors and is involved in regulationof GLABRA2 transcription in epidermal differentiation" The
Plant Cell 19 2531-2543 (2007)

388

Ishihara A, Matsuda F, Miyagawa H, Wakasa K, "Metabolomics
for metabolically manipulated plants: Effects of tryptophan
overproduction" Metabolomics 3 319-334 (2007)

389

Iwabuchi K, Sakai T, Takagi S, "Blue light-dependent nuclear
positioning in Arabidopsis thaliana leaf cells" Plant Cell Physiology 48 1291-1298 (2007)

390

Iwama A, Yamashino T, Tanaka Y, Sakakibara H, kakimoto
T, Sato S, Kato T, Tabata S, Nagatani A, Mizuno T, "AHK5

histidine kinase regulates root elongation through an ETR1dependent abscisic acid and ethylene signaling pathway inArabidopsis thaliana" Plant Cell Physiology 48 375-380 (2007)

391

Jager C, Symons G, Nomura T, Yamada Y, Smith J, Yamaguchi S,
Kamiya Y, Weller J, Yokota T, Reid J, "Characterization of two
brassinosteroid C-6 oxidase genes in pea" Plant Physiology
143 1894-1904 (2007)

392

Katsumoto Y, Fukuchi-Mizutani M, Fukui Y, Brugliera F, Holton
T, Karan M, Nakamura N, Sakakibara K, Togami J, Pigeaire A,
Tao G, Nehra N, Lu C, Dyson B, Tsuda S, Ashikari T, Kusumi T,
Mason J, Tanaka Y, "Engineering of the rose flavonoid biosynthetic pathway successfully generated blue-hued flowers
accumulating delphinidin" Plant Cell Physiology 48 1589-1600(2007)

393

Kiba T, Henriques R, Sakakibara H, Chua N, "Targeted degradation of PSEUDO-RESPONSE REGULATOR5 by an SCFZTL
complex regulates clock function and photomorphogenesis inarabidopsis thaliana" The Plant Cell 19 2516-2530 (2007)

394

Kobayashi K, Suzuki M, Tang J, Nagata N, Ohyama K, Seki H,
Kiuchi R, Kaneko Y, Nakazawa M, Matsui M, Matsumoto S,
Yoshida S, Muranaka T, "LOVASTATIN INSENSITIVE 1, a Novel
Pentatricopeptide Repeat Protein, is a Potential Regulatory
Factor of Isoprenoid Biosynthesis in Arabidopsis" Plant Cell
Physiology 48 322-331 (2007)

395

Kohara A, Nakajima C, Yoshida S, Muranaka T, "Characterization and engineering of glycosyltransferases responsible forsteroid saponin biosynthesis in Solanaceous plants" Phytochemistry 68 478-486 (2007)

396

Kurakawa T, Ueda N, Maekawa M, Kobayashi k, Kojima M,
Nagato Y, Sakakibara H, Kyozuka J, "Direct control of shootmeristem activity by a cytokinin-activating enzyme" Nature
445 652-655 (2007)

397

Kusano M, Fukushima A, Arita M, Jonsson P, Moritz T, Kobayashi M, Hayashi N, Tohge T, Saito K, "Unbiased characterization of genotype-dependent metabolic regulations by
metabolomic approach in Arabidopsis thaliana" BMC Systems
Biology 1 53 (2007)

398

Kusano M, Fukushima A, Kobayashi M, Hayashi N, Jonsson
P, Moritz T, Ebana K, Saito K, "Application of a metabolomic
method combining one-dimensional and two-dimensional
gas chromatography-time-of-flight/mass spectrometry tometabolic phenotyping of natural variants in rice" Journal of
Chromatography B 855 71-79 (2007)

399

Li-Yang J, Nakajima J, Kimura N, Saito K, Seo S, "Oleananetype triterpene glycosides from Glychyrrhiza ularensis" Natural Product Communications 2 243-248 (2007)

400

Lopez-Juez E, Bowyer J, Sakai T, "Distinct leaf developmental
and gene expression responses to light quantity depend on
blue-photoreceptor or plastid-derived signals, and can occur
in the absence of phototropins" Planta 227 113-123 (2007)

401

Luo J, Nishiyama Y, Fuell C, Taguchi G, Elliott K, Hill L, Tanaka Y,
Kitayama M, Yamazaki M, Bailey P, Parr A, Michael A, Saito K,
Martin C, "Convergent evolution in the BAHD family of acyltransferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana" The Plant
Journal 50 678-695 (2007)

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Maor R, Jones A, Nuhse T, Studholme D, Peck S, Shirasu K,"Multidimensional Protein Identification Technology (MudPIT)
Analysis of Ubiquitinated Proteins in Plants" Molecular andCellular Proteomics 6 601-610 (2007)

414

Maruyama A, Inoue E, Saito K, Takahashi H, "Sulfur-responsive
promoter of sulfate transporter gene is potentially useful todetect and quantify selenate and chromate" Plant Biotechnology 24 261-263 (2007)

415

Matsuda F, Wakasa K, Miyagawa H, "Metabolic flux analysis
in plants using dynamic labeling technique: Application totryptophan biosynthesis in cultured rice cells" Phytochemistry
68 2290-2301 (2007)
Mitsuda N, Iwase A, Yamamoto H, Yoshida M, Seki M, Shinozaki K, Takagi-Ohme M, "NAC transcription factors, NST1 and
NST3, are key regulators of the formation of secondary walls
in woody tissues of Arabidopsis" The Plant Cell 19 270-280(2007)
Miwa K, Takano J, Omori H, Seki M, Shinozaki K, Fujiwara
T, "Plants tolerant of high boron levels" Science 318 14173(2007)
Miya A, Albert P, Shinya T, Desaki Y, Ichimura K, Shirasu K,
Narusaka Y, Kawakami N, Kaku H, Shibuya N, "CERK1, a LysM
receptor kinase, is essential for chitin elicitor signaling in Arabidopsis" Proceedings of the National Academy of Sciences of
the United States of America 104 19613-19618 (2007)
Mizuno S, Osakabe Y, Maruyama K, Ito T, Sato T, Shinozaki K,
Yamaguchi-Shinozaki K, "Receptor-like protein kinase 2 (RPK2) is a novel factor controlling anther development in Arabidopsis thaliana" The Plant Journal 50 751-766 (2007)
Morioka R, Kanaya S, Hirai MY, Yano M, Ogasawara N, Saito K,"Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model" BMC Bioinformatics 8 343 (2007)
Motohashi R, Yamazaki T, Myouga F, Ito T, Ito K, Satou M,
Kobayashi M, Nagata N, Yoshida S, Nagashima A, Tanaka K,
Takahashi S, Shinozaki K, "Chloroplast ribosome release factor 1 (AtcpRF1) is essential for chloroplast development" Plant
Molecular Biology 64 481-497 (2007)
Naito T, Yamashino T, Kiba T, Koizumi N, Kojima M, Sakakibara H, Mizuno T, "A link between Cytokinin and ASL9 (asymmetric leaves 2 like 9) that belongs to the AS2/LOB (lateralorgan boundaries) family genes in Arabidopsis thaliana" Bioscience Biotechnology and Biochemistry 71 1269-1278 (2007)
Nakagawa Y, Katagiri T, Shinozaki K, Qi Z, Tatsumi H, Furuichi
T, Kishigami A, Sokabe M, Kojima I, Sato S, Kato T, Tabata S,
Iida K, Nakano M, Ikeda M, Yamanaka T, Iida H, "Arabidopsis
plasma membrane protein crucial for Ca2+ influx and touchsensing in roots" Proceedings of the National Academy of Sciences of the United States of America 104 3639-3644 (2007)
Nakamura H, Hakata M, Amano K, Miyao A, Toki N, Kajikawa
M, Jinhuang P, Higashi N, Ando S, Toki S, Fujita M, Enju A, Seki
M, Nakazawa M, Ichikawa T, Shinozaki K, Matsui M, Nagamura Y, Hirochika H, Ichikawa H, "A genome-wide gain-offunction analysis of rice genes using the FOX-hunting system"
Plant Molecular Biology 65 357-371 (2007)

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Nakashima K, Todaka D, Ahmed S, Umezawa T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K, "Molecular analysis of abiotic
stress: tolerant mechanisms in soybean and its application tobreeding" JIRCAS Working Report 13-19 (2007)
Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K,
Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi-Shinozaki
K, "Functional analysis of a NAC-type transcription factor
OsNAC6 involved in abiotic and biotic stress-responsive gene
expression in rice" The Plant Journal 51 617-630 (2007)
Nanjo T, Sakurai T, Totoki Y, Toyoda A, Nishiguchi M, Kado T,
Igasaki T, Futamura N, Seki M, Sakaki Y, Shinozaki K, Shinohara K, "Functional annotation of 19,841 Populus nigra fulllength enriched cDNA clones" BMC Genomics 8 1-10 (2007)
Nishikubo N, Awano T, Banasiak A, Bourquin V, Ibatullin F,
Funada R, Brumer H, Teeri T, Hayashi T, Sundberg B, Mellerowicz E, "Xyloglucan endo-transglycosylase (XET) functions ingelatinous layers of tension wood fibers in poplar-A glimpse
into the mechanism of the balancing act of trees" Plant andCell Physiology 48 843-855 (2007)

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Saika H, Okamoto M, Miyoshi K, Kushiro T, Shinoda S, Jikumaru Y, Fujimoto M, Arikawa T, Takahashi H, Ando M, Arimura S,
Miyao A, Hirochika H, Kamiya Y, Tsutsumi N, Nambara E, Nakazono M, "Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase
in Rice" Plant Cell Physiology 48 287-298 (2007)
Sakakibara K, Tohge T, Niida R, Saito K, "Identification of aflavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression
analysis and reverse genetics" The Journal of Biological Chemistry 282 14932-14941 (2007)
Sakurai T, Plata G, Rodriguez-Zapata F, Seki M, Salcedo A,
Toyoda A, Ishiwata A, Tohme J, Sakaki Y, Shinozaki K, Ishitani
M, "Sequencing analysis of 20,000 full-length cDNA clones
from cassava reveals lineage specific expansions in gene families related to stress response" BMC Plant Biology 7 1-17 (2007)

429

Nyarko A, Mosbahi K, Rowe A, Leech A, Boter M, Shirasu K,
Kleanthous C, "TPR-Mediated Self-Association of Plant SGT1"
Biochemistry 46 11331-113471 (2007)

Sasaki K, Saito T, Lamsa M, Oksman-Caldentey K, Suzuki M,
Ohyama K, Muranaka T, Ohara K, Yazaki K, "Plants utilize isoprene emission as a thermotolerance mechanism" Plant Cell
Physiology 48 1254-1262 (2007)

430

Obayashi t, Kinoshita K, Nakai K, Shibaoka M, Hayashi s, Saeki
M, Shibata D, Saito K, Ohta H, "ATTED-II: a database of coexpressed genes and cis elements for identifying co-regulated
gene groups in Arabidopsis" Nucleic Acids Research 35 863869 (2007)

Sato M, Nishikawa T, Kajitani h, Kawano S, "Conserved relationship between FtsZ and peptidoglycan in the cyanelles of
Cyanophora paradoxa similar to that in bacterial cell division"
Planta 227 177-187 (2007)

431

Oh E, Yamaguchi S, Hu J, Jikumaru Y, Jung B, Paik I, Lee H,
Sun T, Kamiya Y, Choi G, "PIL5, a phytochrome-interacting
bHLH protein, regulates gibberellin responsiveness by binding
directly to the GAI and RGA promoters in Arabidopsis seeds"
The Plant Cell 19 1192-1208 (2007)
Ohyama K, Suzuki M, Masuda K, Yoshida S, Muranaka T,"Chemical phenotypes of the hmg1 and hmg2 mutants ofArabidopsis demonstrate the in-planta role of HMG-CoA reductase in triterpene biosynthesis" Chemical and Pharmaceutical Bulletin 55 1518-1521 (2007)
Okuda K, Myouga F, Motohashi R, Shinozaki K, Shikanai T,"Conserved domain structure of pentatricopeptide repeat
proteins involved in chloroplast RNA editing" Proceedingsof the National Academy of Sciences of the United States ofAmerica 104 8178-8183 (2007)
Pyo H, Demura T, Fukuda H, "TERE; a novel cis-element responsible for a coordinated expression of genes related toprogrammed cell death and secondary wall formation during
differentiation of tracheary elements" The Plant Journal 51
955-965 (2007)

424

Qin F, Kakimoto M, Sakuma Y, Maruyama K, Osakabe Y, Tran
LS, Shinozaki K, Yamaguchi-Shinozaki K, "Regulation andfunctional analysis of ZmDREB2A in response to drought andheat stresses in Zea mays L" The Plant Journal 50 54-69 (2007)

425

Rivero R, Kojima M, Gepstein A, Sakakibara H, Mittler R,
Gepstein S, Blumwald E, "Delayed leaf senescence induces
extreme drought tolerance in a flowering plant" Proceedingsof the National Academy of Sciences of the United States ofAmerica 104 19631-19636 (2007)

Seki M, Umezawa T, Urano K, Shinozaki K, "Regulatory metabolic networks in drought stress responses" Current Opinion
in Plant Biology 10 296-302 (2007)

432

Sekiyama Y, Kikuchi J, "Towards dynamic metabolic network
measurements by multi-dimensional NMR-based fluxomics"
Phytochemistry 68 2320-2329 (2007)

433

Shen Q, Saijo Y, Mauch S, Biskup C, Bieri S, Keller B, Seki H,
Ulker B, Somssich I, Schulze-Lefert P, "Nuclear Activity of MLA
Immune Receptors Links Isolate-Specific and Basal DiseaseResistance Responses" Science 315 1098-1103 (2007)

434

Shimamura M, Akashi T, Sakurai N, Suzuki H, Saito K, Shibata
D, Ayabe S, Aoki T, "2-Hydroxyisoflavanone dehydratase is a
critical determinant of isoflavone productivity in hairy root
cultures of Lotus japonicus" Plant Cell Physiology 48 16521657 (2007)

Cell 19 1723-1737 (2007)

439

Sirikantaramas S, Sudo H, Asano T, Yamazaki M, Saito K,"Transport of camptothecin in hairy roots of Ophiorrhiza
pumila" Phytochemistry 68 2881-2886 (2007)

440

Sirikantaramas S, Yamazaki M, Saito K, "Mechanisms of resistance to self-produced toxic secondary metabolites in plants"
Phytochemistry Reviews 7 467-477 (2007)

441

Sirkikantaramas S, Asano T, Sudo H, Yamazaki M, Saito K,"Camptothecin: Therapeutic potential and biotechnology"
Current Pharmaceutical Biotechnology 8 196-202 (2007)

442

Sonoda Y, Shan G, Sako K, Sato T, Kato W, Ohto M, Ichikawa T,
Matsui M, Yamaguchi j, Ikeda A, "SHA1, a novel RING finger
protein, functions in shoot apical meristem maintenance inArabidopsis" The Plant Journal 50 586-596 (2007)

443

Takahashi F, Yoshida R, Ichimura K, Mizoguchi T, Seo S, Yonezawa M, Maruyama K, Yamaguchi-Shinozaki K, Shinozaki K,"The mitogen-activated protein kinase cascade MKK3–MPK6
is an important part of the jasmonate signal transduction
pathway in Arabidopsis" The Plant Cell 19 805-818 (2007)

444

Tanaka Y, Kutsuna N, Kanazawa Y, Kondo N, Hasezawa S,
Sano T, "Intra-vacuolar reserves of membranes during stomatal closure: The possible role of guard cell vacuoles estimatedby 3-D reconstruction" Plant and Cell Physiology 48 1159-1169(2007)

445

Thao N, Chen L, Nakashima A, Hara S, Umemura K, Takahashi
A, Shirasu K, Kawasaki T, Shimamoto K, "RAR1 and HSP90
form a complex with Rac/Rop GTPase and function in innateimmune responses in rice" The Plant Cell 19 4035-4045 (2007)

446

The Rice Annotation Project, "Curated genome annotation of
Oryza sativa ssp. japonica and comparative genome analysis
with Arabidopsos thaliana" Genome Research 17 175-183(2007)

447

Tohge T, Sakakibara K, Niida R, Takahashi A, Saito K, "Phytochemical genomics in Arabidopsis thaliana: A case study for
functional identification of flavonoid biosynthesis genes"
Pure and Applied Chemistry 79 10047 (2007)

448

Tomatsu H, Takano J, Takahashi H, Takahashi A, Shibagaki N,
Fujiwara T, "An Arabidopsis thaliana high-affinity molybdate
transporter required for efficient uptake of molybdate fromsoil" Proceedings of the National Academy of Sciences of theUnited States of America 104 18807-18812 (2007)

435

Shinozaki K, "Acceleration of soybean genomics using large
collections of DNA markers for gene discovery" DNA Research
14 23533 (2007)

436

Shinozaki K, Yamaguchi-Shinozaki K, "Gene networks involved in drought stress response and tolerance" Journal of
Experimental Botany 58 221-227 (2007)

449

Tominaga R, Iwata M, Okada K, Wada T, "Functional analysisof the epidermal-specific MYB genes CAPRICE and WEREWOLF in Arabidopsis" The Plant Cell 19 2264-2277 (2007)

437

Shinya T, Hanai K, Suzuki K, Matsuoka K, Matsuoka H, Saito M,"Characterization of NtChitIV, a class IV chitinase induced byb -1,3-, 1,6-glucan elicitor from Alternaria alternata 102: Antagonistic effect of salicylic acid and methyl jasmonate on the
induction of NtChitIV" Biochemical and Biophysical ResearchCommunications 32527 (2007)

450

Tran LS, Nakashima K, Sakuma Y, Osakabe Y, Qin F, Simpson
SD, Maruyama K, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki
K, "Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis" The Plant Journal 49
46-63 (2007)

438

Shitsukawa N, Tahira C, Kassai K, Hirabayashi C, Shimizu T, Takumi S, Mochida K, Kawaura K, Ogihara Y, Murai K, "Genetic
and epigenetic alteration among three homoeologous genesof a class E MADS box gene in hexaploid wheat" The Plant

451

Tran LS, Nakashima K, Shinozaki K, Yamaguchi-Shinozaki K,"Plant gene networks in osmotic stress response: from genes
to regulatory networks" Methods in Enzymology 428 109-128(2007)

PSC Publications 2000 – 2012

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463

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Tran L-SP, Urao T, Qin F, Maruyama K, Kakimoto T, Shinozaki K,
Yamaguchi-Shinozaki K, "Functional analysis of AHK1/ATHK1
and cytokinin receptor histidine kinases in response to abscisic
acid, drought, and salt stress in Arabidopsis" Proceedingsof the National Academy of Sciences of the United States ofAmerica 104 20623-20628 (2007)
Ukitsu H, Kuromori T, Toyooka K, Goto Y, Matsuoka K, Sakuradani E, Shimizu S, Kamiya A, Imura Y, Yuguchi M, Wada T,
Hirayama T, Shinozaki K, "Cytological and biochemical analysis
of COF1, an Arabidopsis mutant of an ABC transporter gene"
Plant Cell Physiology 48 1524-1533 (2007)
Varbanova M, Yamaguchi S, Yang Y, McKelvey K, Hanada A,
Borochov R, Yu F, Jikumaru Y, Ross J, Cortes D, Ma C, Noel J,
Mander L, Shulaev V, Kamiya Y, Rodermel S, Weiss D, Pichersky
E, "Methylation of gibberellins by Arabidopsis GAMT1 andGAMT2" The Plant Cell 19 32-45 (2007)
Yamamoto Y, Ichida H, Matsui M, Obokata J, Sakurai T, Satou
M, Seki M, Shinozaki K, Abe T, "Identification of plant promoter constituents by analysis of local distribution of shortsequences" BMC Genomics 8 1-23 (2007)
Yamauchi Y, Takeda N, Hanada A, Ogawa M, Kuwahara A,
Seo M, Kamiya Y, Yamaguchi S, "Contribution of gibberellin
deactivation by AtGA2ox2 to the suppression of germinationof dark-imbibed Arabidopsis thaliana seeds" Plant Cell Physiology 48 555-561 (2007)

nozaki K, Hirai MY, Sakurai T, Kikuchi J, Saito K, "PRIMe: a
Web site that assembles tools for metabolomics and transcriptomics" In Silico Biology 8 339-345 (2008)

465

Arita M, "A pitfall of wiki solution for biological databases"
Briefings in Bioinformatics 1-2 (2008)

466

Arita M, Suwa K, "Search extension transforms Wiki into a
relational system: a case for flavonoid metabolite database"
BioData Mining 1 1-8 (2008)

467

468

469

470

Yamazaki M, "Medicinal Plant Biotechnology" Current Pharmaceutical Biotechnology 8 967 3e25-1 (2007)
Yokoyama A, Yamashino T, Amano Y, Tajima Y, Imamura A,
Sakakibara H, Mizono T, "Type-B ARR transcription factors,
ARR10 and ARR12, are implicated in cytokinin-mediated regulation of protoxylem differentiation in roots of arabidopsis
thaliana" Plant Cell Physiology 48 84-96 (2007)

471

Yoneda A, Higaki T, Kutsuna N, Kondou Y, Osada H, Hasezawa
S, Matsui M, "Chemical Genetic Screening Identifies a Novel
Inhibitor of Parallel Alignment of Cortical Microtubules andCellulose Microfibrils" Plant Cell Physiology 48 1393-1403(2007)

472

Yoshimoto N, Inoue E, Takahashi A, Saito K, Takahashi H,"Posttranscriptional regulation of high-affinity sulfate transporters in Arabidopsis by sulfur nutrition" Plant Physiology
145 378-388 (2007)
Yuan L, Loque D, Kojima S, Rauch S, Ishiyama K, Inoue E, Takahashi H, von Wiren N, "The organization of high-affinity ammonium uptake in Arabidopsis roots depends on the spatial
arrangement and biochemical properties of AMT1-type transporters" The Plant Cell 19 2636-2652 (2007)
Zentella R, Zhang Z, Park M, Thomas S, Endo A, Murase K,
Fleet C, Jikumaru Y, Nambara E, Kamiya Y, Sun T, "Global
Analysis of DELLA Direct Targets in Early Gibberellin Signalingin Arabidopsis" The Plant Cell 19 3037-3057 (2007)
Zhou G, Kubo M, Zhong R, Demura T, Ye Z, "Overexpressionof miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis"
Plant Cell Physiology 48 391-404 (2007)
Akiyama K, Chikayama E, Yuasa H, Shimada Y, Tohge T, Shi-Babiychuk E, Bouvier-Nave P, Compagnon V, Suzuki M, Muranaka T, Montagu M, Kushnir S, Schaller H, "Albinism andcell viability in cycloartenol synthase deficient Arabidopsis"
Plant Signaling & Behavior 3 978-980 (2008)
Babiychuk E, Bouvier-Nave P, Compagnon V, Suzuki M, Muranaka T, Montagu M, Kushnir S, Schaller H, "Allelic mutant
series reveal distinct functions for Arabidopsis cycloartenol
synthase 1 in cell viability and plastid biogenesis" Proceedingsof the National Academy of Sciences of the United States ofAmerica 105 3163-3168 (2008)
Cartagene J, Matsunaga S, Seki M, Kurihara D, Yokoyama M,
Shinozaki K, Fujimoto S, Azumi Y, Uchimiya S, Fukui K, "TheArabidopsis SDG4 contributes to the regulation of pollen tube
growth by methylation of histone H3 lysines 4 and 36 in mature pollen" Developmental Biology 315 355-368 (2008)
Chikayama E, Suto M, Nishihara T, Shinozaki K, Hirayama T,
Kikuchi J, "Systematic NMR Analysis of Stable Isotope Labeled
Metabolite Mixtures in Plant and Animal Systems: Coarse
Grained Views of Metabolic Pathways" PLoS One 3 e3805(2008)
Ehrlich M, Sanchez C, Shao C, Nishiyama R, Kehrl J, Kuick R,
Kubota T, Hanash S, "ICF, an immunodeficiency syndrome:
DNA methyltransferase 3B involvement, chromosome anomalies, and gene dysregulation" Autoimmunity 41 253-271(2008)
Endo A, Sawada Y, Takahashi H, Okamoto M, Seo M, Toyomasu T, Mitsuhashi W, Shinozaki K, Nakazono M, Koshiba T,
Nambara E, "Drought induction of Arabidopsis 9-cis-epoxycarotenoid dioxygenase occurs in vascular parenchyma cells"
Plant Physiology 147 1984-1993 (2008)

473

Endo S, Pesquet E, Tashiro G, Kuriyama H, Goffner D, Fukuda
H, Demura T, "Transient transformation and RNA silencing in
Zinnia tracheary element differentiating cell cultures" The
Plant Journal 53 864-875 (2008)

474

Fukushima A, Wada M, Kanaya S, Arita M, "SVD-based anatomy of gene expressions for correlation analysis in Arabidopsis
thaliana" DNA Research 15 367-374 (2008)

475

Futamura N, Totoki Y, Toyoda A, Igasaki T, Nanjo T, Seki M,
Sakaki Y, Mari A, Shinozaki K, Shinohara K, "Characterizationof expressed sequence tags from a full-length enriched cDNA
library of Cryptomeria japonica male strobili" BMC Genomics
9 383 (2008)

476

Garcia M, Myouga F, Takechi K, Sato H, Nabeshima K, Nagata
N, Takio S, Shinozaki K, Takano H, "An Arabidopsis homologof the bacterial peptidoglycan synthesis enzyme MurE has an
essential role in chloroplast development" The Plant Journal
53 924-934 (2008)

477

Goda H, Sasaki E, Akiyama K, Maruyama A, Nakabayashi K, Li
W, Ogawa M, Yamauchi Y, Preston J, Aoki K, Kiba T, Takatsuto
S, Fujioka S, Asami T, Nakano T, Kato H, Mizuno T, Sakakibara
H, Yamaguchi S, Nambara E, Kamiya Y, Takahashi H, Hirai MY,
Sakurai T, Shinozaki K, Saito K, Yoshida S, Shimada Y, "TheAtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis anddata access" The Plant Journal 55 526-542 (2008)

for identification of salt-responsive genes in common wheat"
Functional & Integrative Genomics 8 277-286 (2008)

490

Kim D, Yamaguchi S, Lim S, Oh E, Park J, Hanada A, Kamiya Y,
Choi G, "SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5" The Plant Cell 20 1260-1277 (2008)

491

Kim J, To T, Ishida J, Morosawa T, Kawashima M, Matsui A,
Toyoda T, Kimura H, Shinozaki K, Seki M, "Alterations of lysine
modifications on the histone H3 N-tail under drought stressconditions in Arabidopsis thaliana" Plant and Cell Physiology
49 1580-1588 (2008)

492

Kondou Y, Nakazawa M, Kawashima M, Ichikawa T, Yoshizumi
T, Suzuki K, Ishikawa A, Koshi T, Matsui R, Muto S, Matsui
M, "RETARDED GROWTH OF EMBRYO1, a new basic helixloop-helix protein, expresses in endosperm to control embryo
growth" Plant Physiology 147 1924-1935 (2008)

478

Hamaguchi A, Yamashino T, Koizumi N, Kiba T, Kojima M,
Sakakibara H, Mizuno T, "A small subfamily of Arabidopsis
RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-Mediated signal transduction during early morphogenesis" Bioscience Biotechnology and Biochemistry 72 2687-2696 (2008)

479

Hanada K, Zou C, Lehti-Shiu M, Shinozaki K, Shiu S, "Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli1"
Plant Physiology 148 993-1003 (2008)480

Hashimoto K, Igarashi H, Mano S, Takenaka C, Shiina T, Yamaguchi M, Demura T, Nishimura M, Shinmen T, Yokota E, "Anisoform of Arabidopsis myosin XI interacts with small GTPases
in its C-terminal tail region" Journal of Experimental Botany
59 3523-3531 (2008)

493

Kurihara Y, Matsui A, Kawashima M, Kaminuma E, Ishida J,
Morosawa T, Mochizuki Y, Kobayashi N, Toyoda T, Shinozaki
K, Seki M, "Identification of the candidate genes regulated by
RNA-directed DNA methylation in Arabidopsis" Biochemical
and Biophysical Research Communications 376 553-557 (2008)

481

Hayashi S, Ishii T, Matsunaga T, Tominaga R, Kuromori T, Wada
T, Shinozaki K, Hirayama T, "The glycerophosphoryl diester
phosphodiesterase-like proteins SHV3 and its homologs play
important roles in cell wall organization" Plant Cell Physiology
49 1522-1535 (2008)

494

Kuromori T, Azumi Y, Hayakawa S, Kamiya A, Imura Y, Wada T,
Shinozaki K, "Homologous chromosome pairing is completed
in crossover defective atzip4 mutant" Biochemical and Biophysical Research Communications 370 98-103 (2008)

482

495

Hirai MY, "A robust omics-based approach for the identification of glucosinolate biosynthetic genes" Phytochemistry Reviews 8 15-23 (2008)

Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K, "TheDDF1 transcriptional activator upregulates expression of agibberellin-deactivating gene, GA2ox7, under high-salinity
stress in Arabidopsis" The Plant Journal 56 613-626 (2008)

483

Hirai MY, Saito K, "Analysis of systemic sulfur metabolism inplants using integrated '-omics' strategies" Molecular BioSystems 4 967-973 (2008)

496

484

Hirano K, Aya K, Hobo T, Sakakibara H, Kojima M, Shim R,
Hasegawa Y, Ueguchi-Tanaka M, Matsuoka M, "Comprehensive transcriptome analysis of phytohormone biosynthesis andsignaling genes in microspore/pollen and tapetum of rice"
Plant Cell Physiology 49 1429-1450 (2008)

Matsui A, Ishida J, Morosawa T, Mochizuki Y, Kaminuma E,
Endo T, Okamoto M, Nambara E, Nakjima M, Kawashima M,
Satou M, Kim J, Kobayashi N, Toyoda T, Shinozaki K, Seki M, "Arabidopsis transcriptome analysis under drought, cold, highsalinity and ABA treatment conditions using a tiling array"
Plant Cell Physiology 49 1135-1149 (2008)

497

Matsuya A, Hanada K, Itoh T, "Evola: Ortholog database of all
human genes in H-InvDB with manual curation of phylogenetic trees" Nucleic Acids Research 36 D787-D792 (2008)

498

Mayama T, Nakano M, Uehara Y, Sano M, Fujisawa N, Okada
K, Sakai T, "Mapping of the phosphorylation sites on the phototropic signal transducer, NPH3" Plant Science 174 626-633(2008)

499

Mochida K, Saisho D, Yoshida T, Sakurai T, Shinozaki K,"TriMEDB: A database to integrate transcribed markers andfacilitate genetic studies of the tribe Triticeae" BMC Plant Biology 8 1-8 (2008)

500

Motose H, Tominaga R, Wada T, Sugiyama M, Watanabe Y, "A
NIMA-related protein kinase suppresses ectopic outgrowth of
epidermal cells through its kinase activity and the association
with microtubules" The Plant Journal 54 829-844 (2008)

501

Myouga F, Hosoda C, Umezawa T, Iizumi H, Kuromori T, Motohashi R, Shono Y, Nagata N, Ikeuchi M, Shinozaki K, "A heterocomplex of iron superoxide dismutases defends chloroplast
nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis" The Plant Cell 20 3148-

485

486

Hirose N, Takei K, Kuroha T, Nobusada T, Hayashi H, Sakakibara H, "Regulation of cytokinin biosynthesis, compartmentalization and translocation" Journal of Experimental Botany
59 75-83 (2008)
Hu J, Mitchum M, Barnaby N, Ayele B, Ogawa M, Nam E, Lai
W, Hanada A, Alonso J, Ecker J, Swain S, Yamaguchi S, Kamiya
Y, Sun T, "Potential sites of bioactive gibberellin production
during reproductive growth in Arabidopsis" The Plant Cell 20
320-336 (2008)

487

Ishida T, Kurata T, Okada K, Wada T, "A genetic regulatory
network in the development of trichomes and root hairs" Annual Review of Plant Biology 59 365-386 (2008)

488

Kadota Y, Amigues B, Ducassou L, Madaoui H, Ochsenbein
F, Guerois R, Shirasu K, "Structural and functional analysis of
SGT1-HSP90 core complex required for innate immunity inplants" EMBO Reports 9 1209-1215 (2008)

489

Kawaura K, Mochida K, Ogihara Y, "Genome-wide analysis

PSC Publications 2000 – 2012

3162 (2008)

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Nagashima A, Suzuki G, Uehara Y, Saji K, Furukawa T, Koshiba
T, Sekimoto M, Fujioka S, Kuroha T, Kojima M, Sakakibara
H, Fujisawa N, Okada K, Sakai T, "Phytochromes and cryptochromes regulate the differential growth of Arabidopsis hypocotyls in both a PGP19-dependent and a PGP19-independent
manner" The Plant Journal 53 516-529 (2008)
Nagashima A, Uehara Y, Sakai T, "The ABC subfamily B auxin
transporter AtABCB19 is involved in the inhibitory effects of N
-1-Naphthyphthalamic acid on the phototropic and gravitropic responses of Arabidopsis hypocotyls" Plant Cell Physiology
49 1250-1255 (2008)
Nakashima A, Chen L, Thao N, Fujiwara M, Wong H, Kuwano
M, Umemura K, Shirasu K, Kawasaki T, Shimamoto K, "RACK1
Functions in Rice Innate Immunity by Interacting with theRac1 Immune Complex" The Plant Cell 20 2265-2279 (2008)
Narusaka M, Kawai K, Izawa N, Seki M, Shinozaki K, Seo S,
Kobayashi M, Shiraishi T, Narusaka Y, "Gene coding for SigAbinding protein from Arabidopsis appears to be transcriptionally up-regulated by salicylic acid and NPR1-dependent
mechanisms" Journal of General Plant Pathology 74 345-354(2008)
Nobusada T, Hayashi M, Fukazawa M, Sakakibara H, Nishimura M, "A putative peroxisomal polyamine oxidase, AtPAO4,
is involved in Polyamine catabolism in Arabidopsis thaliana"
Plant Cell Physiology 49 1272-1282 (2008)
Ogata Y, Suzuki H, Sakurai N, Aoki K, Saito K, Shibata D,"Cryopreservation and metabolic profiling analysis of Arabidopsis T87 suspension-cultured cells" CryoLetters 29 427-436(2008)
Ohkama-Ohtsu N, Oikawa A, Zhao P, Xiang C, Saito K, Oliver
D, "A γ -Glutamyl transpeptidase-independent pathway of
glutathione catabolism to glutamate via 5-Oxoproline in arabidopsis" Plant Physiology 148 1603-1613 (2008)
Ohtani M, Demura T, Sugiyama M, "Differential requirement
for the function of SRD2, an snRNA transcription activator, invarious stages of plant development" Plant Molecular Biology
66 303-314 (2008)
Oikawa A, Matsuda F, Kusano M, Okazaki Y, Saito K, "RiceMetabolomics" Rice 1 63-71 (2008)
Okada K, Kasahara H, Yamaguchi S, Kawaide H, Kamiya Y, Nojiri H, Yamane H, "Genetic evidence for the role of isopentenyl
diphosphate isomerases in the mevalonate pathway and plantdevelopment in Arabidopsis" Plant Cell Physiology 49 604-616(2008)Qin F, Sakuma Y, Tran LS, Maruyama K, Kidokoro S, Fujita Y,
Fujita M, Umezawa T, Sawano Y, Miyazono K, Tanokura M,
Shinozaki K, Yamaguchi-Shinozaki K, "Arabidopsis DREB2Ainteracting proteins function as RING E3 ligases and negatively
regulate plant drought stress–responsive gene expression"
The Plant Cell 20 1693-1707 (2008)
Saito K, Hirai MY, Sakakibara K, "Decoding genes with coexpression networks and metabolomics - 'majority report byprecogs'" Trends in Plant Science 13 36-43 (2008)

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Sakai T, Honing H, Nishioka M, Uehara Y, Takahashi M, Fujisawa N, Saji K, Seki M, Shinozaki K, Jones M, Smirnoff N, Okada
K, Wasteneys G, "Armadillo repeat-containing kinesins and a
NIMA-related kinase are required for epidermal-cell morphogenesis in Arabidopsis" The Plant Journal 53 157-171 (2008)
Sakakibara K, Tohge T, Matsuda F, Nakabayashi R, Takayama H,
Niida R, Takahashi A, Inoue E, Saito K, "Comprehensive flavonol profiling and transcriptome coexpression analysis leading
to decoding gene-metabolite correlations in Arabidopsis" The
Plant Cell 20 2160-2176 (2008)
Sano R, Ogata Y, Suzuki H, Ogawa Y, Dansako T, Sakurai N,
Okazaki K, Aoki K, Saito K, Shibata D, "Over-expression oftranscription associated factor genes co-expressed with genesof the mevalonate pathway, upstream of isoprenoid biosynthesis, in Arabidopsis cultured cells" Plant Biotechnology 25
583-587 (2008)
Sano R, Suzuki H, Ogawa Y, Dansako T, Sakurai N, Okazaki K,
Aoki K, Saito K, Shibata D, "Suppression of carotenoid synthesis in transgenic Arabidopsis cultured cells over-expressing the
AHL29/SOB3 gene" Plant Biotechnology 25 573-577 (2008)

reveals the extent of tyrosine phosphorylation in Arabidopsis"
Molecular Systems Biology 1-7 (2008)

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Suzuki H, Sasaki R, Ogata Y, Nakamura Y, Sakurai N, Kitajima M,
Takayama H, Kanaya S, Aoki K, Shibata D, Saito K, "Metabolic
profiling of flavonoids in Lotus japonicus using liquid chromatography Fourier transform ion cyclotron resonance mass
spectrometry" Phytochemistry 69 99-111 (2008)
Taji T, Sakurai T, Mochida K, Ishiwata A, Kurotani A, Totoki
Y, Toyoda A, Sakaki Y, Seki M, Ono H, Sakata Y, Tanaka S,
Shinozaki K, "Large-scale collection and annotation of fulllength enriched cDNAs from a model halophyte, Thellungiellahalophila" BMC Plant Biology 8 115 (2008)
Takahashi N, Maes S, Lammens T, Yoshizumi T, De Jaeger G,
Wittens E, Inze D, De Veylder L, "The DNA replication checkpoint aids survival of plants deficient in the novel replisome
factor ETG1" The EMBO Journal 27 1840-1851 (2008)
Takano K, Toyooka K, Suetsugu S, "EFC/F-BAR proteins andthe N-WASP-WIP complex induce membrane curvaturedependent actin polymerization" The EMBO Journal 27 28172828 (2008)

Sato S, Arita M, Soga T, Nishioka T, Tomita M, "Time-resolved
metabolomics reveals metabolic modulation in rice foliage"
BMC Systems Biology 1-13 (2008)

531

Sawada Y, Aoki M, Nakaminami K, Mitsuhashi W, Tatematsu K,
Kushiro T, Koshiba T, Kamiya Y, Inoue Y, Nambara E, Toyomasu
T, "Phytochrome- and gibberellin-mediated regulation of
abscisic acid metabolism during germination of photoblastic
lettuce seeds" Plant Physiology 146 1386-1396 (2008)

Tatematsu K, Nakabayashi K, Kamiya Y, Nambara E, "Transcription factor AtTCP14 regulates embryonic growth potential during seed germination in Arabidopsis thaliana" The
Plant Journal 53 42-52 (2008)

532

Toh S, Imamura A, Watanabe A, Nakabayashi K, Okamoto M,
Jikumaru Y, Hanada A, Aso Y, Ishiyama K, Tamura N, Iuchi S,
Kobayashi M, Yamaguchi S, Kamiya Y, Nambara E, Kawakami
N, "High temperature-induced abscisic acid biosynthesis andits role in the inhibition of gibberellin action in Arabidopsis
seeds" Plant Physiology 146 1368-1385 (2008)

Seki H, Ohyama K, Sawai S, Mizutani M, Ohnishi T, Sudo H,
Akashi T, Aoki T, Saito K, Muranaka T, "Licorice β -amyrin
11-oxidase, a cytochrome P450 with a key role in the biosynthesis of the triterpene sweetener glycyrrhizin" PNAS 105
14204-9 (2008)
Seo M, Nambara E, Choi G, Yamaguchi S, "Interaction of lightand hormone signals in germinating seeds" Plant Molecular
Biology 1-10 (2008)
Shimizu H, Peng L, Myouga F, Motohashi R, Shinozaki K,
Shikanai T, "CRR23/NdhL is a subunit of the chloroplast
NAD(P)H dehydrogenase complex in Arabidopsis" Plant andCell Physiology 49 835-842 (2008)
Sirikantaramas S, Yamazaki M, Saito K, "Mutations in topoisomerase I as a self-resistance mechanism coevolved with the
production of the anticancer alkaloid camptothecin in plants"
Proceedings of the National Academy of Sciences of the United States of America 105 6782-6786 (2008)
Sudo E, Itouga M, Yoshida K, Ono Y, Sakakibara H, "Geneexpression and sensitivity in response to copper stress in rice
leaves" Journal of Experimental Botany 59 3465-3474 (2008)
Sugawara H, Ueda N, Kojima M, Makita N, Yamaya T, Sakakibara H, "Structural insight into the reaction mechanism andevolution of cytokinin biosynthesis" Proceedings of the National Academy of Sciences of the United States of America
105 2734-2739 (2008)
Sugiyama N, Nakagami H, Mochida K, Daudi A, Tomita M,
Shirasu K, Ishihama Y, "Large-scale phosphorylation mapping

533

Tokuda M, Yang M, Yukawa J, "Taxonomy and molecular phylogeny of Daphnephila gall midges (Diptera: Cecidomyiidae)
inducing complex leaf galls on Lauraceae, with descriptions offive new species associated with Machilus thunbergii in Taiwan" Zoological Science 25 533-545 (2008)

534

Tominaga R, Iwata M, Sano R, Inoue K, Okada K, Wada T, "Arabidopsis CAPRICE-LIKE MYB 3 (CPL3) controls endoreduplication and flowering development in addition to trichomeand root hair formation" Development 135 1335-1345 (2008)

535

Trujillo M, Ichimura K, Casais C, Shirasu K, "Negative Regulation of PAMP-Triggered Immunity by an E3 Ubiquitin Ligase
Triplet in Arabidopsis" Current Biology 18 1396-1401 (2008)

536

Umehara M, Hanada A, Yoshida S, Akiyama K, Arite T, Takeda
N, Magome H, Kamiya Y, Shirasu K, Yoneyama K, Kyozuka J,
Yamaguchi S, "Inhibition of shoot branching by new terpenoid plant hormones" Nature 455 195-200 (2008)

537

Umezawa T, Sakurai T, Totoki Y, Toyoda A, Seki M, Ishiwata
A, Akiyama K, Kurotani A, Yoshida T, Mochida K, Kasuga M,
Todaka D, Maruyama K, Nakashima K, Enju A, Mizukado S,
Ahmed S, Yoshiwara K, Harada K, Tsubokura Y, Hayashi M,
Sato S, Anai T, Ishimoto M, Funatsuki H, Teraishi M, Osaki M,
Shinano T, Akashi R, Sakaki Y, Yamaguchi-Shinozaki K, Shinozaki K, "Sequencing and analysis of approximately 40 000 soybean cDNA clones from a full-length-enriched cDNA library"
DNA Research 15 333-346 (2008)

538

Wangwattana B, Koyama Y, Nishiyama Y, Kitayama M,
Yamazaki M, Saito K, "Characterization of PAP1-upregulated
glutathione S-transferase genes in Arabidopsis thaliana" Plant
Biotechnology 25 191-196 (2008)

539

Watanabe M, Kusano M, Oikawa A, Fukushima A, Noji M,
Saito K, "Physiological roles of the β -substituted alanine synthase gene family in Arabidopsis" Plant Physiology 146 310320 (2008)

540

Watanabe M, Mochida K, Kato T, Tabata S, Yoshimoto N, Noji
M, Saito K, "Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis" The Plant Cell 20 2484-2496(2008)

541

Yamaguchi M, Kubo M, Fukuda H, Demura T, "VASCULARRELATED NAC-DOMAIN7 is involved in the differentiation of
all types of xylem vessels in Arabidopsis roots and shoots" The
Plant Journal 55 652-664 (2008)

542

Yamaguchi S, "Gibberellin metabolism and its regulation" Annual Review of Plant Biology 59 225-251 (2008)

543

Yamazaki M, Shibata M, Nishiyama Y, Springob K, Kitayama
M, Shimada N, Aoki T, Ayabe S, Saito K, "Differential gene expression profiles of red and green forms of Perilla frutescens
leading to comprehensive identification of anthocyanin biosynthetic genes" FEBS Journal 275 3494-3502 (2008)

544

Yokotani N, Ichikawa T, Kondou Y, Matsui M, Hirochika H,
Iwabuchi M, Oda K, "Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental
stresses in transgenic Arabidopsis" Planta 227 957-967 (2008)

545

Yoshida T, Sakuma Y, Todaka D, Maruyama K, Qin F, Mizoi
J, Kidokoro S, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K,"Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstreamof the DREB2A stress-regulatory system" Biochemical and Biophysical Research Communications 368 515-521 (2008)

546

Zhang M, Boter M, Li K, Kadota Y, Panaretou B, Prodromou
C, Shirasu K, Pearl L, "Structural and functional coupling of
Hsp90- and Sgt1-centred multi-protein complexes" The EMBO
Journal 27 2789-2798 (2008)

547

Abe K, Osakabe K, Ishikawa Y, Tagiri A, Yamanouchi H, Takyuu
T, Yoshioka T, Ito T, Kobayashi M, Shinozaki K, Ichikawa H,
Toki S, "Inefficient double-strand DNA break repair is associated with increased fasciation in Arabidopsis BRCA2 mutants"
Journal of Experimental Botany 60 2751-2761 (2009)

548

Albinsky D, Kusano M, Higuchi M, Hayashi N, Kobayashi M,
Fukushima A, Mori M, Ichikawa T, Matsui K, Kuroda H, Horii
Y, Tsumoto Y, Sakakibara H, Hirochika H, Matsui M, Saito K,"Metabolomic Screening Applied to Rice FOX Arabidopsis
Lines Leads to the Identification of a Gene-Changing Nitrogen
Metabolism" Molecular Plant 1-18 (2009)549

Ara T, Sakurai N, Tange Y, Morishita Y, Suzuki H, Aoki K, Saito K,
Shibata D, "Improvement of the quantitative differential metabolome pipeline for gas chromatography-mass spectrometry
data by automated reliable peak selection" Plant Biotechnology 26 445-449 (2009)

550

Arita M, "What can metabolomics learn from genomics andPSC Publications 2000 – 2012

H, Matsui M, "Simple construction of plant RNAi vectors using
long oligonucleotides" Journal of Plant Research 122 477-482(2009)

proteomics?" Current Opinion in Biotechnology 20 610-615(2009)

551

552

553

554

555

556

557

558

559

560

561

562

563

Arite T, Umehara M, Ishikawa S, Hanada A, Maekawa M,
Yamaguchi S, Kyozuka J, "d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers" Plant
and Cell Physiology 50 1416-1424 (2009)
Breuer C, Kawamura A, Ichikawa T, Wada-Tominaga R, Wada T,
Kondou Y, Muto S, Matsui M, Sugimoto K, "The Trihelix Transcription Factor GTL1 regulates ploidy-dependent Cell Growthin the Arabidopsis Trichome" The Plant Cell 21 2307-2322(2009)
Cuadros-Inostroza A, Caldana C, Redestig H, Kusano M, Lisec J,
Pena-Cortes H, Willmitzer L, Hannah M, "TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS
metabolite profiling data" BMC Bioinformatics 10 428 (2009)
Fujita Y, Nakashima K, Yoshida T, Katagiri T, Kidokoro S,
Kanamori N, Umezawa T, Fujita M, Maruyama K, Ishiyama
K, Kobayashi M, Nakasone S, Yamada K, Ito T, Shinozaki K,
Yamaguchi-Shinozaki K, "Three SnRK2 protein kinases are themain positive regulators of abscisic acid signaling in response
to water stress in Arabidopsis" Plant and Cell Physiology 50
2123-2132 (2009)

564

565

566

567

568

Fukushima A, Kanaya S, Arita M, "Characterizing gene coexpression modules in Oryza sativa based on a graph-clustering
approach" Plant Biotechnology 26 485-493 (2009)
Fukushima A, Kusano M, Nakamichi N, Kobayashi M, Hayashi
N, Sakakibara H, Mizuno T, Saito K, "Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination" Proceedings of the National Academy of Sciences of
the United States of America 106 7251-7256 (2009)
Fukushima A, Kusano M, Redestig H, Arita M, Saito K, "Integrated omics approaches in plant systems biology" Current
Opinion in Chemical Biology 13 532-538 (2009)
Hanada K, Kuromori T, Myouga F, Toyoda T, Li W, Shinozaki K,"Evolutionary Persistence of Functional Compensation by Duplicate Genes in Arabidopsis" Genome Biology and Evolution
1 409-414 (2009)

569

570

571

Hanada K, Kuromori T, Myouga F, Toyoda T, Shinozaki K, "Increased expression and protein divergence in duplicate genes
is associated with morphological diversification" PLoS Genetics 5 e1000781 (2009)
Hanada K, Vallejo V, Nobuta K, Slotkin K, Lisch D, Meyers B,
Shiu S, Jiang N, "The functional role of Pack-MULEs in riceinferred from purifying selection and expression profile" The
Plant Cell 1 25-38 (2009)

572

Hasegawa Y, Arita M, "Properties of the maximum q-likelihood estimator for independent random variables" Physica A
388 3399-3412 (2009)
Higuchi M, Ozaki H, Matsui M, Sonoike K, "A T-DNA insertion
mutant of AtHMA1 gene encoding a Cu transporting ATPasein Arabidopsis thaliana has a defect in the water-water cycleof photosynthesis" Journal of Photochemistry and Photobiology B: Biology 94 205-213 (2009)

573

Higuchi M, Yoshizumi T, Kuriyama T, Hara H, Akagi C, Shimada

574

Igawa T, Fujiwara M, Takahashi H, Sawasaki T, Endo Y, Seki M,
Shinozaki K, Fukao Y, Yanagawa Y, "Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings"
Journal of Experimental Botany 60 3067-3073 (2009)
Ikegami k, Okamoto M, Seo M, Koshiba T, "Activation of abscisic acid biosynthesis in the leaves of Arabidopsis thaliana in
response to water deficit" Journal of Plant Research 122 235243 (2009)
Ishida T, Fujiwara S, Miura K, Stacey N, Yoshimura M, Schneider K, Adachi S, Minamisawa K, Umeda M, Sugimoto K,"SUMO E3 Ligase HIGH PLOIDY2 Regulates Endocycle Onsetand Meristem Maintenance in Arabidopsis" The Plant Cell 212284-2297 (2009)
Ito-Inaba Y, Sato M, Masuko H, Hida Y, Toyooka K, Watanabe
M, Inaba T, "Developmental changes and organelle biogenesis in the reproductive organs of thermogenic skunk cabbage(Symplocarpus renifolius)" Journal of Experimental Botany 60
3909-3922 (2009)
Kawakatsu T, Taramino G, Itoh J, Allen J, Sato Y, Hong S, Yule
R, Nagasawa N, Kojima M, Kusaba M, Sakakibara H, Sakai H,
Nagato Y, "PLASTOCHRON3/GOLIATH encodes a glutamate
carboxypeptidase required for proper development in rice"
The Plant Journal 58 1028-1040 (2009)

rosawa T, Tanaka M, Kaminuma E, Mochizuki Y, Matsushima A,
Toyoda T, Shinozaki K, Seki M, "Genome-wide suppression ofaberrant mRNA-like noncoding RNAs by NMD in Arabidopsis" Proceedings of the National Academy of Sciences of theUnited States of America 106 2453-2458 (2009)575

Kuromori T, Takahashi S, Kondou Y, Shinozaki K, Matsui M,"Phenome analysis in plant species using loss-of-function andgain-of-function mutants" Plant and Cell Physiology 50 12151231 (2009)576

Lee B, Johnston R, Yang Y, Gallavotti A, Kojima M, Travencolo B, Costa L, Sakakibara H, David J, "Studies of aberrant
phyllotaxy1 mutants of maize indicate complex interactions
between Auxin and Cytokinin signaling in the shoot apicalmeristem" Plant Physiology 150 205-216 (2009)

577

Lehti-Shiu M, Cheng Z, Hanada K, Shiu S, "Evolutionary History and Stress Regulation of Plant Receptor-Like Kinase/Pelle
Genes" Plant Physiology 150 12-16 (2009)

578

Maruyama K, Takeda M, Kidokoro S, Yamada K, Sakuma Y,
Urano K, Fujita M, Yoshiwara K, Matsukura S, Morishita Y, Sasaki R, Suzuki H, Saito K, Shibata D, Shinozaki K, YamaguchiShinozaki K, "Metabolic pathways involved in cold acclimation
identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A" Plant Physiology
150 1972-1980 (2009)

587

Mochida K, Yoshida T, Sakurai T, Yamaguchi-Shinozaki K, Shinozaki K, Tran L-SP, "In silico analysis of transcription factor
repertoire and prediction of stress responsive transcription
factors in soybean" DNA Research 16 353-369 (2009)

588

Morioka R, Arita M, Sakamoto K, Kawaguchi S, Tei H, Horimoto K, "Period-phase map: two-dimensional selection of circadian rhythm-related genes" IET System Biology 3 487-495(2009)

589

Mugford S, Yoshimoto N, Reichelt M, Wirtz M, Hill L, Mugford
S, Nakazato Y, Noji M, Takahashi H, Kramell R, Gigolashvili T,
Flugge U, Wasternack C, Gershenzon J, Hell R, Saito K, Kopriva
S, "Disruption of Adenosine-5'-Phosphosulfate Kinase in Arabidopsis Reduces Levels of Sulfated Secondary Metabolites"
The Plant Cell 21 910-927 (2009)

590

Nakabayashi R, Kusano M, Kobayashi M, Tohge T, Sakakibara
K, Kogure N, Yamazaki M, Kitajima M, Saito K, Takayama H,"Metabolomics-oriented isolation and structure elucidation of
37 compounds including two anthocyanins from Arabidopsis
thaliana" Phytochemistry 70 1017-1029 (2009)

591

Nakamichi N, Fukushima A, Kusano M, Sakakibara H, Takeshi
M, Saito K, "Linkage between circadian clock and tricarboxylic
acid cycle in Arabidopsis" Plant Signaling & Behavior 4 660662 (2009)

592

Nakamichi N, Kusano M, Fukushima A, Kita M, Ito S, Yamashino T, Saito K, Sakakibara H, Mizuno T, "Transcript profiling ofan Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic
triple mutant reveals a role for the circadian clock in cold
stress response" Plant Cell Physiology 50 447-462 (2009)

593

Nakashima K, Fujita Y, Kanamori N, Katagiri T, Umezawa T,
Kidokoro S, Maruyama K, Yoshida T, Ishiyama K, Kobayashi
M, Shinozaki K, Yamaguchi-Shinozaki K, "Three Arabidopsis
SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1and SRK2I/SnRK2.3, involved in ABA signaling are essential forthe control of seed development and dormancy" Plant andCell Physiology 50 1345-1363 (2009)

594

Nambara E, Yamagishi K, Tatematsu K, Nakabayashi K, Kamiya Y, "Nitrate responses of Arabidopsis cho1 mutants: Obvious
only when excess nitrate is supplied" Plant Signaling & Behavior 4 1166-1168 (2009)

579

Matsuda F, Hirai MY, Sasaki E, Akiyama K, Sakakibara K, Provart N, Sakurai T, Saito K, "AtMetExpress Development: A
Phytochemical Atlas of Arabidopsis Development" Plant Physiology 152 566-578 (2009)

580

Matsuda F, Redestig H, Sawada Y, Shinbo Y, Hirai MY, Kanaya S,
Saito K, "Visualization of metabolite identifier information"
Plant Biotechnology 26 479-483 (2009)

581

Matsuda F, Sakakibara K, Niida R, Kuromori T, Shinozaki K,
Saito K, "MS/MS spectral tag (MS2T)-based annotation of nontargeted profile of plant secondary metabolites" The Plant
Journal 57 555-77 (2009)

Kondou Y, Higuchi M, Takahashi S, Sakurai T, Ichikawa T,
Kuroda H, Yoshizumi T, Tsumoto Y, Horii Y, Kawashima M,
Hasegawa Y, Kuriyama T, Matsui K, Kusano M, Albinsky D,
Takahashi H, Tsuchiya Y, Suzuki M, Sakakibara H, Kojima M,
Akiyama K, Kurotani A, Seki M, Fujita M, Enju A, Yokotani N,
Saitou T, Ashidate K, Fujimoto N, Ishikawa Y, Mori Y, Nanba R,
Takata K, Uno K, Sugano S, Natsuki J, Dobouzet J, Maeda S,
Ohtake M, Mori M, Oda K, Takatsuji H, Hirochika H, Matsui M,"Systematic approaches to using the FOX hunting system toidentify useful rice genes" The Plant Journal 57 883-894 (2009)

582

Matsuda F, Shinbo Y, Oikawa A, Hirai MY, Fiehn O, Kanaya S,
Saito K, "Assessment of Metabolome Annotation Quality: A
Method for Evaluating the False Discovery Rate of Elemental
Composition Searches" PLoS One 4 e7490 (2009)

583

595

Matsukura K, Matsumura M, Takeuchi H, Endo N, Tokuda
M, "Distribution, host plants, and seasonal occurrence of themaize orange leafhopper, Cicadulina bipunctata (Melichar)(Homoptera: Cicadellidae), in Japan" Applied Entomology
and Zoology 44 207-214 (2009)

Narusaka M, Shirasu K, Noutoshi Y, Kubo Y, Shiraishi T, Iwabuchi M, Narusaka Y, "RRS1 and RPS4 provide a dual Resistance-gene system against fungal and bacterial pathogens" The
Plant Journal 60 218-226 (2009)

596

Kurasawa K, Matsui A, Yokoyama R, Kuriyama T, Yoshizumi T,
Matsui M, Suwabe K, Watanabe M, Nishitani K, "The AtXTH28
gene, a xyloglucan endotransglucosylase/hydrolase, is involvedin automatic self-pollination in Arabidopsis thaliana" Plant
Cell Physiology 50 413-422 (2009)

584

Matsukura K, Matsumura M, Tokuda M, "Host manipulationby the orange leafhopper Cicadulina bipunctata: gall induction on distant leaves by dose-dependent stimulation" Naturwissenschaften 96 1059-1066 (2009)

Nemoto K, Hara M, Goto S, Kasai K, Seki H, Suzuki M, Oka
A, Muranaka T, Mano Y, "The aux1 gene of the Ri plasmid issufficient to confer auxin autotrophy in tobacco BY-2 cells"
Journal of Plant Physiology 166 729-738 (2009)

597

Nemoto K, Hara M, Suzuki M, Seki H, Muranaka T, Mano Y,"The NtAMI1 gene functions in cell division of tobacco BY-2
cells in the presence of indole-3-acetamide" FEBS Letters 583
487-492 (2009)

598

Nobusada T, Sakakibara H, "Molecular basis for cytokinin biosynthesis" Phytochemistry 70 444-449 (2009)599

Nozawa A, Matsubara Y, Tanaka Y, Takahashi H, Akagi T, Seki
M, Shinozaki K, Endo Y, Sawasaki T, "Construction of a protein

Kawashima C, Yoshimoto N, Maruyama-Nakashita A, Tsuchiya
Y, Saito K, Takahashi H, Dalmay T, "Sulphur starvation induces
the expression of microRNA-395 and one of its target genes
but in different cell types" The Plant Journal 57 313-321 (2009)
Kidokoro S, Maruyama K, Nakashima K, Imura Y, Narusaka Y,
Shinwari Z, Osakabe Y, Fujita Y, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K, "The phytochrome-interacting factor PIF7
negatively regulates DREB1 expression under circadian control
in Arabidopsis" Plant Physiology 151 2046-2057 (2009)

Kurihara Y, Kaminuma E, Matsui A, Kawashima M, Tanaka
M, Morosawa T, Ishida J, Mochizuki Y, Shinozaki K, Toyoda T,
Seki M, "Transcriptome analyses revealed diverse expression
changes in ago1 and hyl1 Arabidopsis mutants" Plant and Cell
Physiology 50 1715-1720 (2009)
Kurihara Y, Matsui A, Hanada K, Kawashima M, Ishida J, Mo-

585

Mochida K, Furuta T, Ebana K, Shinozaki K, Kikuchi J, "Correlation exploration of metabolic and genomic diversity in rice"
BMC Genomics 10 1-10 (2009)

586

Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K, "TriFLDB: A database of clustered full-length coding sequencesfrom triticeae with applications to comparative grass genomics" Plant Physiology 150 1135-1146 (2009)

PSC Publications 2000 – 2012library of Arabidopsis transcription factors using a wheat cellfree protein production system and its application for DNA
binding analysis" Bioscience Biotechnology and Biochemistry
73 1661-1664 (2009)

600

Ogata Y, Sakurai N, Aoki K, Suzuki H, Okazaki K, Saito K,
Shibata D, "KAGIANA: An Excel-based tool for retrieving summary information on Arabidopsis genes" Plant Cell Physiology
50 173-177 (2009)

601

Oh E, Kang H, Yamaguchi S, Park J, Lee D, Kamiya Y, Choi G,"Genome-wide analysis of genes targeted by PHYTOCHROME
INTERACTING FACTOR 3-LIKE5 during seed germination in
Arabidopsis" The Plant Cell 201 403-419 (2009)

602

Ohyama K, Suzuki M, Kikuchi J, Saito K, Muranaka T, "Dualbiosynthetic pathways to phytosterol via cycloartenol and lanosterol in Arabidopsis" PNAS 106 725-730 (2009)

603

604

Okamoto M, Hanada A, Kamiya Y, Yamaguchi S, Nambara E,"Measurement of Abscisic Acid and Gibberellins by Gas Chromatography/Mass Spectrometry" Methods in Molecular Biology 495 53-60 (2009)
Okamoto M, Tanaka Y, Abrams S, Kamiya Y, Seki M, Nambara E,"High humidity induces abscisic acid 8'-hydroxylase in stomata
and vasculature to regulate local and systemic abscisic acidresponses in Arabidopsis" Plant Physiology 149 825-834 (2009)

605

Okamoto M, Tsuboi Y, Chikayama E, Kikuchi J, Hirayama T,"Metabolic movement upon abscisic acid and salicylic acidcombined treatments" Plant Biotechnology 26 551-560 (2009)

606

Okazaki Y, Shimojima M, Sawada Y, Toyooka K, Narisawa T,
Mochida K, Tanaka H, Matsuda F, Hirai A, Hirai MY, Ohta H,
Saito K, "A Chloroplastic UDP-Glucose Pyrophosphorylasefrom Arabidopsis Is the Committed Enzyme for the First Stepof Sulfolipid Biosynthesis" The Plant Cell 21 892-909 (2009)

607

608

609

610

611

Okuda K, Chateigner-Boutin A, Nakamura T, Delannoy E, Sugita M, Myouga F, Motohashi R, Shinozaki K, Small I, Shikanai T,"Pentatricopeptide repeat proteins with the DYW motif havedistinct molecular functions in RNA editing and RNA cleavage
in Arabidopsis chloroplasts" The Plant Cell 21 146-156 (2009)
Orlova I, Nagegowda D, Kish C, Gutensohn M, Maeda H,
Varbanova M, Fridman E, Krichevsky A, Yamaguchi S, Hanada
A, Kamiya Y, Citovsky V, Pichersky E, Dudareva N, "The small
subunit of snapdragon geranyl diphosphate synthase modifies
the chain length specificity of tobacco geranylgeranyl diphosphate synthase in planta" The Plant Cell 21 4002-4017 (2009)
Preston J, Tatematsu K, Kanno Y, Hobo T, Kimura M, Jikumaru
Y, Yano R, Kamiya Y, Nambara E, "Temporal expression patterns of hormone metabolism genes during imbibition of Arabidopsis thaliana seeds: a comparative study on dormant andnon-dormant accessions" Plant and Cell Physiology 50 17861800 (2009)
Redestig H, Fukushima A, Stenlund H, Moritz T, Arita M, Saito
K, Kusano M, "Compensation for systematic cross-contribution
improves normalization of mass spectrometry based metabolomics data" Analytical Chemistry 81 7974-7980 (2009)
Rubin G, Tohge T, Matsuda F, Saito K, Scheible W, "Membersof the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in

The coevolution of the camptothecin biosynthetic pathway
and self-resistance mechanism" Phytochemistry 70 1894-1898(2009)

Arabidopsis" The Plant Cell 21 3567-3584 (2009)

612

Sakakibara K, "Functional genomics of family 1 glycosyltransferases in Arabidopsis" Plant Biotechnology 26 267-274 (2009)

613

Sakakibara K, Saito K, "Functional genomics for plant natural
product biosynthesis" Natural Product Reports 26 1466-1487(2009)

614

Sato A, Sato Y, Fukao Y, Fujiwara M, Umezawa T, Shinozaki K,
Hibi T, Taniguchi M, Miyake H, Goto D, Uozumi N, "Threonine
at position 306 of the KAT1 potassium channel is essential forchannel activity and is a target site for ABA-activated SnRK2/
OST1/SnRK2.6 protein kinase" Biochemical Journal 424 439448 (2009)

615

Sato K, Shin-l T, Seki M, Shinozaki K, Yoshida H, Takeda K,
Yamazaki Y, Conte M, Kohara Y, "Development of 5006 fulllength cDNAs in barley: A tool for accessing cereal genomics
resources" DNA Research 16 81-89 (2009)

616

Sato M, Mogi Y, Nishikawa T, Miyamura S, Nagumo T, Kawano
S, "The dynamic surface of dividing cyanelles and ultrastructure of the region directly below the surface in Cyanophoraparadoxa" Planta 229 781-791 (2009)

617

618

619

620

Tsutsui T, Kato W, Asada Y, Sako K, Sato T, Sonoda Y, Kidokoro
S, Yamaguchi-Shinozaki K, Tamaoki M, Arakawa K, Ichikawa T,
Nakazawa M, Seki M, Shinozaki K, Matsui M, Ikeda A, Yamaguchi J, "DEAR1, a transcriptional repressor of DREB proteinthat mediates plant defense and freezing stress responses in
Arabidopsis" Journal of Plant Research 122 633-643 (2009)

629

Suzuki M, Nakagawa S, Kamide Y, Kobayashi K, Ohyama K,
Hashinokuchi H, Kiuchi R, Saito K, Muranaka T, Nagata N,"Complete blockage of the mevalonate pathway results inmale gametophyte lethality" Journal of Experimental Botany
60 2055-2064 (2009)

642

Takahashi H, kawazoe M, Wada M, Hirai A, Nakamura K, Md.
Altaf-Ul A, Sawada Y, Hirai MY, Kanaya S, "KNApSAcK geneclassification system for Arabidopsis thaliana: Comparative
genomic analysis of unicellular to seed plants" Plant Biotechnology 26 509-516 (2009)

Uchida H, Yamashita H, Kajiwara M, Ohyama K, Nakayachi O,
Sugiyama R, Yamato K, Muranaka T, Fukuzawa H, Takemura
M, Ohyama K, "Cloning and characterization of a squalene
synthase gene from a petroleum plant, Euphorbia tirucalli L."
Planta 229 1243-1252 (2009)643

Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F,
Yamaguchi-Shinozaki K, Ishihama Y, Hirayama T, Shinozaki K,"Type 2C protein phosphatases directly regulate abscisic acidactivated protein kinases in Arabidopsis" Proceedings of the
National Academy of Sciences of the United States of America
106 17588-17593 (2009)644

Urano K, Maruyama K, Ogata Y, Morishita Y, Takeda M, Sakurai N, Suzuki H, Saito K, Shibata D, Kobayashi M, YamaguchiShinozaki K, Shinozaki K, "Characterization of the ABAregulated global responses to dehydration in Arabidopsis bymetabolomics" The Plant Journal 57 1065-1078 (2009)645

Yamamoto Y, Yoshitsugu T, Sakurai T, Seki M, Shinozaki K,
Obokata J, "Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis" The Plant Journal 60 350362 (2009)

646

Yano R, Kanno Y, Jikumaru Y, Nakabayashi K, Kamiya Y,
Nambara E, "CHOTTO1, a putative double APETALA2 repeat
transcription factor, is involved in abscisic acid-mediated repression of gibberellin biosynthesis during seed germinationin Arabidopsis" Plant Physiology 151 641-654 (2009)647

Yokotani N, Ichikawa T, Kondou Y, Matsui M, Hirochika H,
Iwabuchi M, Oda K, "Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance
to abiotic and biotic stresses in transgenic Arabidopsis" Plant
Molecular Biology 71 391-402 (2009)648

Yoshida S, Shirasu K, "Multiple layers of incompatibility to theparasitic witchweed, Striga hermonthica" New Phytologist
183 180-189 (2009)649

Yoshida Y, Sano R, Wada T, Takabayashi J, Okada K, "Jasmonicacid control of GLABRA3 links inducible defense and trichome
patterning in Arabidopsis" Development 136 1039-1048(2009)

631

Takahashi H, Nozawa A, Seki M, Shinozaki K, Endo Y, Sawasaki T, "A simple and high-sensitivity method for analysis ofubiquitination and polyubiquitination based on wheat cellfree protein synthesis" BMC Plant Biology 9 1-11 (2009)

632

Takemoto K, Arita M, "Heterogeneous distribution of metabolites across plant species" Physica A 388 2771-2780 (2009)

633

Takeuchi M, Kawahata H, Gupta L, Itouga M, Sakakibara H,
Ohta H, Komai T, Ono Y, "Chemistry of fly ash and cyclone ash
leachate from waste materials and effects of ash leachates onbacterial growth, nitrogen-transformation activity, and metal
accumulation" Jounal of Hazardous Materials 165 967-973(2009)

634

Titapiwatanakun B, Blakeslee J, Bandyopadhyay A, Yang H,
Mravec J, Sauer M, Cheng Y, Adamec J, Nagashima A, Geisler
M, Sakai T, Friml J, Peer W, Murphy A, "ABCB19/PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis" The Plant
Journal 57 27-44 (2009)

Shinozaki K, Sakakibara H, "Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond2010" Plant and Cell Physiology 50 1177-1180 (2009)635

Shirasu K, "The HSP90-SGT1 Chaperone Complex for NLR Immune Sensors" Annual Review of Plant Biology 60 139-164(2009)

Tojo T, Tsuda K, Yoshizumi T, Ikeda A, Yamaguchi J, Matsui M,
Yamazaki K, "Arabidopsis MBF1s control leaf cell cycle and its
expansion" Plant Cell Physiology 50 254-264 (2009)

636

Tominaga R, Iwata M, Sugiyama J, Kotake T, Ishida T, Yokoyama R, Nishitani K, Okada K, Wada T, "The GLABRA2 homeodomain protein directly regulates CESA5 and XTH17 gene
expression in Arabidopsis roots" The Plant Journal 60 564-574(2009)

Sirikantaramas S, Yamazaki M, Saito K, "A survival strategy:

641

Sugita M, Nakano K, Sato M, Toyooka K, Numata O, "Theroles of actin cytoskeleton and microtubules for membrane
recycling of a food vacuole in Tetrahymena thermophila" Cell
Motility and the Cytoskeleton 66 371-377 (2009)

622

625

Tsunekawa K, Shijuku T, Hayashimoto M, Kojima Y, Onai K,
Morishita M, Ishiura M, Kuroda T, Nakamura T, Kobayashi H,
Sato M, Toyooka K, Matsuoka K, Omata T, Uozumi N, "Identification and characterization of the NA+/H+ antiporter NHAS3
from the thylakoid membrane of Synechocystis sp. PCC 6803"
The Journal of Biological Chemistry 284 16513-16521 (2009)

628

Sawada Y, Kuwahara A, Nagano M, Narisawa T, Sakata A,
Saito K, Hirai MY, "Omics-based approaches to methionine
side chain elongation in Arabidopsis: characterization of thegenes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase" Plant Cell Physiology 50
1181-1190 (2009)

Shoji T, Inai K, Yazaki Y, Sato Y, Takase H, Shitan N, Yazaki K,
Goto Y, Toyooka K, Matsuoka K, Hashimoto T, "Multidrug
and Toxic Compound Extrusion-Type Transporters Implicatedin Vacuolar Sequestration of Nicotine in Tobacco Roots" Plant
Physiology 149 708-718 (2009)

640

Sugawara S, Hishiyama S, Jikumaru Y, Hanada A, Nishimura T,
Koshiba T, Zhao Y, Kamiya Y, Kasahara H, "Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis
in Arabidopsis" Proceedings of the National Academy of Sciences of the United States of America 106 5430-5435 (2009)

Seki M, Shinozaki K, "Functional genomics using RIKEN Arabidopsis thaliana full-length cDNAs" Journal of Plant Research
122 355-366 (2009)624

Tran LS, Quach TN, Guttikonda SK, Aldrich DL, Kumar R,
Neelakandan A, Valliyodan B, Nguyen HT, "Molecular characterization of stress-inducible GmNAC genes in soybean"
Molecular Genetics and Genomics 281 647-664 (2009)

627

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623

639

Sudo H, Seki H, Sakurai N, Suzuki H, Shibata D, Toyoda A,
Totoki Y, Sakaki Y, Iida O, Shibata T, Kojima M, Muranaka T,
Saito K, "Expressed sequence tags from rhizomes of Glycyrrhiza uralensis" Plant Biotechnology 26 105-107 (2009)

630

Seki M, Kamiya A, Carninci P, Hayashizaki Y, Shinozaki K,"Generation of full-length cDNA libraries: focus on plants"
Methods in Molecular Biology 533 49-68 (2009)

Toyooka K, Matsuoka K, "Exo- and endocytotic trafficking of
SCAMP2" Plant Signaling & Behavior 4 1196-1198 (2009)

626

Sawada Y, Akiyama K, Sakata A, Kuwahara A, Otsuki H, Sakurai T, Saito K, Hirai MY, "Widely Targeted Metabolomics Basedon Large-Scale MS/MS Data for Elucidating Metabolite Accumulation Patterns in Plants" Plant and Cell Physiology 50 3747 (2009)

Sawada Y, Toyooka K, Kuwahara A, Sakata A, Nagano M,
Saito K, Hirai MY, "Arabidopsis Bile Acid:Sodium Symporter
Family Protein 5 Is Involved in Methionine-derived Glucosinolate Biosynthesis" Plant Cell Physiology 50 1579-1586 (2009)

638

637

Toyooka K, Goto Y, Asatsuma S, Koizumi M, Mitsui T, Matsuoka K, "A mobile secretory vesicle cluster involved in masstransport from the Golgi to the plant cell exterior" The Plant
Cell 21 1212-1229 (2009)

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661

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Yoshimoto K, Jikumaru Y, Kamiya Y, Kusano M, Consonni. C,
Panstruga. R, Ohsumi. Y, Shirasu K, "Autophagy negatively
regulates cell death by controlling NPR1-dependent salicylic
acid signaling during senescence and the innate immune response in Arabidopsis" The Plant Cell 21 2914-2927 (2009)ster G, Inze D, "Increased leaf size: Different means to an end"
Plant Physiology 153 1261-1279 (2010)

663

Gutierrez-Gonzalez JJ, Guttikonda SK, Tran LS, Aldrich DL,
Zhong R, Yu O, Nguyen HT, Sleper DA, "Differential Expressionof Isoflavone Biosynthetic Genes in Soybean During Water
Deficits" Plant and Cell Physiology 51 936-948 (2010)

664

Hadiarto T, Tran LS, "Progress studies of drought-responsive
genes in rice" Plant Cell Reports 30 297-310 (2010)

Zourelidou M, Muller I, Willige B, Nill C, Jikumaru Y, Li H,
Schwechheimer C, "The polarly localized D6 PROTEIN KINASE
is required for efficient auxin transport in Arabidopsis thaliana" Development 136 627-636 (2009)

665

Hanada K, Akiyama K, Sakurai T, Toyoda T, Shinozaki K, Shiu S,"sORF finder: a program package to identify small open reading frames (sORFs) with high coding potential" Bioinformatics
26 399-400 (2010)

Albinsky D, Sawada Y, Kuwahara A, Nagano M, Hirai A, Saito
K, Hirai MY, "Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the sidechain elongation steps of aliphatic glucosinolate biosynthesis"
Amino Acids 39 1067-1075 (2010)

666

Yuan L, Graff L, Loque D, Kojima S, Tsuchiya Y, Takahashi H,
von Wiren N, "AtAMT1;4, a Pollen-Specific High-Affinity Ammonium Transporter of the Plasma Membrane in Arabidopsis"
Plant Cell Physiology 50 13-25 (2009)

Ayele B, Magnus V, Mihaljevic S, Prebeg T, Coz-Rakovac R,
Ozga J, Reinecke D, Mander L, Kamiya Y, Yamaguchi S, Salopek-Sondi B, "Endogenous gibberellin profile during Christmas rose (Helleborus niger L.) flower and fruit development"
Journal of Plant Growth Regulation 29 194-209 (2010)
Baek D, Pathange P, Chung JS, Jiang J, Gao L, Oikawa A, Hirai
MY, Saito K, Pare PW, Shi H, "A stress-inducible sulphotransferase sulphonates salicylic acid and confers pathogen resistance in Arabidopsis" Plant, Cell and Environment 33 13831392 (2010)
Bidadi H, Yamaguchi S, Asahina M, Satoh S, "Effects of shootapplied gibberellin/gibberellin-biosynthesis inhibitors on root
growth and expression of gibberellin biosynthesis genes in
Arabidopsis thaliana" Plant Root 4 4-11 (2010)
Chikayama E, Kurotani A, Tanaka T, Yabuki T, Miyazaki S, Yokoyama S, Kuroda Y, "Mathematical Model for Empirically Optimizing Large Scale Production of Soluble Protein Domains"
BMC Bioinformatics 11 1-9 (2010)

667

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Chikayama E, Sekiyama Y, Okamoto M, Nakanishi Y, Tsuboi Y,
Akiyama K, Saito K, Shinozaki K, Kikuchi J, "Statistical indicesfor simultaneous large-scale metabolite detections for a single
NMR spectrum" Analytical Chemistry 82 1653-1658 (2010)
Choi J, Huh S, Kojima M, Sakakibara H, Paek K, Hwang I, "Thecytokinin-activated transcription factor ARR2 promotes plant
immunity via TGA3/NPR1-dependent salicylic acid signaling in
Arabidopsis" Developmental Cell 19 284-295 (2010)

672

Date Y, Nakanishi Y, Fukuda S, Kato T, Tsuneda S, Ohno H,
Kikuchi J, "New monitoring approach for metabolic dynamics
in microbial ecosystems using stable-isotope-labeling technologies" Journal of Bioscience and Bioengineering 110 87-93(2010)

673

Fukazawa J, Nakata M, Ito T, Yamaguchi S, Takahashi Y, "Thetranscription factor RSG regulates negative feedback of NtGA20ox1 encoding GA 20-oxidase" The Plant Journal 62 10351045 (2010)
Gonzalez N, De Bodt S, Sulpice R, Jikumaru Y, Chae E, Dhondt
S, Van Daele T, De Milde L, Weigel D, Kamiya Y, Stitt M, Beem-

674

675

Hasegawa Y, Arita M, "Bistable Stochastic Processes in the q-Exponential Family" Physica A 389 4450-4461 (2010)
Hirai MY, Sawada Y, Kanaya S, Kuromori T, Kobayashi M,
Klausnitzer R, Hanada K, Akiyama K, Sakurai T, Saito K, Shinozaki K, "Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scalebioresources" Journal of Plant Research 123 291-298 (2010)
Hirai T, Sato M, Toyooka K, Sun H, Yano m, Ezura H, "Miraculin, a taste-modifying protein is secreted into intercellularspaces in plant cells" Journal of Plant Physiology 167 209-215(2010)
Hirayama T, Shinozaki K, "Research on plant abiotic stressresponses in the post-genome era: past, present and future"
The Plant Journal 61 1041-1052 (2010)
Horai H, Arita M, Kanaya S, Nihei Y, Ikeda T, Suwa K, Ojima Y,
Tanaka K, Tanaka S, Aoshima K, Oda Y, Kakazu Y, Kusano M,
Tohge T, Matsuda F, Sawada Y, Hirai MY, Nakanishi H, Ikeda K,
Akimoto N, Maoka T, Takahashi H, Ara T, Sakurai N, Suzuki H,
Shibata D, Neumann S, Iida T, Tanaka K, Funatsu K, Matsuura
F, Soga T, Taguchi R, Saito K, Nishioka T, "MassBank: a public
repository for sharing mass spectral data for life sciences"
Journal of Mass Spectrometry 45 703-714 (2010)
Hu Z, Yan H, Yang J, Yamaguchi S, Maekawa M, Takamure I,
Tsutsumi N, Kyozuka J, Nakazono M, "Strigolactones negatively regulate mesocotyl elongation in rice during germination and growth in darkness" Plant Cell Physiology 51 11361142 (2010)
Ishida T, Adachi S, Yoshimura M, Shimizu K, Umeda M, Sugimoto K, "Auxin modulates the transition from the mitotic
cycle to the endocycle in Arabidopsis" Development 137 6371 (2010)
Ishii T, Soeno K, Asami T, Fujioka S, Shimada Y, "Arabidopsis
seedlings Over-Accumulated Indole-3-acetic acid in response
to Aminooxyacetic acid" Bioscience Biotechnology and Biochemistry 74 2345-2347 (2010)
Ito S, Kitahata N, Umehara M, Hanada A, Kato A, Ueno K,
Mashiguchi K, Kyozuka J, Yoneyama K, Yamaguchi S, Asami
T, "A new lead chemical for strigolactone biosynthesis inhibitors" Plant and Cell Physiology 51 1143-1150 (2010)
Ito T, Nakata M, Fukazawa J, Ishida S, Takahashi Y, "Alterationof Substrate Specificity: The Variable N-Terminal Domain of
Tobacco Ca2+-Dependent Protein Kinase Is Important for Sub-strate Recognition" The Plant Cell 22 1592-1604 (2010)

3280-3294 (2010)

676

Jiang C, Shimono M, Sugano S, Kojima M, Yazawa K, Yoshida
R, Inoue H, Hayashi N, Sakakibara H, Takatsuji H, "Abscisic acidinteracts antagonistically with salicylic acid signaling pathway
in rice-magnaporthe grisea interaction" Molecular PlantMicrobe Interactions 23 791-798 (2010)

689

Kusano M, Fukushima A, Redestig H, Kobayashi M, Otsuki H,
Onouchi H, Naito S, Hirai MY, Saito K, "Comparative metabolomics charts the impact of genotype-dependent methionine
accumulation in Arabidopsis thaliana" Amino Acids 39 10131021 (2010)

677

Kadota Y, Shirasu K, Guerois R, "NLR sensors meet at the
SGT1-HSP90 crossroad" Trends in Biochemical Sciences 35 199207 (2010)

690

678

Kanno Y, Jikumaru Y, Hanada A, Nambara E, Abrams S, Kamiya Y, Seo M, "Comprehensive hormone profiling in developing arabidopsis seeds: examination of the site of ABA biosynthesis, ABA transport and hormone interactions" Plant andCell Physiology 51 1988-2001 (2010)

Kwon S, Joo Cho H, Hee Jung J, Yoshimoto K, Shirasu K, Prk O,"The Rab GTPase RabG3b functions in autophagy and contributes to tracheary element differentiation in Arabidopsis" The
Plant Journal 64 151-164 (2010)

691

Le DT, Choi JD, Tran LS, "Amino acids conferring herbicide
resistance in tobacco acetohydroxyacid synthase" GM Crops 1
62-67 (2010)

692

Le DT, Netsu O, Uehara-Ichiki T, Shimizu T, Choi I, Omura T, Sasaya T, "Molecular detection of nine rice viruses by a reversetranscription loop-mediated isothermal amplification assay"
Journal of Virological Methods 170 90-93 (2010)

693

Lee G, Jeon E, Kim W, Le DT, Yoo J, Chong C, "Evaluation of a
rapid diagnostic test, NanoSign® Influenza A/B Antigen, fordetection of the 2009 pandemic influenza A/H1N1 viruses"
Virology Journal 7 244 (2010)

694

Lohmann D, Stacey N, Breuninger H, Jikumaru Y, Muller D,
Sicard A, Leyser O, Yamaguchi S, Lenhard M, "SLOW MOTION
is required for within-plant auxin homeostasis and normal
timing of lateral organ initiation at the shoot meristem in
Arabidopsis" The Plant Cell 22 335-348 (2010)

695

Mano Y, Nemoto K, Suzuki M, Seki H, Fujii I, Muranaka T, "TheAMI1 gene family: Indole-3-acetamide hydrolase functions in
auxin biosynthesis in plants" Journal of Experimental Botany
61 25-32 (2010)

696

Maruyama A, Hirai MY, Funada S, Fueki S, "Exogenous application of 5-aminolevulinic acid increases the transcript levelsof sulfur transport and assimilatory genes, sulfate uptake, andcysteine and glutathione contents in Arabidopsis thaliana"
Soil Science and Plant Nutrition 56 281-288 (2010)

697

Masumoto C, Miyazawa S, Ohkawa H, Fukuda T, Taniguchi
Y, Murayama S, Kusano M, Saito K, Fukayama H, Miyao M,"Phosphoenolpyruvate carboxylase intrinsically located in thechloroplast of rice plays a crucial role in ammonium assimilation" Proceedings of the National Academy of Sciences of theUnited States of America 107 5226-5231 (2010)

698

Matsui A, Ishida J, Morosawa T, Okamoto M, Kim J, Kurihara Y,
Kawashima M, Tanaka M, To T, Nakaminami K, Kaminuma E,
Endo T, Mochizuki Y, Kawaguchi S, Kobayashi N, Shinozaki K,
Toyoda T, Seki M, "Arabidopsis tiling array analysis to identify
the stress-responsive genes" Methods in Molecular Biology
639 141-155 (2010)

699

Matsukura S, Mizoi J, Yoshida T, Todaka D, Ito Y, Maruyama
K, Shinozaki K, Shinozaki K, "Comprehensive analysis of rice
DREB2-type genes that encode transcription factors involvedin the expression of abiotic stress-responsive genes" Molecular
Genetics and Genomics 283 185-196 (2010)

700

Minakuchi K, Kameoka H, Yasuno N, Umehara M, Le L, Kobayashi K, Hanada A, Ueno K, Asami T, Yamaguchi S, Kyozuka
J, "FINE CULM1 (FC1) works downstream of strigolactones to679

Kasajima I, Ide Y, Hirai MY, Fujiwara T, "WRKY6 is involved in
the response to boron deficiency in Arabidopsis thaliana"
Physiologia Plantarum 139 80-92 (2010)

680

Kim J, To T, Nishioka T, Seki M, "Chromatin regulation functions in plant abiotic stress responses" Plant, Cell and Environment 33 604-611 (2010)

681

Kitamura S, Matsuda F, Tohge T, Sakakibara K, Yamazaki M,
Saito K, Narumi I, "Metabolic profiling and cytological analysis
of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants" The Plant Journal 62
549-59 (2010)

682

683

Kondou Y, Higuchi M, Matsui M, "High-throughput characterization of plant gene functions by using gain-of-function
technology" Annual review of plant biology 61 373-393 (2010)
Kozuka T, Kobayashi J, Horiguchi G, Demura T, Sakakibara
H, Tsukaya H, Nagatani A, "Involvement of auxin and brassinosteroid in the regulation of petiole elongation under the
shade" Plant Physiology 153 1608-1618 (2010)

684

Kudo T, Kiba T, Sakakibara H, "Metabolism and long-distancetranslocation of cytokinins" Journal of Integrative Plant Biology (Acta Botanica Sinica) 52 53-60 (2010)

685

Kuromori T, Miyaji T, Yabuuchi H, Shimizu H, Sugimoto E, Kamiya A, Moriyama Y, Shinozaki K, "ABC transporter AtABCG25
is involved in abscisic acid transport and responses" Proceedings of the National Academy of Sciences of the United Statesof America 107 2361-2366 (2010)

686

Kuromori T, Shinozaki K, "ABA transport factors found in Arabidopsis ABC transporters" Plant Signaling & Behavior 5 11241126 (2010)

687

Kurotani A, Takagi T, Toyama M, Shirouzu M, Yokoyama S, Fukami y, Tokmakov A, "Comprehensive bioinformatics analysis
of cell-free protein synthesis: identification of multiple protein properties that correlate with successful expression" The
FASEB Journal 24 1095-1104 (2010)

688

Kusano H, She K, Koizumi K, Yamakawa H, Hakata M, Imamura T, Fukuda M, Naito N, Tsurumaki Y, Yaeshima M, Tsuge T,
Matsumoto K, kudoh M, Itoh E, Kikuchi S, Kishimoto N, Yazaki
J, Ando T, Yano M, Aoyama T, Sasaki T, Satoh H, Shimada H,"A Novel Factor FLOURY ENDOSPERM2 Is Involved in Regulation of Rice Grain Size and Starch Quality" The Plant Cell 22

PSC Publications 2000 – 2012

inhibit the outgrowth of axillary buds in rice" Plant and Cell
Physiology 51 1127-1135 (2010)

701

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Mitsuda N, Ikeda M, Takada S, Takiguchi Y, Kondou Y, Yoshizumi T, Fujita M, Shinozaki K, Matsui M, Takagi-Ohme M,"Efficient yeast one-/two-hybrid screening using a librarycomposed only of transcription factors in Arabidopsis thaliana" Plant and Cell Physiology 51 2145-2151 (2010)
Mizoguchi M, Umezawa T, Nakashima K, Kidokoro S, Takasaki
H, Fujita Y, Shinozaki K, Shinozaki K, "Two closely related subclass II SnRK2 protein kinases cooperatively regulate droughtinducible gene expression" Plant and Cell Physiology 51 842847 (2010)
Mochida K, Yoshida T, Sakurai T, Shinozaki K, Shinozaki K,
Tran LS, "LegumeTFDB: an integrative database of Glycinemax, Lotus japonicus and Medicago truncatula transcription
factors" Bioinformatics 26 290-291 (2010)
Mosher S, Moeder W, Nishimura N, Jikumaru Y, Joo S, Urquhart W, Klessig D, Kim S, Nambara E, Yoshioka K, "The lesionmimic mutant cpr22 shows alterations in abscisic acid signaling and abscisic acid insensitivity in a salicylic acid-dependent
manner" Plant Physiology 152 1901-1913 (2010)
Myouga F, Akiyama K, Motohashi R, Kuromori T, Ito T, Iizumi
H, Ryusui R, Sakurai T, Shinozaki K, "The Chloroplast Function
Database: a large-scale collection of Arabidopsis Ds/Spm- or
T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis" The
Plant Journal 61 529-542 (2010)
Nakabayashi R, Yamazaki M, Saito K, "A polyhedral approachfor understanding flavonoid biosynthesis in Arabidopsis" New
Biotechnology 27 829-836 (2010)
Nakagami H, Sugiyama N, Mochida K, Daudi A, Yoshida Y,
Toyoda T, Tomita M, Ishihama Y, Shirasu K, "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants" Plant Physiology 153 1161-1174 (2010)
Nakanishi H, Shoji R, Itouga M, Sakakibara H, "Applicationand comparison of two biotic ligand models predicting copper
toxicity and accumulation in heavy metal tolerant moss" Journal of Water and Environment Technology 8 339-345 (2010)
Nambara E, Okamoto M, Tatematsu K, Yano R, Seo M, Kamiya
Y, "Abscisic acid and the control of seed dormancy and germination" Seed Science Research 20 55-67 (2010)
Neelakandan AK, Nguyen HT, Kumar R, Tran LS, Guttikonda
SK, Quach TN, Aldrich DL, Nes WD, Nguyen HT, "Molecularcharacterization and functional analysis of Glycine max sterol
methyl transferase 2 genes involved in plant membrane sterol
biosynthesis" Plant Molecular Biology 74 503-518 (2010)

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Ohkama-Ohtsu N, Sekimoto Y, Oikawa A, Jikumaru Y, Shinoda
S, Inoue E, Kamide Y, Yokoyama T, Hirai MY, Shirasu K, Kamiya
Y, Oliver D, Saito K, "12-Oxo-Phytodienoic Acid-Glutathione
Conjugate is Transported into the Vacuole in Arabidopsis"
Plant and Cell Physiology 52 205-209 (2010)
Okamoto M, Tatematsu K, Matsui A, Morosawa T, Ishida J,
Tanaka M, Endo T, Mochizuki Y, Toyoda T, Kamiya Y, Shinozaki
K, Nambara E, Seki M, "Genome-wide analysis of endogenous
abscisic acid-mediated transcription in dry and imbibed seedsof Arabidopsis using tiling arrays" The Plant Journal 62 39-51(2010)O'Neill D, Davidson S, Clarke V, Yamauchi Y, Yamaguchi S, Kamiya Y, Reid J, Ross J, "Regulation of the gibberellin pathway
by auxin and DELLA proteins" Planta 232 1141-1149 (2010)
Osakabe Y, Mizuno S, Tanaka H, Maruyama K, Osakabe K,
Todaka D, Fujita Y, Kobayashi M, Shinozaki K, Shinozaki K,"Overproduction of the membrane-bound receptor-like protein kinase 1, RPK1, enhances abiotic stress tolerance in Arabidopsis" The Journal of Biological Chemistry 285 9190-9201(2010)

718

Redestig H, Kusano M, Fukushima A, Matsuda F, Saito K, Arita
M, "Consolidating metabolite identifiers to enable contextual
and multi-platform metabolomics data analysis" BMC Bioinformatics 11 214 (2010)

719

Rong J, Janson S, Ono M, Umehara M, Vrieling K, "Historical and contemporary gene dispersal in wild carrot (Daucus
carota ssp. carota) populations" Annals of Botany 106 285296 (2010)

720

Saito K, Matsuda F, "Metabolomics for functional genomics,
systems biology, and biotechnology" Annual Review of Plant
Biology 61 463-489 (2010)

721

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723

Nishiyama R, Ishii K, Kifune E, Kazama Y, Nishihara K, Matsunaga S, Shinozaki K, Kawano S, "Sex chromosome evolution
revealed by physical mapping of SlAP3X/Y in the dioecious
plant Silene latifolia" Cytologia 75 319-325 (2010)
Nishiyama Y, Yun C, Matsuda F, Saito K, Tozawa Y, "Expressionof bacterial tyrosine ammonia-lyase creates a novel p-coumaric acid pathway in the biosynthesis of phenylpropanoids
in Arabidopsis" Planta 232 209-218 (2010)

Ogata Y, Sakurai N, Suzuki H, Aoki K, Saito K, Shibata D, "Theprediction of local modular structures in a co-expression network based on gene expression datasets" Genome Informatics 23 117-127 (2010)

724

Sasaki T, Mori I, Furuichi T, Munemasa S, Toyooka K, Matsuoka
K, Murata Y, Yamamoto Y, "Closing plant stomata requires ahomolog of an aluminum-activated malate transporter" Plant
and Cell Physiology 51 354-365 (2010)
Sato A, Toyooka K, Okamoto T, "Asymmetric cell division ofrice zygotes located in embryo sac and produced by in vitro
fertilization" Sexual Plant Reproduction 23 211-217 (2010)
Schmutz J, Cannon S, Schlueter J, Ma J, Mitros T, Nelson W,
Hyten D, Song Q, Thelen J, Cheng J, Xu D, Hellsten U, May
G, Yu Y, Sakurai T, Umezawa T, Bhattacharyya M, Sandhu D,
Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein
D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L,
Gill N, Joshi T, Libault M, Sethuraman A, Zhang X, Shinozaki K,
Nguyen H, Wing R, Cregan P, Specht J, Grimwood J, Rokhsar D,
Stacey G, Shoemaker R, Jackson S, "Genome sequence of thepalaeopolyploid soybean" Nature 463 178-183 (2010)
Sekiyama Y, Chikayama E, Kikuchi J, "Profiling polar and semipolar plant metabolites throughout extraction processes using
a combined solution-state and High-Resolution Magic Angle
Spinning NMR approach" Analytical Chemistry 82 1643-1652(2010)

725

Shinozaki K, "The ICAR201 for development of Arabidopsis
research beyond 2010" Journal of Plant Research 123 265-266(2010)

726

Singh D, Filardo F, Storey R, Jermakow A, Yamaguchi S, Swain S,"Overexpression of a gibberellin inactivation gene alters seeddevelopment, KNOX gene expression, and plant development
in Arabidopsis" Physiologia Plantarum 138 74-90 (2010)

727

728

729

730

731

732

Son O, Hur Y, Kim Y, Lee H, Kim S, Kim M, Nam K, Lee M, Kim
B, Park J, Park J, Lee S, Hanada A, Yamaguchi S, Lee I, Kim S,
Yun D, Soderman E, Cheon C, "ATHB12, an ABA-inducible
homeodomain-leucine zipper (HD-Zip) protein of Arabidopsis,
negatively regulates the growth of the inflorescence stem bydecreasing the expression of a Gibberellin 20-oxidase gene"
Plant Cell Physiology 51 1537-1547 (2010)
Suetsugu S, Toyooka K, Senju Y, "Subcellular membrane curvature mediated by the BAR domain superfamily proteins"
Seminars in Cell & Developmental Biology 21 340-349 (2010)
Suzuki M, Kusano M, Takahashi H, Tsuchiya Y, Hayashi N, Kobayashi M, Ichikawa T, Matsui M, Hirochika H, Saito K, "RiceArabidopsis FOX line screening with FT-NIR-based fingerprinting for GC-TOF/MS-based metabolite profiling" Metabolomics
6 137-145 (2010)
Taji T, Komatsu K, Katori T, Kawasaki Y, Sakata Y, Tanaka S, Kobayashi M, Toyoda A, Seki M, Shinozaki K, "Comparative genomic analysis of 1047 completely sequenced cDNAs from an
Arabidopsis-related model halophyte, Thellungiella halophila" BMC Plant Biology 10 261 (2010)
Takahashi N, Quimbaya M, Schubert V, Lammens T, Vandepoele K, Schubert I, Matsui M, Inze D, Berx G, De Veylder L,"The MCM-binding protein ETG1 aids sister chromatid cohesion required for postreplicative homologous recombination
repair" PLoS Genetics 6 e1000817 (2010)
Takasaki H, Maruyama K, Kidokoro S, Ito Y, Fujita Y, Shinozaki
K, Shinozaki K, Nakashima K, "The abiotic stress-responsive
NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice" Molecular Genetics andGenomics 284 173-183 (2010)

733

Takemoto K, Arita M, "Nested structure acquired throughsimple evolutionary process" Journal of Theoretical Biology
264 782-786 (2010)

734

Tameling W, Nooijen C, Ludwig N, Boter M, Slootweg E, Goverse A, Shirasu K, Joosten M, "RanGAP2 Mediates Nucleocytoplasmic Partitioning of the NB-LRR Immune Receptor Rx in the
Solanaceae, Thereby Dictating Rx Function" The Plant Cell 224176-4194 (2010)

735

Tanaka R, Rothbart M, Oka S, Takabayashi A, Takahashi K, Shibata M, Myouga F, Motohashi R, Shinozaki K, Grimm B, Tanaka A, "LIL3, a light-harvesting-like protein, plays an essential
role in chlorophyll and tocopherol biosynthesis" Proceedingsof the National Academy of Sciences of the United States ofAmerica 107 16721-16725 (2010)

736

Tran LS, Mochida K, "A platform for functional prediction andcomparative analyses of transcription factors of legumes andbeyond" Plant Signaling & Behavior 5 550-552 (2010)

737

Tran LS, Mochida K, "Functional genomics of soybean for im-

provement of productivity in adverse conditions" Functional& Integrative Genomics 10 447-462 (2010)

738

Tran LS, Mochida K, "Identification and prediction of abiotic
stress responsive transcription factors involved in abiotic stresssignaling in soybean" Plant Signaling & Behavior 5 1-3 (2010)

739

Tran LS, Nishiyama R, Shinozaki-Yamaguchi K, Shinozaki K,"Potential utilization of NAC transcription factors to enhance
abiotic stress tolerance in plants by biotechnological approach" GM Crops 1 1-8 (2010)

740

Tran LS, Shinozaki K, Yamaguchi-Shinozaki K, "Role of cytokinin responsive two-component system in ABA and osmotic
stress signalings" Plant Signaling & Behavior 5 1-3 (2010)

741

Trujillo M, Shirasu K, "Ubiquitination in plant immunity" Current Opinion in Plant Biology 13 402-408 (2010)

742

Tsuchiya Y, Vidaurre D, Toh S, Hanada A, Nambara E, Kamiya Y,
Yamaguchi S, McCourt P, "A small-molecule screen identifies
new functions for the plant hormone strigolactone" Nature
Chemical Biology 6 741-749 (2010)

743

Uchida H, Ohyama K, Suzuki M, Yamashita H, Muranaka T,
Ohyama K, "Triterpenoid levels are reduced during Euphorbia
tirucalli L. callus formation" Plant Biotechnology 27 105-109(2010)

744

Ueno K, Hanada A, Yamaguchi S, Asami T, "Preparation ofmultideuterated 5-deoxystrigol for use as an internal standard
for quantitative LC/MS" Journal of Labelled Compounds andRadiopharmaceuticals 53 763-766 (2010)

745

Ukaji N, Kuwabara C, Takezawa D, Seo M, Kanno Y, Arakawa K,
Fujiwara S, "Endoplasmic reticulum-localized small heat shockprotein that accumulates in mulberry tree (Morus bombycis
Koidz.) during seasonal cold acclimation is responsive to abscisic acid" Tree Physiology 30 502-513 (2010)

746

Umehara M, Hanada A, Magome H, Takeda N, Yamaguchi S,"Contribution of strigolactones to the inhibition of tiller bud
outgrowth under phosphate deficiency in rice" Plant and Cell
Physiology 51 1118-1126 (2010)

747

Umezawa T, Nakashima K, Miyakawa T, Kuromori T, Tanokura
M, Shinozaki K, Shinozaki K, "Molecular basis of the coreregulatory network in ABA responses: sensing, signaling andtransport" Plant and Cell Physiology 51 1821-1839 (2010)

748

Urano K, Kurihara Y, Seki M, Shinozaki K, "'Omics' analyses ofregulatory networks in plant abiotic stress responses" Current
Opinion in Plant Biology 13 132-138 (2010)

749

Watanabe M, Hubberten H, Saito K, Hoefgen R, "Generalregulatory patterns of plant mineral nutrient depletion as
revealed by serat quadruple mutants disturbed in cysteinesynthesis" Molecular Plant 3 438-66 (2010)

750

Yamada K, Osakabe Y, Mizoi J, Nakashima K, Fujita Y, Shinozaki K, Shinozaki K, "Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter
for monosaccharides" The Journal of Biological Chemistry 285
1138-1146 (2010)

751

Yamanaka T, Nakagawa Y, Mori K, Nakano M, Imamura T,
Kataoka H, Terashima A, Iida K, Kojima I, Katagiri T, Shinozaki

PSC Publications 2000 – 2012

K, Iida H, "MCA1 and MCA2 that mediate Ca2+ uptake havedistinct and overlapping roles in Arabidopsis" Plant Physiology 152 1284-1296 (2010)752

Yamazaki M, Asano T, Yamazaki Y, Sirikantaramas S, Sudo H,
Saito K, "Biosynthetic system of camptothecin: An anticancer
plant product" Pure and Applied Chemistry 82 213-218 (2010)753

Yoshida S, Ishida J, Kamal N, Ali A, Namba S, Shirasu K, "A
full-length enriched cDNA library and expressed sequence tag
analysis of the parasitic weed, Striga hermonthica" BMC Plant
Biology 10 1-10 (2010)754

Yoshida S, Maruyama S, Nozaki H, Shirasu K, "Horizontal Gene
Transfer by the Parasitic Plant Striga hermonthica" Science
328 1128 (2010)755

Yoshida T, Fujita Y, Sayama H, Kidokoro S, Maruyama K, Mizoi
J, Shinozaki K, Shinozaki K, "AREB1, AREB2, and ABF3 aremaster transcription factors that cooperatively regulate ABREdependent ABA signaling involved in drought stress tolerance
and require ABA for full activation" The Plant Journal 61 672685 (2010)756

Yoshimoto K, "Physiological roles of autophagy in plants:
Does plant autophagy have a pro-death function?" Plant Signaling & Behavior 5 1128 (2010)757

Yoshimoto K, "Plant autophagy puts the brakes on cell deathby controlling salicylic acid signaling" Autophagy 6 192-193(2010)

758

Yoshimoto K, Takano Y, Sakai Y, "Autophagy in plants andphytopathogens" FEBS Letters 584 1350-1358 (2010)

759

760

761

762

763

764

765

Membrane Aquaporin AqpZ Protein Is Essential for Glucose
Metabolism during Photomixotrophic Growth of Synechocystis sp. PCC 6803" The Journal of Biological Chemistry 286
25224-25235 (2011)

777

Diaz C, Kusano M, Sulpice R, Araki M, Redestig H, Saito K, Stitt
M, Shin R, "Determining novel functions of Arabidopsis 14-3-3
proteins in central metabolic processes" BMC Systems Biology
5 1-12 (2011)

Ando S, Sato Y, Shigemori H, Shimizu T, Okada K, Yamane
H, Jikumaru Y, Kamiya Y, Yamada K, Akimoto-Tomiyama C,
Tanabe S, Nishizawa Y, Minami E, "Identification and characterization of 2'-deoxyuridine from the supernatant of conidial
suspensions of rice blast fungus as an infection-promoting
factor in rice plants" Molecular Plant-Microbe Interactions 24519-532 (2011)

778

Dubouzet J, Maeda S, Sugano S, Ohtake M, Hayashi N, Ichikawa T, Kondou Y, Kuroda H, Horii Y, Matsui M, Oda K, Hirochika H, Takatsuji H, Mori M, "Screening for resistance against
Pseudomonas syringae in rice-FOX Arabidopsis lines identified
a putative receptor-like cytoplasmic kinase gene that confers
resistance to major bacterial and fungal pathogens in Arabidopsis and rice" Plant Biotechnology Journal 9 466-485 (2011)

Asahina M, Azuma K, PITAKSARINGKARN W, Yamazaki T,
Mitsuda N, Ohme-Takagi M, Yamaguchi S, Kamiya Y, Nambara E, Okada K, Nishimura T, Koshiba T, Yokota T, Kamada
H, Satoh S, "Spatially selective hormonal control of RAP2.6L
and ANAC071 transcription factors involved in tissue reunionin Arabidopsis" Proceedings of the National Academy of Sciences of the United States of America 108 16128-16132 (2011)

779

Fernie A, Aharoni A, Willmitzer L, Stitt M, Tohge T, Kopka J,
Carroll A, Saito K, Fraser P, DeLuca V, "Recommendations forreporting metabolite data" The Plant Cell 23 2477-82 (2011)

780

Aya K, Hiwatashi Y, Kojima M, Sakakibara H, Ueguchi-Tanaka
M, Hasebe M, Matsuoka M, "The gibberellin perception
system evolved to regulate a pre-existing GAMYB-mediatedsystem during land plant evolution" Nature Communications
2 1-9 (2011)

781

769

Azuma M, Osanai T, Tanaka K, Saito K, Hirai MY, Ikeuchi M,"A response regulator Rre37 and an RNA polymerase sigma
factor SigE represent two parallel pathways to activate sugar
catabolism in a cyanobacterium Synechocystis sp. PCC 6803"
Plant Cell Physiology 52 404-412 (2011)

782

Fukui K, Ito S, Ueno K, Yamaguchi S, Kyozuka J, Asami T, "Newbranching inhibitors and their potential as strigolactone mimics in rice" Bioorganic & Medicinal Chemistry Letters 21 49054908 (2011)

770

783

Betsuyaku S, Takahashi F, Kinoshita A, Miwa H, Shinozaki K,
Fukuda H, Sawa S, "Mitogen-activated protein kinase regulated by the CLAVATA receptors contributes to shoot apicalmeristem homeostasis" Plant and Cell Physiology 52 14-29(2011)

Fukushima A, Kusano M, Redestig H, Arita M, Saito K, "Metabolomic correlation-network modules in Arabidopsis basedon a graph-clustering approach" BMC Systems Biology 5 1(2011)

784

Fukushima E, Seki H, Ohyama K, Ono E, Umemoto N, Mizutani
M, Saito K, Muranaka T, "CYP716A subfamily members are
multifunctional oxidases in triterpenoid biosynthesis" Plant
and Cell Physiology 52 2051-2061 (2011)

785

Furukawa J, Abe Y, Mizuno H, Matsuki K, Sagawa K, Kojima
M, Sakakibara H, Iwai H, Satoh S, "Seasonal fluctuation oforganic and inorganic components in xylem sap of populus
nigra" Plant Root 5 56-62 (2011)

786

Gallego-Giraldo L, Jikumaru Y, Kamiya Y, Tang Y, Dixon R,"Selective lignin downregulation leads to constitutive defense
response expression in alfalfa (Medicago sativa L.)" New Phytologist 190 627-639 (2011)

787

Hamasaki H, Yoshizumi T, Takahashi N, Higuchi M, Kuromori T,
Imura Y, Shimada H, Matsui M, "SD3, an Arabidopsis thaliana
Homolog of TIM21, Affects Intracellular ATP Levels and Seedling Development" Molecular Plant 5 461-471 (2011)

788

Hanada K, Hase T, Toyoda T, Shinozaki K, Okamoto M, "Origin
and evolution of genes related to ABA metabolism and its
signaling pathways" Journal of Plant Research 124 455-465(2011)

789

Hanada K, Sawada Y, Kuromori T, Saito K, Toyoda T, Shinozaki
K, "Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana" Molecular Biology and Evolution 28 377-382 (2011)

766

767

768

Yoshimoto K, van Doorn W, "Role of chloroplasts and otherplastids in ageing and death of plants and animals: a tale ofVishnu and Shiva" Aging Research Reviews 9 117-130 (2010)
Yuguchi M, Yokouchi T, Tominaga R, Kuromori T, Shinozaki K,
Okada K, Wada T, "Phenome analysis of root development inArabidopsis" Plant Biotechnology 27 345-347 (2010)
Zhang M, Kadota Y, Prodromou C, Shirasu K, Pearl L, "Structural Basis for Assembly of Hsp90-Sgt1-CHORD Protein Complexes: Implications for Chaperoning of NLR Innate Immunity
Receptors" Molecular Cell 39 269-281 (2010)
Ziaratnia S, Ohyama K, Hussein A, Muranaka T, Lall N, Kunert K,
Meyer J, "Isolation and identification of a novel chlorophenol
from a cell suspension culture of Helichrysum aureonitens"
Chemical and Pharmaceutical Bulletin 57 1282-1283 (2010)"Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis
to UV-B light" The Plant Journal 67 354-369 (2011)
Adachi S, Minamisawa K, Okushima Y, Inagaki S, YOSHIYAMA
K, Kondou Y, Kaminuma E, Kawashima M, Toyoda T, Matsui M,
Kurihara D, Matsunaga S, Umeda M, "Programmed inductionof endoreduplication by DNA double-strand breaks in Arabidopsis" Proceedings of the National Academy of Sciences of
the United States of America 108 1-6 (2011)
Akai M, Onai K, Kusano M, Sato M, Redestig H, Toyooka K,
Morishita M, Miyake H, Hazama A, Checchetto V, Szabo I,
Matsuoka K, Saito K, Yasui M, Ishiura M, Uozumi N, "Plasma

771

772

773

774

Bishopp A, Lehesranta S, Vaten A, Help H, El-showk S, Scheres
B, Helariutta K, Mahonen P, Sakakibara H, Helariutta Y, "Phloem-transported cytokinin regulates polar auxin transport andmaintains vascular pattern in the root meristem" Current Biology 21 927-932 (2011)
Blair M, Fernandez A, Ishitani M, Moreta D, Seki M, Ayling S,
Shinozaki K, "Construction and EST sequencing of full-length,
drought stress cDNA libraries for common beans (Phaseolus
vulgaris L.)" BMC Plant Biology 11 171 (2011)
Bunsupa S, Okada T, Saito K, Yamazaki M, "An acyltransferaselike gene obtained by differential gene expression profiles ofquinolizidine alkaloid-producing and nonproducing cultivarsof Lupinus angustifolius" Plant Biotechnology 28 89-94 (2011)
Choudhary S, Tran LS, "Phytosterols: Perspectives in Human
Nutrition and Clinical Therapy" Current Medicinal Chemistry
18 4557-4567 (2011)

775

Cramer G, Urano K, Delrot S, Pezzotti M, Shinozaki K, "Effects
of abiotic stress on plants: a systems biology perspective" BMC
Plant Biology 11 163 (2011)

776

Cui H, hao Y, Kovtun M, Stolc V, Deng XY, Sakakibara H, Kojima M, "Genome-wide direct target analysis reveals a role for
SHORT-ROOT in root vascular patterning through cytokinin
homeostasis" Plant Physiology 157 1221-1231 (2011)

790

Higuchi M, Ichikawa T, Kondou Y, Matsui K, Hasegawa Y,
Kawashima M, Sonoike K, Mori M, Hirochika H, Matsui M,"Functional analysis of two isoforms of leaf-type ferredoxinNADP+-oxidoreductase in rice using heterologous expression
system of Arabidopsis thaliana" Plant Physiology 157 96-108(2011)

791

Himuro Y, Tanaka H, Hashiguchi M, Ichikawa T, Nakazawa M,
Seki M, Fujita M, Shinozaki K, Matsui M, Akaishi R, Hoffmann
F, "FOX-superroots of Lotus corniculatus, overexpressing Arabidopsis full-length cDNA, show stable variations in morphological traits" Journal of Plant Physiology 168 181-187 (2011)

792

Fujita Y, Fujita M, Shinozaki K, Shinozaki-Yamaguchi K, "ABAmediated transcriptional regulation in response to osmotic
stress in plants" Journal of Plant Research 124 509-525 (2011)

Honsel A, Kojima M, Haas R, Frank W, Sakakibara H, Herschbach C, Rennenberg H, "Sulphur limitation and early sulphur
deficiency responses in poplar: significance of gene expression, metabolites, and plant hormones" Journal of Experimental Botany 63 1873-1893 (2011)

793

Fukazawa J, Nakata M, Ito T, Matsushita A, Yamaguchi S,
Takahashi Y, "bZIP transcription factor RSG controls the feedback regulation of NtGA20ox1 via intracellular localizationand epigenetic mechanism" Plant Signaling & Behavior 6 2628 (2011)

Ide Y, Kusano M, Oikawa A, Fukushima A, Tomatsu H, Saito
K, Hirai MY, Fujiwara T, "Effects of molybdenum deficiency
and defects in molybdate transporter MOT1 on transcript accumulation and nitrogen/sulphur metabolism in Arabidopsis
thaliana" Journal of Experimental Botany 62 1483-1497 (2011)

794

Inubushi k, Sakakibara H, Kojima M, Hattori H, Okumura Y,
Nimura M, Ohishi K, "Role of underground conditions in theoccurrence of carnation stunting and proliferation syndrome,and relationship between the symptoms and endogenous
phytohormones" Journal of the Japanese Society for Horticultural Science 80 182-189 (2011)

795

Ishida J, Yoshida S, Ito M, Namba S, Shirasu K, "Agrobacterium
rhizogenes-mediated transformation of the parasitic plant
Phtheirospermum japonicum" PLoS One 6 e25802 (2011)

796

Ito S, Umehara M, Hanada A, Kitahata N, Hayase H, Yamaguchi S, Asami T, "Effects of triazole derivatives on strigolactone
levels and growth retardation in rice" PLoS One 6 e21723(2011)

797

Iwamoto M, Kiyota S, Hanada A, Yamaguchi S, Takano M,"The multiple contributions of phytochromes to the control ofinternode elongation in rice" Plant Physiology 157 1187-1195(2011)

798

Iwase A, Mitsuda N, Koyama T, Hiratsu K, Kojima M, Arai T,
Inoue Y, Seki M, Sakakibara H, Sugimoto K, Ohme-Takagi M,"The AP2/ERF transcription factor WIND1 controls cell dedifferentiation in Arabidopsis" Current Biology 21 508-514(2011)

799

Iwase A, Ohme-Takagi M, Sugimoto K, "WIND1: A key molecular switch for plant cell dedifferentiation" Plant Signaling& Behavior 6 1943-1945 (2011)

800

Izawa T, Mihara M, Suzuki Y, Gupta M, Itoh H, Nagano A, Motoyama R, Sawada Y, Yano M, Hirai MY, Makino A, Nagamura
Y, "Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field" The Plant Cell 23 17411755 (2011)

801

Kamiya T, Yamagami M, Hirai MY, Fujiwara T, "Establishmentof an in planta magnesium monitoring system using CAX3
promoter-luciferase in Arabidopsis" Journal of Experimental
Botany 63 355-363 (2011)

PSC Publications 2000 – 2012

802

803

Kawashima C, Matthewman C, Huang S, Lee B, Yoshimoto
N, Koprivova A, Rubio-Somoza I, Todesco M, Rathjen T, Saito
K, Takahashi H, Dalmay T, Kopriva S, "Interplay of SLIM1 andmiR395 in the regulation of sulfate assimilation in Arabidopsis" The Plant Journal 66 863-76 (2011)

804

Kiba T, Kudo T, Kojima M, Sakakibara H, "Hormonal control ofnitrogen acquisition: roles of auxin, abscisic acid, and cytokinin" Journal of Experimental Botany 62 1399-1409 (2011)

805

Kikuchi J, Ogata Y, Shinozaki K, "ECOMICS: Ecosystem TransOMICS Tools and Methods for Complex Environmental Samples and Datasets" Journal of Ecosystem & Ecography S2 001(2011)

806

807

808

809

810

Hayashi T, Iida K, Hanamata S, Iida H, Shinozaki K, Kuchitsu K,"Involvement of the putative Ca2+-permeable mechanosensitive channels, NtMCA1 and NtMCA2, in Ca2+ uptake, Ca2+-dependent cell proliferation and mechanical stress-induced gene
expression in tobacco (Nicotiana tabacum) BY-2 cells" Journalof Plant Research 125 555-568 (2011)

Katsumata T, Fukazawa J, Magome H, Jikumaru Y, Kamiya Y,
Natsume M, Kawaide H, Yamaguchi S, "Involvement of the
CYP78A subfamily of cytochrome P450 monooxygenases inprotonema growth and gametophore formation in the moss
Physcomitrella patens" Bioscience Biotechnology and Biochemistry 75 331-336 (2011)

Kim J, Mizoi J, Yoshida T, Fujita Y, Nakajima J, Ohori T, Todaka D, Nakashima K, Hirayama T, Shinozaki K, ShinozakiYamaguchi K, "An ABRE promoter sequence is involved in osmotic stress-responsive expression of the DREB2A gene, which
encodes a transcription factor regulating drought-inducible
genes in Arabidopsis" Plant and Cell Physiology 52 2136-2146(2011)

815

816

817

818

819

Kimura K, Tran LS, Funane K, "Loss of poly- γ -glutamic Acid
Synthesis of Bacillus subtilis (natto) Due to IS4Bsu1 Translocation to swrA Gene" Food Science and Technology Research 17447-451 (2011)
Kobayashi M, Kouzu N, Inami A, Toyooka K, Konishi Y, Matsuoka K, Matoh T, "Characterization of Arabidopsis CTP:3deoxy-D-manno-2-octulosonate cytidylyltransferase (CMPKDO synthetase), the enzyme that activates KDO duringrhamnogalacturonan II biosynthesis" Plant and Cell Physiology
52 1832-1843 (2011)
Kodaira K, Qin F, Tran LS, Maruyama K, Kidokoro S, Fujita Y,
Shinozaki K, Yamaguchi-Shinozaki K, "Arabidopsis Cys2/His2
Zinc-Finger Proteins AZF1 and AZF2 Negatively Regulate Abscisic Acid-Repressive and Auxin-Inducible Genes under Abiotic
Stress Conditions" Plant Physiology 157 742-756 (2011)
Kodama Y, "A bright green-colored bimolecular fluorescencecomplementation assay in living plant cells" Plant Biotechnology 28 95-98 (2011)

820

821

822

811

Kodama Y, Suetsugu N, Wada M, "Novel protein-protein interaction family proteins involved in chloroplast movement
response" Plant Signaling & Behavior 6 483-490 (2011)812

Kuromori T, Ito T, Sugimoto E, Shinozaki K, "Arabidopsis mutant of AtABCG26, an ABC transporter gene, is defective inpollen maturation" Journal of Plant Physiology 168 2001-2005(2011)

823

Kuromori T, Sugimoto E, Shinozaki K, "Arabidopsis mutants of
AtABCG22, an ABC transporter gene, increase water transpiration and drought susceptibility" The Plant Journal 67 885894 (2011)

824

813

814

Kurusu T, Yamanaka T, Nakano M, Takiguchi A, Ogasawara Y,

Kusano M, Fukushima A, Redestig H, Saito K, "Metabolomic
approaches toward understanding nitrogen metabolism inplants" Journal of Experimental Botany 62 1439-1453 (2011)
Kusano M, Par J, Jonas G, Fukushima A, Michael S, Johan T,
Thomas M, "Metabolite signature during short-day induced
growth cessation in Populus" Frontiers in Plant Physiology 2
1-11 (2011)
Kusano M, Redestig H, Tadayoshi H, Oikawa A, Matsuda F,
Fukushima A, Arita M, Shin W, Megumu Y, Kyoko H, Hiroshi E,
Saito K, "Covering chemical diversity of genetically-modified
tomatoes using metabolomics for objective substantial equivalence assessment" PLoS One 6 e16989 (2011)
Kusano M, Tabuchi M, Fukushima A, Funayama K, Diaz C,
Kobayashi M, Hayashi N, Tsuchiya Y, Takahashi H, Kamata A,
Yamaya T, Saito K, "Metabolomics data reveal a crucial role ofcytosolic glutamine synthetase 1;1 in coordinating metabolicbalance in rice" The Plant Journal 66 456-466 (2011)
Kusano M, Tohge T, Fukushima A, Kobayashi M, Hayashi N,
Otsuki H, Kondou Y, Goto H, Kawashima M, Matsuda F, Niida R,
Matsui M, Saito K, Fernie A, "Metabolomics reveals comprehensive reprogramming involving two independent metabolic
responses of Arabidopsis to UV-B light" The Plant Journal 67
354-369 (2011)
Lackman P, Gonzalez-Guzman M, Tilleman S, Carqueijeiro I,
Cuellar Perez A, Moses T, Seo M, Kanno Y, Hakkinen S, Van
Montagu M, Thevelein J, Maaheimo H, Oksman-Caldentey
K, Rodriguez P, Rischer H, Goossens A, "Jasmonate signaling
involves the abscisic acid receptor PYL4 to regulate metabolic
reprogramming in Arabidopsis and tobacco" Proceedingsof the National Academy of Sciences of the United States ofAmerica 108 5891-5896 (2011)

837

Okamoto M, Kushiro T, Jikumaru Y, Abrams S, Kamiya Y,
Seki M, Nambara E, "ABA 9'-hydroxylation is catalyzed by
CYP707A in Arabidopsis" Phytochemistry 72 717-722 (2011)

838

Okamoto M, Seki M, "Expression profile and 5'-terminal structure of Arabidopsis antisense transcripts expressed in seeds"
Plant Signaling & Behavior 6 691-693 (2011)839

Okazaki Y, Kamide Y, Hirai MY, Saito K, "Plant lipidomics
based on hydrophilic interaction chromatography coupled toion trap time-of-flight mass spectrometry" Metabolomics doi:
10.1007/s11306-011-0318-z (2011)

840

Osanai T, Oikawa A, Azuma M, Tanaka K, Saito K, Hirai MY,
Ikeuchi M, "Genetic engineering of group 2 σ factor SigE
widely activates expressions of sugar catabolic genes in Synechocystis species PCC 6803" The Journal of Biological Chemistry 286 30962-30971 (2011)

841

Ou B, Yin K, Liu S, Yan Y, Gu T, Man Jennifer H, Zhang L,
Miao J, Kondou Y, Matsui M, Gu H, Qu L, "A High-Throughput
Screening System for Arabidopsis Transcription Factors and Its
Application to Med25-Dependent Transcriptional Regulation"
Molecular Plant 4 1-10 (2011)842

Nemoto K, Seto T, Takahashi H, Nozawa A, Seki M, Shinozaki K,
Endo Y, Sawasaki T, "Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system" Phytochemistry 72 1136-1144 (2011)

Pei-Chi L, Pomeanz M, Jikumaru Y, Kang S, Hah C, Fujioka S,
Kamiya Y, Jyan-Chyn J, "The Arabidopsis tandem zinc finger
protein AtTZF1 affects ABA- and GA-mediated growth, stressand gene expression responses" The Plant Journal 65 253-268(2011)

843

Nishimura T, Toyooka K, Sato M, Matsumoto S, Lucas M,
Strnad M, Baluska F, Koshiba T, "Immunohistochemical observation of indole-3-acetic acid at the IAA synthetic maize coleoptile tips" Plant Signaling & Behavior 6 1-10 (2011)

Peng L, Fukao Y, Myouga F, Motohashi R, Shinozaki K, Shikanai T, "A Chaperonin Subunit with Unique Structures Is Essential for Folding of a Specific Substrate" PLoS Biology 9e1001040 (2011)844

Qin F, Kodaira K, Maruyama K, Mizoi J, Tran LS, Fujita Y,
Morimoto K, Shinozaki K, Shinozaki-Yamaguchi K, "SPINDLY, a negative regulator of Gibberellic Acid signaling, is involvedin the plant abiotic stress response" Plant Physiology 157
1900-1913 (2011)845

Qin F, Shinozaki K, Shinozaki-Yamaguchi K, "Achievements
and challenges in understanding plant abiotic stress responses
and tolerance" Plant and Cell Physiology 52 1569-1582 (2011)

846

Redestig H, Kobayashi M, Saito K, Kusano M, "Exploring matrix effects and quantification performance in metabolomics
experiments using artificial biological gradients" Analytical
Chemistry 83 5645-5651 (2011)

847

Redestig H, Kusano M, Ebana K, Kobayashi M, Oikawa A,
Okazaki Y, Matsuda F, Arita M, Fujita N, Saito K, "Exploring
molecular backgrounds of quality traits in rice by predictivemodels based on high-coverage metabolomics" BMC Systems
Biology 5 1-11 (2011)

848

Robert-Seilaniantz A, MacLean D, Jikumaru Y, Hill L, Yamaguchi S, Kamiya Y, Jones J, "The microRNA miR393 re-directs
secondary metabolite biosynthesis away from camalexin andtowards glucosinolates" The Plant Journal 67 218-231 (2011)

849

Saika H, Oikawa A, Matsuda F, Onodera H, Saito K, Toki S,"Application of gene targeting to designed mutation breeding of high-tryptophan rice" Plant Physiology 156 1269-1277(2011)

108 18512-18517 (2011)

825

826

Matsuda F, Nakabayashi R, Sawada Y, Suzuki M, Hirai MY,
Kanaya S, Saito K, "Mass spectra-based framework for automated structural elucidation of metabolome data to explore
phytochemical diversity" Frontiers in Plant Science 2 40 (2011)
Minamisawa N, Sato M, Cho K, Ueno H, Katsuaki T, Kajikawa
M, Yamato K, Ohyama K, Toyooka K, Kim G, Horiguchi G,
Takano H, Ueda T, Tsukaya H, "ANGUSTIFOLIA, a plant homolog of CtBP/BARS, functions outside the nucleus" The Plant
Journal 68 788-799 (2011)

827

Mito T, Seki M, Shinozaki K, Takagi-Ohme M, Matsui K, "Generation of chimeric repressors that confer salt tolerance inArabidopsis and rice" Plant Biotechnology Journal 9 736-746(2011)

828

Monda K, Negi J, Iio A, Kusumi k, Kojima M, Hashimoto M,
Sakakibara H, Iba K, "Environmental regulation of stomatal
response in the Arabidopsis Cvi-0 ecotype" Planta 234 555-563(2011)

829

830

831

832

Nanjo Y, Maruyama K, Yasue H, Shinozaki-Yamaguchi K, Shinozaki K, Komatsu S, "Transcriptional responses to flooding
stress in roots including hypocotyl of soybean seedlings" Plant
Molecular Biology 77 129-144 (2011)

Nishiyama R, Watanabe Y, Fujita Y, Le DT, Kojima M, Werner
T, Vankova R, Yamaguchi-Shinozaki K, Shinozaki K, Kakimoto
T, Sakakibara H, Schmulling T, Tran LS, "Analysis of Cytokinin
Mutants and Regulation of Cytokinin Metabolic Genes Reveals
Important Regulatory Roles of Cytokinins in Drought, Salt andAbscisic Acid Responses, and Abscisic Acid Biosynthesis" The
Plant Cell 23 2169-2183 (2011)

Le DT, Nishiyama R, Watanabe Y, Mochida K, YamaguchiShinozaki K, Shinozaki K, Tran LS, "Genome-Wide Expression
Profiling of Soybean Two-Component System Genes in Soybean Root and Shoot Tissues under Dehydration Stress" DNA
Research 18 17-29 (2011)

833

Le DT, Nishiyama R, Watanabe Y, Mochida K, YamaguchiShinozaki K, Shinozaki K, Tran LS, "Genome-Wide Survey andExpression Analysis of the Plant-Specific NAC Transcription
Factor Family in Soybean During Development and Dehydration Stress" DNA Research 18 263-276 (2011)

Ogawa d, Abe K, Miyao A, Kojima M, Sakakibara H, Mizutani
M, Morita H, Toda Y, Hobo T, Sato Y, Hattori T, Hirochika H,
Takeda S, "RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice" Nature Communications 2 1-11 (2011)

834

Oikawa A, Fujita N, Horie R, Saito K, Tawaraya K, "Solid-phaseextraction for metabolomic analysis of high-salinity samples
by capillary electrophoresis-mass spectrometry" Journal of
Separation Science 34 1063-1068 (2011)

835

Oikawa A, Kamide Y, Hirai MY, Saito K, "Metabolomics of asingle vacuole reveals metabolic dynamism in an alga Chara
australis" Plant Physiology 157 544-551 (2011)

836

Oikawa A, Otsuka T, Jikumaru Y, Yamaguchi S, Matsuda F,
Nakabayashi R, Takashina T, Isuzugawa K, Saito K, Shiratake
K, "Effects of freeze-drying of samples on metabolite levels in
metabolome analyses" Journal of Separation Science 34 35613567 (2011)

Lomin S, Sakakibara K, Romanov G, Sakakibara H, "Ligandbinding properties and subcellular localization of maize cytokinin receptors" Journal of Experimental Botany 62 5149-5159(2011)
Mashiguchi K, Tanaka K, Sakai T, Sugawara S, Kawaide H,
Natsume M, Hanada A, Yaeno T, Shirasu K, Yao H, McSteenP, Zhao Y, Hayashi K, Kamiya Y, Kasahara H, "The main auxin
biosynthesis pathway in Arabidopsis" Proceedings of the National Academy of Sciences of the United States of America

PSC Publications 2000 – 2012

850

851

852

853

854

Sakakibara K, Hanada K, "An evolutionary view of functional
diversity in family 1 glycosyltransferases" The Plant Journal 66
182-193 (2011)
Sakamoto T, Inui YT, Uraguchi S, Yoshizumi T, Matsunaga S,
Matsui M, Umeda M, Fukui K, Fujiwara T, "Condensin II Alleviates DNA Damage and Is Essential for Tolerance of Boron
Overload Stress in Arabidopsis" The Plant Cell 23 3533-3546(2011)
Sakurai N, Ara T, Ogata Y, Sano R, Ohno T, Sugiyama K, Hiruta
A, Yamazaki K, Yano K, Aoki K, Aharoni A, Hamada K, Yokoyama K, Kawamura S, Otsuka H, Tokimatsu T, Kanehisa
M, Suzuki H, Saito K, Shibata D, "KaPPA-View4: A metabolic
pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data" Nucleic Acids Research 39 D677D684 (2011)
Sakurai T, Kondou Y, Akiyama K, Kurotani A, Higuchi M,
Ichikawa T, Kuroda H, Kusano M, Mori M, Saitou T, Sakakibara
H, Sugano S, Suzuki M, Takahashi H, Takahashi S, Takatsuji H,
Yokotani N, Yoshizumi T, Saito K, Shinozaki K, Oda K, Hirochika H, Matsui M, "RiceFox: A Database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains awide range of trait information to facilitate analysis of genefunction" Plant Cell Physiology 52 265-273 (2011)
Sasaki E, Takahashi C, Asami T, Shimada Y, "AtCAST, a Tool for
Exploring Gene Expression Similarities among DNA Microarray
Experiments Using Networks" Plant Cell Physiology 52 169180 (2011)

855

Sawai S, Saito K, "Triterpenoid biosynthesis and engineeringin plants" Frontiers in Plant Science 2 25 (2011)856

Scalbert A, Andres-Lacueva C, Arita M, Kroon P, Manach C,
Urpi-Sarda M, Wishart D, "Databases on Food Phytochemicals
and Their Health-Promoting Effects" Journal of Agriculturaland Food Chemistry 59 4331-4348 (2011)

857

858

859

860

861

862

Seki H, Sawai S, Ohyama K, Mizutani M, Ohnishi T, Sudo H,
Fukushima E, Akashi T, Aoki T, Saito K, Muranaka T, "Triterpene functional genomics in licorice for identification of
CYP72A154 involved in the biosynthesis of glycyrrhizin" The
Plant Cell 23 4112-4123 (2011)
Sekiyama Y, Chikayama E, Kikuchi J, "Evaluation of a semipolar solvent system as a step toward heteronuclear multidimensional NMR-based metabolomics for 13C-labeled bacteria,
plants, and animals" Analytical Chemistry 83 719-726 (2011)
Seo M, Koshiba T, "Transport of ABA from the site of biosynthesis to the site of action" Journal of Plant Research 124 501507 (2011)

863

864

865

Skirycz A, Claeys H, De Bodt S, Oikawa A, Shimoda S, Andriankaja M, Maleux K, Eloy N, Frederik C, Yoo S, Saito K, Inze D,

873

Stoz H, Jikumaru Y, Shimada Y, Sasaki E, Stingl N, Mueller M,
Kamiya Y, "Jasmonate-dependent and COI1-independent defense responses against Sclerotinia sclerotiorum in Arabidopsis
thaliana: Auxin is Part of COI1-independent defense signaling" Plant and Cell Physiology 52 1941-1956 (2011)874

Stoz H, Sawada Y, Shimada Y, Hirai MY, Sasaki E, Krischke M,
Brown P, Saito K, Kamiya Y, "Role of camalexin, indole glucosinolates, and side chain modification of glucosinolate-derived
isothiocyanates in defense of Arabidopsis against Sclerotinia
sclerotiorum" The Plant Journal 67 81-93 (2011)
Suzuki A, Suriyagoda L, Shigeyama T, Tominaga A, Sasaki M,
Hiratsuka Y, Yoshinaga A, Arima S, Agarie S, Sakai T, Inada
S, Jikumaru Y, Kamiya Y, Uchiumi T, Abe M, Hashiguchi M,
Akashi R, Sato S, Kaneko T, Tabata S, Hrsch A, "Lotus japonicus
nodulation is photomorphogenetically controlled by sensing
the red/far red (R/FR) ratio through jasmonic acid (JA) signaling" PNAS 108 16837-16842 (2011)

866

Takahashi H, Kopriva S, Giordano M, Saito K, Hell R, "Sulfur
assimilation in photosynthetic organisms: molecular functions
and regulations of transporters and assimilatory enzymes"
Annual Review of Plant Biology 62 157-84 (2011)

867

Takase T, Ishikawa H, Murakami H, Kikuchi J, Sato-Nara K,
Suzuki H, "The Circadian clock modulates water dynamics andaquaporin expression in Arabidopsis roots" Plant Cell Physiology 52 373-383 (2011)

868

869

870

871

Shin R, "Transcriptional Regulatory Components Responding
to Macronutrient Limitation" Journal of Plant Biology 54 286293 (2011)
Shin R, Jez J, Basra A, Zhang B, Schachtman D, "14-3-3 Proteins fine-tune plant nutrient metabolism" FEBS Letters 585
143-147 (2011)"Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a rolefor ethylene signaling in cell cycle arrest" The Plant Cell 23
1876-1888 (2011)

872

Takeda S, Hanano K, Kariya A, Shimizu S, Zhao L, Matsui M,
Tasaka M, Aida M, "CUP-SHAPED COTYLEDON1 transcription
factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells"
The Plant Journal 66 1066-1077 (2011)
Takeuchi K, Gyohda A, Tominaga M, Kawamatsu M, Hatakeyama A, Ishii N, Shimaya K, Nishimura T, Riemann M, Nick P,
Hashimoto M, Komano T, Endo A, Okamoto T, Jikumaru Y,
Kamiya Y, Terakawa T, Koshiba T, "RSOsPR10 expression in response to environmental stresses is regulated antagonisticallyby jasmonate/ethylene and salicylic Acid signaling pathways inrice roots" Plant and Cell Physiology 52 1686-1696 (2011)
Tanaka N, Itoh H, Sentoku N, Kojima M, Sakakibara H, Izawa
T, Itoh J, Nagato Y, "The COP1 ortholog PPS regulates thejuvenile-adult and vegetative-reproductive phase changes inrice" The Plant Cell 23 2143-2154 (2011)
Thierry D, Sedijani P, Kondou Y, Matsui M, de Jong G, Samsen
G, Wiese-Klinkenberg A, Primavesi L, Paul M, Schluepmann
H, "Growth arrest by trehalose-6-phosphate: an astonishingcase of primary metabolite control over growth by way of
the SnRK1 signaling pathway" Plant Physiology 157 160-174(2011)
To T, Kim J, Matsui A, Kurihara Y, Morosawa T, Ishida J, Tanaka
M, Endo T, Kakutani T, Toyoda T, Kimura H, Yokoyama S, Shinozaki K, Seki M, "Arabidopsis HDA6 regulates locus-directed
heterochromatin silencing in cooperation with MET1" PLoS
Genetics 7 e1002055 (2011)875

To T, Nakaminami K, Kim J, Morosawa T, Ishida J, Tanaka M,
Yokoyama S, Shinozaki K, Seki M, "Arabidopsis HDA6 is required for freezing tolerance" Biochemical and BiophysicalResearch Communications 406 414-419 (2011)
Tohge T, Kusano M, Fukushima A, Saito K, Fernie A, "Transcriptional and metabolic programs following exposure ofplants to UV-B irradiation" Plant Signaling & Behavior 6 19871992 (2011)
Tominaga R, Ishida T, Wada T, "Chapter tow - new insights
into the mechanism of development of Arabidopsis root hairs
and trichomes" International Review of Cell and Molecular
Biology 286 67-106 (2011)

Biological Chemistry 286 43577-43586 (2011)886

Yamazaki M, Saito K, "Molecular genetic study on the anthocyanin chemotypes of Perilla frutescens var. crispa" Natural
Product Communications 6 423-427 (2011)

887

Yasumitsu H, Mochida K, Yasuda C, Isobe M, Kawsar S, Fujii Y,
Matsumoto R, Kanaly R, Ozeki Y, "Antiproliferative effects ofgalectin-1 from Rana catesbeiana eggs on human leukemia
cells and its binding proteins in human cells" In Vitro Cellular
Developmental Biology: Animal 47 728-734 (2011)

888

Yokotani N, Higuchi M, Kondou Y, Ichikawa T, Iwabuchi M,
Hirochika H, Matsui M, Oda K, "A novel chloroplast protein,
CEST induces tolerance to multiple environmental stresses andreduces photooxidative damage in transgenic Arabidopsis"
Journal of Experimental Botany 62 557-569 (2011)889

Yoshida T, Ohama N, Nakajima J, Kidokoro S, Mizoi J, Nakashima K, Maruyama K, Kim J, Seki M, Todaka D, Osakabe
Y, Sakuma Y, Schoffl F, Shinozaki K, Shinozaki-Yamaguchi K, "Arabidopsis HsfA1 transcription factors function as the main
positive regulators in heat shock-responsive gene expression"
Molecular Genetics and Genomics 286 321-332 (2011)

876

Tominaga R, Iwata M, Nukumizu Y, Wada T, "Analysis of IIId,
IIIe and IVa group basic-helix-loop-helix proteins expressed in
Arabidopsis root epidermis" Plant Science 181 471-478 (2011)877

Toyokura K, Watanabe K, Oikawa A, Kusano M, Tameshige T,
Tatematsu K, Matsumoto N, Tsugeki R, Saito K, Okada K, "Succinic semialdehyde dehydrogenase is involved in the robust
patterning of Arabidopsis leaves along the adaxial-abaxial
axis" Plant Cell Physiology 52 1340-1353 (2011)

878

Ueda M, Matsui K, Ishiguro S, Kato T, Tabata S, Kobayashi M,
Seki M, Shinozaki K, Okada K, "Arabidopsis RPT2a encoding
the 26S proteasome subunit is required for various aspects ofroot meristem maintenance, and regulates gametogenesis redundantly with its homolog, RPT2b" Plant and Cell Physiology
52 1628-1640 (2011)890

Yoshimitsu Y, Tanaka K, Fukuda W, Asami T, Yoshida S, Hayashi
K, Kamiya Y, Jikumaru Y, Shigeta T, Nakamura Y, Matsuo T,
Okamoto S, "Transcription of DWARF4 Plays a Crucial Rolein Auxin-Regulated Root Elongation in Addition to Brassinosteroid Homeostasis in Arabidopsis Thaliana" PLoS One 6
e23851 (2011)879

Umezawa T, "Systems biology approaches to abscisic acid signaling" Journal of Plant Research 124 539-548 (2011)

891

880

Virapom V, Yamazaki M, Saito K, Denduangboripant J, Chayamarit K, Chuanasa T, Sukrong S, "Correlation of camptothecinproducing ability and phylogenetic relationship in the genus
Ophiorrhiza" Planta Medica 77 759-64 (2011)

Zhang Z, Ogawa M, Fleet C, Zentella R, Hu J, Heo J, Lim J, Kamiya Y, Yamaguchi S, Sun T, "SCARECROW-LIKE 3 promotes
gibberellin signaling by antagonizing master growth repressor
DELLA in Arabidopsis" Proceedings of the National Academyof Sciences of the United States of America 108 2160-2165(2011)

881

892

Wang J, Ma X, Kojima M, Sakakibara H, Hou B, "N-Glucosyltransferase UGT76C2 is involved in cytokinin homeostasis andcytokinin response in Arabidopsis thaliana" Plant Cell Physiology 52 2200-2213 (2011)

Zhao C, Hanada A, Yamaguchi S, Kamiya Y, Beers E, "The Arabidopsis Myb genes MYR1 and MYR2 are redundant negative
regulators of flowering time under decreased light intensity"
The Plant Journal 66 502-515 (2011)

882

893

Wang Y, Wu J, Nakamichi N, Sakakibara H, Nam H, Wu S,"LIGHT-REGULATED WD1 and PSEUDO-RESPONSE REGULATOR9 form a positive feedback regulatory loop in the Arabidopsis circadian clock" The Plant Cell 23 486-498 (2011)

883

Won C, Sheng X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y, "Conversion of tryptophan
to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis" Proceedingsof the National Academy of Sciences of the United States ofAmerica 108 18518-18523 (2011)

Zhu Z, An F, Feng Y, Li P, Xue L, A M, Jiang Z, Kim J, To T, Li
W, Zhang X, Yu Q, Dong Z, Chen W, Seki M, Zhou J, Hongwei
G, "Derepression of ethylene-stabilized transcription factors(EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis" Proceedings of the National Academyof Sciences of the United States of America 108 12539-12544(2011)

894

Afendi F, Okada T, Yamazaki M, Hirai-Morita A, Nakamura Y,
Nakamura K, Ikeda S, Takahashi H, Altaf-Ul-Amin M, Darusman L, Saito K, Kanaya S, "KNApSAcK Family Databases: Integrated metabolite-plant species databases for multifaceted
plant research" Plant Cell Physiology 53 e1 (2012)

895

Arita M, "From metabolic reactions to networks and pathways" Methods in Molecular Biology 804 93-106 (2012)

896

Bunsupa S, Katayama K, Ikeura E, Oikawa A, Toyooka K, Saito
K, Yamazaki M, "Lysine decarboxylase catalyzes the first stepof quinolizidine alkaloid biosynthesis and coevolved withalkaloid production in Leguminosae" The Plant Cell 24 12021216 (2012)

884

885

Wu G, Wang X, Li X, Kamiya Y, Otegui M, Chory J, "Methylation of a Phosphatase Specifies Dephosphorylation and
Degradation of Activated Brassinosteroid Receptors" Science
Signaling 4 ra29 (2011)
Yamada K, Kanai M, Osakabe Y, Ohiraki H, Shinozaki K,
Shinozaki-Yamaguchi K, "Monosaccharide absorption activityof Arabidopsis roots depends on expression profiles of transporter genes under high salinity conditions" The Journal of

PSC Publications 2000 – 2012

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Choudhary SP, Kanwar M, Bhardwaj R, Yu J-Q, Tran L-SP,"Chromium stress mitigation by polyamine-brassinosteroid
application involves phytohormonal and physiological strategies in Raphanus sativus L." PLoS One 7 e33210 (2012)
Choudhary S, Oral H, Bhardwaj R, Yu J, Tran LS, "Interaction ofbrassinosteroids and polyamines enhances copper stress tolerance in Raphanus sativus" Journal of Experimental Botany 63
5659-5675 (2012)

909

910

Kadota Y, Shirasu K, "The HSP90 complex of plants" Biochimica et Biophysica Acta 1823 689-697 (2012)911

Kanaya T, Hase K, Takahashi D, Fukuda S, Hoshino K, Sasaki I,
Hemmi H, Knoop KA, Kumar N, Sato M, Katsuno T, Yokosuka
O, Toyooka K, Nakai K, Sakamoto A, Kitahara Y, Jinnohara T,
McSorley SJ, Kaisho T, Williams IR, Ohno H. "The Ets Transcription Factor Spi-B Is Essential for the Differentiation of Intestinal Microfold (M) Cells" Nature Immunology 13 729-736(2012)

Choudhary S, Yu J, Yamaguchi-Shinozaki K, Shinozaki K, Tran
LS, "Benefits of brassinosteroid crosstalk" Trends in Plant Science 17 594-605 (2012)
Date Y, Iikura T, Yamazawa A, Moriya S, Kikuchi J, "Metabolic
Sequences of Anaerobic Fermentation on Glucose-Based Feeding Substrates Based on Correlation Analyses of Microbial andMetabolite Profiling" Journal of Proteome Research 11 56025610 (2012)
Date Y, Sakata K, Kikuchi J, "Chemical profiling of complex
biochemical mixtures from various seaweeds" Polymer Journal
44 888-894 (2012)
Endo A, Tatematsu K, Hanada K, Duermeyer L, Okamoto M,
Sakakibara K, Saito K, Toyoda T, Kawakami N, Kamiya Y, Seki
M, Nambara E, "Tissue-specific transcriptome analysis reveals
cell wall metabolism, flavonol biosynthesis, and defense responses are activated in the endosperm of germinating Arabidopsis thaliana seeds" Plant and Cell Physiology 53 16-27(2012)
Everroad R, Yoshida S, Tsuboi Y, Date Y, Kikuchi J, Moriya S,"Concentration of metabolites from low-density planktonic
communities for environmental metabolomics using nuclear
magnetic resonance spectroscopy" Journal of Visualized Experiments 62 e3163 (2012)
Frey A, Effroy D, Lefebvre V, Seo M, Perreau F, Berger A,
Sechet J, To A, North H, Marion-Poll A, "Epoxycarotenoid
cleavage by NCED5 fine-tunes ABA accumulation and affects
seed dormancy and drought tolerance with other NCED family members" The Plant Journal 70 501-512 (2012)
Fujita M, Fujita Y, Iuchi S, Yamada K, Kobayashi Y, Urano K,
Kobayashi M, Shinozaki-Yamaguchi K, Shinozaki K, "Naturalvariation in a polyamine transporter determines paraquat tolerance in Arabidopsis" Proceedings of the National Academyof Sciences of the United States of America 109 6343-6347(2012)
Fukushima A, Nishizawa T, Hayakumo M, Hikosaka S, Saito K,
Goto E, Kusano M, "Exploring Tomato Gene Functions Basedon Coexpression Modules Using Graph Clustering and Differential Coexpression Approaches" Plant Physiology 158 14871502 (2012)
Goh T, Kasahara H, Mimura T, Kamiya Y, Fukaki H, "Multiple
AUX/IAA-ARF modules regulate lateral root formation: therole of Arabidopsis SHY2/IAA3-mediated auxin signalling"
Philosophical Transactions of the Royal Society B 367 14611468 (2012)
Ha S, Vankova R, Yamaguchi-Shinozaki K, Shinozaki K, Tran
LS, "Cytokinins: metabolism and function in plant adaptation
to environmental stresses" Trends in Plant Science 17 172-179

Ishida T, Yoshimura M, Miura K, Sugimoto K, "MMS21/HPY2
and SIZ1, two Arabidopsis SUMO E3 ligases, have distinct functions in development" PLoS One 7 e46897 (2012)

912

913

914

915

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Kanno Y, Hanada A, Chiba Y, Ichikawa T, Nakazawa M, Matsui
M, Koshiba T, Kamiya Y, Seo M, "Identification of an abscisicacid transporter by functional screening using the receptor
complex as a sensor" Proceedings of the National Academy of
Sciences of the United States of America 109 9653-9658 (2012)
Kim J, Mizoi J, Kidokoro S, Maruyama K, Nakajima J, Nakashima K, Mitsuda N, Takiguchi Y, Takagi-Ohme M, Kondou Y,
Matsui M, Shinozaki K, Shinozaki-Yamaguchi K, "Arabidopsis
GROWTH-REGULATING FACTOR7 functions as a transcriptional repressor of abscisic acid- and osmotic stress-responsive
genes, including DREB2A" The Plant Cell 24 3393-3405 (2012)
Kim J, Nam J, John K, Kusano M, Oikawa A, Saito K, Lee C,"GC-TOF-MS- and CE-TOF-MS-based Metabolic Profiling ofCheonggukjang (Fast-fermented Bean Paste) during Fermentation and its correlation with Metabolic Pathways" Journalof Agricultural and Food Chemistry 60 9746-9753 (2012)
Kim J, To T, Ishida J, Matsui A, Kimura H, Seki M, "Transition ofchromatin status during the process of recovery from drought
stress in Arabidopsis thaliana" Plant and Cell Physiology 53
847-856 (2012)
Kim J, To T, Seki M, "An epigenetic integrator: new insights
into genome regulation, environmental stress responses anddevelopmental controls by HISTONE DEACETYLASE 6" Plant
and Cell Physiology 53 794-800 (2012)
Kimbara J, Yoshida M, Ito H, Hosoi K, Kusano M, Kobayashi M,
Ariizumi T, Asamizu E, Ezura H, "A novel class of sticky peel
and light green mutations causes cuticle deficiency in leaves
and fruits of tomato (Solanum lycopersicum)" Planta 236
1559-70 (2012)
Kobayashi K, Baba S, Obayashi T, Sato M, Toyooka K, Keranen
M, Aro E, Fukaki H, Ohta H, Sugimoto K, Masuda T, "Regulation of Root Greening by Light and Auxin/Cytokinin Signalingin Arabidopsis" The Plant Cell 24 1081-1095 (2012)

Moriya S, Kikuchi J, "Exploring the conformational space ofamorphous cellulose using NMR chemical shifts" Carbohydrate Polymers 90 1197-1203 (2012)

sawa T, Tanaka M, Toyoda T, Seki M, Ecker J, "Surveillance of
3' Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis" G3: Genes, Genomes, Genetics 2 487-498 (2012)(2012)

922

Kurusu T, Nishikawa D, Yamazaki Y, Gotoh M, Nakano M,
Hamada H, Yamanaka T, Iida K, Nakagawa Y, Saji H, Shinozaki
K, Iida H, Kuchitsu K, "Plasma membrane protein OsMCA1 is
involved in regulation of hypo-osmotic shock-induced Ca2+
influx and modulates generation of reactive oxygen species incultured rice cells" BMC Plant Biology 12 11 (2012)

923

Kusano M, Fukushima A, Naoko F, Okazaki Y, Kobayashi M,
Naoko O, Kaworu E, Saito K, "Deciphering starch quality ofrice kernels using metabolite profiling and pedigree network
analysis" Molecular Plant 5 442-451 (2012)
Kusano M, Saito K, "Role of Metabolomics in Crop Improvement" Journal of Plant Biochemistry and Biotechnology 21
24-31 (2012)

924

925

934

Nakabayashi K, Bartsch M, Xiang Y, Miatton E, Pellenghar S,
Yano R, Seo M, Soppe W, "The time required for dormancy
release in Arabidopsis is determined by DELAY OF GERMINATION1 protein levels in freshly harvested seeds" The Plant Cell
24 2826-2838 (2012)

935

Nakagami H, Sugiyama N, Ishihama Y, Shirasu K, "Shotguns
in the front line: Phosphoproteomics in plants" Plant and Cell
Physiology 53 118-124 (2012)

936

Nakaminami K, Matsui A, Shinozaki K, Seki M, "RNA regulation in plant abiotic stress responses" Biochimica et Biophysica
Acta 1819 149-153 (2012)

937

Nakashima K, Takasaki H, Mizoi J, Shinozaki K, ShinozakiYamaguchi K, "NAC transcription factors in plant abiotic stressresponses" Biochimica et Biophysica Acta 1819 97-103 (2012)

938

Nam Y-J, Tran L-SP, Kojima M, Sakakibara H, Nishiyama R, Shin
R, "Regulatory Roles of Cytokinins and Cytokinin Signaling in
Response to Potassium Deficiency in Arabidopsis" PLoS One 7
e47797 (2012)939

Nelissen H, Rymen B, Jikumaru Y, Demuynck K, Lijsebettens M,
Kamiya Y, Inze D, Beemster G, "A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell
division" Current Biology 22 1183-1187 (2012)

940

Nishimura T, Matano N, Morishima T, Kakinuma C, Hayashi
K, Komano T, Kubo M, Hasebe M, Kasahara H, Kamiya Y, Koshiba T, "Identification of IAA Transport Inhibitors Including
Compounds Affecting Cellular PIN Trafficking by Two Chemical Screening Approaches Using Maize Coleoptile Systems"
Plant and Cell Physiology 53 1671-1682 (2012)

941

Nishiyama R, Le DT, Watanabe Y, Matsui A, Tanaka M, Seki
M, Yamaguchi-Shinozaki K, Shinozaki K, Tran L-SP, "Transcriptome Analyses of a Salt-Tolerant Cytokinin-Deficient Mutant
Reveal Differential Regulation of Salt Stress Response by Cytokinin Deficiency" PLoS One 7 e32124 (2012)

942

Maruyama M, Hayashi S, Nishimura N, Ishide M, Kobayashi K,
Yagi Y, Asami T, Nakamura T, Shinozaki K, Hirayama T, "Isolation of Arabidopsis ahg11, a weak ABA hypersensitive mutant defective in nad4 RNA editing" Journal of Experimental
Botany 63 5301-5310 (2012)

Ogata Y, Chikayama E, Morioka Y, Everroad RC, Shino A, Matsushima A, Haruna H, Moriya S, Toyoda T, Kikuchi J, "ECOMICS: A Web-Based Toolkit for Investigating the Biomolecular
Web in Ecosystems Using a Trans-omics Approach" PLoS One
7 e30263 (2012)

943

Matsuda F, Okazaki Y, Oikawa A, Kusano M, Nakabayashi R,
Kikuchi J, Yonemaru J, Ebana K, Yano M, Saito K, "Dissectionof genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis" The Plant Journal 70
624-636 (2012)

Ogawa Y, Sakurai N, Oikawa A, Kai K, Morishita Y, Mori K,
Moriya K, Fujii F, Aoki K, Suzuki H, Ohta D, Saito K, Daisuke S,"High-throughput Cryopreservation of Plant Cell Cultures for
Functional Genomics" Plant and Cell Physiology 53 943-952(2012)

944

Oikawa A, Saito K, "Metabolite analyses of single cells" The
Plant Journal 70 30-38 (2012)

945

Okushita K, Chikayama E, Kikuchi J, "Solubilization Mechanism and Characterization of the Structural Change of Bacterial Cellulose in Regenerated States through Ionic Liquid
Treatment" Biomacromolecules 13 1323-1330 (2012)

946

Okushita K, Komatsu T, Chikayama E, Kikuchi J, "Statistical ap-

Le DT, Aldrich DL, Valliyodan B, Watanabe Y, Ha CV, Nishiyama
R, Guttikonda SK, Quach TN, Gutierrez-Gonzalez JJ, Tran
L-SP, Nguyen HT, "Evaluation of Candidate Reference Genes
for Normalization of Quantitative RT-PCR in Soybean Tissues
under Various Abiotic Stress Conditions" PLoS One 7 e46487(2012)

926

Le DT, Nishiyama R, Watanabe Y, Vankova R, Tanaka M, Seki
M, Ham LH, Yamaguchi-Shinozaki K, Shinozaki K, Tran L-SP,"Identification and expression analysis of cytokinin metabolic
genes in soybean under normal and drought conditions in relation to cytokinin levels" PLoS One 7 e42411 (2012)

927

Lin S, Yoshimoto M, Lyu P, Tang C, Arita M, "Phylogenomic
and Domain Analysis of Iterative Polyketide Synthases inAspergillus Species" Evolutionary bioinformatics 8 373-387(2012)

928

Ma Y, Qin F, Tran L-SP, "Contribution of genomics to genediscovery in plant abiotic stress responses" Molecular Plant 51176-1178 (2012)

929

930

931

Maruyama K, Todaka D, Mizoi J, Yoshida T, Kidokoro S, Matsukura S, Takasaki H, Sakurai T, Yamamoto Y, Yoshihara K, Kojima M, Sakakibara H, Shinozaki K, Shinozaki-Yamaguchi K,"Identification of cis-acting promoter elements in cold- anddehydration-induced transcriptional pathways in Arabidopsis,
rice, and soybean" DNA Research 19 37-49 (2012)

919

Komaki S, Sugimoto K, "Control of the plant cell cycle by developmental and environmental cues" Plant and Cell Physiology 53 953-964 (2012)

920

Kumar R, Tran L-SP, Neelakandan AK, Nguyen HT, "Higher
plant cytochrome b5 polypeptides modulate fatty acid desaturation" PLoS One 7 e31370 (2012)

932

Mizoi J, Shinozaki K, Shinozaki-Yamaguchi K, "AP2/ERF familytranscription factors in plant abiotic stress responses" Biochimica et Biophysica Acta 1819 86-96 (2012)

921

Kurihara Y, Schmitz R, Nery J, Schultz M, Kurihara E, Moro-

933

Mori T, Chikayama E, Tsuboi Y, Ishida N, Shisa N, Noritake Y,

PSC Publications 2000 – 2012proach for solid-state NMR spectra of cellulose derived froma series of variable parameters" Polymer Journal 44 895-900(2012)

947

948

949

950
951

952

953

954

Osakabe Y, Kawaoka A, Nishikubo N, Osakabe K, "Responses
to environmental stresses in woody plants: key to survive andlongevity" Journal of Plant Research 125 1-10 (2012)
Peng C, Lin S, Peng S, Lyu P, Arita M, Tang C, "Feature Identification of Compensatory Gene Pairs without Sequence
Homology in Yeast" Comparative and functional genomics
2012:653174 (2012)
Plackett A, Powers S, Fernandez-Garcia N, Urbanova T, Takebayashi Y, Seo M, Jikumaru Y, Benlloch R, Nilsson O, RuizRivero O, Phillips A, Wilson Z, Thomas S, Hedden P, "Analysisof the developmental roles of the Arabidopsis gibberellin
20-oxidases demonstrates that GA20ox1, -2, and -3 are thedominant paralogs" The Plant Cell 24 941-960 (2012)
Rymen B, Sugimoto K, "Tuning growth to the environmental
demands" Current Opinion in Plant Biology 15 683-690 (2012)
Sakakibara K, Fukushima A, Nakabayashi R, Hanada K, Matsuda F, Sugawara S, Inoue E, Kuromori T, Ito T, Shinozaki K,
Wangwattana B, Yamazaki M, Saito K, "Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis
thaliana" The Plant Journal 69 154-167 (2012)
Sakurai N, Ogata Y, Ara T, Sano R, Akimoto N, Hiruta A, Suzuki
H, Kajiwara M, Widyastuti U, Suharsono S, Yokota A, Akashi K,
Kikuchi J, Shibata D, "Development of KaPPA-View4 for omics
studies on Jatropha and a database system KaPPA-Loader forconstruction of local omics databases" Plant Biotechnology 29
131-135 (2012)
Schneider K, Breuer C, Kawamura A, Jikumaru Y, Hanada A,
Fujioka S, Ichikawa T, Kondou Y, Matsui M, Kamiya Y, Yamaguchi S, Sugimoto K, "Arabidopsis PIZZA has the capacity toacylate brassinosteroids" PLoS One 7 e46805 (2012)
Seo M, Jikumaru Y, Kamiya Y, "Profiling of hormones and related metabolites in seed dormancy and germination studies"
Methods in Molecular Biology 773 99-111 (2012)

955

Shigeyama T, Tominaga A, Arima S, Sakai T, Inada S, Jikumaru
Y, Kamiya Y, Uchiumi T, Abe M, Hashiguchi M, Akashi R, Hirsch
A, Suzuki A, "Additional cause for reduced JA-Ile in the rootof a Lotus japonicus phyB mutant" Plant Signaling & Behavior
7 746-748 (2012)

956

Shimamura M, Itouga M, Tsubota H, "Evolution of apolar
sporocytes in marchantialean liverworts: implications frommolecular phylogeny" Journal of Plant Research 125 197-206(2012)

957

Takahashi H, Ozawa A, Nemoto K, Nozawa A, Seki M, Shinozaki K, Takeda H, Endo Y, Sawasaki T, "Genome-wide biochemical analysis of Arabidopsis protein phosphatase using awheat cell-free system" FEBS Letters 586 3134-3141 (2012)

958

Tanaka H, Osakabe Y, Katsura S, Mizuno S, Maruyama K, Kusakabe K, Mizoi J, Shinozaki K, Shinozaki-Yamaguchi K, "Abiotic stress-inducible receptor-like kinases negatively control
ABA signaling in Arabidopsis" The Plant Journal 70 599-613(2012)

959

Toh S, Kamiya Y, Kawakami N, Nambara E, McCourt P, Tsuchiya Y, "Thermoinhibition Uncovers a Role for Strigolactones in
Arabidopsis Seed Germination" Plant Cell Physiology 53 107117 (2012)

fold conserved across plant pathogenic oomycete species"
PLoS Pathogens 8 e1002400 (2012)

972

Xu Z, Lee K, Dong T, Jeong J, Jin J, Kanno Y, Kim D, Kim S,
Seo M, Bressan R, Yun D, Hwang I, "A vacuolar β -glucosidase
homolog that possesses glucose-conjugated abscisic acidhydrolyzing activity plays an important role in osmotic stressresponses in Arabidopsis" The Plant Cell 24 2184-2199 (2012)

973

Yamaguchi M, Takechi K, Myouga F, Imura S, Sato H, Takio S,
Shinozaki K, Takano H, "Loss of the Plastid Envelope Protein
AtLrgB Causes Spontaneous Chlorotic Cell Death in Arabidopsis thaliana" Plant and Cell Physiology 53 125-134 (2012)960

Tokmakov A, Kurotani A, Takagi T, Toyama M, Shirouzu M,
Fukami Y, Yokoyama S, "Multiple post-translational modifications affect heterologous protein synthesis" The Journal of
Biological Chemistry 287 27106-27116 (2012)

961

Tokunaga H, Kojima M, Kuroha T, Ishida T, Sugimoto K, Kiba T,
Sakakibara H, "Arabidopsis lonely guy (LOG) multiple mutants
reveal a central role of the LOG-dependent pathway in cytokinin activation" The Plant Journal 69 355-365 (2012)

962

974

Tominaga R, Iwata M, Nukumizu Y, Sano R, Wada T, "A fulllength R-like basic-helix-loop-helix transcription factor is required for anthocyanin upregulation whereas the N-terminal
region regulates epidermal hair formation" Plant Science 183
115-122 (2012)

Yamamura M, Noda S, Hattori T, Shino A, Kikuchi J, Takabe K,
Suzuki S, Shibata D, Umezawa T, "Characterization of lignocellulose of Erianthus ravennae in relation to enzymatic saccharification efficiency" Plant Biotechnology 29 1-11 (2012)

975

Tominaga R, Nukumizu Y, Wada T, "Amino acid substitution
converts WEREWOLF function from an activator to a repressorof Arabidopsis non-hair cell development" Plant Science 183
37-42 (2012)

Yanagawa Y, "Ubiquitin/proteasome-mediated proteolysis is
involved in the response to flooding stress in soybean roots,
independent of oxygen limitation" Plant Science 185-186 250258 (2012)

976

Yazawa k, Jiang C, Kojima M, Sakakibara H, Takatsuji H, "Reduction of abscisic acid levels or inhibition of abscisic acid signaling in rice during the early phase of Magnaporthe oryzae
infection decreases its susceptibility to the fungus" Physiological and Molecular Plant Pathology 78 1-7 (2012)

977

Yoshimoto K, Noutoshi Y, Hayashi K, Shirasu K, Takahashi T,
Motose H, "A Chemical Biology Approach Reveals an Opposite Action between Thermospermine and Auxin in Xylem
Development in Arabidopsis thaliana" Plant Cell Physiology
53 1-40 (2012)

978Breuer C, Morohashi K, Kawamura A, Takahashi N. Ishida T,
Umeda M, Grotewold E, Sugimoto K, "Transcriptional repression of the APC/C activator CCS52A1 promotes active termination of cell growth" The EMBO Journal 31 4488-4501 (2012)

979

Kobayashi K, Narise T, Sonoike K, Hashimoto H, Sato N, Kondo
M, Nishimura M, Sato M, Toyooka K, Sugimoto K, Wada H,
Masuda T, Ohta H, "Role of galactolipid biosynthesis in coordinated development of photosynthetic complexes andthylakoid membranes during chloroplast biogenesis in Arabidopsis" The Plant Journal 73 250-261 (2013)

963

964

Tominaga T, Sano K, Kikuchi J, Mitomo H, Ijiro K, Osada Y,"Hydrophilic Double-Network Polymers that Sustain High Mechanical Modulus under 80% Humidity" ACS Macro Letters 1
432-436 (2012)

965

Ueno S, Moriguchi Y, Uchiyama K, Ujino-Ihara T, Futamura
N, Sakurai T, Shinohara K, Tsumura Y, "A second generation
framework for the analysis of microsatellites in expressedsequence tags and the development of EST-SSR markers fora conifer, Cryptomeria japonica" BMC Genomics 13 136-151(2012)

966

Uraji M, Katagiri T, Okuma E, Ye W, Hossain M, Masuda C,
Miura A, Nakamura Y, Mori I, Shinozaki K, Murata Y, "Cooperative function of PLDδ and PLDα 1 in Abscisic Acid-induced
stomatal closure in Arabidopsis" Plant Physiology 159 450-460(2012)

967

Utsumi Y, Tanaka M, Morosawa T, Kurotani A, Yoshida T,
Mochida K, Matsui A, Umemura Y, Ishitani M, Shinozaki K,
Sakurai T, Seki M, "Transcriptome analysis using a high-density
oligomicroarray under drought stress in various genotypes of
cassava: an important tropical crop" DNA Research 19 335-345(2012)

968

Vergara L, Everroad R, Andraca G, Kikuchi J, Makihara H,"Plant host differences between Cossus redtenbacheri and
Cossus insularis: insights from mechanical tests and molecularphylogeny" Bulletin of Insectology 65 217-222 (2012)969

Wada M, Takahashi H, Altaf-Ul-Amin M, Nakamura K, Hirai
MY, Ohta D, Kanaya K, "Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes" Gene 503 56-64 (2012)

970

Watanabe T, Shino A, Akashi K, Kikuchi J, "Spectroscopic investigation of tissue-specific biomass profiling for Jatropha
curcas L." Plant Biotechnology 29 163-170 (2012)

971

Win Y, Krasileva K, Kamoun S, Shirasu K, Staskawicz B, Banfield M, "Sequence divergent RXLR effectors share a structural