Photon Factory Activity Report 2017 #35 (2018) B

Publication List
1A
Islam, M.M., Kuroda, Y.
A hetero-micro-seeding strategy for readily crystallizing closely
related protein variants
Biochem. Biophys. Res. Commun. 493, 504 (2017).
aA
Fushinobu, S.
Crystal structures of carbohydrate-active enzymes withpotential for practical oligosaccharide synthesis
Int. J. Microgravity Sci. Appl. 34, 340109 (2017).
aA
Roppongi, S., Suzuki, Y., Tateoka, C., Fujimoto, M.,
Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y.,
Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Crystal structures of a bacterial dipeptidyl peptidase IV reveal anovel substrate recognition mechanism distinct from that of
mammalian orthologues
Sci. Rep. 8, 2714 (2018).
aA
Sato, M., Liebschner, D., Yamada, Y., Matsugaki, N.,
Arakawa, T., Wills, S.S., Hattie, M., Stubbs, K.A., Ito, T.,
Senda, T., Ashida, H., Fushinobu, S.
The first crystal structure of a family 129 glycoside hydrolasefrom a probiotic bacterium reveals critical residues and metal
cofactors
J. Biol. Chem. 292, 12126 (2017).
aA
Roppongi, S., Tateoka, C., Fujimoto, M., Iizuka, I.,
Morisawa, S., Nakamura, A., Honma, N., Suzuki, Y., Shida, Y.,
Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Periplasmic form of dipeptidyl aminopeptidase IV from
Pseudoxanthomonas mexicana WO24: purification, kinetic
characterization, crystallization and X-ray crystallographic
analysis
Acta Crystallogr. F-Struct. Biol. Commun. 73, 601 (2017).
aA
Koyama, M., Hirano, H., Shirai, N., Matsuura, Y.
Crystal structure of the Xpo1p nuclear export complex bound to
the SxFG/PxFG repeats of the nucleoporin Nup42p
Genes Cells 22, 861 (2017).
aA
Yamada, C., Gotoh, A., Sakanaka, M., Hattie, M.,
Stubbs, K.A., Katayama-Ikegami, A., Hirose, J., Kurihara, S.,
Arakawa, T., Kitaoka, M., Okuda, S., Katayama, T.,
Fushinobu, S.
Molecular insight into evolution of symbiosis between breastfed infants and a member of the human gut microbiome
Bifidobacterium longum
Cell Chem. Biol. 24, 515 (2017).
aA
Taguchi, H., Xie, Y., Horikoshi, N., Maehara, K., Harada, A.,
Nogami, J., Sato, K., Arimura, Y., Osakabe, A., Kujirai, T.,
Iwasaki, T., Semba, Y., Tachibana, T., Kimura, H.,
Ohkawa, Y., Kurumizaka, H.
Crystal Structure and Characterization of Novel Human
Histone H3 Variants, H3.6, H3.7, and H3.8
Biochemistry 56, 2184 (2017).
aA
Mizobuchi, T., Nonaka, R., Yoshimura, M., Abe, K.,
Takahashi, S., Kera, Y., Goto, M.
Crystal structure of a pyridoxal 5'-phosphate-dependent
aspartate racemase derived from the bivalve mollusc Scapharcabroughtonii
Acta Crystallogr. F-Struct. Biol. Commun. 73, 651 (2017).
aA

Maegawa, K., Watanabe, S., Noi, K., Okumura, M.,
Amagai, Y., Inoue, M., Ushioda, R., Nagata, K., Ogura, T.,
Inaba, K.
The highly dynamic nature of ERdj5 is key to efficientelimination of aberrant protein oligomers through ERassociated degradation
Structure 25, 846 (2017).
aA
Im, D., Matsui, D., Arakawa, T., Isobe, K., Asano, Y.
Fushinobu S.
Ligand complex structures of L-amino acidoxidase/monooxygenase from Pseudomonas sp. AIU 813 andits conformational change
FEBS Open Bio. 8, 314 (2018).
aA
Takizawa, M., Arimori, T., Taniguchi, Y., Kitago, Y.,
Yamashita, E., Takagi, J., Sekiguchi, K.
Mechanistic basis for the recognition of laminin-511 by α6β1
integrin
Sci. Adv. 3, e1701497 (2017).
aA
Nakamura, F., Kudo, N., Tomachi, Y., Nakata, A.,
Takemoto, M., Ito, A., Tabei, H., Arai, D.,
Voogd, N. de, Yoshida, M., Nakao, Y., Fusetani, N.
Halistanol sulfates I and J, new SIRT1-3 inhibitory steroid
sulfates from a marine sponge of the genus Halichondria
J. Antibiot. 71, 273 (2018).
aA
Kondo, J., Tada, Y., Dairaku, T., Hattori, Y., Saneyoshi, H.,
Ono, A., Tanaka, Y.
A metallo-DNA nanowire with uninterrupted one-dimensional
silver array
Nat. Chem. 9, 956 (2017).
aA
Nagae, M., Mishra, S.K., Neyazaki, M., Oi, R., Ikeda, A.,
Matsugaki, N., Akashi, S., Manya, H., Mizuno, M., Yagi, H.,
Kato, K., Senda, T., Endo, T., Nogi, T., Yamaguchi, Y.
3D structural analysis of protein O-mannosyl kinase, POMK, acausative gene product of dystroglycanopathy.
Genes Cells 22, 348 (2017).
aA
Granell, M., Namura, M., Alvira, S., Kanamaru, S.,
van Raaij, M.J.
Crystal structure of the carboxy-terminal region of thebacteriophage T4 proximal long tail fiber protein Gp34
Viruses 9, 168 (2017).
aA
Ou, X., Guo, J., Wang, L., Yang, H., Liu, X., Sun, J., Liu, Z.
Ion- and water-binding sites inside an occluded hourglass poreof a trimeric intracellular cation (TRIC) channel
BMC Struct. Biol. 15, 31 (2017).
Matsui, T., Kodama, T., Mori, T., Tadakoshi, T., Noguchi, H.,
Abe, I., Morita, H.
2-Alkylquinolone alkaloid biosynthesis in the medicinal plant
Evodia rutaecarpa involves collaboration of two novel type III
polyketide synthases
J. Biol. Chem. 292, 9117 (2017).
aA
Jang, J.Y., Koh, M., Bae, H., An, D.R., Im, H.N., Kim, H.S.,
Yoon, J.Y., Yoon, H.-J., Han, B.W., Park, S.B., Suh, S.W.
Structural basis for differential activities of enantiomeric
PPARγ agonists: Binding of S35 to the alternate site
Biochim. Biophys. Acta - Proteins and Proteomics 1865, 674(2017).
aA
Fujimoto, Z., Suzuki, N., Kishine, N., Ichinose, H.,
Momma, M., Kimura, A., Funane, K.
Carbohydrate-binding architecture of the multi-modular
α-1,6-glucosyltransferase from Paenibacillus sp. 598K, which
produces α-1,6-glucosyl-α-glucosaccharides from starch
Biochem. J. 474, 2763 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Kato, D., Osakabe, A., Arimura, Y., Mizukami, Y.,
Horikoshi, N., Saikusa, K., Akashi, S., Nishimura, Y.,
Park, S.-Y., Nogami, J., Maehara, K., Ohkawa, Y.,
Matsumoto, A., Kono, H., Inoue, R., Sugiyama, M.,
Kurumizaka, H.
Crystal structure of the overlapping dinucleosome composed ofhexasome and octasome
Science 356, 205 (2017).
aA
Chek, M.F., Kim, S.-Y., Mori, T., Arsad, H., Samian, M.R.,
Sudesh, K., Hakoshima, T.
Structure of polyhydroxyalkanoate (PHA) synthase PhaC from
Chromobacterium sp. USM2, producing biodegradable plastics.
Sci. Rep. 7, 5312 (2017).
aA
Uraji, M., Tamura, H., Mizohata, E., Arima, J., Wan, K.,
Ogawa, K., Inoue, T., Hatanaka, T.
Loop of Streptomyces feruloyl esterase plays an important rolein the enzyme's catalyzing the release of ferulic acid frombiomass
Appl. Environ. Microbiol. 84, e02300-17 (2018).
aA
Nakashima, Y., Mori, T., Nakamura, H., Awakawa, T.,
Hoshino, S., Senda, M., Senda, T., Abe, I.
Structure function and engineering of multifunctional non-heme
iron dependent oxygenases in fungal meroterpenoid
biosynthesis
Nat. Commun. 9, 104 02371 (2018).
aA
Nagae, M., Liebschner, D., Yamada, Y.,
Morita-Matsumoto, K., Matsugaki, N., Senda, T., Fujita, M.,
Kinoshita, T., Yamaguchi, Y.
Crystallographic analysis of murine p24γ2 Golgi dynamics
domainProteins: Struct. Funct. Bioinf. 85, 764 (2017).
aA
Terawaki, S., Fujita, S., Katsutani, T., Shiomi, K.,
Keino-Masu, K., Masu, M., Wakamatsu, K., Shibata, N.,
Higuchi, Y.
Structural basis for Ccd1 auto-inhibition in the Wnt pathway
through homomerization of the DIX domain
Sci. Rep. 7, 7739 (2017).

aA
Li, S., Teng, X., Su, L., Mao, G., Xu, Y., Li, T., Liu, R.,
Zhang, Q., Wang, Y., Bartlam, M.
Structure and characterization of a NAD(P)H-dependent
carbonyl reductase from Pseudomonas aeruginosa PAO1
FEBS Lett. 591, 1785 (2017).
aA
Kondo, J., Sugawara, T., Saneyoshi, H., Ono, A.
Crystal structure of a DNA duplex containing four Ag(I) ions inconsecutive dinuclear Ag(I)-mediated base pairs:
4-thiothymine-2Ag(I)-4-thiothymine
Chem. Commun. 53, 11747 (2017).
aA
Nagata, R., Fujihashi, M., Kawamura, H., Sato, T., Fujita, T.,
Atomi, H., Miki, K.
Structural Study on the Reaction Mechanism of a Free Serine
Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol. 12, 1514 (2017).

aA
Watanabe, S., Harayama, M., Kanemura, S., Sitia, R., Inaba, K.
Structural basis of pH-dependent client binding by ERp44, a
key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A. 114, E3224 (2017).
aA
Yasutake, Y., Hattori, S., Hayashi, H., Matsuda, K.,
Tamura, N., Kohgo, S., Maeda, K., Mitsuya, H.
HIV-1 with HBV-associated Q151M substitution in RT
becomes highly susceptible to entecavir: structural insights into
HBV-RT inhibition by entecavirSci. Rep. 8, 1624 (2018).
aA

Motoyama, T., Nakano, S., Yamamoto, Y., Tokiwa, H.,
Asano, Y., Ito, S.
Product release mechanism associated with structural changes
in monomeric L-threonine 3-dehydrogenase
Biochemistry 56, 5758 (2017).
aA
Jo, C.H., Son, J., Kim, S., Oda, T., Kim, J., Lee, M.-R.,
Sato, M., Kim, H.T., Unzai, S., Park, S.-Y., Hwang, K.Y.
Structural insights into a 20.8-kDa tegumental-allergen-like(TAL) protein from Clonorchis sinensis
Sci. Rep. 7, 1764 (2017).
aA
Gao, Y., Zhang, Q., Lang, Y., Liu, Y., Dong, X., Chen, Z.,
Tian, W., Tang, J., Wu, W., Tong, Y., Chen, Z.
Human apo-SRP72 and SRP68/72 complex structures reveal
the molecular basis of protein translocation
J. Mol. Cell Biol. 9, 220 (2017).
aA
Parker, J.L., Newstead, S.
Structural basis of nucleotide sugar transport across the Golgi
membrane.
Nature 551, 521 (2017).
aA
Jungnickel, K.E.J., Parker, J.L., Newstead, S.
Structural basis for amino acid transport by the CAT family of
SLC7 transporters
Nat. Commun. 9, 550 (2018).
aA
Fujita, J., Maeda, Y., Mizohata, E., Inoue, T., Kaul, M.,
Parhi, A.K., Lavoie, E.J., Pilch, D.S., Matsumura, H.
Structural Flexibility of an Inhibitor Overcomes Drug
Resistance Mutations in Staphylococcus aureus FtsZACS Chem. Biol. 12, 1947 (2017).
aA
Goto-Ito, S., Yamagata, A., Sato, Y., Uemura, T.,
Shiroshima, T., Maeda, A., Imai, A., Mori, H., Yoshida, T.,
Fukai, S.
Structural basis of trans-synaptic interactions between PTPδand SALMs for inducing synapse formation.
Nat. Commun. 9, 269 (2018).
aA
Wong, C.P., Awakawa, T., Nakashima, Y., Mori, T., Zhu, Q.,
Liu, X., Abe, I.
Two Distinct Substrate Binding Modes for the Normal andReverse Prenylation of Hapalindoles by the Prenyltransferase
AmbP3
Angew. Chem. Int. Ed. 57, 560 (2018).
aA
Harada, A., Kamimura, N., Takeuchi, K., Yu, H.Y., Masai, E.,
Senda, T.
The crystal structure of a new O-demethylase from
Sphingobium sp. strain SYK-6
FEBS J. 284, 1855 (2017).
aA
Lian, T.-F., Xu, Y.-P., Li, L.-F., Su, X.-D.
Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the
Mechanism of Enhanced Interaction with DNA.
Cell Rep. 19, 1334 (2017).
aA
Hashiguchi, T., Fukuda, Y., Matsuoka, R., Kuroda, D.,
Kubota, M., Shirogane, Y., Watanabe, S., Tsumoto, K.,
Kohda, D., Karl, P. R., Yanagi, Y.
Structures of the prefusion form of measles virus fusion protein
in complex with inhibitors
Proc. Natl. Acad. Sci. U.S.A. 115, 2496 (2018).
aA
Shimizu, H., Toma-Fukai, S., Saijo, S., Shimizu, N., Kontani,K., Katada, T., Shimizu, T.
Structure-based analysis of the guanine nucleotide exchange
factor SmgGDS reveals armadillo-repeat motifs and key
regions for activity and GTPase binding
J. Biol. Chem. 292, 13441 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Ishiyama, S., Nishiyama, A., Saeki, Y., Moritsugu, K.,
Morimoto, D., Yamaguchi, L., Arai, N., Matsumura, R.,
Kawakami, T., Mishima, Y., Hojo, H., Shimamura, S.,
Ishikawa, F., Tajima, S., Tanaka, K., Ariyoshi, M.,
Shirakawa, M., Ikeguchi, M., Kidera, A., Suetake, I., Arita, K.,
Nakanishi, M.
Structure of the Dnmt1 Reader Module Complexed with a
Unique Two-Mono-Ubiquitin Mark on Histone H3 Reveals theBasis for DNA Methylation MaintenanceMol. Cell 68, 350 (2017).
aA
Lu, G., Xu, Y., Zhang, K., Xiong, Y., Li, H., Cui, L., Wang, X.,
Lou, J., Zhai, Y., Sun, F., Zhang, X.C.
Crystal structure of E. coli apolipoprotein N-acyl transferase
Nat. Commun. 8, 15948 (2017).
aA
Sheng, G., Gogakos, T., Wang, J., Zhao, H., Serganov, A.,
Juranek, S., Tuschl, T., Patel, D.J., Wang, Y.
Structure/cleavage-based insights into helical perturbations atbulge sites within T. thermophilus Argonaute silencing
complexes
Nucl. Acids Res. 45, 9149 (2017).
aA
Koyama, M., Sasaki, T., Sasaki, N., Matsuura, Y.
Crystal structure of human WBSCR16, an RCC1-like protein in
mitochondria
Protein Sci. 26, 1870 (2017).
aA
Lee, D.B., Kim, J.-M., Seok, J.H., Lee, J.-H., Jo, J.D.,
Mun, J.Y., Conrad, C., Coe, J., Nelson, G., Hogue, B.,
White, T.A., Zatsepin, N., Weierstall, U., Barty, A.,
Chapman, H., Fromme, P., Spence, J., Chung, M.S., Oh, C.-H.,
Kim, K.H.
Supersaturation-controlled microcrystallization andvisualization analysis for serial femtosecond crystallography
Sci. Rep. 8, 2541 (2018).
aA
Jang, J.Y., Bae, H., Lee, Y.J., Choi, Y.I., Kim, H.-J., Park,
S.B., Suh, S.W., Kim, S.W., Han, B.W.
Structural Basis for the Enhanced Anti-Diabetic Efficacy ofLobeglitazone on PPAR 
Sci. Rep. 8, 31 (2018).
aA
Kanai, Y., Harada, A., Shibata, T., Nishimura, R., Namiki, K.,
Watanabe, M., Nakamura, S., Yumoto, F., Senda, T., Suzuki,
A., Neya, S., Yamamoto, Y.
Characterization of Heme Orientational Disorder in a
Myoglobin Reconstituted with a Trifluoromethyl-GroupSubstituted Heme Cofactor
Biochemistry 56, 4500 (2017).
aA
Koentjoro, M.P., Adachi, N., Senda, M., Ogawa, N., Senda, T.
Crystal structure of the DNA-binding domain of the LysR-typetranscriptional regulator CbnR in complex with a DNA
fragment of the recognition-binding site in the promoter region
FEBS J. 285, 977 (2018).
aA
Arai, K., Takei, T., Okumura, M., Watanabe, S., Amagai, Y.,
Asahina, Y., Moroder, L., Hojo, H., Inaba, K., Iwaoka, M.
Preparation of Selenoinsulin as a Long-Lasting Insulin
Analogue
Angew. Chem. Int. Ed. 56, 5522 (2017).
Former 1A
Yamauchi, T., Ueda, H., Ohwada, K., Nakao, H., Ueda, Y.
Devil's staircase of odd-number charge order modulations indivalent β-vanadium bronzes under pressure
Phys. Rev. B 97, 125138 (2018).
C-terminal dimerization of apo-cyclic AMP receptor protein
validated in solution
FEBS Lett. 591, 1064 (2017).

2A
Nishiyama, N., Mashiko, H., Yoshimatsu, K., Horiba, K.,
Kumigashira, H., Ohtomo, A.
Highly oriented epitaxial CaFe2O4 thin films on TiO2 substrates
grown by pulsed-laser deposition
Thin Solid Films 638, 406 (2017).
aA
Watanabe, N., Kim, J., Ide, K., Hiramatsu, H., Kumigashira, H.,
Ueda, S., Hosono, H., Kamiya, T.
Amorphous Gallium Oxide as an Improved Host for Inorganic
Light-Emitting Thin Film Semiconductor Fabricated at Room
Temperature on GlassECS J. Solid State Sci. Technol. 6, 410 (2017).
aA
Horiba, K., Yukawa, R., Mitsuhashi, T., Kitamura, M.,
Inoshita, T., Hamada, N., Otani, S., Ohashi, N., Maki, S.,
Yamaura, J., Hosono, H., Murakami, Y., Kumigashira, H.
Semimetallic bands derived from interlayer electrons in thequasi-two-dimensional electride Y2C
Phys. Rev. B 96, 045101 (2017).
aA
Yoshimatsu, K., Mashiko, H., Umezawa, N., Horiba, K.,
Kumigashira, H., Ohtomo, A.
Electronic Structures and Photoanodic Properties of Ilmenitetype MTiO3 Epitaxial Films (M = Mn, Fe, Co, Ni)
J. Phys. Chem. C 121, 18717 (2017).
Aa
Hagiwara, K., Takeno, Y., Ohtsubo, Y., Yukawa, R.,
Kobayashi, M., Horiba, K., Kumigashira, H., Rault, J.,
Le Fevre, P., Bertran, F., Taleb-Ibrahimi, A., Iga, F.,
Kimura, S.-I.
Temperature dependence of Yb valence in the sub-surface of
YbB12(001)
J. Phys.: Conf. Ser. 807, 012003 (2017).
aA
Kobayashi, M., Yoshimatsu, K., Mitsuhashi, T., Kitamura, M.,
Sakai, E., Yukawa, R., Minohara, M., Fujimori, A., Horiba, K.,
Kumigashira, H.
Emergence of Quantum Critical Behavior in Metallic QuantumWell States of Strongly Correlated Oxides
Sci. Rep. 7, 16621 (2017).
aA
Namiki, W., Takayanagi, M., Furuichi, S., Tsuchiya, T.,
Minohara, M., Kobayashi, M., Horiba, K., Kumigashira, H.,
Higuchi, T.
Electron-Ion Mixed Conduction of Nd0.6Sr0.4FeO3 Cathode
Electrode Thin Film for Solid Oxide Fuel CellECS Trans. 75, 83 (2017).
aA
Takayanagi, M., Furuichi, S., Namiki, W., Tsuchiya, T.,
Minohara, M., Kobayashi, M., Horiba, K., Kumigashira, H.,
Higuchi, T.
Proton Conduction on YSZ Electrolyte Thin Films Prepared by
RF Magnetron Sputtering
ECS Trans. 75, 115 (2017).
aA
Furuichi, S., Tsuchiya, T., Minohara, M., Kobayashi, M.,
Horiba, K., Kumigashira, H., Higuchi, T.
Ion Conduction of BaPrO3-δ Thin Film with Mixed ValenceState for SOFC Anode ElectrodeECS Trans. 75, 99 (2017).
aA
Tsuchiya, T., Kawamura, K., Namiki, W., Furuichi, S.,
Takayanagi, M., Minohara, M., Kobayashi, M., Horiba, K.,
Kumigashira, H., Terabe, K., Higuchi, T.
Resonant Photoemission and X-ray Absorption Spectroscopies
of Lithiated Magnetite Thin Film
Jpn. J. Appl. Phys. 56, 04CK01 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
Namiki, W., Tsuchiya, T., Takayanagi, M., Furuichi, S.,
Minohara, M., Kobayashi, M., Horiba, K., Kumigashira, H.,
Higuchi, T.
Electron Conduction of Nd0.6Sr0.4FeO3- Thin Film with
Oxygen Vacancies Prepared by RF Magnetron Sputtering
J. Phys. Soc. Jpn. 86, 074704 (2017).
aA
Furuichi, S., Tsuchiya, T., Horiba, K., Kobayashi, M.,
Minohara, M., Kumigashira, H., Higuchi, T.
Structural and Electrical Properties of BaPrO3- Thin Film with
Oxygen Vacancies
Trans. Mater. Res. Soc. Japan 42, 15 (2017).
aA
Takayanagi, M., Tsuchiya, T., Minohara, M., Kobayashi, M.,
Horiba, K., Kumigashira, H., Higuchi, T.
Surface Electronic Structure of Proton-doped YSZ Thin Filmby Soft-X-ray Photoemission Spectroscopy
Trans. Mater. Res. Soc. Japan 42, 61 (2017).
aA
Oinuma, H., Souma, S., Takane, D., Nakamura, T.,
Nakayama, K., Mitsuhashi, T., Horiba, K., Kumigashira, H.,
Yoshida, M., Ochiai, A., Takahashi, T., Sato, T.
Three-dimensional band structure of LaSb and CeSb: Absenceof band inversion
Phys. Rev. B 96, 041120(R) (2017).
aA
Obata, Y., Yukawa, R., Horiba, K., Kumigashira, H., Toda, Y.,
Matsuishi, S., Hosono, H.
ARPES studies of the inverse perovskite Ca 3PbO: Experimental
confirmation of a candidate 3D Dirac fermion system
Phys. Rev. B 96, 155109 (2017).
aA
Okada, Y., Shiau, S.-Y., Chang, T.-R., Chang, G.,
Kobayashi, M., Shimizu, R., Jeng, H.-T., Shiraki, S.,
Kumigashira, H., Bansil, A., Lin, H., Hitosugi, T.
Quasiparticle Interference on Cubic Perovskite Oxide Surfaces
Phys. Rev. Lett. 119, 086801 (2017).
aA
Takayanagi, M., Tsuchiya, T., Kawamura, K., Minohara, M.,
Horiba, K., Kumigashira, H., Higuchi, T.
Thickness-dependent surface proton conduction in (100)oriented yttria-stabilized zirconia thin film
Solid State Ion. 311, 46 (2017).
aA
Lee, C.-C., Feng, B., D'Angelo, M., Yukawa, R., Liu, R.-Y.,
Kondo, T., Kumigashira, H., Matsuda, I., Ozaki, T.
Peculiar bonding associated with atomic doping and hidden
honeycombs in borophene
Phys. Rev. B 97, 075430 (2018).
aA
Takane, D., Nakayama, K., Souma, S., Wada, T., Okamoto, Y.,
Takenaka, K., Yamakawa, Y., Yamakage, A., Mitsuhashi, T.,
Horiba, K., Kumigashira, H., Takahashi, T., Sato, T.
Observation of Dirac-like energy band and ring-torus Fermi
surface associated with the nodal line in topological insulator
CaAgAsnpj Quantum Mater. 3, 1 (2018).
2B
Hayakawa, T., Arakawa, M., Sarugaku, S., Ando, K.,
Tobita, K., Kiyomura, Y., Kawano, T., Terasaki, A.
Characterization of Cerium and Oxygen Atoms in Free Clustersof Cerium Oxide by X-ray Absorption Spectroscopy
Top. Catal. 61, 119 (2018).
Former 2C
Minohara, M., Hikita, Y., Bell, C., Inoue, H., Hosoda, M.,
Sato, H.K., Kumigashira, H., Oshima, M., Ikenaga, E.,
Hwang, H.Y.
Dielectric collapse at the LaAlO3/ SrTiO3 (001) heterointerface
under applied electric field
Sci. Rep. 7, 9516 (2017).

Tezuka, Y., Nakajima, N., Adachi, J., Morimoto, O.,
Sato, H., Uozumi, T.
Polarization-Dependent Ti 2p-Resonant X-ray Raman
Scattering from Ti2O3
J. Phys. Soc. Jpn. 86, 124713-1 (2017).
aA
Kobayashi, M., Yoshimatsu, K., Mitsuhashi, T.,
Kitamura, M., Sakai, E., Yukawa, R., Minohara, M.,
Fujimori, A., Horiba, K., Kumigashira, H.
Emergence of Quantum Critical Behavior in Metallic QuantumWell States of Strongly Correlated Oxides
Sci. Rep. 7, 16621 (2017).
3A
Sudayama, T., Nakao, H., Yamasaki, Y., Murakami, Y.,
Asai, S., Okazaki, R., Yasui, Y., Terasaki, I.
Spin State of Co3+ in LaCo1-xRhxO3 Studied Using X-ray
Absorption Spectroscopy
J. Phys. Soc. Jpn. 86, 094701 (2017).
aA
Suturin, S.M., Fedorov, V.V., Korovin, A.M., Sokolov, N.S.,
Nashchekin, A.V., Tabuchi, M.
Epitaxial Ni nanoparticles on CaF2 (001), (110) and (111)
surfaces studied by three-dimensional RHEED, GIXD and
GISAXS reciprocal-space mapping techniques
J. Appl. Cryst. 50, 830 (2017).
aA
Krichevtsov, B.B., Gastev, S.V., Suturin, S.M., Fedorov,
V.V., Korovin, A.M., Bursian, V.E., Banshchikov, A.G.,
Volkov, M.P., Tabuchi, M., Sokolov, N.S.
Magnetization reversal in YIG/GGG(111) nanoheterostructures
grown by laser molecular beam epitaxy
Sci. Technol. of Adv. Mater. 18, 351 (2017).
aA
Anada, M., Nakanishi-Ohno, Y., Okada, M., Kimura, T.,
Wakabayashi, Y.
Bayesian inference of metal oxide ultrathin film structure basedon crystal truncation rod measurements
J. Appl. Cryst. 50, 1611 (2017).
aA
Kobayashi, S., Aoki, M., Wakisaka, M., Kawamoto, T.,
Shirasaka, R., Suda, K., Tryk, D.A., Inukai, J., Kondo, T.,
Uchida, H.
Atomically Flat Pt Skin and Striking Enrichment of Co in
Underlying Alloy at Pt3Co(111) Single Crystal with
Unprecedented Activity for the Oxygen Reduction Reaction
ACS OMEGA 3, 154 (2018).
aA
Matsumura, T., Yamamoto, T., Tanida, H., Sera, M.
Temperature-Dependent Cycloidal Magnetic Structure in
GdRu2Al10 Studied by Resonant X-ray Diffraction
J. Phys. Soc. Jpn. 86, 094709 (2017).
aA
Kaveev, A. K., Bursian, V. E., Krichevtsov, B. B.,
Mashkov, K. V., Suturin, S. M., Volkov, M. P., Tabuchi, M.,
Sokolov, N. S.
Laser MBE-grown CoFeB epitaxial layers on MgO: Surface
morphology, crystal structure, and magnetic properties
Phys. Rev. Materials 2, 014411 (2018).
3B
Sugizaki, Y., Motoyama, H., Edamoto, K., Ozawa, K.
Electronic structure of Fe2P(10-10) studied by soft X-ray
photoelectron spectroscopy and X-ray absorption spectroscopy
Surf. Sci. 664, 50 (2017).
aA
Mizushima, H., Koike, H., Kuroda, K., Ishida, Y.,
Nakayama, M., Mase, K., Kondo, T., Shin, S., Kanai, K.
Effect of physisorption of inert organic molecules on Au(111)
surface electronic states
Phys. Chem. Chem. Phys. 19, 18646 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
3C
Yao, Y., Ishikawa, Y., Sugawara, Y., Takahashi, Y., Hirano, K.
Elementary screw and mixed-type dislocations in 4H-SiC
characterized by X-ray topography taken with six equivalent
11-28 G-vectors and a comparison to etch pit evaluation
Mater. Sci. Forum 897, 185, (2017).
aA
Waseda, A., Fujimoto, H., Zhang, X.W., Kuramoto, N.,
Fujii, K.
Uniformity Evaluation of Lattice Spacing of 28Si Single
CrystalsIEEE Trans. Instrum. Meas. 66, 1304 (2017).
aA
Bartl, G., Becker, P., Beckhoff, B., Bettin, H., Beyer, E.,
Borys, M., Busch, I., Cibik, L., D'Agostino, G., Darlatt, E.,
Di Luzio, M., Fujii, K., Fujimoto, H., Fujita, K., Kolbe, M.,
Krumrey, M., Kuramoto, N., Massa, E., Mecke, M.,
Mizushima, S., Muller M., Narukawa T., Nicolaus A.,
Pramann A., Rauch D., Rienitz O., Sasso C. P., Stopic A.,
Stosch R., Waseda A., Wundrack S., Zhang L., Zhang X.W.
A new 28Si single crystal: counting the atoms for the new
kilogram definition
Metrologia 54, 693 (2017).
aA
Kibalin, I.A., Yan, Z., Voufack, A.B., Gueddida, S., Gillon, B.,
Gukasov, A., Porcher, F., Bataille, A.M., Morini, F.,
Claiser, N., Souhassou, M., Lecomte, C., Gillet, J.-M., Ito, M.,
Suzuki, K., Sakurai, H., Sakurai, Y., Hoffmann, C.M.,
Wang, X.P.
Spin density in YTiO3: I. Joint refinement of polarized neutron
diffraction and magnetic x-ray diffraction data leading to
insights into orbital ordering
Phys. Rev. B 96, 054426 (2017).
4A
Iida, A.
Elemental and chemical state depth analysis by combined useof a polycapillary and a thin wire in a synchrotron X-ray
microprobe
X-Ray Spectrom. 46, 225 (2017).
aA
Chandani, Perera, A.D.L., Fukuda, A., Vij, J.K., Takanishi, Y.
Ferrielectric six-layer q = 1/3 (q = 2/3) and several electricfield-induced subphases in AS657 studied by complementary
methods, electric-field-induced birefringence and microbeam
resonant X-ray scattering
Liq. Cryst. 44, 1787 (2017).
aA
Feng, Z., Chandani Perera, A.D.L., Fukuda, A., Vij, J.K.,
Ishikawa, K., Iida, A., Takanishi, Y.
Definite existence of subphases with eight- and ten-layer unit
cells as studied by complementary methods, electric-fieldinduced birefringence and microbeam resonant x-ray scattering
Phys.Rev. E 96, 012701 (2017).
aA
Yokoi, N., Takenouchi, N., Mikouchi, T.
Iron Valence States of Plagioclase in Some Lunar Meteorites
LPI Contrib. 2083, 2227 (2018).
aA
Mikouchi, T., Takenouchi, A., Zolensky, M. E.,
Hoffmann, V. H.
Almahata Sitta MS-MU-011 and MS-MU-012: Formation
Conditions of Two Unusual Rocks from the Ureilite Parent
Body
LPI Contrib. 2083, 2383 (2018).
aA
Arai, T., Komatsu, M., Takenouchi, A., Mikouchi, T.,
Tomeoka, K.
Na Variation and Redox State of Plagioclase in CK4Chondrites: Possible Record of Thermal Metamorphism
LPI Contrib. 2083, 2995 (2018).

Takenouchi, A., Mikouchi, T., Kogure, T.
Mineralogical study of brown olivine in Northwest Africa 1950
shergottite and implications for the formation mechanism ofiron nanoparticles
Meteorit. Planet. Sci. 52, 2491 (2017).
4B2
Fujimoto, A., Yashima, M., Fujii, K., Hester, J.R.
New Oxide-Ion Conductor SrYbInO4 with Partially CationDisordered CaFe2O4-Type Structure
J. Phys. Chem. C 121, 21272 (2017).
aA
Hibino, K., Yashima, M., Oshima, T., Fujii, K., Maeda, K.
Crystal Structure, Electron Density and Characterization of
Visible-Light Responsive Photocatalysts,(BaTaO2N)1-x(SrWO2N)x Solid Solutions
Dalton Trans. 46, 14947 (2017).
aA
Lu, J., Nishimura, S.-I., Yamada, A.
Polyanionic Solid-Solution Cathodes for Rechargeable
Batteries
Chem. Mater. 29, 3597 (2017).
aA
Lu, J., Nishimura, S.-I., Yamada, A.
A Fe-rich sodium iron orthophosphate as cathode material forrechargeable batteries
Electrochem. Commun. 79, 51 (2017).
aA
Nishimura, S., Tanibata, N., Hayashi, A., Tatsumisago, M.,
Yamada, A.
The crystal structure and sodium disorder of high-temperaturepolymorph β-Na3PS4
J. Mater. Chem. A 5, 25025 (2017).
aA
Kawai, K., Zhao, W., Nishimura, S., Yamada, A.
High-Voltage Cr4+/Cr3+ Redox Couple in Polyanion
Compounds
ACS Appl. Energy Mater. 1, 928 (2018).
aA
Panigrahi, A., Nishimura, S.-I., Shimada, T., Watanabe, E.,
Zhao, W., Oyama, G., Yamada, A.
Sodium Iron(II) Pyrosilicate Na2Fe2Si2O7: A Potential CathodeMaterial in the Na2O-FeO-SiO2 System
Chem. Mater. 29, 4361 (2017).
aA
Kagomiya, I., Hirota, Y., Kakimoto, K.-I., Fujii, K.,
Shiraiwa, M., Yashima, M., Fuwa, A., Nakamura, S.
Weak ferromagnetic ordering in brownmillerite Ca 2Fe2O5 andits effect on electric field gradients
Phys. Chem. Chem. Phys. 19, 31194 (2017).
aA
Shiraiwa, M., Fujii, K., Esaki, Y., Kim, S.J., Lee, S.,
Yashima, M.
Crystal Structure and Oxide-Ion Conductivity of
Ba1+xNd1-xInO4-x/2
J. Electrochem. Soc. 164, F1392 (2017).
aA
Fujii, K., Shimada, K., Yashima, M.
Crystal-structure and electron-density analyses of theperovskite-type oxynitrides BaNbO2N and SrNbO2N throughsynchrotron X-ray powder diffraction
J. Ceram. Soc. Jpn. 125, 808 (2017).
aA
Uehara, M., Kobayashi, K., Yamamoto, H., Nakata, A.,
Wakiya, K., Umehara, I., Gouchi, J., Uwatoko, Y.
Synchrotron X-ray Diffraction and High-Pressure Electrical
Resistivity Studies for High-Tc Candidate Nd3.5Sm0.5Ni3O8
J. Phys. Soc. Jpn. 86, 114605 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
4C
Sudayama, T., Nakao, H., Yamasaki, Y., Murakami, Y.,
Asai, S., Okazaki, R., Yasui, Y., Terasaki, I.
Spin State of Co3+ in LaCo1-xRhxO3 Studied Using X-ray
Absorption Spectroscopy
J. Phys. Soc. Jpn. 86, 094701 (2017).
aA
Ishibashi, H., Shimono, S., Tomiyasu, K., Lee, S.,
Kawaguchi, S., Iwane, H., Nakao, H., Torii, S., Kamiyama, T.,
Kubota, Y.
Small crystal distortion and long-range antiferro-orbital
ordering in the spinel oxide CoV2O4
Phys. Rev. B 96, 144424 (2017).
aA
Nakamura, M., Banzai, T., Maehata, Y., Endo, O., Tajiri, H.,
Sakata, O., Hoshi, N.
Real-time observation of interfacial ions during
electrocrystallization
Sci. Rep. 7, 914 (2017).
aA
Yamamoto, K., Hirata, Y., Horio, M., Yokoyama, Y.,
Takubo, K., Minohara, M., Kumigashira, H., Yamasaki, Y.,
Nakao, H., Murakami, Y., Fujimori, A., Wadati, H.
Thickness dependence and dimensionality effects on charge
and magnetic orderings in La1/3Sr2/3FeO3 thin films
Phys. Rev. B 97, 075134 (2018).
aA
Kobayashi, S., Aoki, M., Wakisaka, M., Kawamoto, T.,
Shirasaka, R., Suda, K., Tryk, D.A., Inukai, J., Kondo, T.,
Uchida, H.
Atomically Flat Pt Skin and Striking Enrichment of Co in
Underlying Alloy at Pt3Co(111) Single Crystal with
Unprecedented Activity for the Oxygen Reduction Reaction
ACS OMEGA 3, 154 (2018).
5A
Islam, M.M., Kuroda, Y.
A hetero-micro-seeding strategy for readily crystallizing closely
related protein variants
Biochem. Biophys. Res. Commun. 493, 504 (2017).
aA
Kawakami, E., Adachi, N., Senda, T., Horikoshi, M.
Leading role of TBP in the Establishment of Complexity inEukaryotic Transcription Initiation Systems
Cell Rep. 21, 3941 (2017).
aA
Fushinobu, S.
Crystal structures of carbohydrate-active enzymes withpotential for practical oligosaccharide synthesis
Int. J. Microgravity Sci. Appl. 34, 340109 (2017).
aA
Shinohara, F., Kurisu, G., Hanke, G., Bowsher, C., Hase, T.,
Kimata-Ariga, Y.
Structural basis for the isotype-specific interactions offerredoxin and ferredoxin: NADP+ oxidoreductase: an
evolutionary switch between photosynthetic and heterotrophic
assimilation
Photosynth. Res. 134, 281 (2017).
aA
Komiya, D., Hori, A., Ishida, T., Igarashi, K., Samejima, M.,
Koseki, T., Fushinobu, S.
Crystal Structure and Substrate Specificity Modification ofAcetyl Xylan Esterase from Aspergillus luchuensis
Appl. Environ. Microbiol. 83, e01251 (2017).
aA
Shi, X., Miyakawa, T., Nakamura, A., Hou, F., Hibi, M.,
Ogawa, J., Kwon, Y., Tanokura, M.
Engineering a short-chain dehydrogenase/reductase for thestereoselective production of (2S,3R,4S)-4-hydroxyisoleucine
with three asymmetric centersSci. Rep. 7, 13703 (2017).

Kezuka, Y., Ishida, T., Yoshida, Y., Nonaka, T.
Structural insights into the catalytic mechanism of cysteine(hydroxyl) lyase from the hydrogen sulfide-producing oral
pathogen, Fusobacterium nucleatum
Biochem. J. 475, 733 (2018).
aA
Roppongi, S., Suzuki, Y., Tateoka, C., Fujimoto, M.,
Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y.,
Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Crystal structures of a bacterial dipeptidyl peptidase IV reveal anovel substrate recognition mechanism distinct from that of
mammalian orthologues
Sci. Rep. 8, 2714 (2018).
aA
Sato, M., Liebschner, D., Yamada, Y., Matsugaki, N.,
Arakawa, T., Wills, S.S., Hattie, M., Stubbs, K.A., Ito, T.,
Senda, T., Ashida, H., Fushinobu, S.
The first crystal structure of a family 129 glycoside hydrolasefrom a probiotic bacterium reveals critical residues and metal
cofactors
J. Biol. Chem. 292, 12126 (2017).
aA
Tomita, T., Kim, S.-Y., Teramoto, K., Meguro, A., Ozaki, T.,
Yoshida, A., Motoyoshi, Y., Mori, N., Ishigami, K.,
Watanabe, H., Nishiyama, M., Kuzuyama, T.
Structural insight into the CotB2-catalyzed cyclization ofGeranylgeranyl Diphosphate to the Diterpene Cyclooctat-9-en7-ol
ACS Chem. Biol. 12, 1621 (2017).
aA
Tomita, T., Yin, L., Nakamura, S., Kosono, S., Kuzuyama, T.,
Nishiyama, M.
Crystal structure of the 2-iminoglutarate-bound complex ofglutamate dehydrogenase from Corynebacterium glutamicum.
FEBS Lett. 591, 1611 (2017).
aA
Fujita, S., Cho, S.-H., Yoshida, A., Hasebe, F., Tomita, T.,
Kuzuyama, T., Nishiyama, M.
Crystal structure of LysK, an enzyme catalyzing the last step oflysine biosynthesis in Thermus thermophilus, in complex withlysine: Insight into the mechanism for recognition of the aminogroup carrier protein, LysW
Biochem. Biophys. Res. Commun. 491, 409 (2017).
aA
Yamada, C., Gotoh, A., Sakanaka, M., Hattie, M.,
Stubbs, K.A., Katayama-Ikegami, A., Hirose, J., Kurihara, S.,
Arakawa, T., Kitaoka, M., Okuda, S., Katayama, T.,
Fushinobu, S.
Molecular insight into evolution of symbiosis between breastfed infants and a member of the human gut microbiome
Bifidobacterium longum
Cell Chem. Biol. 24, 515 (2017).
aA
Miyanaga, A., Takayanagi, R., Furuya, T., Kawamata, A.,
Itagaki, T., Iwabuchi, Y., Kanoh, N., Kudo, F., Eguchi, T.
Substrate Recognition by a Dual-Function P450
Monooxygenase GfsF Involved in FD-891 Biosynthesis.
ChemBioChem 18, 2179 (2017).
aA
Miyanaga, A.
Structure and function of polyketide biosynthetic enzymes:
various strategies for production of structurally diverse
polyketides
Biosci. Biotechnol. Biochem. 81, 2227 (2017).
aaA
Kanazawa, H., Kondo, J.
Crystal structure of a novel RNA motif that allows for precise
positioning of a single metal ion
J. Inorg. Biochem. 176, 140 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
Kanazawa, H., Baba, F., Koganei, M., Kondo, J.
A structural basis for the antibiotic resistance conferred by an
N1-methylation of A1408 in 16S rRNA
Nucl. Acids Res. 45, 12529 (2017).
aA
Dirr, L., El-Deeb, I.M., Chavas, L.M.G., Guillon, P.,
Itzstein, M.V.
The impact of the butterfly effect on human parainfluenza virus
haemagglutinin-neuraminidase inhibitor design
Sci. Rep. 7, 4507 (2017).
aA
Yasutake, Y., Kusada, H., Ebuchi, T., Hanada, S.,
Kamagata, Y., Tamura, T., Kimura, N.
Bifunctional quorum-quenching and antibiotic-acylase MacQ
forms a 170-kDa capsule-shaped molecule containing spacer
polypeptides
Sci. Rep. 7, 8946 (2017).
aA
Mizobuchi, T., Nonaka, R., Yoshimura, M., Abe, K.,
Takahashi, S., Kera, Y., Goto, M.
Crystal structure of a pyridoxal 5'-phosphate-dependent
aspartate racemase derived from the bivalve mollusc Scapharcabroughtonii
Acta Crystallogr. F-Struct. Biol. Commun. 73, 651 (2017).
aA
Im, D., Matsui, D., Arakawa, T., Isobe, K., Asano, Y.
Fushinobu S.
Ligand complex structures of L-amino acidoxidase/monooxygenase from Pseudomonas sp. AIU 813 andits conformational change
FEBS Open Bio. 8, 314 (2018).
aA
Hiromoto, T., Meilleur, F., Shimizu, R., Shibazaki, C.,
Adachi, M., Tamada, T., Kuroki, R.
Neutron structure of the T26H mutant of T4 phage lysozyme
provides insight into the catalytic activity of the mutant enzyme
and how it differs from that of wild typeProtein Sci. 26, 1953 (2017).
aA
Tachioka, M., Nakamura, A., Ishida, T., Igarashi, K.,
Samejima, M.
Crystal structure of a family 6 cellobiohydrolase from thebasidiomycete Phanerochaete chrysosporium
Acta Crystallogr. F-Struct. Biol. Commun. 73, 398 (2017).
aA
Maekawa, K., Adachi, M., Matsuzawa, Y., Zhang, Q.,
Kuroki, R., Saito, Y., Shah, M.B.
Structural Basis of Single-Nucleotide Polymorphisms in
Cytochrome P450 2C9
Biochemistry 56, 5476 (2017).
aA
Qin, H.-M., Miyakawa, T., Inoue, A., Nakamura, A.,
Nishiyama, R., Ojima, T., Tanokura, M.
Laminarinase from Flavobacterium sp. reveals the structural
basis of thermostability and substrate specificity
Sci. Rep. 7, 11425 (2017).
aA
Kojima, H., Itoh, T., Yamamoto, K.
On-site reaction for PPARg modification using a specificbifunctional ligand
Bioorg. Med. Chem. 25, 6492 (2017).
aA
Nakamura, F., Kudo, N., Tomachi, Y., Nakata, A.,
Takemoto, M., Ito, A., Tabei, H., Arai, D., Voogd, N. de,
Yoshida, M., Nakao, Y., Fusetani, N.
Halistanol sulfates I and J, new SIRT1-3 inhibitory steroid
sulfates from a marine sponge of the genus Halichondria
J. Antibiot. 71, 273 (2018).
aA

Kondo, J., Tada, Y., Dairaku, T., Hattori, Y., Saneyoshi, H.,
Ono, A., Tanaka, Y.
A metallo-DNA nanowire with uninterrupted one-dimensional
silver array
Nat. Chem. 9, 956 (2017).
aA
Ogawa, T., Saijo, S., Shimizu, N., Jiang, X., Hirokawa, N.
Mechanism of Catalytic Microtubule Depolymerization via
KIF2-Tubulin Transitional Conformation
Cell Rep. 20, 2626 (2017).
aA
Ou, X., Guo, J., Wang, L., Yang, H., Liu, X., Sun, J., Liu, Z.
Ion- and water-binding sites inside an occluded hourglass poreof a trimeric intracellular cation (TRIC) channel
BMC Struct. Biol. 15, 31 (2017).
aA
Jang, J.Y., Koh, M., Bae, H., An, D.R., Im, H.N., Kim, H.S.,
Yoon, J.Y., Yoon, H.-J., Han, B.W., Park, S.B., Suh, S.W.
Structural basis for differential activities of enantiomeric
PPARγ agonists: Binding of S35 to the alternate site
Biochim. Biophys. Acta - Proteins and Proteomics 1865, 674(2017).
aA
Cie´slak, J., Miyanaga, A., Takaku, R., Takaishi, M.,
Amagai, K., Kudo, F., Eguchi, T.
Biochemical characterization and structural insight into
aliphatic β-amino acid adenylation enzymes IdnL1 and CmiS6.
Proteins: Struct. Funct. Bioinf. 85, 1238 (2017).
aA
Chisuga, T., Miyanaga, A., Kudo, F., Eguchi, T.
Structural analysis of the dual-function thioesterase SAV606
unravels the mechanism of Michael addition of glycine to anα,β-unsaturated thioester.
J. Biol. Chem. 292, 10926 (2017).
aA
Oda, T., Hirabayashi, H., Shikauchi, G., Takamura, R.,
Hiraga, K., Minami, H., Hashimoto, H., Yamamoto, M.,
Wakabayashi, K., Shimizu, T., Sato, M.
Structural basis of autoinhibition and activation of the DNAtargeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem. 292, 15445 (2017).
aA
Cho, S.-H., Kim, S.-Y., Tomita, T., Shiraishi, T., Park, J.-S.,
Sato, S., Kudo, F., Eguchi, T., Funa, N., Nishiyama, M.,
Kuzuyama, T.
Fosfomycin Biosynthesis via Transient Cytidylylation of 2Hydroxyethylphosphonate by the Bifunctional Fom1 Enzyme
ACS Chem. Biol. 12, 2209 (2017).
aA
Samori, P.Y., Makabe, K., Ohya, N., Hatano, B., Murakami, S.,
Kijima, T.
Role of Cys73 in the thermostability of farnesyl diphosphatesynthase from Geobacillus stearothermophilus
3 Biotech 7, 236 (2017).
aA
Nagae, M., Liebschner, D., Yamada, Y.,
Morita-Matsumoto, K., Matsugaki, N., Senda, T., Fujita, M.,
Kinoshita, T., Yamaguchi, Y.
Crystallographic analysis of murine p24γ2 Golgi dynamics
domainProteins: Struct. Funct. Bioinf. 85, 764 (2017).
aA
Mori, T., Iwabuchi, T., Hoshino, S., Wang, H., Matsuda, Y.,
Abe, I.
Molecular basis for the unusual ring reconstruction in fungal
meroterpenoid biogenesis
Nat. Chem. Biol. 13, 1066 (2017).
aA
Shimasaki, T., Yoshida, H., Kamitori, S., Sode, K.
X-ray structures of fructosyl peptide oxidases revealing
residues responsible for gating oxygen access in the oxidative
half reaction
Sci. Rep. 7, 2790 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
Nagata, R., Fujihashi, M., Kawamura, H., Sato, T., Fujita, T.,
Atomi, H., Miki, K.
Structural Study on the Reaction Mechanism of a Free Serine
Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol. 12, 1514 (2017).
aA
Kato, A., Yamao, M., Hashihara, Y., Ishida, H., Itoh, T.,
Yamamoto, K.
Vitamin D Analogues with a p-Hydroxyphenyl Group at the
C25 Position: Crystal Structure of Vitamin D Receptor LigandBinding Domain Complexed with the Ligand Explains the
Mechanism Underlying Full Antagonistic Action
J. Med. Chem. 60, 8394 (2017).
aA
Sengoku, T., Suzuki, T., Dohmae, N., Watanabe, C.,
Honma, T., Hikida, Y., Yamaguchi, Y., Takahashi, H.,
Yokoyama, S., Yanagisawa, T.
Structural basis of protein arginine rhamnosylation byglycosyltransferase EarP
Nat. Chem. Biol. 14, 368 (2018).
aA
Chen, M., Kato, K., Kubo, Y., Tanaka, Y., Liu, Y., Long, F.,
Whitman, W.B., Lill, P., Gatsogiannis, C., Raunser, S.,
Shimizu, N., Shinoda, A., Nakamura, A., Tanaka, I., Yao, M.
Structural basis for the tRNA-dependent cysteine biosynthesis
Nat. Commun. 8, 1521 (2017).
aA
Matsuzawa, T., Kaneko, S., Kishine, N., Fujimoto, Z., Yaoi, K.
Crystal structure of metagenomic β-xylosidase/ α-Larabinofuranosidase activated by calcium.
J. Biochem. 162, 173 (2017).
aA
Tomita, T., Kobayashi, M., Karita, Y., Yasuno, Y., Shinada, T.,
Nishiyama, M., Kuzuyama, T.
Structure and Mechanism of the Monoterpene Cyclolavandulyl
Diphosphate Synthase that Catalyzes Consecutive
Condensation and Cyclization
Angew. Chem. Int. Ed. 56, 14913 (2017).
aA
Kiyoshi, M., Caaveiro, J.M.M, Tada, M., Tamura, H.,
Tanaka, T., Terao, Y., Morante, K., Harazono, A., Hashii, N.,
Shibata, H., Kuroda, D., Nagatoishi, S., Oe, S., Ide, T.,
Tsumoto, K., Ishii-Watabe, A.
Assessing the Heterogeneity of the Fc-Glycan of a Therapeutic
Antibody Using an engineered FcReceptor IIIa-Immobilized
ColumnSci. Rep. 8, 3955 (2018).
aA
Tamai, E., Sekiya, H., Maki, J., Nariya, H., Yoshida, H.,
Kamitori, S.
X-ray structure of Clostridium perfringens sortase B cysteinetranspeptidase
Biochem. Biophys. Res. Commun. 493, 1267 (2017).
aA
Ishiguro, R., Tanaka, N., Abe, K., Nakajima, M., Maeda, T.,
Miyanaga, A., Takahashi, Y., Sugimoto, N., Nakai, H.,
Taguchi, H.
Function and structure relationships of aβ-1,2-glucooligosaccharide-degrading β-glucosidase
FEBS Lett. 591, 3926 (2017).
aA
Abe, K., Nakajima, M., Yamashita, T., Matsunaga, H.,
Kamisuki, S., Nihira, T., Takahashi, Y., Sugimoto, N.,
Miyanaga, A., Nakai, H., Arakawa, T., Fushinobu, S.,
Taguchi, H.
Biochemical and structural analyses of a bacterial
endo-β-1,2-glucanase reveal a new glycoside hydrolase family
J. Biol. Chem. 292, 7487 (2017).
aA

Yoon, J., Kim, S.J., An, S., Cho, S., Leitner, A., Jung, T.,
Aebersold, R., Hebert, H., Cho, U.-S., Song, J.-J.
Integrative Structural Investigation on the Architecture of
Human Importin4_Histone H3/H4_Asf1a Complex and Its
Histone H3 Tail Binding
J. Mol. Biol. 430, 822 (2018).
aA
Kim, J.Y., Kim, H.J., Heo, N.H., Seff, K.
Progress toward Zeolite-Based Self-Luminous Sensors forRadioactive Isotopes such as (TI)-T-201 and Cs-137: Structuresand Luminescence of Hf,CI,TI-A and Hf,CI,Cs,Na-A
J. Phys. Chem. C 121, 19619 (2017).
aA
Lim, H.S., Heo, N.H., Seff, K.
Preparation, crystal structure, and luminescence of zeolite
Ta,Cl,Cs,Na-A containing a cubic Cs11TaCl610+ continuum
J. Porous Mater. 24, 1117 (2017).
aA
Lee, G.M., Heo, N.H., Seff, K.
Exchanging noble and seminoble cations into zeolites byoxygen vacancy ion exchange (OVIE)Micropor. Mesopor. Mater. 244, 47 (2017).
aA
Hayashi, J., Mutaguchi, Y., Minemura, Y., Nakagawa, N.,
Yoneda, K., Ohmori, T., Ohshima, T., Sakuraba, H.
Crystal structure of the novel amino-acid racemase isoleucine
2-epimerase from Lactobacillus buchneri
Acta Crystallogr. D-Struct. Biol. 73, 428 (2017).
aA
Dong, H., Zonta, F., Wang, S., Song, K., He, X., He, M.,
Nie, Y., Li, S.
Structure and Molecular Dynamics Simulations of Protein
Tyrosine Phosphatase Non-Receptor 12 Provide Insights into
the Catalytic Mechanism of the Enzyme
Int. J. Mol. Sci. 19, 60 (2018).
aA
Viborg, A.H., Katayama, T., Arakawa, X.T., Hachem, X.M.A.,
Leggio, X.L.L., Kitaoka, X.M., Svensson, B., Fushinobu, X.S.
Discovery of -L-arabinopyranosidases from human gut
microbiome expands the diversity within glycoside hydrolase
family 42
J. Biol. Chem. 292, 21092 (2017).
aA
Diebold-Durand, M.-L., Lee, H., Ruiz Avila, L.B., Noh, H.,
Shin, H.-C., Im, H., Bock, F.P., Bürmann, F., Durand, A.,
Basfeld, A., Ham, S., Basquin, J., Oh, B.-H., Gruber, S.
Structure of Full-Length SMC and Rearrangements Required
for Chromosome Organization
Mol. Cell 67, 334 (2017).
aA
Yan, Q., Jiang, D., Qian, L., Zhang, Q., Zhang, W., Zhou, W.,
Mi, K., Guddat, L., Yang, H., Rao, Z.
Structural Insight into the Activation of PknI Kinase fromM. tuberculosis via Dimerization of the Extracellular Sensor
DomainStructure 25, 1286 (2017).
aA
An, J.Y., Sharif, H., Kang, G.B., Park, K.J., Lee, J.G., Lee, S.,
Jin, M.S., Song, J.J., Wang, J., Eom, S.H.
Structural insights into the oligomerization of FtsH periplasmic
domain from Thermotoga maritima
Biochem. Biophys. Res. Commun. 495, 1201 (2018).
aA
Sato, D., Shiba, T., Karaki, T., Yamagata, W., Nozaki, T.,
Nakazawa, T., Harada, S.
X-Ray snapshots of a pyridoxal enzyme: a catalytic mechanism
involving concerted [1,5]-hydrogen sigmatropy in methionine
-lyaseSci. Rep. 7, 4874 (2017).
aaA

Photon Factory Activity Report 2017 #35 (2018) B
Jang, J.Y., Bae, H., Lee, Y.J., Choi, Y.I., Kim, H.-J., Park, S.B.,
Suh, S.W., Kim, S.W., Han, B.W.
Structural Basis for the Enhanced Anti-Diabetic Efficacy ofLobeglitazone on PPAR 
Sci. Rep. 8, 31 (2018).
aA
Hayashi, T., Senda, M., Suzuki, N., Nishikawa, H., Ben, C.,
Tang, C., Nagase, L., Inoue, K., Senda, T., Hatakeyama, M.
Differential Mechanisms for SHP2 Binding and Activation Are
Exploited by Geographically Distinct Helicobacter pylori CagA
Oncoproteins
Cell Rep. 20, 2876 (2017).
aA
Bahrudin, U., Unno, M., Nishio, K., Kita, A., Li, P., Kato, M.,
Inoue, M., Tsujitani, S., Murakami, T., Sugiyama, R., Saeki, Y.,
Obara, Y., Tanaka, K., Yamaguchi, H., Sakane, I., Kawata, Y.,
Itoh, T., Ninomiya, H., Hisatome, I., Morimoto, Y.
Inhibitory effects of local anesthetics on the proteasome andtheir biological actions
Sci. Rep. 7, 5079 (2017).
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Takahashi, H., Jojiki, K.
Water isotope effect on the lipidic cubic phase: Heavy
water-Induced interfacial area reduction ofmonoolein-Water system
Chem. Phys. Lipids 208, 52 (2017).
aA
Hishida, M.
n-アルカン添加によるリン脂質二重膜の硬化とベシクルの破裂
C&I Commun. 42, 30 (2017).
aA
Takagi, H., Takasaki, T., Yamamoto, K.
Phase Diagram for Block Copolymer and Homopolymer
Blends: The Phase Boundary of the Ordered Bicontinuous
Double Diamond Network Structure
J. Nanosci. Nanotechnol. 17, 9009 (2017).
aA
Aizawa, H., Ichikawa, S., Kotake-Nara, E., Nagao, A.
Effects of a lysophosphatidylcholine and a phosphatidylcholine
on the morphology of taurocholic acid-based mixed micelles as
determined by small-angle X-ray scattering
J. Disper. Sci. Technol. 39, 1003 (2018).
aA
Kutsumizu, S., Yamada, Y., Sugimoto, T., Yamada, N.,
Udagawa, T., Miwa, Y.
Symmetric exploitation of thermotropic bicontinuous cubic
phase families from 1,2-bis(aryloyl)hydrazine-based molecules
Phys. Chem. Chem. Phys. 20, 7953 (2018).
aA
Ryoki, A., Kim, DC., Kitamura, S., Terao, K.
Linear and cyclic amylose derivatives having brush like sidegroups in solution: Amylose tris(n-octadecylcarbamate)s
Polymer 137, 13 (2018).
aA
Hishida, M., Nomura, Y., Akiyama, R., Yamamura, Y.,
Saito, K.
Electrostatic double-layer interaction between stacked charged
bilayers
Phys. Rev. E 96, 040601(R) (2017).
aA
Saito, K., Hishida, M., Koike, K., Nagatomo, S., Yamamura, Y.
X-ray study of molecular association in alcohols having bulky
substituentsChem. Phys. Lett. 673, 74 (2017).
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Tokita, M.
Long period structures in polymer liquid crystals investigatedusing synchrotron radiation X-ray scattering
Kobunshi 66, 413 (2017).
aA

Bay´es-Garc´ia, L., Calvet, T., Cuevas-Diarte, M.A., Ueno, S.
From Trioleoyl glycerol to extra virgin olive oil throughmulticomponent triacylglycerol mixtures: Crystallization andpolymorphic transformation examined with differential
scanning calorimetry and X-ray diffration techniques
Food Res. Int. 99, 476 (2017).
aA
Yokoyama, Y., Tanaka, H., Yano, S., Takahashi, H.,
Kikukawa, T., Sonoyama, M., Takenaka, K.
Spontaneous stacking of purple membranes during
immobilization with physical cross-linked poly(vinyl alcohol)hydrogel with retaining native-like functionality ofbacteriorhodopsin
J. Appl. Phys. 121, 204701 (2017).
aA
Ogawa, T., Saijo, S., Shimizu, N., Jiang, X., Hirokawa, N.
Mechanism of Catalytic Microtubule Depolymerization via
KIF2-Tubulin Transitional Conformation
Cell Rep. 20, 2626 (2017).
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Kobayashi, N., Arai, R.
Design and construction of self-assembling supramolecular
protein complexes using artificial and fusion proteins as
nanoscale building blocks
Curr. Opin. Biotech. 46, 57 (2017).
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Nyuui, T., Matsuba, G., Sato, S., Nagai, K., Fujimori, A.
Correlation between gas transport properties and themorphology/dynamics of crystalline fluorinated copolymer
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Matsuba, G., Kobayashi, T., Chonan, Y.
Detailed Analysis of Aliphatic Polyurea Crystals
J. Fiber Sci. Technol. 73, 122 (2017).
aA
Asai, Y., Suzuki, J., Aoyama, Y., Nishioka, H., Takano, A.,
Matsushita, Y.
Tricontinuous Double Diamond Network Structure from Binary
Blends of ABC Triblock Terpolymers
Macromolecules 50, 5402 (2017).
aA
Ishibashi, C., Hondoh, H., Ueno, S.
Epitaxial Growth of Fat Crystals on Emulsifier Crystals withDifferent Fatty Acid Moieties
Cryst. Growth Des. 17, 6363 (2017).
aA
Marubayashi, H., Ushio, T., Nojima, S.
Crystallization of polyesters composed of isohexides andaliphatic dicarboxylic acids: Effects of isohexide
stereoisomerism and dicarboxylic acid chain length
Polym. Degrad. Stabil. 146, 174 (2017).
aA
Miwa, Y., Kurachi. J., Kohbara, Y., Kutsumizu S.
Dynamic ionic crosslinks enable high strength andultrastretchability in a single elastomer
Commun. Chem. 1, 5 (2018).
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Okuda, H., Yamasaki, M., Kawamura, Y.
Transition to long-period stacking ordered structures in
Mg85Gd9Zn6 alloys from amorphous ribbons examined bysymchrotron radiation scattering; Comparison with Mg85Y9Zn6
alloysScr. Mater. 139, 26 (2017).
aA
Takagi, H., Hashimoto, R., Igarashi, N., Kishimoto, S.,
Yamamoto, K.
Frank-Kasper σ phase in polybutadiene-poly(ε-caprolactone)
diblock copolymer/polybutadiene blends
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aAPhoton Factory Activity Report 2017 #35 (2018) B
Takagi, H., Hashimoto, R., Igarashi, N., Kishimoto, S.,
Yamamoto, K.
Synchrotron SAXS Studies on Lattice Structure of Spherical
Micelles in Binary Mixtures of Block Copolymers andHomopolymers
J. Fiber Sci. Technol. 74, 10 (2018).
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Yamanaka, R., Shimizu, N., Igarashi, N., Takagi, H.,
Sakurai, S.
Orienting cylindrical microdomains in polystyrene-bpoly(ethylene-co-butylene)-b-polystyrene triblock
copolymer/diluent sheet by application of temperature gradient
Polimery 62, 812 (2017).
aA
Tomita, S., Wataoka, I., Igarashi, N., Shimizu, N., Takagi, H.,
Sasaki, S., Sakurai, S.
Strain-Induced Deformation of Glassy Spherical Microdomains
in Elastomeric Triblock Copolymer Films: Time-Resolved
2d-SAXS Measurements under Stretched State
Macromolecules 50, 3404 (2017).
aA
Koga, M., Sato, K., Kang, S., Tokita, M.
Microphase-Separated Morphology and Liquid Crystal
Orientation in Block Copolymers Comprising a Main-Chain
Liquid Crystalline Central Segment Connected to Side-Chain
Liquid Crystalline Segments at Both Ends
Macromol. Chem. Phys. 219, 1700332 (2018).
aA
Tanoue, H., Inutsuka, M., Yamada, N.L., Ito, K., Yokoyama, H.
Kinetics of Dynamic Polymer Brush Formation
Macromolecules 50, 5549 (2017).
aA
Matsui, K., Li, H., Nozue, Y., Rojas, G., Bell, M.,
Shinohara, Y., Amemiya, Y., Wagener, K.B.
A Study of ADMET Polyethylene with 21-Carbon Branches on
Every 15th Compared to Every 19th Carbon: What a Difference
Four Extra Backbone Methylenes Make
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Oka, T., Hasan, M., Islam, M.Z., Moniruzzaman, M.,
Yamazaki, M.
Low-pH-Induced Lamellar to Bicontinuous Primitive Cubic
Phase Transition in Dioleoylphosphatidylserine/Monoolein
Membranes
Langmuir 33, 12487 (2017).
aA
Nakanishi, K., Mikiya, Y., Ishiguro, T., Ueno S.
Crystallization Behavior of Molecular Compound in Binary
Mixture System of 1,3-Dioleoyl-2-Palmitoyl-sn-Glycerol and1,3-Dipalmitoyl-2-Oleoyl-sn-Glycerol
J. Am. Oil Chem.' Soc. 95, 51 (2018).
aA
Takeno, H., Kozuka, M.
Effects of Cooling Rates on Self-Assembling Structures of
12-Hydroxystearic Acid in an Ionic Liquid
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Tanaka, T., Okoshi, K.
Metal Nano Patterning using Liquid Crystalline Polymer
Kinzoku 88, 5 (2018).
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Wang, Z.-M., Peng, W., Takenaka, Y., Yoshizawa, N.,
Kosuge, K., Wang, W., Ozin, G.A.
Sandwich-Type Nanocomposite of Reduced Graphene Oxide
and Periodic Mesoporous Silica with Vertically Aligned
Mesochannels of Tunable Pore Depth and Size
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Fushinobu, S.
Crystal structures of carbohydrate-active enzymes withpotential for practical oligosaccharide synthesis
Int. J. Microgravity Sci. Appl. 34, 340109 (2017).

Yonezawa, K., Shimizu, N., Kurihara, K., Yamazaki, Y.,
Kamikubo, H., Kataoka, M.
Neutron crystallography of photoactive yellow protein reveals
unusual protonation state of Arg52 in the crystal
Sci. Rep. 7, 9361 (2017).
aA
Komiya, D., Hori, A., Ishida, T., Igarashi, K., Samejima, M.,
Koseki, T., Fushinobu, S.
Crystal Structure and Substrate Specificity Modification ofAcetyl Xylan Esterase from Aspergillus luchuensis
Appl. Environ. Microbiol. 83, e01251 (2017).
6C
Sato-Tomita, A., Shibayama, N.
Size and Shape Controlled Crystallization of Hemoglobin for
Advanced Crystallography
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Hosokawa, S., Stellhorn, J.R., Matsushita, T., Happo, N.,
Kimura, K., Hayashi, K., Ebisu, Y., Ozaki, T., Ikemoto, H.,
Setoyama, H., Okajima, T., Yoda, Y., Ishii, H., Liao, Y.-F.,
Kitaura, M., Sasaki, M.
Impurity position and lattice distortion in a Mn-doped Bi2Te3
topological insulator investigated by x-ray fluorescenceholography and x-ray absorption fine structure
Phys. Rev. B 96, 214207 (2017).
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Sasaki, Y., Okube, M., Sasaki, S.
Resonant and non-resonant magnetic scatterings with circularly
polarized X-rays: Magnetic scattering factor and electron
density of gadolinium iron garnet
Acta Crystallogr. A- Found Adv. 73, 257 (2017).
aA
Sakai, N., Fukuda, K., Ma, R., Sasaki, T.
Synthesis and Substitution Chemistry of Redox-Active
Manganese/Cobalt Oxide Nanosheets
Chem. Mater. 30, 1517 (2018).
aA
Yamamoto, T., Hayashi, K., Happo, N., Hosokawa, S.,
Tajiri, H.
Local atomic structure near an Nb atom in aged -Ti alloys
Acta Mater. 131, 534 (2017).
aA
Nurdiwijayanto, L., Ma, R., Sakai, N., Sasaki, T.
Insight into the structural and electronic nature of chemicallyexfoliated molybdenum disulfide nanosheets in aqueous
dispersions
Dalton Trans. 47, 3014 (2018).
7A
Endo, O., Nakamura, M., Amemiya, K., Ozaki, H.
Compression-Induced Conformation and Orientation Changes
in an n-Alkane Monolayer on a Au(111) Surface
Langmuir 33, 3934 (2017).
aA
Hayakawa, T., Arakawa, M., Sarugaku, S., Ando, K.,
Tobita, K., Kiyomura, Y., Kawano, T., Terasaki, A.
Characterization of Cerium and Oxygen Atoms in Free Clustersof Cerium Oxide by X-ray Absorption Spectroscopy
Top. Catal. 61, 119 (2018).
aA
Bainsla, L., Yilgin, R., Okabayashi, J., Ono, A., Suzuki, K.,
Mizukami, S.
Structural and magnetic properties of epitaxial thin films of theequiatomic quaternary CoFeMnSi Heusler alloy
Phys. Rev. B 96, 094404 (2017).
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Okabayashi, J., Koyama, T., Suzuki, M., Tsujikawa, M.,
Shirai, M., Chiba, D.
Induced perpendicular magnetization in a Cu layer inserted
between Co and Pt layers revealed by x-ray magnetic circulardichroism
Sci. Rep. 7, 46132 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
Watanabe, T., Yamada, Y., Koide, A., Entani, S., Li, S., I.
Popov, Z., Sorokin, P. B., Naramoto, H., Sasaki, M.,
Amemiya, K., Sakai S.
Interface-induced perpendicular magnetic anisotropy of Co
nanoparticles on single-layer h-BN/Pt(111)
Appl. Phys. Lett. 112, 022407 (2018).
7C
Hase, H., Nishiuchi, T., Sato, T., Otake, T., Yaita, T.,
Kobayashi, T., Yoneda, T.
A novel method for remediation of nickel containing
wastewater at neutral conditions
J. Hazard. Mater. 329, 49 (2017).
aA
Moriai, K., Nakajima, N., Moriyoshi, C., Maruyama, H.
Synthesis of TiO2 nanotubes: Effect of post-treatment on
crystallinity and photocatalytic activity
Mater. Res. Express 4, 045017 (2017).
aA
Shibata, G., Kitamura, M., Minohara, M., Yoshimatsu, K.,
Kadono, T., Ishigami, K., Harano, T., Takahashi, Y.,
Sakamoto, S., Nonaka, Y., Ikeda, K., Chi, Z., Furuse, M.,
Fuchino, S., Okano, M., Fujihira, J., Uchida, A.,
Watanabe, K., Fujihira, H., Fujihira, S., Tanaka, A.,
Kumigashira, H., Koide, T., Fujimori, A.
Anisotropic spin-density distribution and magnetic anisotropyof strained La1−xSrxMnO3 thin films: angle-dependent x-ray
magnetic circular dichroism
npj Quantum Mater. 3, 3 (2018).
aA
Tezuka, Y., Yokouchi, Y., Sasaki, S., Nakamoto, S.,
Nishiyama, K., Mikami, M., Im, H.J., Watanabe, T.,
Nozawa, S., Nakajima, N., Iwazumi, T.
Electronic structure study of CaCu3Ti4O12 by means of X-ray
Raman scattering
J. Electron. Spectrosc. Relat. Phenom. 220, 114 (2017).
aA
Hamai, T., Arai, S., Minemawari, H., Inoue, S., Kumai, R.,
Hasegawa, T.
Tunneling and Origin of Large Access Resistance in LayeredCrystal Organic Transistors
Phys. Rev. Appl. 8, 054011 (2017).
aA
Yoshida, Y., Hoshino, A., Kitamoto, S., Sugimoto, J., Ishii, R.,
Ohgi, Y., Sato, S., Nukamori, S., Fujimoto, R.,
Yamasaki, N.Y., Ina, T., Uruga, T.
Transmission measurement of the spare Beryllium window of
the SXS onboard the Hitomi satellite in 2.0-12 keV with KEKPF
Proceedings of SPIE - The International Society for OpticalEngineering 10397, 103971D (2017).
8A
Shiratsuchi, Y., Nakano, Y., Inami, N., Ueno, T., Ono, K.,
Kumai, R., Sagayama, R., Nakatani, R.
Determination of specific ion positions of Cr 3+ and O2- in Cr2O3
thin films and their relationship to exchange anisotropy at
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J. Appl. Phys. 123, 103903 (2018).
aA
Yamauchi, T., Ueda, H., Ohwada, K., Nakao, H., Ueda, Y.
Devil's staircase of odd-number charge order modulations indivalent β-vanadium bronzes under pressure
Phys. Rev. B 97, 125138 (2018).
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Kobayashi, K., Nakao, A., Maki, S., Yamaura, J., Katase, T.,
Sato, H., Sagayama, H., Kumai, R., Kuramoto, Y.,
Murakami, Y., Hiramatsu, H., Hosono, H.
Structure determination in thin film Ba1-xLaxFe2As2: Relation
between the FeAs4 geometry and superconductivity
Phys. Rev. B 96, 125116 (2017).
aA

Hiramatsu, T., Yoshida, Y., Saito, G., Otsuka, A., Yamochi, H.,
Maesato, M., Shimizu, Y., Ito, H., Nakamura, Y., Kishida, H.,
Watanabe, M., Kumai, R.
Design and Preparation of a Quantum Spin Liquid Candidate
-(ET)2Ag2(CN)3 Having a Nearby Superconductivity
Bull. Chem. Soc. Jpn. 90, 1073 (2017).
aA
Sasaki, S., Hashimoto, K., Kobayashi, R., Itoh, K., Iguchi, S.,
Nishio, Y., Ikemoto, Y., Moriwaki, T., Yoneyama, N.,
Watanabe, M., Ueda, A., Mori, H., Kobayashi, K., Kumai, R.,
Murakami, Y., Muller, J., Sasaki, T.
Crystallization and vitrification of electrons in a glass-forming
charge liquid
Science 357, 1381 (2017).
aA
Kobayashi K., Horiuchi S., Ishibashi S., Murakami Y.,
Kumai R.
Field-Induced Antipolar-Polar Structural Transformation and
Giant Electrostriction in Organic Crystal
J. Am. Chem. Soc. 140, 3842 (2018).
aA
Goto, M., Ueda, H., Michioka, C., Matsuo, A., Kindo, K.,
Sugawara, K., Kobayashi, S., Katayama, N., Sawa, H.,
Yoshimura, K.
Ising-like anisotropy stabilized 1/3 and 2/3 magnetization
plateaus in the V3+ kagome lattice antiferromagnets Cs 2KV3F12,
Cs2NaV3F12, and Rb2NaV3F12
Phys. Rev. B 95, 134436 (2017).
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Niwa, H., Kobayashi, W., Shibata, T., Nitani, H., Moritomo, Y.
Invariant nature of substituted element inmetal-hexacyanoferrate
Sci. Rep. 7, 13225 (2017).
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Miyasaka, S., Uekubo, M., Tsuji, H., Nakajima, M., Tajima, S.,
Shiota, T., Mukuda, H., Sagayama, H., Nakao, H., Kumai, R.,
Murakami, Y.
Three superconducting phases with different categories ofpairing in hole- and electron-doped LaFeAs1-xPxO
Phys. Rev. B 95, 214515 (2017).
aA
Hirohata, A., Huminiuc, T., Sinclair, J., Wu, H.,
Samiepour, M., Vallejo-Fernandez, G., O'Grady, K., Balluf, J.,
Meinert, M., Reiss, G., Simon, E., Khmelevskyi, S.,
Szunyogh, L., Díaz, R.Y., Nowak, U., Tsuchiya, T.,
Sugiyama, T., Kubota, T., Takanashi, K., Inami, N., Ono, K.
Development of antiferromagnetic Heusler alloys for the
replacement of iridium as a critically raw material
J. Phys. D: Appl. Phys. 50, 443001 (2017).
8B
Yamauchi, T., Ueda, H., Ohwada, K., Nakao, H., Ueda, Y.
Devil's staircase of odd-number charge order modulations indivalent β-vanadium bronzes under pressure
Phys. Rev. B 97, 125138 (2018).
aA
Sudayama, T., Nakao, H., Yamasaki, Y., Murakami, Y.,
Asai, S., Okazaki, R., Yasui, Y., Terasaki, I.
Spin State of Co3+ in LaCo1-xRhxO3 Studied Using X-ray
Absorption Spectroscopy
J. Phys. Soc. Jpn. 86, 094701 (2017).
aA
Asakura, D., Nanba, Y., Makinose, Y., Matsuda, H.,
Hosono, E.
Investigation of the relationship between the cycle performanceand the electronic structure in LiAl xMn2-xO4 (x = 0 and 0.2)
using soft X-ray spectroscopy
Phys. Chem. Chem. Phys. 19, 16507 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Ishibashi, H., Shimono, S., Tomiyasu, K., Lee, S.,
Kawaguchi, S., Iwane, H., Nakao, H., Torii, S., Kamiyama, T.,
Kubota, Y.
Small crystal distortion and long-range antiferro-orbital
ordering in the spinel oxide CoV2O4
Phys. Rev. B 96, 144424 (2017).
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Kyakuno, H., Matsuda, K., Nakai, Y., Ichimura, R., Saito, T.,
Miyata, Y., Hata, K., Maniwa, Y.
Rotational dynamics and dynamical transition of water insidehydrophobic pores of carbon nanotubes
Sci. Rep. 7, 14834 (2017).
aA
Shibata, Y., Tsutsumi, J., Matsuoka, S., Minemawari, H.,
Arai, S., Kumai, R., Hasegawa, T.
Unidirectionally crystallized stable n-type organic thin-film
transistors based on solution-processable donor-acceptor
compounds
Adv. Electron. Mater. 3, 1700097 (2017).
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Hamai, T., Arai, S., Minemawari, H., Inoue, S., Kumai, R.,
Hasegawa, T.
Tunneling and Origin of Large Access Resistance inLayered-Crystal Organic Transistors
Phys. Rev. Appl. 8, 054011 (2017).
aA
Kobayashi K., Horiuchi S., Ishibashi S., Murakami Y.,
Kumai R.
Field-Induced Antipolar-Polar Structural Transformation and
Giant Electrostriction in Organic Crystal
J. Am. Chem. Soc. 140, 3842 (2018).
aA
Goto, M., Ueda, H., Michioka, C., Matsuo, A., Kindo, K.,
Sugawara, K., Kobayashi, S., Katayama, N., Sawa, H.,
Yoshimura, K.
Ising-like anisotropy stabilized 1/3 and 2/3 magnetization
plateaus in the V3+ kagome lattice antiferromagnets Cs 2KV3F12,
Cs2NaV3F12, and Rb2NaV3F12
Phys. Rev. B 95, 134436 (2017).
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Nishimura, S., Tanibata, N., Hayashi, A., Tatsumisago, M.,
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The crystal structure and sodium disorder of high-temperaturepolymorph β-Na3PS4
J. Mater. Chem. A 5, 25025 (2017).
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Kawai, K., Zhao, W., Nishimura, S., Yamada, A.
High-Voltage Cr4+/Cr3+ Redox Couple in Polyanion
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Fujihala, M., Koorikawa, H., Mitsuda, S., Morita, K.,
Tohyama, T., Tomiyasu, K., Koda, A., Okabe, H., Itoh, S.,
Yokoo, T., Ibuka, S., Tadokoro, M., Itoh, M., Sagayama, H.,
Kumai, R., Murakami, Y.
Possible Tomonaga-Luttinger spin liquid state in the spin-1/2
inequilateral diamond-chain compound K3Cu3AlO2(SO4)4
Sci. Rep. 7, 16785 (2017).
aA
Osaka, T., Takahashi, H., Sagayama, H., Yamasaki, Y.,
Ishiwata, S.
High-pressure synthesis of an unusual antiferromagnetic metal
CaCoO3 with GdFeO3 -type perovskite structure
Phys. Rev. B 95, 224440 (2017).
aA
Fujihala, M., Sugimoto, T., Tohyama, T., Mitsuda, S.,
Mole, R.A., Yu, D.H., Yano, S., Inagaki, Y., Morodomi, H.,
Kawae, T., Sagayama, H., Kumai, R., Murakami, Y.,
Tomiyasu, K., Matsuo, A., Kindo, K.
Cluster-Based Haldane State in an Edge-Shared Tetrahedral
Spin-Cluster Chain: Fedotovite K2Cu3O(SO4)3
Phys. Rev. Lett. 120, 077201 (2018).
aA

Miyasaka, S., Uekubo, M., Tsuji, H., Nakajima, M., Tajima, S.,
Shiota, T., Mukuda, H., Sagayama, H., Nakao, H., Kumai, R.,
Murakami, Y.
Three superconducting phases with different categories ofpairing in hole- and electron-doped LaFeAs1-xPxO
Phys. Rev. B 95, 214515 (2017).
aA
Kobayashi, A., Yamamoto, N., Shigeta, Y., Yoshida, M.,
Kato, M.
Two-way vapochromism of a luminescent platinum(II)complex with phosphonic-acidfunctionalized bipyridine ligand
Dalton Trans. 47, 1548 (2018).
aA
Nakano, A., Sugawara, K., Tamura, S., Katayama, N.,
Matsubayashi, K., Okada, T., Uwatoko, Y., Munakata, K.,
Nakao, A., Sagayama, H., Kumai, R., Sugimoto, K.,
Maejima, N., Machida, A., Watanuki, T., Sawa, H.
Pressure-induced coherent sliding-layer transition in the
excitonic insulator Ta2NiSe5
IUCrJ 5, 158 (2018).
aA
Miao, P., Lin, X., Koda, A., Lee, S., Ishikawa, Y., Torii, S.,
Yonemura, M., Mochiku, T., Sagayama, H., Itoh, S., Ikeda, K.,
Otomo, T., Wang, Y., Kadono, R., Kamiyama, T.
Large Magnetovolume Effect Induced by Embedding
Ferromagnetic Clusters into Antiferromagnetic Matrix of
Cobaltite Perovskite
Adv. Mater. 29, 1605991 (2017).
9A
Oshita, H., Kikuchi, M., Mieda, K., Ogura, T., Yoshimura, T.,
Tani, F., Yajima, T., Abe, H., Mori, S., Shimazaki, Y.
Characterization of Group 10-Metal-p-Substituted Phenoxyl
Radical Complexes with Schiff Base Ligands
ChemistrySelect 2, 10221 (2017).
aA
Masuda, T., Uosaki, K.
In situ determination of electronic structure at solid/liquidinterfaces
J. Electron. Spectrosc. Relat. Phenom. 221, 88 (2017).
aA
Kamegawa, T., Irikawa, K., Yamashita, H.
Multifunctional surface designed by nanocomposite coating ofpolytetrafluoroethylene and TiO2 photocatalyst: self-cleaningand superhydrophobicity
Sci. Rep. 7, 13628 (2017).
aA
Takahashi, M., Koizumi, H., Chun, W.-J., Kori, M., Imaoka, T.,
Yamamoto, K.
Finely controlled multimetallic nanocluster catalysts forsolvent-free aerobic oxidation of hydrocarbons
Sci. Adv. 3, e1700101 (2017).
aA
Tatemizo, N., Imada, S., Miura, Y., Nishio, K., Isshiki, T.
Crystallographic and electronic properties of AlCrN films thatabsorb visible light
AIP Adv. 7, 055306 (2017).
aA
Tatemizo, N., Miura, Y., Nishio, K., Hirata, S., Sawa, F.,
Fukui, K., Isshiki, T., Imada, S.
Band structure and photoconductivity of blue-green lightabsorbing AlTiN films
J. Mater. Chem. A 5, 20824 (2017).
aA
Abe, H., Niwa, Y., Kitano, M., Inoue, Y., Yokoyama, T.,
Hara, M., Hosono, H.
Oxidation number estimation of Ca in Ca-N compounds from
Ca K-edge XANES spectra
Bull. Chem. Soc. Jpn. 90, 963 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Ueda, J., Katayama, M., Asami, K., Xu, J., Inada, Y.,
Tanabe, S.
Evidence of valence state change of Ce3+ and Cr3+ during UVcharging process in Y3Al2Ga3O12 persistent phosphors
Opt. Mater. Express 7, 2471 (2017).
aA
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Europium anomaly variation under low-temperature water-rockinteraction: A new thermometer
Geochem. Int. 55, 822 (2017).
aA
Nakada, R., Tanaka, M., Tanimizu, M., Takahashi, Y.
Aqueous speciation is likely to control the stable isotopic
fractionation of cerium at varying pH
Geochim. Cosmochim. Acta 218, 273 (2017).
aA
Nakada, A., Nishioka, S., Vequizo, J.J.M., Muraoka, K.,
Kanazawa, T., Yamakata, A., Nozawa, S., Kumagai, H.,
Adachi, S., Ishitani, O., Maeda, K.
Solar-driven Z-scheme water splitting using tantalum/nitrogen
co-doped rutile titania nanorod as an oxygen evolution
photocatalyst
J. Mater. Chem. A 5, 11710 (2017).
aA
Murao R., Harano T., Kimura M., Jung I.-H.
Thermodynamic Modeling of the SFCA Phase
Ca2(Fe,Ca)6(Fe,Al,Si)6O20
ISIJ International 58, 259 (2018).
aA
Kimijima, K., Niwa, Y., Kimura, M.
In Situ XAFS Observation of Chemical Species Near
Solid/Liquid Interface in a Model Reaction of Pitting Process
ECS Trans. 77, 831 (2017).
aA
Ohtsu, H., Bennett, T.D., Kojima, T., Keen, D.A., Niwa, Y.,
Kawano, M.
Amorphous-amorphous transition in a porous coordination
polymer
Chem. Commun. 52, 7060 (2017).
aA
Nur, A. S. M., Matsukawa, T., Funada, E., Hinokuma, S.,
Machida, M.
Platinum Supported on Ta2O5 as a Stable SO3 Decomposition
Catalyst for Solar Thermochemical Water Splitting Cycles
ACS Appl. Energy Mater. 1, 744 (2018).
aA
Hinokuma, S., Kawabata, Y., Kiritoshi, S., Matsuki, S.,
Machida, M.
Operando XAFS studies of supported copper oxides forcatalytic ammonia combustion
J. Ceram. Soc. Jpn. 125, 770 (2017).
aA
Hinokuma, S., Shimanoe, H., Kawabata, Y., Kiritoshi, S.,
Araki, K., Machida, M.
Supported and unsupported manganese oxides for catalyticammonia combustion
Catal. Commun. 105, 48 (2018).
aA
Nur A.S.M., Funada E., Kiritoshi S., Matsumoto A., Kakei R.,
Hinokuma S., Yoshida H., Machida M.
Phase-Dependent Formation of Coherent Interface Structure
between PtO2 and TiO2 and Its Impact on Thermal
Decomposition Behavior
J. Phys. Chem. C 122, 662 (2018).
aA
Imaoka, T., Akanuma, Y., Haruta, N., Tsuchiya, S.,
Ishihara, K., Okayasu, T., Chun, W.-J., Takahashi, M.,
Yamamoto, K.
Platinum clusters with precise numbers of atoms for
preparative-scale catalysis
Nat. Commun. 8, 688 (2017).
aA

Takeda, Y., Kato, H., Kobayashi, M., Nozawa, S.,
Kobayashi, H., Kakihana, M.
Photoluminescence Properties of Double Perovskite Tantalates
Activated with Mn4+, AE2LaTaO6:Mn4+(AE = Ca, Sr, and Ba)
J. Phys. Chem. C 121, 18837 (2017).
aA
Xu, B., Kaneko, T., Shibuta, Y., Kato, T.
Preferential synthesis of (6,4) single-walled carbon nanotubes
by controlling oxidation degree of Co catalyst
Sci. Rep. 7, 11149 (2017).
aA
Yamamoto, H., Maity, P., Takahata, R., Yamazoe, S.,
Koyasu, K., Kurashige, W., Negishi, Y., Tsukuda, T.
Monodisperse Iridium Clusters Protected by Phenylacetylene:
Implication for Size-Dependent Evolution of Binding Sites
J. Phys. Chem. C 121, 10936 (2017).
9C
Wang, CY., Takeda, T., ten Kate, OM., Tansho, M.,
Deguchi, K., Takahashi, K., Xie, R-J., Shimizu, T., Hirosaki, N.
Ce-Doped La3Si6.5Al1.5N9.5O5.5, a Rare Highly Efficient BlueEmitting Phosphor at Short Wavelength toward High Color
Rendering White LED Application
ACS Appl. Mater. Interfaces 9, 22665 (2017).
aA
Wang, C.-Y., ten Kate, O.M., Takeda, T., Hirosaki, N.
Efficient and thermally stable blue-emitting Ce3+ doped
LaAl(Si6-zAlz)(N10-zOz) (JEM:Ce) phosphors for white LEDs
J. Mater. Chem. C 5, 8295 (2017).
aA
Hosokawa S., Stellhorn J.R., Ikemoto H., Mimura K.,
Wakita K., Mamedov N.
Lattice Distortions in TlInSe2 Thermoelectric Material Studied
by X-Ray Absorption Fine Structure
Phys. Status Solidi A 215, 1700416 (2018).
aA
Konishi, H., Hirano, T., Takamatsu, D., Gunji, A., Feng, X.,
Furutsuki, S., Okumura, T., Terada, S.
Effect of chemical treatment on the electrochemical propertiesof Li1.2NixMn0.8−xO2 (x = 0.2 and 0.25) in lithium-ion batteries
J. Solid State Chem. 258, 610 (2018).
aA
Kumakura, S., Tahara, Y., Sato, S., Kubota, K., Komaba, S.
P’2-Na2/3Mn0.9Me0.1O2 (Me = Mg, Ti, Co, Ni, Cu, and Zn):
Correlation between Orthorhombic Distortion andElectrochemical Property
Chem. Mater. 29, 8958 (2017).
aA
Cong, C., Nakayama, S., Maenosono, S., Harada, M.
Microwave-Assisted Polyol Synthesis of Pt/Pd and Pt/Rh
Bimetallic Nanoparticles in Polymer Solutions Prepared by
Batch and Continuous-Flow Processing.
Ind. Eng. Chem. Res. 57, 179 (2018).
aA
Siddqui, N., Sarkar, B., Pendem, C., Khatun, R.,
Sivakumar Konthala, L.N., Sasaki, T., Bordoloi, A., Bal, R.
Highly selective transfer hydrogenation of α,β- unsaturated
carbonyl compounds using Cu-based nanocatalysts
Catal. Sci. Technol. 7, 2828 (2017).
aA
Singha, R.K., Shukla, A., Yadav, A., Sasaki, T., Sandupatla, A.,
Deo, G., Bal, R.
Pt-CeO2 nanoporous spheres - an excellent catalyst for partial
oxidation of methane: effect of the bimodal pore structure
Catal. Sci. Technol. 7, 4720 (2017).
aA
Hayashi, H.
X-ray Spectroscopic Studies on Precipitation Patterns in Gels
Adv. X-Ray Chem. Anal., Jpn. 49, 25 (2018).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Tyagi, A., Yamamoto, A., Kato, T., Yoshida, H.
Bifunctional property of Pt nanoparticles deposited on TiO2 forthe photocatalytic sp3C-sp3C cross-coupling reactions between
THF and alkanes
Catal. Sci. Technol. 7, 2616 (2017).
aA
Suzuki, S., Miyayama, M.
Preparation and electrode properties of novel redoxable
nanosheets of Mn-Ni oxide with and without vacancy defects
J. Ceram. Soc. Jpn. 125, 293 (2017).
aA
Suzuki, S., Miyayama, M.
Structural Distortion in MnO2 Nanosheets and Its Suppression
by Cobalt Substitution
Nanomaterials 7, 295 (2017).
aA
Zhang, H., Kawamura, S., Tamba, M., Kojima, T.,
Yoshiba, M., Izumi, Y.
Is water more reactive than H2 in photocatalytic CO2
conversion into fuels using semiconductor catalysts under highreaction pressures?
J. Catal. 352, 452 (2017).
aA
Yuan, Q., Takakusagi, S., Wakisaka, Y., Uemura, Y., Wada, T.,
Ariga, H., Asakura, K.
Polarization-dependent total reflection fluorescence X-ray
absorption fine structure (PTRF-XAFS) studies on the structureof a Pt monolayer on Au(111) prepared by the surface-limited
redox replacement reaction
Chem. Lett. 46, 1250 (2017).
aA
Ueki, Y., Okabayashi, J., Kitazawa, T.
Guest Molecule Inserted Spin Crossover Complexes:
Fe[4-(3-Pentyl)pyridine]2[Au(CN)2]2・n Guest
Chem. Lett. 46, 747 (2017).
aA
Kimijima, K., Niwa, Y., Kimura, M.
In Situ XAFS Observation of Chemical Species Near
Solid/Liquid Interface in a Model Reaction of Pitting Process
ECS Trans. 77, 831 (2017).
aA
Konishi, H., Hirano, T., Takamatsu, D., Gunji, A., Feng, X.,
Furutsuki, S., Okumura, T., Terada, S.
Suppression of potential hysteresis between charge anddischarge reactions in lithium-rich layer-structured cathodematerial by increasing nickel/manganese ratio
Solid State Ion. 308, 84 (2017).
aA
Kuwahara, Y., Furuichi, N., Seki, H., Yamashita, H.
One-pot synthesis of molybdenum oxide nanoparticles
encapsulated in hollow silica spheres: an efficient and reusable
catalyst for epoxidation of olefins
J. Mater. Chem. A 5, 18518 (2017).
aA
Okubo, M., Sugahara, A, Kajiyama, S., Yamada, A.
MXene as a Charge Storage Host
Acc. Chem. Res. 51, 591 (2018).
aA
Kajiyama, S., Szabova, L., Iinuma, H., Sugahara, A., Gotoh, K.,
Sodeyama, K., Tateyama, Y., Okubo, M., Yamada, A.
Enhanced Li-Ion Accessibility in MXene Titanium Carbide by
Steric Chloride Termination
Adv. Energy Mater. 7, 1601873 (2017).
aA
Niwa, H., Kobayashi, W., Shibata, T., Nitani, H., Moritomo, Y.
Invariant nature of substituted element in metalhexacyanoferrate
Sci. Rep. 7, 13225 (2017).
aA

Hayashi, H., Abe, H.
Gel-State Dependencies of Brown Patterns of Mn-Fe-Based
Prussian Blue Analogues Studied by Combined X-ray
Spectroscopies
Bull. Chem. Soc. Jpn. 90, 807 (2017).
aA
Yokoyama, T., Koide, A., Uemura, Y.
Local thermal expansions and lattice strains in Elinvar andstainless steel alloys
Phys. Rev. Materials 2, 023601 (2018).
aA
Itoh, T., Imai, H.
Oxide ion diffusion mechanism related to Co and Fe ions in(Ba0.5Sr0.5)(Co0.8Fe0.2)O3-δ using in-situ X-ray absorption
spectroscopy
Phys. B: Condensed Matter 532, 54 (2018).
aA
Yamamoto, Y., Suzuki, A., Tsutsumi, N., Katagiri, M.,
Yamashita, S., Niwa, Y., Katayama, M., Inada, Y.
In situ X-ray absorption fine structure analysis of redox
reactions of nickel species with variable particle sizes supported
on silica
J. Solid State Chem. 258, 264 (2018).
aA
Okazaki, T., Seino, S., Matsuura, Y., Otake, H., Kugai, J.,
Ohkubo, Y., Nitani, H., Nakagawa, T., Yamamoto, T.A.
Effect of counterpart metals in carbon-supported Pt-based
catalysts prepared using radiation chemical method
Radiat. Phys. Chem. 133, 67 (2017).
aA
Xu, B., Kaneko, T., Shibuta, Y., Kato, T.
Preferential synthesis of (6,4) single-walled carbon nanotubes
by controlling oxidation degree of Co catalyst
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9C（SAXS）
Sakurai, S., Shirouchi, K., Munakata, S., Kurimura, H.,
Suzuki, S., Watanabe, J., Oda, T., Shimizu, N., Tanida, K.,
Yamamoto, K.
Morphology Reentry with a Change in Degree of Chain
Asymmetry in Neat Asymmetric Linear A1BA2 Triblock
Copolymers
Macromolecules 50, 8647 (2017).
aA
Fukuhara, J., Yasui, A., Yamamoto, K., Sakurai, S.
Versatile Controls of Microdomain Morphologies andTemperature Dependencies in Lamellar Spacing by Blending
Diblock Copolymers Bearing Antisymmetric Compositions
ACS OMEGA 2, 8580 (2017).
aA
Takahashi, H., Jojiki, K.
Water isotope effect on the lipidic cubic phase: Heavy
water-Induced interfacial area reduction ofmonoolein-Water system
Chem. Phys. Lipids 208, 52 (2017).
10A
Nakatsuka, A., Arima, H., Ohtaka, O., Fujiwara, K.,
Yoshiasa, A.
Single-crystal X-ray diffraction study of SrGeO3 high-pressure
perovskite phase at 100 K
J. Phys.: Conf. Ser. 950, 042015 (2017).
aA
Mashimo, T., Bagum, R., Ogata, Y., Tokuda, M., Okube, M.,
Sugiyama, K., Kinemuchi, Y., Isobe, H., Yoshiasa, A.
Structure of single-crystal rutile (TiO2) prepared byhigh-temperature ultracentrifugation
Cryst. Growth Des. 17, 1460 (2017).
aA
Suzuki, S., Simura, R., Yoshiasa, A., Sugiyama, K.
Crystal structure of -AlNiRu containing pseudo-Mackay
Clusters.
J. Phys.: Conf. Ser. 809, 012004 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
Sasaki, Y., Okube, M., Sasaki, S.
Resonant and non-resonant magnetic scatterings with circularly
polarized X-rays: Magnetic scattering factor and electron
density of gadolinium iron garnet
Acta Crystallogr. A- Found Adv. 73, 257 (2017).
aA
Ono, K., Harada, Y., Yoneda, A., Yamamoto, J., Yoshiasa, A.,
Sugiyama, K., Arima, H., Watanabe, T.
Determination of elastic constants of single-crystal chromianspinel by resonant ultrasound spectroscopy and implications for
fluid inclusion geobarometry.
Phys. Chem. Minerals 45, 237 (2018).
10C
Sakurai, S., Shirouchi, K., Munakata, S., Kurimura, H.,
Suzuki, S., Watanabe, J., Oda, T., Shimizu, N., Tanida, K.,
Yamamoto, K.
Morphology Reentry with a Change in Degree of Chain
Asymmetry in Neat Asymmetric Linear A1BA2 Triblock
Copolymers
Macromolecules 50, 8647 (2017).
aA
Terao, K.
Solution Properties of Helical Polysaccharide Derivatives
Kobunshi 66, 225 (2017).
aA
Ryoki, A., Ida, D., Terao, K.
Scattering Function of Semi-rigid Cyclic Polymers Analyzed inTerms of Worm-like Rings: Cyclic Amylose
Tris(phenylcarbamate) and Cyclic Amylose
Tris(n-butylcarbamate)
Polym. J. 49, 633 (2017).
aA
Shojima, T., Hou, F., Takahashi, Y., Matsumura, Y., Okai, M.,
Nakamura, A., Mizuno, K., Inaba, K., Kojima, M.,
Miyakawa, T., Tanokura, M.
Crystal structure of a Ca2+-dependent regulator of flagellar
motility reveals the open-closed structural transition
Sci. Rep. 8, 2014 (2018).
aA
Watanabe, Y.
Assessment study of ion-exchange chromatography combinedwith solution X-ray scattering measurement for proteincharacterization
J. Chromatogr. A 1539, 103 (2018).
aA
Ryoki, A., Yokobatake, H., Hasegawa, H., Takenaka, A.,
Ida, D., Kitamura, S., Terao, K.
Topology-Dependent Chain Stiffness and Local Helical
Structure of Cyclic Amylose
Tris(3,5-dimethylphenylcarbamate) in Solution
Macromolecules 50, 4000 (2017).
aA
Aizawa, H., Ichikawa, S., Kotake-Nara, E., Nagao, A.
Effects of a lysophosphatidylcholine and a phosphatidylcholine
on the morphology of taurocholic acid-based mixed micelles as
determined by small-angle X-ray scattering
J. Disper. Sci. Technol. 39, 1003 (2018).
aA
Sakurai, S., Harada, T., Ohnogi, H., Isshiki, T., Sasaki, S.
Characterization of the surface morphology and grain growthnear the surface of a block copolymer thin film with cylindricalmicrodomains oriented perpendicular to the surface
Polym. J. 49, 655 (2017).
aA
Ryoki, A., Kim, DC., Kitamura, S., Terao, K.
Linear and cyclic amylose derivatives having brush like sidegroups in solution: Amylose tris(n-octadecylcarbamate)s
Polymer 137, 13 (2018).
aA

Hishida, M., Nomura, Y., Akiyama, R., Yamamura, Y.,
Saito, K.
Electrostatic double-layer interaction between stacked charged
bilayers
Phys. Rev. E 96, 040601(R) (2017).
aA
Saito, K., Hishida, M., Koike, K., Nagatomo, S., Yamamura, Y.
X-ray study of molecular association in alcohols having bulky
substituentsChem. Phys. Lett. 673, 74 (2017).
aA
Tokita, M.
Long period structures in polymer liquid crystals investigatedusing synchrotron radiation X-ray scattering;
Kobunshi 66, 413 (2017).
aA
Yokoyama, Y., Tanaka, H., Yano, S., Takahashi, H.,
Kikukawa, T., Sonoyama, M., Takenaka, K.
Spontaneous stacking of purple membranes during
immobilization with physical cross-linked poly(vinyl alcohol)hydrogel with retaining native-like functionality ofbacteriorhodopsin
J. Appl. Phys. 121, 204701 (2017).
aA
Osawa, S., Hijikawa, R., Marubayashi, H., Nojima, S.
Effects of crystal structure of poly(-propiolactone) blocks on
the cooperative crystallization of apolyethylene-block-poly(-propiolactone) diblock copolymer
Polymer 122, 249 (2017).
aA
Ogawa, T., Saijo, S., Shimizu, N., Jiang, X., Hirokawa, N.
Mechanism of Catalytic Microtubule Depolymerization via
KIF2-Tubulin Transitional Conformation
Cell Rep. 20, 2626 (2017).
aA
Satoh, T., Song, C., Zhu, T., Toshimori, T., Murata, K.,
Hayashi, Y., Kamikubo, H., Uchihashi, T., Kato, K.
Visualisation of a flexible modular structure of the ER
folding-sensor enzyme UGGT
Sci. Rep. 7, 12142 (2017).
aA
Kobayashi, N., Arai, R.
Design and construction of self-assembling supramolecular
protein complexes using artificial and fusion proteins as
nanoscale building blocks
Curr. Opin. Biotech. 46, 57 (2017).
aA
Nyuui, T., Matsuba, G., Sato, S., Nagai, K., Fujimori, A.
Correlation between gas transport properties and themorphology/dynamics of crystalline fluorinated copolymer
membranes
J. Appl. Polym. Sci. 135, 45665 (2018).
aA
Matsuba, G., Kobayashi, T., Chonan, Y.
Detailed Analysis of Aliphatic Polyurea Crystals
J. Fiber Sci. Technol. 73, 122 (2017).
aA
Abe, R., Nagoshi, K., Arai, T., Watanabe, S., Sano, Y.,
Matsuura, H., Takagi, H., Shimizu, N., Koka, M., Sato, T.
Microscopic analyses of complexes formed in adsorbent for Mo
and Zr separation chromatography
Nucl. Instrum. Methods Phys. Res. B 404, 173 (2017).
aA
Uchida, S., Ishige, R., Ando, S.
Enhancement of Thermal Diffusivity in Phase-Separated
Bismaleimide/Poly(ether imide) Composite Films Containing
Needle-Shaped ZnO Particles
Polymers 97, 263 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Adachi, N., Aizawa, K., Kratzer, Y., Saijo, S., Shimizu, N.,
Senda, T.
Improved method for soluble expression and rapid purificationof yeast TFIIA.
Protein Expr. Purif. 133, 50 (2017).
aA
Fujita, J., Harada, R., Maeda, Y., Saito, Y., Mizohata, E.,
Inoue, T., Shigeta, Y., Matsumura, H.
Identification of the key interactions in structural transition
pathway of FtsZ from Staphylococcus aureus
J. Struct. Biol 198, 65 (2017).
aA
Marubayashi, H., Ushio, T., Nojima, S.
Crystallization of polyesters composed of isohexides andaliphatic dicarboxylic acids: Effects of isohexide
stereoisomerism and dicarboxylic acid chain length
Polym. Degrad. Stabil. 146, 174 (2017).
aA
Tomita, S., Shimizu, N., Igarashi, N., Takagi, H., Sasaki, S.,
Sakurai, S.
Time-resolved 2d-SAXS measurements to reveal mechanism ofcylinder orientation upon sphere-to-cylinder transition under aplanar flow in an SEBS triblock copolymer sheet
Eur. Polym. J. 93, 382 (2017).
aA
Chen, M., Kato, K., Kubo, Y., Tanaka, Y., Liu, Y., Long, F.,
Whitman, W.B., Lill, P., Gatsogiannis, C., Raunser, S.,
Shimizu, N., Shinoda, A., Nakamura, A., Tanaka, I., Yao, M.
Structural basis for the tRNA-dependent cysteine biosynthesis
Nat. Commun. 8, 1521 (2017).
aA
Hibino, E., Inoue, R., Sugiyama, M., Kuwahara, J.,
Matsuzaki, K., Hoshino, M.
Identification of heteromolecular binding sites in transcription
factors Sp1 and TAF4 using high-resolution nuclear magnetic
resonance spectroscopy
Protein Sci. 26, 2280 (2017).
aA
Morishima, K., Sugawara, S., Yoshimura, T., Shibayama, M.
Structure and Rheology of Wormlike Micelles Formed by
Fluorocarbon-Hydrocarbon-Type Hybrid Gemini Surfactant in
Aqueous Solution
Langmuir 33, 6084 (2017).
aA
Yamauchi, M., Adhikari, B., Prabhu, D.D., Lin, X., Karatsu, T.,
Ohba, T., Shimizu, N., Takagi, H., Haruki, R., Adachi, S.,
Kajitani, T., Fukushima, T., Yagai, S.
Supramolecular Polymerization of Supermacrocycles: Effect ofMolecular Conformations on Kinetics and Morphology
Chem. - Eur. J. 23, 5270 (2017).
aA
Adhikari, B., Yamada, Y., Yamauchi, M., Wakita, K., Lin, X.,
Aratsu, K., Ohba, T., Karatsu, T., Hollamby, M.J., Shimizu, N.,
Takagi, H., Haruki, R., Adachi, S., Yagai, S.
Light-induced unfolding and refolding of supramolecularpolymer nanofibers
Nat. Commun. 8, 15254 (2017).
aA
Kawazu, K., Nakagawa, S., Ishizone, T., Nojima, S., Arai, D.,
Yamaguchi, K., Nakahama, S.
Effects of Bulky End-Groups on the Crystallization Kinetics ofPoly(-caprolactone) Homopolymers Confined in a Cylindrical
Nanodomain
Macromolecules 50, 7202 (2017).
aA
Fujita, J., Maeda, Y., Mizohata, E., Inoue, T., Kaul, M.,
Parhi, A.K., Lavoie, E.J., Pilch, D.S., Matsumura, H.
Structural Flexibility of an Inhibitor Overcomes Drug
Resistance Mutations in Staphylococcus aureus FtsZACS Chem. Biol. 12, 1947 (2017).
aA

Nojima, S., Fujishima, A., Kato, K., Ohuchi, K., Shimizu, N.,
Yonezawa, K., Tajima, K., Yao, M.
Crystal structure of the flexible tandem repeat domain ofbacterial cellulose synthesis subunit C
Sci. Rep. 7, 13018 (2017).
aA
Hayashi, T., Senda, M., Suzuki, N., Nishikawa, H., Ben, C.,
Tang, C., Nagase, L., Inoue, K., Senda, T., Hatakeyama, M.
Differential Mechanisms for SHP2 Binding and Activation Are
Exploited by Geographically Distinct Helicobacter pylori CagA
Oncoproteins
Cell Rep. 20, 2876 (2017).
aA
Shimizu, H., Toma-Fukai, S., Saijo, S., Shimizu, N.,
Kontani, K., Katada, T., Shimizu, T.
Structure-based analysis of the guanine nucleotide exchange
factor SmgGDS reveals armadillo-repeat motifs and key
regions for activity and GTPase binding
J. Biol. Chem. 292, 13441 (2017).
aA
Shimizu, N., Ekimoto, T., Anami, Y., Ito, M., Ikeguchi, M.,
Yamamoto, K.
Solution structure analysis of apo and antagonist-binding formof vitamin D receptor ligand-binding domain studied by
MD-SAXS hybrid approach
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11A
Jamsranjav, E., Kuge, K., Ito, A., Kinjo, Y., Shiina, T.
Evaluation of noise limits to improve image processing in soft
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aA
Jamsranjav, E., Kuge K., Ito A., Kinjo Y., Shina T.
Eectiveness of Noise Removal for Image Correction in Soft
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Radioisotopes 66, 137 (2017).
aA
Miyanaga, T., Matsumura, R., Seo, M., Takeda, K.,
Hatanaka, D., Yoshizawa, M.
Polarized XAFS Analyses for MgB2Thin Films
J. Supercond. Nov. Magn. 30, 1665 (2017).
aA
Tanaka, T., Uchida, H., Nakajima, H., Tsunemi, H.,
Hayashida, K., Go Tsuru, T., Dotani, T., Nagino, R., Inoue, S.,
Katada, S., Washino, R., Ozaki, M., Tomida, H., Natsukari, C.,
Ueda, S., Iwai, M., Mori, K., Yamauchi, M., Hatsukade, I.,
Nishioka, Y., Isoda, E., Nobukawa, M., Hiraga, J.S.,
Kohmura, T., Murakami, H., Nobukawa, K.K., Bamba, A.,
Doty, J.P.
Soft X-ray Imager aboard Hitomi (ASTRO-H)
J. Astron. Telesc. Instrum. Syst. 4, 011211 (2018).
aA
Murao R., Harano T., Kimura M., Jung I.-H.
Thermodynamic Modeling of the SFCA Phase
Ca2(Fe,Ca)6(Fe,Al,Si)6O20
ISIJ International 58, 259 (2018).
11B
Sudayama, T., Nakao, H., Yamasaki, Y., Murakami, Y.,
Asai, S., Okazaki, R., Yasui, Y., Terasaki, I.
Spin State of Co3+ in LaCo1-xRhxO3 Studied Using X-ray
Absorption Spectroscopy
J. Phys. Soc. Jpn. 86, 094701 (2017).
aA
Sano, A., Takaoka, M., Shiota, K.
Vapor-phase elemental mercury adsorption by activated carbon
co-impregnated with sulfur and chlorine
Chem. Eng. J. 315, 598 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Tanaka, T., Uchida, H., Nakajima, H., Tsunemi, H.,
Hayashida, K., Go Tsuru, T., Dotani, T., Nagino, R., Inoue, S.,
Katada, S., Washino, R., Ozaki, M., Tomida, H., Natsukari, C.,
Ueda, S., Iwai, M., Mori, K., Yamauchi, M., Hatsukade, I.,
Nishioka, Y., Isoda, E., Nobukawa, M., Hiraga, J.S.,
Kohmura, T., Murakami, H., Nobukawa, K.K., Bamba, A.,
Doty, J.P.
Soft X-ray Imager aboard Hitomi (ASTRO-H)
J. Astron. Telesc. Instrum. Syst. 4, 011211 (2018).
aA
Tanaka, T., Kato, M., Saito, N., Owada, S., Tono, K.,
Yabashi, M., Ishikawa, T.
Compact bolometric radiometer for free-electron lasers inwavelength range from extreme-ultraviolet to x-rays
Opt. Lett. 42, 4776 (2017).
aA
Fujimori, T., Hayashi, H., Nakajima, K.
Phosphorus Speciation in Sludge from Nickel Electroplating
Mater. Trans. 58, 1337 (2017).
aA
Yoshida, Y., Hoshino, A., Kitamoto, S., Sugimoto, J., Ishii, R.,
Ohgi, Y., Sato, S., Nukamori, S., Fujimoto, R.,
Yamasaki, N.Y., Ina, T., Uruga, T.
Transmission measurement of the spare Beryllium window of
the SXS onboard the Hitomi satellite in 2.0-12 keV with
KEK-PF
Proceedings of SPIE - The International Society for OpticalEngineering 10397, 103971D (2017).
11D
Kakiuchi, T., Yoshizaki, Y., Kubota, H., Sato, Y., Nagaoka, S.,
Mase, K.
Direct Observations of Correlation between Si-2p Components
and Surface States on Si(110)-16 × 2 Single-Domain Surface
Using Si-L23VV Auger-Electron and Si-2p Photoelectron
Coincidence Measurements
J. Phys. Soc. Jpn. 86, 054704 (2017).
aA
Hatano, T., Ejima, T., Tsuru, T.
Cr/Sc/Mo multilayer for condenser optics in water window
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aA
Li, B., Otsuka, T., Sokell, E., Dunne, P., O’Sullivan, G.,
Hara, H., Arai, G., Tamura, T., Ono, Y., Dinh, T.-H.,
Higashiguchi, T.
Characteristics of laser produced plasmas of hafnium andtantalum in the 1-7 nm region
Eur. Phys. J. D 71, 278 (2017).
12C
Masuda, T., Uosaki, K.
In situ determination of electronic structure at solid/liquidinterfaces
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aA
Hosokawa, S., Stellhorn, J.R., Ikemoto, H., Mimura, K.,
Wakita, K., Mamedov, N.
Lattice Distortions in TlInSe2 Thermoelectric Material Studied
by X-Ray Absorption Fine Structure
Phys. Status Solidi A 215, 1700416 (2018).
aA
Shiota, K., Nakamura, T., Takaoka, M., Aminuddin, S.F.,
Oshita, K., Fujimori, T.
Stabilization of lead in an alkali-activated municipal solid waste
incineration fly ash-Pyrophyllite-based system
J. Environ. Manage. 201, 327 (2017).
aA
Yu, Q., Ohnuki, T., Kozai, N., Sakamoto, F., Tanaka, K.,
Sasaki, K.
Quantitative analysis of radiocesium retention onto birnessite
and todorokite
Chem. Geol. 470, 141 (2017).

Takahashi, M., Koizumi, H., Chun, W.-J., Kori, M., Imaoka, T.,
Yamamoto, K.
Finely controlled multimetallic nanocluster catalysts forsolvent-free aerobic oxidation of hydrocarbons
Sci. Adv. 3, e1700101 (2017).
aA
Tatemizo, N., Imada, S., Miura, Y., Nishio, K., Isshiki, T.
Crystallographic and electronic properties of AlCrN films thatabsorb visible light
AIP Adv. 7, 055306 (2017).
aA
Tatemizo, N., Miura, Y., Nishio, K., Hirata, S., Sawa, F.,
Fukui, K., Isshiki, T., Imada, S.
Band structure and photoconductivity of blue-green lightabsorbing AlTiN films
J. Mater. Chem. A 5, 20824 (2017).
aA
Dias, E.T., Priolkar, K.R., Ranjan, R., Nigam, A.K., Emura, S.
Mechanism of magnetostructural transformation in
multifunctional Mn3GaC
J. Appl. Phys. 122, 103906 (2017).
aA
Ikemoto, H.
miXAFS : a program for X-ray absorption fine-structure data
analysis
J. Synchrotron Rad. 25, 618 (2018).
aA
Zhang, H., Kawamura, S., Tamba, M., Kojima, T.,
Yoshiba, M., Izumi, Y.
Is water more reactive than H2 in photocatalytic CO2
conversion into fuels using semiconductor catalysts under highreaction pressures?
J. Catal. 352, 452 (2017).
aA
Nakada, R., Tanaka, M., Tanimizu, M., Takahashi, Y.
Aqueous speciation is likely to control the stable isotopic
fractionation of cerium at varying pH
Geochim. Cosmochim. Acta 218, 273 (2017).
aA
Iwase A., Nozawa S., Adachi S., Kudo A.
Preparation of Mo- and W-Doped BiVO4 Fine Particles
Prepared by an Aqueous Route for Photocatalytic and
Photoelectrochemical O2 Evolution
J. Photochem. Photobiol. A-Chem. 353, 284 (2018).
aA
Yuan, Q., Takakusagi, S., Wakisaka, Y., Uemura, Y., Wada, T.,
Ariga, H., Asakura, K.
Polarization-dependent total reflection fluorescence X-ray
absorption fine structure (PTRF-XAFS) studies on the structureof a Pt monolayer on Au(111) prepared by the surface-limited
redox replacement reaction
Chem. Lett. 46, 1250 (2017).
aA
Muratsugu, S., Miyamoto, S., Sakamoto, K., Ichihashi, K.,
Kim, C.K., Ishiguro, N., Tada, M.
Size Regulation and Stability Enhancement of Pt Nanoparticle
Catalyst via Polypyrrole Functionalization of Carbon Nanotube
Supported Pt Tetranuclear Complex
Langmuir 33, 10271 (2017).
aA
Kubota, K., Yoda, Y., Komaba, S.
Origin of Enhanced Capacity Retention of P2-Type
Na2/3Ni1/3-xMn2/3CuxO2 for Na-Ion Batteries
J. Electrochem. Soc. 164, A2368 (2017).
aA
Hoshino, S., Glushenkov, A.M., Ichikawa, S., Ozaki, T.,
Inamasu, T., Yabuuchi, N.
Reversible Three-Electron Redox Reaction of Mo3+/Mo6+ for
Rechargeable Lithium Batteries
ACS Energy Lett. 2, 733 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Sato, K., Nakayama, M., Glushenkov, A.M., Mukai, T.,
Hashimoto, Y., Yamanaka, K., Yoshimura, M., Ohta, T.,
Yabuuchi, N.
Na-Excess Cation-Disordered Rocksalt Oxide:
Na1.3Nb0.3Mn0.4O2
Chem. Mater. 29, 5043 (2017).
aA
Nakajima, M., Yabuuchi, N.
Lithium-Excess Cation-Disordered Rocksalt-Type Oxide with
Nanoscale Phase Segregation: Li 1.25Nb0.25V0.5O2
Chem. Mater. 29, 6927 (2017).
aA
Takeda, N., Hoshino, S., Xie, L., Chen, S., Ikeuchi, I.,
Natsui, R., Nakura, K., Yabuuchi, N.
Reversible Li storage for nanosize cation/anion-disorderedrocksalt-type oxyfluorides: LiMoO2 - x LiF (0  x  2) binary
systemJ. Power Sources 367, 122 (2017).
aA
An L., Sasaki T., Weidler P.G., Wöll C., Ichikuni N., Onishi H.
Local Environment of Strontium Cations Activating NaTaO3
Photocatalysts
ACS Catalysis 8, 880 (2018).
aA
Qin, H.-B., Takeichi, Y., Nitani, H., Terada, Y., Takahashi, Y.
Tellurium Distribution and Speciation in Contaminated Soils
from Abandoned Mine Tailings: Comparison with Selenium
Environ. Sci. Technol. 51, 6027 (2017).
aA
Imaoka, T., Akanuma, Y., Haruta, N., Tsuchiya, S.,
Ishihara, K., Okayasu, T., Chun, W.-J., Takahashi, M.,
Yamamoto, K.
Platinum clusters with precise numbers of atoms for
preparative-scale catalysis
Nat. Commun. 8, 688 (2017).
aA
Yamamoto, Y., Suzuki, A., Tsutsumi, N., Katagiri, M.,
Yamashita, S., Niwa, Y., Katayama, M., Inada, Y.
In situ X-ray absorption fine structure analysis of redox
reactions of nickel species with variable particle sizes supported
on silica
J. Solid State Chem. 258, 264 (2018).
aA
Hayashi, K., Ohoyama, K., Happo, N., Matsushita, T.,
Hosokawa, S., Harada, M., Inamura, Y., Nitani, H.,
Shishido, T., Yubuta, K.
Multiple-wavelength neutron holography with pulsed neutrons
Sci. Adv. 3, e1700294 (2017).
aA
Zhao, X., Qiang, S., Wu, H., Yang, Y., Shao, D., Fang, L.,
Liang, J., Li, P., Fan, Q.
Exploring the Sorption Mechanism of Ni(II) on Illite: Batch
Sorption, Modelling, EXAFS and Extraction Investigations
Sci. Rep. 7, 8495 (2017).
aA
Xu, B., Kaneko, T., Shibuta, Y., Kato, T.
Preferential synthesis of (6,4) single-walled carbon nanotubes
by controlling oxidation degree of Co catalyst
Sci. Rep. 7, 11149 (2017).
aA
Gong, Y., Wu, J., Kitano, M., Wang, J., Ye, T.-N., Li, J.,
Kobayashi, Y., Kishida, K., Abe, H., Niwa, Y., Yang, H.,
Tada, T., Hosono, H.
Ternary intermetallic LaCoSi as a catalyst for N2 activation
Nat. Catal. 1, 178 (2018).
13A/B
Gill, T.G., Fleurence, A., Warner B., Prüser, H.,
Friedlein, R., Sadowski, J.T., Hirjibehedin, C.F.,
Yamada-Takamura, Y.
Metallic Atomically-Thin Layered Silicon Epitaxially Grown
on Silicene/ZrB2
2D Materials 4, 1 (2017).

Sugizaki, Y., Ozawa, K., Edamoto, K.
Growth of ultrathin titanium oxide films on Ag(110)Jpn. J. Appl. Phys. 56, 085501 (2017).
aA
Liu, R.-Y., Ogawa, Y., Chen, P., Ozawa, K., Suzuki, T.,
Okada, M., Someya, T., Ishida, Y., Okazaki, K., Shin, S.,
Chiang, T.-C., Matsuda, I.
Femtosecond to picosecond transient effects in WSe 2 observedby pump-probe angle-resolved photoemission spectroscopy
Sci. Rep. 7, 15981 (2017).
aA
Sugizaki, Y., Motoyama, H., Edamoto, K., Ozawa, K.
Electronic structure of Fe2P(10-10) studied by soft X-ray
photoelectron spectroscopy and X-ray absorption spectroscopy
Surf. Sci. 664, 50 (2017).
aA
Koitaya, T., Shiozawa, Y., Yoshikura, Y., Mukai, K.,
Yoshimoto, S., Torii, S., Muttaqien, F., Hamamoto, Y.,
Inagaki, K., Morikawa, Y., Yoshinobu, J.
Electronic states and growth modes of Zn atoms deposited on
Cu(111) studied by XPS, UPS and DFT
Surf. Sci. 663, 1 (2017).
aA
Mizuno, Y., Yamamoto, M., Kinjo, H., Mase, K., Ishii, H.,
Okudaira, K.K., Yoshida, H., Nakayama, Y.
Effects of the ambient exposure on the electronic states of theclean surface of the pentacene single crystal
Mol. Cryst. Liq. Cryst. 648, 216 (2017).
aA
Shiraishi, F., Hanzawa, Y., Okumura, T., Tomioka, N.,
Kodama, Y., Suga, H., Takahashi, Y., Kano, A.
Cyanobacterial exopolymer properties differentiate microbialcarbonate fabrics
Sci. Rep. 7, 11805 (2017).
aA
Takahashi, Y., Fan, Q., Suga, H., Tanaka, K., Sakaguchi, A.,
Takeichi, Y., Ono, K., Mase, K., Kato, K., Kanivets, V.V.
Comparison of solid-water partitions of radiocesium in riverwaters in Fukushima and Chernobyl areas
Sci. Rep. 7, 12407 (2017).
aA
Harano, T., Murao, R., Takeichi, Y., Kimura, M., Takahashi, Y.
Observation of Interface between Resin and Carbon Fiber by
Scanning Transmission X-ray Microscopy
J. Phys.: Conf. Ser. 849, 012023 (2017).
aA
Kaneyasu, T., Odagiri, T., Nakagawa, M., Mashiko, R.,
Tanaka, H., Adachi, J., Hikosaka, Y.
Single, double, and triple Auger decays from 1s shake-up statesof the oxygen molecule
J. Chem. Phys. 147, 104304 (2017).
aA
Aiura, Y., Ozawa, K., Hase, I., Bando, K., Haga, H.,
Kawanaka, H., Samizo, A., Kikuchi, N., Mase, K.
Disappearance of Localized Valence Band Maximum of
Ternary Tin Oxide with Pyrochlore Structure, Sn2Nb2O7
J. Phys. Chem. C 121, 9480 (2017).
aA
Ienaga, K., Iimori, T., Yaji, K., Miyamachi, T., Nakashima, S.,
Takahashi, Y., Fukuma, K., Hayashi, S., Kajiwara, T.,
Visikovskiy, A., Mase, K., Nakatsuji, K., Tanaka, S.,
Komori, F.
Modulation of Electron-Phonon Coupling in OneDimensionally Nanorippled Graphene on a Macrofacet of
6H-SiC
Nano Lett. 17, 3527 (2017).
aA
Ueno, T., Hashimoto, A., Takeichi, Y., Ono, K.
Quantitative magnetic-moment mapping of a permanentmagnet material by X-ray magnetic circular dichroism nanospectroscopy
AIP Adv. 7, 056804 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Ueno, T., Hino, H., Hashimoto, A., Takeichi, Y., Sawada, M.,
Ono, K.
Adaptive design of an X-ray magnetic circular dichroism
spectroscopy experiment with Gaussian process modeling
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aA
Toyoshima, R., Hiramatsu, N., Yoshida, M., Amemiya, K.,
Mase, K., Mun, B.S., Kondoh, H.
Catalytic CO oxidation over Pd70Au30(111) alloy surfaces:
spectroscopic evidence for Pd ensemble dependent activity
Chem. Commun. 53, 12657 (2017).
aA
Koitaya, T., Shiozawa, Y., Yoshikura, Y., Mukai, K.,
Yoshimoto, S., Yoshinobu, J.
Systematic study of adsorption and the reaction of methanol on
three model catalysts: Cu(111), Zn-Cu(111) and oxidized ZnCu(111)
J. Phys. Chem. C 121, 25402 (2017).
aA
Yoshimoto, S., Miyahara, R., Yoshikura, Y. Tang, J.,
Mukai, K., Yoshinobu, J.
Initial gas exposure effects on monolayer pentacene field-effecttransistor studied using four gallium indium probes
Org. Electron. 54, 34 (2018).
aA
Mizushima, H., Koike, H., Kuroda, K., Ishida, Y.,
Nakayama, M., Mase, K., Kondo, T., Shin, S., Kanai, K.
Effect of physisorption of inert organic molecules on Au(111)
surface electronic states
Phys. Chem. Chem. Phys. 19, 18646 (2017).
aA
Jeong, B. Jeon, H., Toyoshima, R., Crumlin, E.J., Kondoh, H.,
Mun B.S., Lee, J.
Dehydration Pathway for the Dissociation of Gas-Phase Formic
Acid on Pt(111) Surface Observed via Ambient-Pressure XPS
J. Phys. Chem. C 122, 2064 (2018).
aA
Yu, Y., Koh, Y.E., Lim, H., Jeong, B., Isegawa, K., Kim, D.,
Ueda, K., Kondoh, H., Mase, K., Crumlin, E.J., Ross, P.N.,
Gallet, J.-J., Bournel, F., Mun, B.S.
Chemical states of surface oxygen during CO oxidation on
Pt (1 1 0) surface revealed by ambient pressure XPS
J. Phys.: Condens. Matter. 29, 464001 (2017).
aA
Ozawa, K., Kakubo, T., Amino, N., Mase, K., Ikenaga, E.,
Nakamura, T.
Angle-Resolved HAXPES Investigation on the Chemical
Origin of Adhesion between Natural Rubber and Brass
Langmuir 33, 9582 (2017).
aA
Suga, H., Kikuchi, S., Takeichi, Y., Miyamoto, C.,
Miyahara, M., Mitsunobu, S., Ohigashi, T., Mase, K., Ono, K.,
Takahashi, Y.
Spatially Resolved Distribution of Fe Species around Microbes
at the Submicron Scale in Natural Bacteriogenic Iron Oxides
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aA
Hayashi, S., Visikovskiy, A., Kajiwara, T., Iimori, T.,
Shirasawa, T., Nakastuji, K., Miyamachi, T., Nakashima, S.,
Yaji, K., Mase, K., Komori, F., Tanaka, S.
Triangular lattice atomic layer of Sn(1 × 1) atgraphene/SiC(0001) interface
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aA
Chan, Q.H.S., Zolensky, M.E., Kebukawa, Y., Fries, M.,
Ito, M., Steele, A., Rahman, Z., Nakato, A., Kilcoyne, A.L.D.,
Suga, H., Takahashi, Y., Takeichi, Y., Mase, K.
Organic matter in extraterrestrial water-bearing salt crystals
Sci. Adv. 4, eaao3521 (2018).

Hasegawa, Y., Minami, H., Kanada, S., Yamada, Y.,
Sasaki, M., Hosokai, T. Nakanotani, H., Adachi, C.
Well-ordered films of disk-shaped thermally activated delayed
fluorescence molecules
J. Photonics Energy 8, 032110 (2018).
aA
Hasegawa, Y., Yamada, Y., Sasaki, M., Hosokai, T.
Nakanotani, H., Adachi, C.
Well-Ordered 4CzIPN ((4s,6s)-2,4,5,6-Tetra(9-H-carbazol-9yl)isophthalonitrile) Layers: Molecular Orientation, Electronic
Structure, and Angular Distribution of Photoluminescence
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14A
Inoue, K., Kobayashi Y., Yoda Y., Koshimizu M., Nishikido F.,
Haruki R., Kishimoto S.
Measurement of nuclear resonant scattering on 61Ni with fast
scintillation detector using proportional-mode silicon avalanche
photodiodeNucl. Instrum. Methods Phys. Res. A 880, 87 (2018).
aA
Hiyama, F., Noguchi, T., Koshimizu, M., Kishimoto, S.,
Haruki, R., Nishikido, F., Yanagida, T., Fujimoto, Y., Aida, T.,
Takami, S., Adschiri, T., Asai, K.
X-ray detection capabilities of plastic scintillators incorporated
with hafnium oxide nanoparticles surface-modified with phenyl
propionic acid
Jpn. J. Appl. Phys. 57, 012601 (2018).
14B
aA
Miyoshi, T., Arai, Y., Fujita, Y., Hara, K., Ikegami, Y.,
Kurachi, I., Tauchi, K., Tsuboyama, T., Yamada, M., Ono, S.,
Nishimura, R., Hamasaki, R.
Front-end electronics of double SOI X-ray imaging sensors
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Aa
Yao, Y., Ishikawa, Y., Sugawara, Y., Takahashi, Y., Hirano, K.
Elementary screw and mixed-type dislocations in 4H-SiC
characterized by X-ray topography taken with six equivalent
11-28 G-vectors and a comparison to etch pit evaluation
Mater. Sci. Forum 897, 185, (2017).
aA
Hayakawa, Y., Hayakawa, K., Kaneda, T., Nogami, K.,
Sakae, T., Sakai, T., Sato, I., Takahashi, Y., Tanaka, T.
Simultaneous K-edge subtraction tomography for tracingstrontium using parametric X-ray radiation
Nucl. Instrum. Methods Phys. Res. B 402, 228 (2017).
aA
Shimao, D., Sunaguchi, N., Sasaya, T., Yuasa, T., Ichihara, S.,
Kawasaki, T., Ando, M.
Imaging with ultra-small-angle X-ray scattering using a
Laue-case analyzer and its application to human breast tumors
Physica Medica 44, 236 (2017).
aA
Okamoto, H., Mizuno, K., Fujimori, A., Morikawa, K.
Diffraction condition dependence of refraction angle resolutionin X-ray refraction contrast imaging method
Journal of Wellness and Health Care 41, 167 (2017).
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Mizuno, K., Ikeya, H., Inoue, K., Fujimori, A., Okamoto, H.
Determination of minimum detectable refraction angle in X-ray
diffraction-enhanced imaging via standard test piece
Jpn. J. Appl. Phys. 56, 066601 (2017).
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Jiang, J., Hirano, K., Sakurai, K.
Interface-sensitive imaging by an image reconstruction aided
X-ray reflectivity technique
J. Appl. Cryst. 50, 712 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
14C
Wu, Y., Takano, H., Momose, A.
In-situ observation of polymer blend phase separation by x-ray
Talbot-Lau interferometer
Proceedings of SPIE - The International Society for OpticalEngineering 10391, 103910E (2017).
aA
Osaka, M., Ishikawa, A., Yamada, S., Uwabe, C., Imai, H.,
Matsuda, T., Yoneyama, A., Takeda, T., Takakuwa, T.
Positional changes of the ocular organs during craniofacial
development
Anatomical Record 300, 2107 (2017).
aA
Okumura, M., Ishikawa, A., Aoyama, T., Yamada, S.,
Uwabe, C., Imai, H., Matsuda, T., Yoneyama, A., Takeda, T.,
Takakuwa, T.
Cartilage Formation in the Pelvic Skeleton during the
Embryonic and Early-Fetal Period
PLoS ONE 12, e0173852 (2017).
Former 14C2
Suzuki, A.
P-V-T equation of state of rhodium oxyhydroxide
High Pressure Res. 38, 145 (2018).
15A1
Kimura, M., Takeichi, Y., Murao, R., Obayashi, I., Hiraoka, Y.,
Liu, Y.
Chemical state mapping of heterogeneous reduction of iron ore
sinterJ. Phys.: Conf. Ser. 849, 012015 (2017).
aA
Kimura, M., Obayashi, I., Takeichi, Y., Murao, R., Hiraoka, Y.
Non-empirical identification of trigger sites in heterogeneous
processes using persistent homology
Sci. Rep. 8, 3553 (2018).
aA
Konishi, H., Hirano, T., Takamatsu, D., Gunji, A., Feng, X.,
Furutsuki, S., Okumura, T., Terada, S., Tamura, K.
Mechanisms responsible for two possible electrochemical
reactions in Li1.2Ni0.13Mn0.54Co0.13O2 used for lithium ion
batteries
J. Solid State Chem. 258, 225 (2018).
aA
Qin, H.-B., Takeichi, Y., Nitani, H., Terada, Y., Takahashi, Y.
Tellurium Distribution and Speciation in Contaminated Soils
from Abandoned Mine Tailings: Comparison with Selenium
Environ. Sci. Technol. 51, 6027 (2017).
aA
Kimura, M.
Recent Investigations of Structural Materials Using
Synchrotron Radiation
Synchrotron Radiat. News 30, 23 (2017).
aA
Kim, D.-W., Shiiba, H., Zettsu, N., Yamada, T., Kimijima, T.,S´anchez-Santolino, G., Ishikawa, R., Ikuhara, Y., Teshima, K.
Full picture discovery for mixed-fluorine anion effects on
high-voltage spinel lithium nickel manganese oxide cathodes
NPG Asia Materials 9, e398 (2017).
aA
Bernadó, P., Shimizu, N., Zaccai, G., Kamikubo, H.,
Sugiyama, M.
Solution scattering approaches to dynamical ordering inbiomolecular systems.
Biochim. Biophys. Acta-Gen. Subjects 1862, 253 (2018).

Shibuta, S., Imamura, H., Nishikawa, K., Morita, T.
Fluctuational parameters based on the Bhatia-Thornton theory
for supercritical solutions: Application to a supercriticalaqueous solution of n-pentane
Chem. Phys. 487, 30 (2017).
aA
Takagi, H., Hashimoto, R., Igarashi, N., Kishimoto, S.,
Yamamoto, K.
Frank-Kasper σ phase in polybutadiene-poly(ε-caprolactone)
diblock copolymer/polybutadiene blends
J. Phys.: Condens. Matter. 29, 204002 (2017).
aA
Takagi, H., Hashimoto, R., Igarashi, N., Kishimoto, S.,
Yamamoto, K.
Synchrotron SAXS Studies on Lattice Structure of Spherical
Micelles in Binary Mixtures of Block Copolymers andHomopolymers
J. Fiber Sci. Technol. 74, 10 (2018).
aA
Oda, K., Oda, T., Matoba, Y., Sato, M., Irie, T., Sakaguchi, T.
Structural analysis of the STAT1:STAT2 heterodimer revealed
the mechanism of Sendai virus C protein-mediated blockade oftype 1 interferon signaling
J.Biol.Chem. 292, 19752 (2017).
Former 15A
Hishida M.
n-アルカン添加によるリン脂質二重膜の硬化とベシクルの破裂
C&I Commun. 42, 30 (2017).
aA
Takagi, H., Takasaki, T., Yamamoto, K.
Phase Diagram for Block Copolymer and Homopolymer
Blends: The Phase Boundary of the Ordered Bicontinuous
Double Diamond Network Structure
J. Nanosci. Nanotechnol. 17, 9009 (2017).
Former 15B
Shirasawa, T., Yanagisawa, S., Hatada, S.-N., Voegeli, W.,
Morikawa, Y., Takahashi, T
A New Pentacene Polymorph Induced by Interaction with aBi(0001) Substrate
J. Phys. Chem. C 122, 6240 (2018).
Former 15B2
Takahashi, T., Yamaguchi, Y., Shirasawa, T., Voegeli, W.,
Tajiri, H.
Evidence for a gold trimer on theSi(111)- 21 x  21-(Ag + Au) surface
Appl. Surf. Sci. 432, 147 (2018).
16A
Hikosaka, Y., Kaneyasu, T., Lablanquie, P., Penent, F., Ito, K.
Single and multiple Auger decay processes from theNe+ 1s-12 p-1np shake-up states studied with a multielectron
coincidence method
Phys. Rev. A 97, 023405 (2018).
aA
Sudayama, T., Nakao, H., Yamasaki, Y., Murakami, Y.,
Asai, S., Okazaki, R., Yasui, Y., Terasaki, I.
Spin State of Co3+ in LaCo1-xRhxO3 Studied Using X-ray
Absorption Spectroscopy
J. Phys. Soc. Jpn. 86, 094701 (2017).
aA

15A2
Ogawa, T., Saijo, S., Shimizu, N., Jiang, X., Hirokawa, N.
Mechanism of Catalytic Microtubule Depolymerization via
KIF2-Tubulin Transitional Conformation
Cell Rep. 20, 2626 (2017).
aA
aA

Photon Factory Activity Report 2017 #35 (2018) B
Shibata, G., Kitamura, M., Minohara, M., Yoshimatsu, K.,
Kadono, T., Ishigami, K., Harano, T., Takahashi, Y.,
Sakamoto, S., Nonaka, Y., Ikeda, K., Chi, Z., Furuse, M.,
Fuchino, S., Okano, M., Fujihira, J., Uchida, A.,
Watanabe, K., Fujihira, H., Fujihira, S., Tanaka, A.,
Kumigashira, H., Koide, T., Fujimori, A.
Anisotropic spin-density distribution and magnetic anisotropyof strained La1−xSrxMnO3 thin films: angle-dependent x-ray
magnetic circular dichroism
npj Quantum Mater. 3, 3 (2018).
aA
Tezuka, Y., Yokouchi, Y., Sasaki, S., Nakamoto, S.,
Nishiyama, K., Mikami, M., Im, H.J., Watanabe, T.,
Nozawa, S., Nakajima, N., Iwazumi, T.
Electronic structure study of CaCu3Ti4O12 by means of X-ray
Raman scattering
J. Electron. Spectrosc. Relat. Phenom. 220, 114 (2017).
aA
Ikeda, K., Seki, T., Shibata, G., Kadono, T., Ishigami, K.,
Takahashi, Y., Horio, M., Sakamoto, S., Nonaka, Y.,
Sakamaki, M., Amemiya, K., Kawamura, N., Suzuki, M.,
Takahashi, K., Fujimori, A.
Magnetic anisotropy of L10-ordered FePt thin films studied by
Fe and Pt L2,3-edges x-ray magnetic circular dichroism
Appl. Phys. Lett. 111, 142402 (2017).
aA
Sakamoto, S., Srinivasan, K., Zhang, R., Krupin, O., Ikeda, K.,
Shibata, G., Nonaka, Y., Chi, Z., Sakamaki, M., Amemiya, K.,
Fujimori, A., Ajan, A.
Effects of cobalt substitution in L10-(Fe,Co)Pt thin films
Phys. Rev. B 96, 144437 (2017).
aA
Kaneyasu, T., Odagiri, T., Nakagawa, M., Mashiko, R.,
Tanaka, H., Adachi, J., Hikosaka, Y.
Single, double, and triple Auger decays from 1s shake-up statesof the oxygen molecule
J. Chem. Phys. 147, 104304 (2017).
aA
Latiff, H., Kishimoto, M., Sharmin, S., Kita, E.,
Yanagihara, H., Nakagawa, T.
Enhanced Anisotropy in Tetragonalized (Cu, Co) Fe 2O4
Particles via the Jahn-Teller Effect of Cu2+ IonsIEEE Transactions on Magnetics 53, 1 (2017).
aA
Ukleev, V., Yamasaki, Y., Morikawa, D., Kanazawa, N.,
Okamura, Y., Nakao, H., Tokura, Y., Arima, T.
Coherent Resonant Soft X-ray Scattering Study of Magnetic
Textures in FeGe
Quantum Beam Sci. 2, 3 (2018).
aA
Okamura, Y., Yamasaki, Y., Morikawa, D., Honda, T.,
Ukleev, V., Nakao, H., Murakami, Y., Shibata, K., Kagawa, F.,
Seki, S., Arima, T., Tokura, Y.
Emergence and magnetic-field variation of chiral-soliton latticeand skyrmion lattice in the strained helimagnet Cu 2OSeO3
Phys. Rev. B 96, 174417 (2017).
aA
Okamura, Y., Yamasaki, Y., Morikawa, D., Honda, T.,
Ukleev, V., Nakao, H., Murakami, Y., Shibata, K., Kagawa, F.,
Seki, S., Arima, T., Tokura, Y.
Directional electric-field induced transformation from skyrmion
lattice to distinct helices in multiferroic Cu 2OSeO3
Phys. Rev. B 95, 184411 (2017).
aA
Sakamaki, M., Amemiya, K.
Nanometer-resolution depth-resolved measurement offlorescence-yield soft x-ray absorption spectroscopy for FeCo
thin film
Rev. Sci. Instrum. 88, 083901 (2017).

Matsumoto, M., Sharmin, S., Inoue, J., Kita, E.,
Yanagihara, H.
Large Negative Uniaxial Magnetic Anisotropy in Epitaxially
Strained Nickel Ferrite Films
IEEE Transactions on Magnetics 53, 2503604 (2017).
aA
Hirohata, A., Huminiuc, T., Sinclair, J., Wu, H.,
Samiepour, M., Vallejo-Fernandez, G., O'Grady, K., Balluf, J.,
Meinert, M., Reiss, G., Simon, E., Khmelevskyi, S.,
Szunyogh, L., Díaz, R.Y., Nowak, U., Tsuchiya, T.,
Sugiyama, T., Kubota, T., Takanashi, K., Inami, N., Ono, K.
Development of antiferromagnetic Heusler alloys for the
replacement of iridium as a critically raw material
J. Phys. D: Appl. Phys. 50, 443001 (2017).
Former 16B
Hikosaka, Y., Kaneyasu, T., Lablanquie, P., Penent, F., Ito, K.
Single and multiple Auger decay processes from theNe+ 1s-12 p-1np shake-up states studied with a multielectron
coincidence method
Phys. Rev. A 97, 023405 (2018).
17A
Fushinobu, S.
Crystal structures of carbohydrate-active enzymes withpotential for practical oligosaccharide synthesis
Int. J. Microgravity Sci. Appl. 34, 340109 (2017).
aA
Kita, A., Jimbo, M., Sakai, R., Morimoto, Y., Takeuchi, R.,
Tanaka, H., Takahashi, T., Miki, K.
Crystal structure of octocoral lectin SLL-2 complexed with
Forssman antigen tetrasaccharide
Glycobiology 27, 696 (2017).
aA
Shi, X., Miyakawa, T., Nakamura, A., Hou, F., Hibi, M.,
Ogawa, J., Kwon, Y., Tanokura, M.
Engineering a short-chain dehydrogenase/reductase for thestereoselective production of (2S,3R,4S)-4-hydroxyisoleucine
with three asymmetric centersSci. Rep. 7, 13703 (2017).
aA
Hirai, H., Yasui, N., Yamashita, K., Tabata, S., Yamamoto, M.,
Takagi, J., Nogi, T.
Structural basis for ligand capture and release by the endocytic
receptor ApoER2
EMBO Rep. 18, 982 (2017).
aA
Roppongi, S., Suzuki, Y., Tateoka, C., Fujimoto, M.,
Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y.,
Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Crystal structures of a bacterial dipeptidyl peptidase IV reveal anovel substrate recognition mechanism distinct from that of
mammalian orthologues
Sci. Rep. 8, 2714 (2018).
aA
Sato, M., Liebschner, D., Yamada, Y., Matsugaki, N.,
Arakawa, T., Wills, S.S., Hattie, M., Stubbs, K.A., Ito, T.,
Senda, T., Ashida, H., Fushinobu, S.
The first crystal structure of a family 129 glycoside hydrolasefrom a probiotic bacterium reveals critical residues and metal
cofactors
J. Biol. Chem. 292, 12126 (2017).
aA
Shojima, T., Hou, F., Takahashi, Y., Matsumura, Y., Okai, M.,
Nakamura, A., Mizuno, K., Inaba, K., Kojima, M.,
Miyakawa, T., Tanokura, M.
Crystal structure of a Ca2+-dependent regulator of flagellar
motility reveals the open-closed structural transition
Sci. Rep. 8, 2014 (2018).

Photon Factory Activity Report 2017 #35 (2018) B
Roppongi, S., Tateoka, C., Fujimoto, M., Iizuka, I.,
Morisawa, S., Nakamura, A., Honma, N., Suzuki, Y., Shida, Y.,
Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Periplasmic form of dipeptidyl aminopeptidase IV from
Pseudoxanthomonas mexicana WO24: purification, kinetic
characterization, crystallization and X-ray crystallographic
analysis
Acta Crystallogr. F-Struct. Biol. Commun. 73, 601 (2017).
aA
Yamada, C., Gotoh, A., Sakanaka, M., Hattie, M.,
Stubbs, K.A., Katayama-Ikegami, A., Hirose, J., Kurihara, S.,
Arakawa, T., Kitaoka, M., Okuda, S., Katayama, T.,
Fushinobu, S.
Molecular insight into evolution of symbiosis between
breast-fed infants and a member of the human gut microbiome
Bifidobacterium longum
Cell Chem. Biol. 24, 515 (2017).
aA
Kanazawa, H., Baba, F., Koganei, M., Kondo, J.
A structural basis for the antibiotic resistance conferred by an
N1-methylation of A1408 in 16S rRNA
Nucl. Acids Res. 45, 12529 (2017).
aA
Taguchi, H., Xie, Y., Horikoshi, N., Maehara, K., Harada, A.,
Nogami, J., Sato, K., Arimura, Y., Osakabe, A., Kujirai, T.,
Iwasaki, T., Semba, Y., Tachibana, T., Kimura, H.,
Ohkawa, Y., Kurumizaka, H.
Crystal Structure and Characterization of Novel Human
Histone H3 Variants, H3.6, H3.7, and H3.8
Biochemistry 56, 2184 (2017).
aA
Yasutake, Y., Kusada, H., Ebuchi, T., Hanada, S.,
Kamagata, Y., Tamura, T., Kimura, N.
Bifunctional quorum-quenching and antibiotic-acylase MacQ
forms a 170-kDa capsule-shaped molecule containing spacer
polypeptides
Sci. Rep. 7, 8946 (2017).
aA
Yamashita, T., Inaoka, D.K., Shiba, T., Oohashi, T., Iwata, S.,
Yagi, T., Kosaka, H., Miyoshi, H., Harada, S., Kita, K.,
Hirano, K.
Ubiquinone binding site of yeast NADH dehydrogenase
revealed by structures binding novel competitive- andmixed-type inhibitors
Sci. Rep. 8, 2427 (2018).
aA
Nakamura, F., Kudo, N., Tomachi, Y., Nakata, A.,
Takemoto, M., Ito, A., Tabei, H., Arai, D.,
Voogd, N. de, Yoshida, M., Nakao, Y., Fusetani, N.
Halistanol sulfates I and J, new SIRT1-3 inhibitory steroid
sulfates from a marine sponge of the genus Halichondria
J. Antibiot. 71, 273 (2018).
aA
Ogawa, T., Saijo, S., Shimizu, N., Jiang, X., Hirokawa, N.
Mechanism of Catalytic Microtubule Depolymerization via
KIF2-Tubulin Transitional Conformation
Cell Rep. 20, 2626 (2017).
aA
Granell, M., Namura, M., Alvira, S., Kanamaru, S.,
van Raaij, M.J.
Crystal structure of the carboxy-terminal region of thebacteriophage T4 proximal long tail fiber protein Gp34
Viruses 9, 168 (2017).
aA
Terada, D., Voet, A.R.D., Noguchi, H., Kamata, K., Ohki, M.,
Addy, C., Fujii, Y., Yamamoto, D., Ozeki, Y., Tame, J.R.H.,
Zhang, K.Y.J.
Computational design of a symmetrical -trefoil with cancer
cell binding activity

Matsui, T., Kodama, T., Mori, T., Tadakoshi, T., Noguchi, H.,
Abe, I., Morita, H.
2-Alkylquinolone alkaloid biosynthesis in the medicinal plant
Evodia rutaecarpa involves collaboration of two novel type III
polyketide synthases
J. Biol. Chem. 292, 9117 (2017).
aA
Jang, J.Y., Koh, M., Bae, H., An, D.R., Im, H.N., Kim, H.S.,
Yoon, J.Y., Yoon, H.-J., Han, B.W., Park, S.B., Suh, S.W.
Structural basis for differential activities of enantiomeric
PPARγ agonists: Binding of S35 to the alternate site
Biochim. Biophys. Acta - Proteins and Proteomics 1865, 674(2017).
aA
Amamoto, Y., Aoi, Y., Nagashima, N., Suto, H.,
Yoshidome, D., Arimura, Y., Osakabe, A., Kato, D.,
Kurumizaka, H., Kawashima, S.A., Yamatsugu, K., Kanai, M.
Synthetic Posttranslational Modifications: Chemical
Catalyst-Driven Regioselective Histone Acylation of Native
Chromatin
J. Am. Chem. Soc. 139, 7568 (2017).
aA
Kato, D., Osakabe, A., Arimura, Y., Mizukami, Y.,
Horikoshi, N., Saikusa, K., Akashi, S., Nishimura, Y.,
Park, S.-Y., Nogami, J., Maehara, K., Ohkawa, Y.,
Matsumoto, A., Kono, H., Inoue, R., Sugiyama, M.,
Kurumizaka, H.
Crystal structure of the overlapping dinucleosome composed ofhexasome and octasome
Science 356, 205 (2017).
aA
Oda, T., Hirabayashi, H., Shikauchi, G., Takamura, R.,
Hiraga, K., Minami, H., Hashimoto, H., Yamamoto, M.,
Wakabayashi, K., Shimizu, T., Sato, M.
Structural basis of autoinhibition and activation of the
DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem. 292, 15445 (2017).
aA
Yasutake, Y., Kameda, T., Tamura, T.
Structural insights into the mechanism of the drastic changes inenzymatic activity of the cytochrome P450 vitamin D3hydroxylase (CYP107BR1) caused by a mutation distant fromthe active site
Acta Crystallogr. F-Struct. Biol. Commun. 73, 266 (2017).
aA
Nakashima, Y., Mori, T., Nakamura, H., Awakawa, T.,
Hoshino, S., Senda, M., Senda, T., Abe, I.
Structure function and engineering of multifunctional non-heme
iron dependent oxygenases in fungal meroterpenoid
biosynthesis
Nat. Commun. 9, 104 02371 (2018).
aA
Hara, K., Taharazako, S., Ikeda, M., Fujita, H., Mikami, Y.,
Kikuchi, S., Hishiki, A., Yokoyama, H., Ishikawa, Y.,
Kanno, S.-I., Tanaka, K., Hashimoto, H.
Dynamic feature of mitotic arrest deficient 2-like protein 2(MAD2L2) and structural basis for its interaction withchromosome alignment-maintaining phosphoprotein (CAMP).
J. Biol. Chem. 292, 17658 (2017).
Aa
Terawaki, S., Fujita, S., Katsutani, T., Shiomi, K.,
Keino-Masu, K., Masu, M., Wakamatsu, K., Shibata, N.,
Higuchi, Y.
Structural basis for Ccd1 auto-inhibition in the Wnt pathway
through homomerization of the DIX domain
Sci. Rep. 7, 7739 (2017).

Sci. Rep. 7, 5943 (2017).

Ikemoto, K., Kobayashi, R., Sato, S., Isobe, H.
Synthesis and Bowl-in-Bowl Assembly of a Geodesic
Phenylene Bowl
Angew. Chem. Int. Ed. 56, 6511 (2017).

aA

aA

Photon Factory Activity Report 2017 #35 (2018) B
Ikemoto, K., Kobayashi, R., Sato, S., Isobe, H.
Entropy-Driven Ball-in-Bowl Assembly of Fullerene andGeodesic Phenylene Bowl
Org. Lett. 19, 2362 (2017).
aA
Mori, T., Iwabuchi, T., Hoshino, S., Wang, H., Matsuda, Y.,
Abe, I.
Molecular basis for the unusual ring reconstruction in fungal
meroterpenoid biogenesis
Nat. Chem. Biol. 13, 1066 (2017).
aA
Kawai, A., Chuang, V.T.G., Kouno, Y., Yamasaki, K.,
Miyamoto, S., Anraku, M., Otagiri, M.
Crystallographic analysis of the Ternary Complex of Octanoate
and N-acetyl-L-methionine with Human Serum Albumin
Reveals the Mode of their Stabilizing Interactions
Biochim. Biophys. Acta - Proteins and Proteomics 1865, 979(2017).
aA
Kato, A., Yamao, M., Hashihara, Y., Ishida, H., Itoh, T.,
Yamamoto, K.
Vitamin D Analogues with a p-Hydroxyphenyl Group at the
C25 Position: Crystal Structure of Vitamin D Receptor
Ligand-Binding Domain Complexed with the Ligand Explains
the Mechanism Underlying Full Antagonistic Action
J. Med. Chem. 60, 8394 (2017).
aA
Yasutake, Y., Hattori, S., Hayashi, H., Matsuda, K.,
Tamura, N., Kohgo, S., Maeda, K., Mitsuya, H.
HIV-1 with HBV-associated Q151M substitution in RT
becomes highly susceptible to entecavir: structural insights into
HBV-RT inhibition by entecavirSci. Rep. 8, 1624 (2018).
aA
Chen, M., Kato, K., Kubo, Y., Tanaka, Y., Liu, Y., Long, F.,
Whitman, W.B., Lill, P., Gatsogiannis, C., Raunser, S.,
Shimizu, N., Shinoda, A., Nakamura, A., Tanaka, I., Yao, M.
Structural basis for the tRNA-dependent cysteine biosynthesis
Nat. Commun. 8, 1521 (2017).
aA
Kinoshita, T., Hashimoto, T., Sogabe, Y., Fukada, H.,
Matsumoto, T., Sawa, M.
High-resolution structure discloses the potential for allosteric
regulation of mitogen-activated protein kinase kinase 7
Biochem. Biophys. Res. Commun. 493, 313 (2017).
aA
Tomita, T., Kobayashi, M., Karita, Y., Yasuno, Y., Shinada, T.,
Nishiyama, M., Kuzuyama, T.
Structure and Mechanism of the Monoterpene Cyclolavandulyl
Diphosphate Synthase that Catalyzes Consecutive
Condensation and Cyclization
Angew. Chem. Int. Ed. 56, 14913 (2017).
aA
Jo, C.H., Son, J., Kim, S., Oda, T., Kim, J., Lee, M.-R.,
Sato, M., Kim, H.T., Unzai, S., Park, S.-Y., Hwang, K.Y.
Structural insights into a 20.8-kDa tegumental-allergen-like(TAL) protein from Clonorchis sinensis
Sci. Rep. 7, 1764 (2017).
aA
Ohnuma, T., Taira, T., Umemoto, N., Kitaoku, Y., Sorlie, M.,
Numata, T., Fukamizo, T.
Crystal structure and thermodynamic dissection of chitin
oligosaccharide binding to the LysM module of chitinase-A
from Pteris ryukyuensis.
Biochem. Biophys. Res. Commun. 494, 736 (2017).
aA
Kwon, D.H., Kim, L., Kim, B.-W., Kim, J.H., Roh, K.-H.,
Choi, E.-J., Song, H.K.
A novel conformation of the LC3-interacting region motif
revealed by the structure of a complex between LC3B and
RavZ
Biochem. Biophys. Res. Commun. 490, 1093 (2017).
aA

Kawai, A., Yamasaki, K., Enokida, T., Miyamoto, S.,
Otagiri, M.
Crystal structure analysis of human serum albumin complexedwith sodium 4-phenylbutyrate
Biochem. Biophys. Rep. 13, 78 (2018).
aA
Wong, C.P., Awakawa, T., Nakashima, Y., Mori, T., Zhu, Q.,
Liu, X., Abe, I.
Two Distinct Substrate Binding Modes for the Normal andReverse Prenylation of Hapalindoles by the Prenyltransferase
AmbP3
Angew. Chem. Int. Ed. 57, 560 (2018).
aA
Harada, A., Kamimura, N., Takeuchi, K., Yu, H.Y., Masai, E.,
Senda, T.
The crystal structure of a new O-demethylase from
Sphingobium sp. strain SYK-6
FEBS J. 284, 1855 (2017).
aA
Ha, J.-H., Eo, Y., Ahn, H.-C., Ryu, K.-S.
Increasing the soluble expression and crystallization of the
Escherichia coli quorum-sensing protein LsrK
Acta Crystallogr. F-Struct. Biol. Commun. 73, 253 (2017).
aA
Koyama, M., Matsuura, Y.
Crystal structure of importin-3 bound to the nuclear
localization signal of Ran-binding protein 3
Biochem. Biophys. Res. Commun. 491, 609 (2017).
aA
Zhang, Z., Zhao, M., Wang, L., Chen, Y., Dong, Y., Gong, Y.,
Huang, L.
Roles of Leu28 side chain intercalation in the interaction
between Cren7 and DNA
Biochem. J. 474, 1727 (2017).
aA
Ho, T.-H., Hong, M.-K., Kim, S., Kim, J.-G., Lee, J., Jung, K.,
Lee, I., Choi, M., Park, H., Lee, S., Ahn, Y.-J., Kang, L.-W.
Transcriptional expression of aminoacyl tRNA synthetase
genes of Xanthomonas oryzae pv. oryzae (Xoo) on rice-leaf
extract treatment and crystal structure of Xoo glutamyl-tRNA
synthetase
Crop Pasture Sci. 68, 434 (2017).
aA
Hwang, E., Cheong, H.-K., Kim, S.-Y., Kwon, O., Blain, K.Y.,
Choe, S., Yeo, K.J., Jung, Y.W., Jeon, Y.H., Cheong, C.
Crystal structure of the EnvZ periplasmic domain with CHAPSFEBS Lett. 591, 1419 (2017).
aA
Motoyama, K., Unno, H., Hattori, A., Takaoka, T., Ishikita, H.,
Kawaide, H., Yoshimura, T., Hemmi, H.
A Single Amino Acid Mutation Converts (R)-5Diphosphomevalonate Decarboxylase into a Kinase
J. Biol. Chem. 292, 2457 (2017).
aA
Komoda, K., Narita, M., Yamashita, K., Tanaka, I., Yao, M.
Asymmetric trimeric ring structure of the nucleocapsid proteinof Tospovirus
J. Virol. 91, e01002-17 (2017).
aA
Yamashita, S., Takagi, Y., Nagaike, T., Tomita, K.
Crystal structures of U6 snRNA-specific terminal
uridylyltransferase
Nat. Commun. 8, 15788 (2017).
aA
Feng, J., Fu, S., Cao, X., Wu, H., Lu, J., Zeng, M., Liu, L.,
Yang, X., Shen, Y.
Synaptonemal complex protein 2 (SYCP2) mediates theassociation of the centromere with the synaptonemal complex
Protein Cell 8, 538 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Lu, G., Xu, Y., Zhang, K., Xiong, Y., Li, H., Cui, L., Wang, X.,
Lou, J., Zhai, Y., Sun, F., Zhang, X.C.
Crystal structure of E. coli apolipoprotein N-acyl transferase
Nat. Commun. 8, 15948 (2017).
aA
Sheng, G., Gogakos, T., Wang, J., Zhao, H., Serganov, A.,
Juranek, S., Tuschl, T., Patel, D.J., Wang, Y.
Structure/cleavage-based insights into helical perturbations atbulge sites within T. thermophilus Argonaute silencing
complexes
Nucl. Acids Res. 45, 9149 (2017).
aA
Hayashi, T., Senda, M., Suzuki, N., Nishikawa, H., Ben, C.,
Tang, C., Nagase, L., Inoue, K., Senda, T., Hatakeyama, M..
Differential Mechanisms for SHP2 Binding and Activation Are
Exploited by Geographically Distinct Helicobacter pylori CagA
Oncoproteins
Cell Rep. 20, 2876 (2017).
aA
Koentjoro, M.P., Adachi, N., Senda, M., Ogawa, N., Senda, T.
Crystal structure of the DNA-binding domain of the LysR-typetranscriptional regulator CbnR in complex with a DNA
fragment of the recognition-binding site in the promoter region
FEBS J. 285, 977 (2018).
aA
Shimizu, H., Toma-Fukai, S., Saijo, S., Shimizu, N.,
Kontani, K., Katada, T., Shimizu, T.
Structure-based analysis of the guanine nucleotide exchange
factor SmgGDS reveals armadillo-repeat motifs and key
regions for activity and GTPase binding
J. Biol. Chem. 292, 13441 (2017).
aA
Sato, D., Shiba, T., Karaki, T., Yamagata, W., Nozaki, T.,
Nakazawa, T., Harada, S.
X-Ray snapshots of a pyridoxal enzyme: a catalytic mechanism
involving concerted [1,5]-hydrogen sigmatropy in methionine
-lyaseSci. Rep. 7, 4874 (2017).
aA
Jang, J.Y., Bae, H., Lee, Y.J., Choi, Y.I., Kim, H.-J., Park, S.B.,
Suh, S.W., Kim, S.W., Han, B.W.
Structural Basis for the Enhanced Anti-Diabetic Efficacy ofLobeglitazone on PPAR 
Sci. Rep. 8, 31 (2018).
aA
Arai, K., Takei, T., Okumura, M., Watanabe, S., Amagai, Y.,
Asahina, Y., Moroder, L., Hojo, H., Inaba, K., Iwaoka, M.
Preparation of Selenoinsulin as a Long-Lasting Insulin
Analogue
Angew. Chem. Int. Ed. 56, 5522 (2017).
Aa
Ohki, M., Sato-Tomita, A., Matsunaga, S., Iseki, M.,
Tame, J.R.H., Shibayama, N., Park, S.-Y.
Molecular mechanism of photoactivation of a light-regulated
adenylate cyclase
Proc. Natl. Acad. Sci. U.S.A. 114, 8562 (2017).
aA
Chen, M., Asai, S.-I., Narai, S., Nambu, S., Omura, N.,
Sakaguchi, Y., Suzuki, T., Ikeda-Saito, M., Watanabe, K.,
Yao, M., Shigi, N., Tanaka, Y.
Biochemical and structural characterization of oxygen-sensitive
2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA
Proc. Natl. Acad. Sci. U.S.A. 114, 4954 (2017).
Former 17A
Matsuyama, H., Suzuki, T., Nakamura, T., Shiozu, M.,
Ehara, H., Oshima, M., Soeda, T., Hosoi, H., Yamabe, K.
Voiding generation in copper interconnect under room
temperature storage in 12 years
Jpn. J. Appl. Phys. 56, 07KG01 (2017).
aA

Former 17C
Matsuyama, H., Suzuki, T., Nakamura, T., Shiozu, M.,
Ehara, H., Oshima, M., Soeda, T., Hosoi, H., Yamabe, K.
Voiding generation in copper interconnect under room
temperature storage in 12 years
Jpn. J. Appl. Phys. 56, 07KG01 (2017).
18B
Takahashi, T., Yamaguchi, Y., Shirasawa, T., Voegeli, W.,
Tajiri, H.
Evidence for a gold trimer on theSi(111)- 21 x  21-(Ag + Au) surface
Appl. Surf. Sci. 432, 147 (2018).
aA
Bhobe, P.A.
Peek into the world of materials using thermopower and XAFS
as investigative probes
Current Science 112, 1402 (2017).
aA
Behera, P.S., Kumar, D., Sathe, V.G., Bhobe, P.A.
Influence of local structural distortions on magnetism andspin-phonon coupling of multiferroic spinel chalcogenide
J. Appl. Phys. 121, 243905 (2017).
aA
Datta, S., Kaushik, S.D., Siruguri, V., Kumar, A., Yusuf, S.M.,
Ghosh, B.
Size induced magnetic phases in half doped manganite
nanowires of La0.5Sr0.5MnO3: A neutron diffraction study
J. Phys. D: Appl. Phys. 50, 425003 (2017).
aA
Saha, R., Dhanya, R., Bellin, C., B´eneut, K.,
Bhattacharyya, A., Shukla, A., Narayana, C., Suard, E.,
Rodr´iguez-Carvajal, J., Sundaresan, A.
Magnetostructural coupling and magnetodielectric effects in the
A -site cation-ordered spinel LiFeCr4O8
Phys. Rev. B 96, 214439 (2017).
aA
Guha, P., Juluri, R.R., Bhukta, A., Ghosh, A., Maiti, S.,
Bhattacharyya, A., Srihari, V., Satyam, P.V.
In situ synchrotron X-ray diffraction study of coherently
embedded silver nanostructure growth in silicon
CrystEngComm 19, 6811 (2017).
aA
Das, D., Das, S., Singha, P., Malik, K., Deb, A.K.,
Bhattacharyya, A., Kulbachinskii, V.A., Basu, R., Dhara, S.,
Bandyopadhyay, S., Banerjee, A.
Evolution of phonon anharmonicity in Se-doped Sb2Te3
thermoelectrics
Phys. Rev. B 96, 064116 (2017).
Aa
Sethi, V., Mishra, J., Bhattacharyya, A., Sen, D., Ganguli, A.K.
Hydrotrope induced structural modifications in
CTAB/butanol/water/isooctane reverse micellar systems
Phys. Chem. Chem. Phys. 19, 22033 (2017).
aA
Tarachand, Hussain, S., Lalla, N.P., Kuo, Y.-K., Lakhani, A.,
Sathe, V.G., Deshpande, U., Okram, G.S.
Thermoelectric properties of Ag-doped CuS nanocomposites
synthesized by a facile polyol method
Phys. Chem. Chem. Phys. 20, 5926 (2018).
aA
Guin, S.N., Banerjee, S., Sanyal, D., Pati, S.K., Biswas, K.
Nanoscale Stabilization of Nonequilibrium Rock Salt BiAgSeS:
Colloidal Synthesis and Temperature Driven Unusual Phase
Transition
Chem. Mater. 29, 3769 (2017).
aA
Sharma, L., Nayak, P.K., De La Llave, E., Chen, H., Adams, S.,
Aurbach, D., Barpanda, P.
Electrochemical and Diffusional Investigation of Na 2FeIIPO4F
Fluorophosphate Sodium Insertion Material Obtained from Fe III
Precursor
ACS Appl. Mater. Interfaces 9, 34961 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
Gond, R., Meena, S.S., Yusuf, S.M., Shukla, V., Jena, N.K.,
Ahuja, R., Okada, S., Barpanda, P.
Enabling the Electrochemical Activity in Sodium Iron
Metaphosphate [NaFe(PO3)3] Sodium Battery Insertion
Material: Structural and Electrochemical Insights
Inorg. Chem. 56, 5918 (2017).
aA
Ghosh, S., Mani, A.D., Kishore, B., Munichandraiah, N.,
Rao, R.P., Wong, L.L., Adams, S., Barpanda, P.
Autocombustion Synthesis of Nanostructured Na 2Ti6O13
Negative Insertion Material for Na-Ion Batteries:
Electrochemical and Diffusion Mechanism
J. Electrochem. Soc. 164, A1881 (2017).
aA
Barman, A., Saini, C.P., Sarkar, P.K., Bhattacharjee, G.,
Bhattacharya, G., Srivastava, S., Satpati, B., Kanjilal, D.,
Ghosh, S.K., Dhar, S., Kanjilal, A.
Resistive switching behavior in oxygen ion irradiated TiO2-x
films
J. Phys. D: Appl. Phys 51, 065306 (2018).
aA
Pattanayak, N., Bhattacharyya, A., Nigam, A.K.,
Cheong, S.-W., Bajpai, A.
Quasistatic remanence in Dzyaloshinskii-Moriya interaction
driven weak ferromagnets and piezomagnets
Phys. Rev. B 96, 104422 (2017).
aA
Kumar, J., Panja, S.N., John, D., Bhattacharyya, A.,
Nigam, A.K., Nair, S.
Reentrant superspin glass state and magnetization steps in the
oxyborate Co2AlBO5
Phys. Rev. B 95, 144409 (2017).
Aa
Chelladurai, R., Debnath, K., Jana, N.R., Basu, J.K.
Nanoscale Heterogeneities Drive Enhanced Binding andAnomalous Diffusion of Nanoparticles in Model
Biomembranes
Langmuir 34, 1691 (2018).
Hayashi, S., Visikovskiy, A., Kajiwara, T., Iimori, T.,
Shirasawa, T., Nakastuji, K., Miyamachi, T., Nakashima, S.,
Yaji, K., Mase, K., Komori, F., Tanaka, S.
Triangular lattice atomic layer of Sn(1 × 1) atgraphene/SiC(0001) interface
Appl. Phys. Express 11, 015202 (2018).
aA
Pradhan, A., Maitra, T., Mukherjee, S., Mukherjee, S.,
Nayak, A., Satpati, B., Bhunia, S.
Spontaneous superlattice structures in Al xGa1−xAs/GaAs (1 0 0)
grown by metalorganic vapor phase epitaxy
Materials Letters 210, 77 (2018).
aA
Sharma, G., Gupta, A., Gupta, R., Gupta, M., Gupta, P.,
Sinha, A.K.
Depth selective crystallization study of CoFeB film on
MgO;Materials Research Express
Mater. Res. Express 4, 106404 (2017).
aA
Nag, A., Bhowal, S., Bert, F., Hillier, A.D., Itoh, M.,
Carlomagno, I., Meneghini, C., Sarkar, T., Mathieu, R.,
Dasgupta, I., Ray, S.
Ba3M Ir2O9 hexagonal perovskites in the light of spin-orbit
coupling and local structural distortions
Phys. Rev. B 97, 064408 (2018).
aA
Goswami, S., Bhattacharya, D., Ghosh, C.K., Ghosh, B.,
Kaushik, S.D., Siruguri, V., Krishna, P.S.R.
Nonmonotonic particle-size-dependence of magnetoelectric
coupling in strained nanosized particles of BiFeO3
Sci. Rep. 8, 3728 (2018).

Former 18B
Shinohara, F., Kurisu, G., Hanke, G., Bowsher, C., Hase, T.,
Kimata-Ariga, Y.
Structural basis for the isotype-specific interactions offerredoxin and ferredoxin: NADP+ oxidoreductase: an
evolutionary switch between photosynthetic and heterotrophic
assimilation
Photosynth. Res. 134, 281 (2017).
18C
Yoshimura, Y., Takekiyo, T., Koyama, Y., Takaku, M.,
Yamamura, M., Kikuchi, N., Wakabayashi, D., Funamori, N.,
Matsuishi, K., Abe, H., Hamaya, N.
High-pressure glass formation of a series of 1-alkyl-3methylimidazolium bis(trifluoromethanesulfonyl)imide
homologues
Phys. Chem. Chem. Phys. 20, 199 (2018).
aA
Kim, D.Y., Kume, T.
Si allotropes and group IV clathrates investigated under highpressures
Jpn. J. Appl. Phys. 56, 05FA07 (2017).
aA
Maruyama, K., Kagi, H., Komatsu, K., Yoshino, T., Nakano, S.
Pressure-induced phase transition of vaterite, a metastablephase of CaCO3.
J. Raman Spectrosc. 48, 1449 (2017).
aA
Sekine, C., Sai, U., Hayashi, J., Kawamura, Y., Bauer, E.
High-pressure Synthesis and Bulk Modulus of
Non-centrosymmetric Superconductor Mo3Al2C
J. Phys.: Conf. Ser. 950, 042028 (2017).
aA
Kawamura, Y., Hayashi, J., Takeda, K., Sekine, C., Tanida, H.,
Sera, M., Nakano, S., Tomita, T., Takahashi, H., Nishioka, T.
X-Ray Diffraction Study of CeT2Al10 (T = Ru, Os) at Low
Temperatures and under Pressures
Acta Physica Polonica A 131, 988 (2017).
aA
Kadobayashi, H., Hirai, H., Ohfuji, H., Kojima, Y., Ohishi, Y.,
Hirao, N., Ohtake, M., Yamamoto, Y.
Transition mechanism of sH to filled-ice Ih structure ofmethane hydrate under fixed pressure condition
J. Phys.: Conf. Ser. 950, 042044 (2017).
aA
Watanabe, M., Komatsu, K., Noritake, F., Kagi, H.
Structural incorporation of MgCl2 into ice VII at room
temperature
Jpn. J. Appl. Phys. 56, 05FB03 (2017).
aA
Shinozaki, A., Komatsu, K., Kagi, H., Fujimoto, C.,
Machida, S., Sano-Furukawa, A., Hattori, T.
Behavior of intermolecular interactions in α-glycine under highpressure
J. Chem. Phys. 148, 044507 (2018).
aA
Li, C., Ishii, Y., Inayama, S., Kawasaki, S.
Quinone molecules encapsulated in SWCNTs for
low-temperature Na ion batteries
Nanotechnology 28, 355401 (2017).
aA
Abe H., Kishimura H., Takaku M., Watanabe M., Hamaya N.
Low-temperature and high-pressure phases of aroom-temperature ionic liquid and polyiodides:
1-methyl-3- propylimidazolium iodide
Faraday Discuss. 206, 49 (2018).

Photon Factory Activity Report 2017 #35 (2018) B
19B
Yamamoto, K., Hirata, Y., Horio, M., Yokoyama, Y.,
Takubo, K., Minohara, M., Kumigashira, H., Yamasaki, Y.,
Nakao, H., Murakami, Y., Fujimori, A., Wadati, H.
Thickness dependence and dimensionality effects on charge
and magnetic orderings in La1/3Sr2/3FeO3 thin films
Phys. Rev. B 97, 075134 (2018).
20A
Kitajima, M., Kishino, T., Okumura, T., Kobayashi, N.,
Sayama, A., Mori, Y., Hosaka, K., Odagiri, T., Hoshino, M.,
Tanaka, H.
Low-energy and very-low energy total cross sections forelectron collisions with N2
Eur. Phys. J. D 71, 139 (2017).
aA
Hosaka, K., Torizuka, Y., Schmidt, P., Odagiri, T., Knie, A.,
Jänkälä, K., Ehresmann, A., Kitajima, M., Kouchi, N.
The observation of the pair of Lyman-α and Lyman-β photons
produced in the photodissociation of H2
J. Phys.: Conf. Ser. 875, 032002 (2017).
aA
Abe, Y., Odagiri, T., Ohrui, S., Taniguchi, T., Shiratori, T.,
Kaida, M., Yachi, K., Kumagai, Y., Hosaka, K., Kitajima, M.,
Kouchi, N.
Cross sections for the formation of H(2p) atom via doubly
excited states in photoexcitation of rotationally cold H 2
J. Phys.: Conf. Ser. 875, 032037 (2017).
20B
Suzuki, R., Koizumi, H., Kojima, K., Fukuyama, S., Arai, Y.,
Tsukamoto, K., Suzuki, Y., Tachibana, M.
Characterization of grown-in dislocations in high-quality
glucose isomerase crystals by synchrotron
monochromatic-beam X-ray topography
J. Cryst. Growth 468, 299 (2017).
aA
Mizuno, K., Ikeya, H., Inoue, K., Fujimori, A., Okamoto, H.
Determination of minimum detectable refraction angle in X-ray
diffraction-enhanced imaging via standard test piece
Jpn. J. Appl. Phys. 56, 066601 (2017).
Aa
Koizumi, H., Uda, S., Tsukamoto, K., Tachibana, M.,
Kojima, K., Okada, J., Nozawa, J.
Crystallization Technique of High-Quality Protein Crystals
Controlling Surface Free Energy
Cryst. Growth Des. 17, 6712 (2017).
Former 20B
Veliscek-Carolan, J., Rawal, A., Luca, V., Hanley, T.L.
Zirconium phosphonate sorbents with tunable structure andfunction
Micropor. Mesopor. Mater. 252, 90 (2017).
aA
Marshall, C.P., Marshall, A.O., Aitken, J.B., Lai, B., Vogt, S.,
Breuer, P., Steemans, P., Lay, P.A.
Imaging of Vanadium in Microfossils: A New Potential
Biosignature
Astrobiology 17, 1069 (2017).
aA
Vaughan, J., Riggio, J., Chen, J., Peng, H., Harris, H.H.,van der Ent, A.
Characterisation and hydrometallurgical processing of nickelfrom tropical agromined bio-ore
Hydrometallurg 169, 346 (2017).
27A
Shimoyama, I., Baba, Y., Hirao, N.
Micro-orientation control of silicon polymer thin films ongraphite surfaces modified by heteroatom doping
Appl. Surf. Sci. 405, 255 (2017).
aA

Ikeura-Sekiguchi, H., Sekiguchi, T.
Photo-oxidative doping in π-conjugated zig-zag chain of carbon
atoms with sulfur-functional groupAppl. Phys. Lett. 111, 231605 (2017).
aA
Baba, Y., Shimoyama, I.
Ion desorption from bulk cesium chloride at moderatetemperature (< 500℃) under electric field
e-J. Surf. Sci. Nanotech. 16, 53 (2018).
27B
Murayama, M., Yanagida, Y., Komuro, S., Zhao, X.
Effect of doping concentration on Nd-related
photoluminescence in TiO2 with Al co-doping
J. Phys.: Conf. Ser. 864, 012068 (2017).
aA
Sano, Y., Watanabe, S., Matsuura, H., Nagoshi, K., Arai, T.
Microanalysis of silica-based adsorbent for effective recoveryof radioactive elements
J. Nucl. Sci. Technol. 54, 1058 (2017).
aA
Takeuchi M., Sano Y., Watanabe S., Nakahara M., Aihara H.,
Kofuji H., Koizumi T., Mizuno T.
Minor Actinides Recovery from Irradiated Fuel for SmART
Cycle Test
Proceedings of ICAPP2017, 17392 (2017).
aA
Abe, R., Nagoshi, K., Arai, T., Watanabe, S., Sano, Y.,
Matsuura, H., Takagi, H., Shimizu, N., Koka, M., Sato, T.
Microscopic analyses of complexes formed in adsorbent for Mo
and Zr separation chromatography
Nucl. Instrum. Methods Phys. Res. B 404, 173 (2017).
aA
Booth, S.G., Uehara, A., Chang, S.-Y., La Fontaine, C.,Fujii, T., Okamoto, Y., Imai, T., Schroeder, S.L.M.,
Dryfe, R.A.W.
The significance of bromide in the Brust-Schiffrin synthesis ofthiol protected gold nanoparticles
Chem. Sci. 8, 7954 (2017).
aA
Yokoya, A., Ito, T.
Photon-induced Auger Effect in Biological Systems: A Review
Int. J. Radiat. Biol. 93, 743 (2017).
aA
Okamoto, Y., Nagai, T., Shiwaku, H., Inose, T., Sato, S.
Chemical state analysis of rhodium in the simulated waste glassby synchrotron radiation based XAFS and imaging XAFS
techniques
Trans. Atomic Energy Soc. Jpn 16, 180 (2017).
aA
Fukunaga, H., Kaminaga, K., Sato, T., Usami, N.,
Watanabe, R., Butterworth, K.T., Ogawa, T., Yokoya, A.,
Prise, K.M.
Application of an Ex Vivo Tissue Model to Investigate
Radiobiological Effects on Spermatogenesis
Radiat. Res. 189, 661 (2018).
28A
Noda, T., Kudo, K., Takasuga, M., Nohara, M., Sugimoto, T.,
Ootsuki, D., Kobayashi, M., Horiba, K., Ono, K.,
Kumigashira, H., Fujimori, A., Saini, N.L., Mizokawa, T.
Orbital-dependent band renormalization in
BaNi2(As1-xPx)2 (x = 0.00 and 0.092)
J. Phys. Soc. Jpn. 86, 064708 (2017).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Yamamoto, S., Ootsuki, D., Shimonaka, D., Shibata, D.,
Kodera, K., Okawa, M., Saitoh, T., Horio, M., Fujimori, A.,
Kumigashira, H., Ono, K., Ikenaga, E., Miyasaka, S.,
Tajima, S., Yoshida, T.
Observation of a Pseudogap in the Vicinity of theMetal-Insulator Transition in the Perovskite-type Vanadium
Oxides Nd1-xSrxVO3
J. Phys. Soc. Jpn. 87, 024708 (2018).
aA
Suzuki, H., Okazaki, K., Yamamoto, T., Someya, T.,
Okada, M., Koshiishi, K., Fujisawa, M., Kanai, T., Ishii, N.,
Nakajima, M., Eisaki, H., Ono, K., Kumigashira, H., Itatani, J.,
Fujimori, A., Shin, S.
Ultrafast melting of spin density wave order in BaFe 2As2
observed by time- and angle-resolved photoemission
spectroscopy with extreme-ultraviolet higher harmonic
generation
Phys. Rev. B 95, 165112 (2017).
aA
Okamoto, Y., Matsumoto, R., Yagihara, T., Iwai, C.,
Miyoshi, K., Takeuchi, J., Horiba, K., Kobayashi, M., Ono, K.,
Kumigashira, H., Saini, N.L., Mizokawa, T.
Electronic structure and polar catastrophe at the surface of
Lix CoO2 studied by angle-resolved photoemission
spectroscopy
Phys. Rev. B 96, 125147 (2017).
Aa
Phan, G.N., Nakayama, K., Sugawara, K., Sato, T., Urata, T.,
Tanabe, Y., Tanigaki, K., Nabeshima, F., Imai, Y., Maeda, A.,
Takahashi, T.
Effects of strain on the electronic structure, superconductivity,and nematicity in FeSe studied by angle-resolved
photoemission spectroscopy
Phys. Rev. B 95, 224507 (2017).
aA
Kanayama, S., Nakayama, K., Phan, G.N., Kuno, M.,
Sugawara, K., Takahashi, T., Sato, T.
Two-dimensional Dirac semimetal phase in undoped
one-monolayer FeSe film
Phys. Rev. B 96, 220509(R) (2017).
aA
Shimojima, T., Malaeb, W., Nakamura, A., Kondo, T.,
Kihou, K., Lee, C.-H., Iyo, A., Eisaki, H., Ishida, S.,
Nakajima, M., Uchida, S.-I., Ohgushi, K., Ishizaka, K., Shin, S.
Antiferroic electronic structure in the nonmagnetic
superconducting state of the iron-based superconductors
Sci. Adv. 3, e1700466 (2017).
aA
Oinuma, H., Souma, S., Takane, D., Nakamura, T.,
Nakayama, K., Mitsuhashi, T., Horiba, K., Kumigashira, H.,
Yoshida, M., Ochiai, A., Takahashi, T., Sato, T.
Three-dimensional band structure of LaSb and CeSb: Absenceof band inversion
Phys. Rev. B 96, 041120(R) (2017).
aA
Kuroda, K., Tomita, T., Suzuki, M.-T., Bareille, C.,
Nugroho, A.A., Goswami, P., Ochi, M., Ikhlas, M.,
Nakayama, M., Akebi, S., Noguchi, R., Ishii, R., Inami, N.,
Ono, K., Kumigashira, H., Varykhalov, A., Muro, T.,
Koretsune, T., Arita, R., Shin, S., Kondo, T., Nakatsuji, S.
Evidence for magnetic Weyl fermions in a correlated metal
Nat. Mater. 16, 1090 (2017).
aA
Nagayama, T., Terashima, K., Wakita, T., Fujiwara, H.,
Fukura, T., Yano, Y., Ono, K., Kumigashira, H., Ogiso, O.,
Yamashita, A., Takano, Y., Mori, H., Usui, H., Ochi, M.,
Kuroki, K., Muraoka, Y., Yokoya, T.
Direct observation of double valence-band extrema andanisotropic effective masses of the thermoelectric material
SnSe
Jpn. J. Appl. Phys. 57, 010301 (2018).
aA

Takane, D., Nakayama, K., Souma, S., Wada, T., Okamoto, Y.,
Takenaka, K., Yamakawa, Y., Yamakage, A., Mitsuhashi, T.,
Horiba, K., Kumigashira, H., Takahashi, T., Sato, T.
Observation of Dirac-like energy band and ring-torus Fermi
surface associated with the nodal line in topological insulator
CaAgAsnpj Quantum Mater. 3, 1 (2018).
NE1A
Ohmura, A., Matsuzawa, M., Ishikawa, F., Suzuki, Y.,
Komatsu, M., Osuga, S., Nakano, S., Nakayama, A.,
Yamada, Y., Kashiwagi, T., Kadowaki, K.
Transport and structural properties of
Cu0.25Bi2(TexSe1-x)3(x= 0.01) under high pressure
Jpn. J. Appl. Phys. 56, 05FB04 (2017).
aA
Ohmura, A., Higuchi, Y., Ochiai, T., Kanou, M., Nakano, S.,
Ishikawa, F., Nakayama, A., Yamada, Y., Sasagawa, T.
Investigation of topological phase transition in BiTeBr underhigh pressure
J. Phys.: Conf. Ser. 950, 042036 (2017).
aA
Niwa, K., Ogasawara, H., Hasegawa, M.
Pyrite Form of Group-14 Element Pernitrides Synthesized at
High Pressure and High Temperature
Dalton Trans. 46, 9750 (2017).
aA
Ono, S., Kikegawa, T.
Phase transition of ZnS at high pressures and temperatures
Phase Transit. 91, 9 (2017).
aA
Kawamura, F., Yusa, H., Taniguchi, T.
Synthesis of hexagonal phases of WN and W2.25N3 byhigh-pressure metathesis reaction
J. Am. Ceram. Soc. 101, 949 (2018).
aA
Kobayashi, K., Nakao, A., Maki, S., Yamaura, J., Katase, T.,
Sato, H., Sagayama, H., Kumai, R., Kuramoto, Y.,
Murakami, Y., Hiramatsu, H., Hosono, H.
Structure determination in thin film Ba1-xLaxFe2As2: Relation
between the FeAs4 geometry and superconductivity
Phys. Rev. B 96, 125116 (2017).
aA
Niwa, K., Terabe, T., Kato, D., Takayama, S., Kato, M.,
Soda, K., Hasegawa, M.
Highly Coordinated Iron and Cobalt Nitrides Synthesized at
High Pressures and High Temperatures
Inorg. Chem. 56, 6410 (2017).
aA
Takai, A., Freas, D.J., Suzuki, T., Sugimoto, M., Labuta, J.,
Haruki, R., Kumai, R., Adachi, S., Sakai, H., Hasobe, T.,
Matsushita, Y., Takeuchi, M.
The effect of a highly twisted C=C double bond on theelectronic structures of 9,9'-bifluorenylidene derivatives in the
ground and excited states
Organic Chemistry Frontiers 4, 650 (2017).
aA
Ono, S., Kikegawa, T.
Phase transformation of GaAs at high pressures andtemperatures
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aA
Nakano, A., Sugawara, K., Tamura, S., Katayama, N.,
Matsubayashi, K., Okada, T., Uwatoko, Y., Munakata, K.,
Nakao, A., Sagayama, H., Kumai, R., Sugimoto, K.,
Maejima, N., Machida, A., Watanuki, T., Sawa, H.
Pressure-induced coherent sliding-layer transition in the
excitonic insulator Ta2NiSe5
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aAPhoton Factory Activity Report 2017 #35 (2018) B
Yamamoto, T., Zeng, D., Kawakami, T., Arcisauskaite, V.,
Yata, K., Patino, M.A., Izumo, N., McGrady, J.E.,
Kageyama, H., Hayward, M.A.
The role of π-blocking hydride ligands in a pressure-induced
insulator-to-metal phase transition in SrVO2H
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NE3A
Fujimoto, Z., Suzuki, N., Kishine, N., Ichinose, H.,
Momma, M., Kimura, A., Funane, K.
Carbohydrate-binding architecture of the multi-modular
α-1,6-glucosyltransferase from Paenibacillus sp. 598K, which
produces α-1,6-glucosyl-α-glucosaccharides from starch
Biochem. J. 474, 2763 (2017).
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Fushinobu, S.
Crystal structures of carbohydrate-active enzymes withpotential for practical oligosaccharide synthesis
Int. J. Microgravity Sci. Appl. 34, 340109 (2017).
aA
Komiya, D., Hori, A., Ishida, T., Igarashi, K., Samejima, M.,
Koseki, T., Fushinobu, S.
Crystal Structure and Substrate Specificity Modification ofAcetyl Xylan Esterase from Aspergillus luchuensis
Appl. Environ. Microbiol. 83, e01251 (2017).
aA
Xu, Y., Liu, L., Nakamura, A., Someya, S., Miyakawa, T.,
Tanokura, M.
Studies on the regulatory mechanism of isocitrate
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aA
Kezuka, Y., Ishida, T., Yoshida, Y., Nonaka, T.
Structural insights into the catalytic mechanism of cysteine(hydroxyl) lyase from the hydrogen sulfide-producing oral
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Roppongi, S., Suzuki, Y., Tateoka, C., Fujimoto, M.,
Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y.,
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Crystal structures of a bacterial dipeptidyl peptidase IV reveal anovel substrate recognition mechanism distinct from that of
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Sci. Rep. 8, 2714 (2018).
aA
Sato, M., Liebschner, D., Yamada, Y., Matsugaki, N.,
Arakawa, T., Wills, S.S., Hattie, M., Stubbs, K.A., Ito, T.,
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The first crystal structure of a family 129 glycoside hydrolasefrom a probiotic bacterium reveals critical residues and metal
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aA
Tomita, T., Kim, S.-Y., Teramoto, K., Meguro, A., Ozaki, T.,
Yoshida, A., Motoyoshi, Y., Mori, N., Ishigami, K.,
Watanabe, H., Nishiyama, M., Kuzuyama, T.
Structural insight into the CotB2-catalyzed cyclization ofGeranylgeranyl Diphosphate to the Diterpene
Cyclooctat-9-en-7-ol
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aA
Roppongi, S., Tateoka, C., Fujimoto, M., Iizuka, I.,
Morisawa, S., Nakamura, A., Honma, N., Suzuki, Y., Shida, Y.,
Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Periplasmic form of dipeptidyl aminopeptidase IV from
Pseudoxanthomonas mexicana WO24: purification, kinetic
characterization, crystallization and X-ray crystallographic
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aA

Fujita, S., Cho, S.-H., Yoshida, A., Hasebe, F., Tomita, T.,
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Crystal structure of LysK, an enzyme catalyzing the last step oflysine biosynthesis in Thermus thermophilus, in complex withlysine: Insight into the mechanism for recognition of theamino-group carrier protein, LysW
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Yamada, C., Gotoh, A., Sakanaka, M., Hattie, M.,
Stubbs, K.A., Katayama-Ikegami, A., Hirose, J., Kurihara, S.,
Arakawa, T., Kitaoka, M., Okuda, S., Katayama, T.,
Fushinobu, S.
Molecular insight into evolution of symbiosis between
breast-fed infants and a member of the human gut microbiome
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aA
Miyanaga, A.
Structure and function of polyketide biosynthetic enzymes:
various strategies for production of structurally diverse
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aA
Yasutake, Y., Kusada, H., Ebuchi, T., Hanada, S.,
Kamagata, Y., Tamura, T., Kimura, N.
Bifunctional quorum-quenching and antibiotic-acylase MacQ
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Mizobuchi, T., Nonaka, R., Yoshimura, M., Abe, K.,
Takahashi, S., Kera, Y., Goto, M.
Crystal structure of a pyridoxal 5'-phosphate-dependent
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Im, D., Matsui, D., Arakawa, T., Isobe, K., Asano, Y.
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Tachioka, M., Nakamura, A., Ishida, T., Igarashi, K.,
Samejima, M.
Crystal structure of a family 6 cellobiohydrolase from thebasidiomycete Phanerochaete chrysosporium
Acta Crystallogr. F-Struct. Biol. Commun. 73, 398 (2017).
aA
Matsuda, T., Ito, T., Takemoto, C., Katsura, K., Ikeda, M.,
Wakiyama, M., Kukimoto-Niino, M., Yokoyama, S.,
Kurosawa, Y., Shirouzu, M.
Cell-free synthesis of functional antibody fragments to provide
a structural basis for antibody-antigen interaction
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aA
Yuki, H., Kikuzato, K., Koda, Y., Mikuni, J., Tomabechi, Y.,
Kukimoto-Niino, M., Tanaka, A., Shirai, F., Shirouzu, M.,
Koyama, H., Honma, T.
Activity cliff for 7-substituted pyrrolo-pyrimidine inhibitors of
HCK explained in terms of predicted basicity of the amine
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Tanaka, K., Caaveiro, J.M.M., Morante, K., Tsumoto, K.
Haemolytic actinoporins interact with carbohydrates using theirlipid-binding module
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aAPhoton Factory Activity Report 2017 #35 (2018) B
Ou, X., Guo, J., Wang, L., Yang, H., Liu, X., Sun, J., Liu, Z.
Ion- and water-binding sites inside an occluded hourglass poreof a trimeric intracellular cation (TRIC) channel
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Matsui, T., Kodama, T., Mori, T., Tadakoshi, T., Noguchi, H.,
Abe, I., Morita, H.
2-Alkylquinolone alkaloid biosynthesis in the medicinal plant
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polyketide synthases
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Jang, J.Y., Koh, M., Bae, H., An, D.R., Im, H.N., Kim, H.S.,
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Structural basis for differential activities of enantiomeric
PPARγ agonists: Binding of S35 to the alternate site
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aA
Yasutake, Y., Kameda, T., Tamura, T.
Structural insights into the mechanism of the drastic changes inenzymatic activity of the cytochrome P450 vitamin D3hydroxylase (CYP107BR1) caused by a mutation distant fromthe active site
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aA
Cho, S.-H., Kim, S.-Y., Tomita, T., Shiraishi, T., Park, J.-S.,
Sato, S., Kudo, F., Eguchi, T., Funa, N., Nishiyama, M.,
Kuzuyama, T.
Fosfomycin Biosynthesis via Transient Cytidylylation of
2-Hydroxyethylphosphonate by the Bifunctional Fom1 Enzyme
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aA
Sakuraba, H.
Crystal structures of hyperthermophilic archaeal
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Miyazono, K.-I., Moriwaki, S., Ito, T., Kurisaki, A.,
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Hydrophobic patches on SMAD2 and SMAD3 determine
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aA
Ooi, W.-Y., Murayama, Y., Mekler, V., Minakhin, L.,
Severinov, K., Yokoyama, S., Sekine, S.-I.
A Thermus phage protein inhibits host RNA polymerase by
preventing template DNA strand loading during open promoter
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aA
Ehara, H., Yokoyama, T., Shigematsu, H., Yokoyama, S.,
Shirouzu, M., Sekine, S.-I.
Structure of the complete elongation complex of RNApolymerase II with basal factors
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Mori, T., Iwabuchi, T., Hoshino, S., Wang, H., Matsuda, Y.,
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Molecular basis for the unusual ring reconstruction in fungal
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Shimasaki, T., Yoshida, H., Kamitori, S., Sode, K.
X-ray structures of fructosyl peptide oxidases revealing
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aA

Amano, Y., Kikuchi, M., Sato, S., Yokoyama, S., Umehara, T.,
Umezawa, N., Higuchi, T.
Development and crystallographic evaluation of histone H3
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aA
Motoyama, T., Nakano, S., Yamamoto, Y., Tokiwa, H.,
Asano, Y., Ito, S.
Product release mechanism associated with structural changes
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aA
Fujishiro, T., Terahata, T., Kunichika, K., Yokoyama, N.,
Maruyama, C., Asai, K., Takahashi, Y.
Zinc-Ligand Swapping Mediated Complex Formation and
Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster
Biogenesis in Bacillus subtitles
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aA
Yoon, J., Kim, S.J., An, S., Cho, S., Leitner, A., Jung, T.,
Aebersold, R., Hebert, H., Cho, U.-S., Song, J.-J.
Integrative Structural Investigation on the Architecture of
Human Importin4_Histone H3/H4_Asf1a Complex and Its
Histone H3 Tail Binding
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aA
Hayashi, J., Mutaguchi, Y., Minemura, Y., Nakagawa, N.,
Yoneda, K., Ohmori, T., Ohshima, T., Sakuraba, H.
Crystal structure of the novel amino-acid racemase isoleucine
2-epimerase from Lactobacillus buchneri
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aA
Harada, A., Kamimura, N., Takeuchi, K., Yu, H.Y., Masai, E.,
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The crystal structure of a new O-demethylase from
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Hirabayashi, J., Hu, D., Tateno, H., Kuwabara, N., Kato, R.,
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Carbohydrate recognition mechanism of the mushroom galectin
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Yoshino, R., Yasuo, N., Hagiwara, Y., Ishida, T., Inaoka, D.K.,
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In silico, in vitro, X-ray crystallography, and integrated
strategies for discovering spermidine synthase inhibitors for
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Jang, J.Y., Bae, H., Lee, Y.J., Choi, Y.I., Kim, H.-J., Park, S.B.,
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Structural Basis for the Enhanced Anti-Diabetic Efficacy ofLobeglitazone on PPAR 
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aA
Murakami, K., Nakano, K., Shimizu, T., Ohto, U.
The crystal structure of human DEAH-box RNA helicase 15
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aA
Sakurai, S., Shimizu, T., Ohto, U.
The crystal structure of the AhRR-ARNT heterodimer reveals
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aAPhoton Factory Activity Report 2017 #35 (2018) B
Kato, A., Yamao, M., Hashihara, Y., Ishida, H., Itoh, T.,
Yamamoto, K.
Vitamin D Analogues with a p-Hydroxyphenyl Group at the
C25 Position: Crystal Structure of Vitamin D Receptor LigandBinding Domain Complexed with the Ligand Explains the
Mechanism Underlying Full Antagonistic Action
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Deminami, S., Kawamura, Y., Chen, Y.Q., Kanazawa, M.,
Hayashi, J., Kuzuya, T., Takeda, K., Matsuda, M., Sekine, C.
High-pressure Synthesis and Physical Properties of New Filled
Skutterudite Compound BaOs4P12
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aA
Kanazawa, M., Li, L., Kuzuya, T., Takeda, K., Hirai, S.,
Higo, Y., Shinmei, T., Irifune, T., Sekine, C.
High-pressure and high-temperature synthesis of heavy
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Sekine, C., Mori, Y.
Development of thermoelectric materials using high-pressure
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Wakabayashi, D., Funamori, N., Kikegawa, T., Watanabe, K.,
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Nature of the transformation in liquid iodine at 4 GPa
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Fuchizaki, K., Nishimura, H., Hase, T., Saitoh, H.
Pressure-induced structural change in liquid GeI4
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Suzuki, A.
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Miya, K., Matsushita, S., Hyodo, K., Tokunaga, C.,
Sakamoto, H., Mizutani, T., Hiramatsu, Y.
Renal contrast microangiography with synchrotron radiation: A
novel method for visualizing structures within nephrons in vivo
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Suzuki, A..
P-V-T equation of state of rhodium oxyhydroxide
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Suzuki, A.
Effect of carbon dioxide on the viscosity of a melt of jadeite
composition at high pressure
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Ohuchi, T., Kawazoe, T., Higo, Y., Suzuki, A.
Flow behavior and microstructures of hydrous olivine
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Ono, S., Kikegawa, T., Higo, Y.
Reaction boundary between akimotoite andringwoodite + stishovite in MgSiO3
Phys. Chem. Minerals 44, 425 (2017).
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Sasaya, T., Sunaguchi, N., Hyodo, K., Zeniya, T., Yuasa, T.
Multi-pinhole fluorescent x-ray computed tomography formolecular imaging
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Kubo, T., Kono, M., Imamura, M., Kato, T., Uehara, S.,
Kondo, T., Higo, Y., Tange, Y., Kikegawa, T.
Formation of a metastable hollandite phase from amorphous
plagioclase: A possible origin of lingunite in shocked chondritic
meteorites
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aA
Wu, Y., Takano, H., Momose, A.
In-situ observation of polymer blend phase separation by x-ray
Talbot-Lau interferometer
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aA
Inoue, K., Kobayashi Y., Yoda Y., Koshimizu M., Nishikido F.,
Haruki R., Kishimoto S.
Measurement of nuclear resonant scattering on 61Ni with fast
scintillation detector using proportional-mode silicon avalanche
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Hiyama, F., Noguchi, T., Koshimizu, M., Kishimoto, S.,
Haruki, R., Nishikido, F., Yanagida, T., Fujimoto, Y., Aida, T.,
Takami, S., Adschiri, T., Asai, K.
X-ray detection capabilities of plastic scintillators incorporated
with hafnium oxide nanoparticles surface-modified with phenyl
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Nakabayashi, K., Chorazy, S., Komine, M., Miyamoto, Y.,
Takahashi, D., Sieklucka, B., Ohkoshi, S.
Magnetic Lotus Root Based on a Cyanido-Bridged Co-W Metal
Assembly
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aA
Shirasawa, T., Masuda, T., Voegeli, W., Arakawa, E.,
Kamezawa, C., Takahashi, T., Uosaki, K., Matsushita, T.
Fast Structure Determination of Electrode Surfaces for
Investigating Electrochemical Dynamics Using
Wavelength-Dispersive X-ray Crystal Truncation Rod
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Ohtsu, H., Kawano, M.
Kinetic assembly of coordination networks
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Yoshida, T., Cosquer, G., Izuogu, D.C., Ohtsu, H.,
Kawano, M., Lan, Y., Wernsdorfer, W., Nojiri, H.,
Breedlove, B.K., Yamashita, M.
Field-Induced Slow Magnetic Relaxation of GdIII Complex
with a Pt-Gd Heterometallic Bond
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Kiyota, Y., Taira, M., Otobe, S., Hanyuda, K., Naruke, H.,
Ito, T.
Compositional introduction of lithium ions into conductive
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Kimijima, K., Niwa, Y., Kimura, M.
In Situ XAFS Observation of Chemical Species Near
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Kim, J., Koo, J.Y., Lee, Y.H., Kojima, T., Yakiyama, Y.,
Ohtsu, H., Oh, J.H., Kawano, M.
Structural Investigation of Chemiresistive Sensing Mechanism
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aAPhoton Factory Activity Report 2017 #35 (2018) B
Kobayashi, A., Yamamoto, N., Shigeta, Y., Yoshida, M.,
Kato, M.
Two-way vapochromism of a luminescent platinum(II)complex with phosphonic-acidfunctionalized bipyridine ligand
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Kimura, M.
Recent Investigations of Structural Materials Using
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Masuda, T., Uosaki, K.
In situ determination of electronic structure at solid/liquidinterfaces
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Machida, M., Ueno, M., Omura, T., Kurusu, S., Hinokuma, S.,
Nanba, T., Shinozaki, O., Furutani, H.
CeO2-Grafted Mn-Fe Oxide Composites as Alternative
Oxygen-Storage Materials for Three-Way Catalysts:
Laboratory and Chassis Dynamometer Tests
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aA
Hosokawa, S., Stellhorn, J.R., Ikemoto, H., Mimura, K.,
Wakita, K., Mamedov, N.
Lattice Distortions in TlInSe2 Thermoelectric Material Studied
by X-Ray Absorption Fine Structure
Phys. Status Solidi A 215, 1700416 (2018).
aA
Ohba, T., Kubo, H., Ohshima, Y., Makita, Y., Nakamura, N.,
Uehara, H., Takakusagi, S., Asakura, K.
An Origin for Lattice Expansion in PVP-Protected Small Pd
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aA
Cong, C., Nakayama, S., Maenosono, S., Harada, M.
Microwave-Assisted Polyol Synthesis of Pt/Pd and Pt/Rh
Bimetallic Nanoparticles in Polymer Solutions Prepared by
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Er, H., Yasuda, H., Harada, M., Taguchi, E., Iida, M.
Formation of silver nanoparticles from ionic liquids comprisingN-alkylethylenediamine: Effects of dissolution modes of thesilver(I) ions in the ionic liquids
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Abe, H., Niwa, Y., Kitano, M., Inoue, Y., Sasase, M.,
Nakao, T., Tada, T., Yokoyama, T., Hara, M., Hosono, H.
Anchoring Bond between Ru and N Atoms of Ru/Ca2NH
Catalyst: Crucial for the High Ammonia Synthesis Activity
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Nishi, M., Ohkubo, T., Yamasaki, M., Takagi, H., Kuroda, Y.
Surplus adsorption of bromide ion into -conjugated carbon
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Ikemoto, H.
miXAFS: a program for X-ray absorption fine-structure data
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Yamamoto, T., Hayashi, K., Happo, N., Hosokawa, S.,
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Local atomic structure near an Nb atom in aged -Ti alloys
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aA

Zhang, H., Kawamura, S., Tamba, M., Kojima, T.,
Yoshiba, M., Izumi, Y.
Is water more reactive than H2 in photocatalytic CO2
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Hayashi, S., Yamazoe, S., Koyasu, K., Tsukuda, T.
Lewis Base Catalytic Properties of [Nb10O28]6- for CO2 Fixation
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Aiura, Y., Ozawa, K., Hase, I., Bando, K., Haga, H.,
Kawanaka, H., Samizo, A., Kikuchi, N., Mase, K.
Disappearance of Localized Valence Band Maximum of
Ternary Tin Oxide with Pyrochlore Structure, Sn2Nb2O7
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Motokura, K., Maeda, K., Chun, W.-J.
SiO2-Supported Rh Catalyst for Efficient Hydrosilylation of
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Motokura, K., Ikeda, M., Nambo, M., Chun, W.-J.,
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Concerted Catalysis in Tight Spaces: Palladium-Catalyzed
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Hinokuma, S., Shimanoe, H., Kawabata, Y., Kiritoshi, S.,
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Supported and unsupported manganese oxides for catalyticammonia combustion
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Motoyama, K., Unno, H., Hattori, A., Takaoka, T., Ishikita, H.,
Kawaide, H., Yoshimura, T., Hemmi, H.
A Single Amino Acid Mutation Converts(R)-5- Diphosphomevalonate Decarboxylase into a Kinase
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Suyama, Y., Muraki, N., Kusunoki, M., Miyake, H.
Crystal structure of the starch-binding domain of glucoamylasefrom Aspergillus Niger
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Fushinobu, S.
Crystal structures of carbohydrate-active enzymes withpotential for practical oligosaccharide synthesis
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Komiya, D., Hori, A., Ishida, T., Igarashi, K., Samejima, M.,
Koseki, T., Fushinobu, S.
Crystal Structure and Substrate Specificity Modification ofAcetyl Xylan Esterase from Aspergillus luchuensis
Appl. Environ. Microbiol. 83, e01251 (2017).
aA
Kezuka, Y., Ishida, T., Yoshida, Y., Nonaka, T.
Structural insights into the catalytic mechanism of cysteine(hydroxyl) lyase from the hydrogen sulfide-producing oral
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Biochem. J. 475, 733 (2018).
aA
Roppongi, S., Suzuki, Y., Tateoka, C., Fujimoto, M.,
Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y.,
Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Crystal structures of a bacterial dipeptidyl peptidase IV reveal anovel substrate recognition mechanism distinct from that of
mammalian orthologues
Sci. Rep. 8, 2714 (2018).

Photon Factory Activity Report 2017 #35 (2018) B
Sato, M., Liebschner, D., Yamada, Y., Matsugaki, N.,
Arakawa, T., Wills, S.S., Hattie, M., Stubbs, K.A., Ito, T.,
Senda, T., Ashida, H., Fushinobu, S.
The first crystal structure of a family 129 glycoside hydrolasefrom a probiotic bacterium reveals critical residues and metal
cofactors
J. Biol. Chem. 292, 12126 (2017).
aA
Tomita, T., Kim, S.-Y., Teramoto, K., Meguro, A., Ozaki, T.,
Yoshida, A., Motoyoshi, Y., Mori, N., Ishigami, K.,
Watanabe, H., Nishiyama, M., Kuzuyama, T.
Structural insight into the CotB2-catalyzed cyclization ofGeranylgeranyl Diphosphate to the Diterpene
Cyclooctat-9-en-7-ol
ACS Chem. Biol. 12, 1621 (2017).
aA
Shojima, T., Hou, F., Takahashi, Y., Matsumura, Y., Okai, M.,
Nakamura, A., Mizuno, K., Inaba, K., Kojima, M.,
Miyakawa, T., Tanokura, M.
Crystal structure of a Ca2+-dependent regulator of flagellar
motility reveals the open-closed structural transition
Sci. Rep. 8, 2014 (2018).
aA
Fujimoto, Z., Kishine, N., Suzuki, N., Suzuki, R.,
Mizushima, D., Momma, M., Kimura, K., Funane, K.
Isomaltooligosaccharide-binding structure of Paenibacillus sp.
598K cycloisomaltooligosaccharide glucanotransferase
Biosci. Rep. 37, BSR20170253 (2017).
aA
Tomita, T., Yin, L., Nakamura, S., Kosono, S., Kuzuyama, T.,
Nishiyama, M.
Crystal structure of the 2-iminoglutarate-bound complex ofglutamate dehydrogenase from Corynebacterium glutamicum.
FEBS Lett. 591, 1611 (2017).
aA
Fujita, S., Cho, S.-H., Yoshida, A., Hasebe, F., Tomita, T.,
Kuzuyama, T., Nishiyama, M.
Crystal structure of LysK, an enzyme catalyzing the last step oflysine biosynthesis in Thermus thermophilus, in complex withlysine: Insight into the mechanism for recognition of theamino-group carrier protein, LysW
Biochem. Biophys. Res. Commun. 491, 409 (2017).
aA
Yamada, C., Gotoh, A., Sakanaka, M., Hattie, M.,
Stubbs, K.A., Katayama-Ikegami, A., Hirose, J., Kurihara, S.,
Arakawa, T., Kitaoka, M., Okuda, S., Katayama, T.,
Fushinobu, S.
Molecular insight into evolution of symbiosis between breastfed infants and a member of the human gut microbiome
Bifidobacterium longum
Cell Chem. Biol. 24, 515 (2017).
aA
Furukawa, N., Miyanaga, A., Nakajima, M., Taguchi, H.
The ternary complex structure of D-mandelate dehydrogenase
with NADH and anilino(oxo)acetate.
Biochem. Biophys. Res. Commun. 486, 665 (2017).
aA
Miyanaga, A., Takayanagi, R., Furuya, T., Kawamata, A.,
Itagaki, T., Iwabuchi, Y., Kanoh, N., Kudo, F., Eguchi, T.
Substrate Recognition by a Dual-Function P450
Monooxygenase GfsF Involved in FD-891 Biosynthesis.
ChemBioChem 18, 2179 (2017).
aA
Miyanaga, A.
Structure and function of polyketide biosynthetic enzymes:
various strategies for production of structurally diverse
polyketides
Biosci., Biotechnol., Biochem. 81, 2227 (2017).
aA
Kanazawa, H., Baba, F., Koganei, M., Kondo, J.
A structural basis for the antibiotic resistance conferred by an
N1-methylation of A1408 in 16S rRNA
Nucleic Acids Res. 45, 12529 (2017).

Mizobuchi, T., Nonaka, R., Yoshimura, M., Abe, K.,
Takahashi, S., Kera, Y., Goto, M.
Crystal structure of a pyridoxal 5'-phosphate-dependent
aspartate racemase derived from the bivalve mollusc Scapharcabroughtonii
Acta Crystallogr. F-Struct. Biol. Commun. 73, 651 (2017).
aA
Im, D., Matsui, D., Arakawa, T., Isobe, K., Asano, Y.
Fushinobu S.
Ligand complex structures of L-amino acidoxidase/monooxygenase from Pseudomonas sp. AIU 813 andits conformational change
FEBS Open Bio. 8, 314 (2018).
aA
Tachioka, M., Nakamura, A., Ishida, T., Igarashi, K.,
Samejima, M.
Crystal structure of a family 6 cellobiohydrolase from thebasidiomycete Phanerochaete chrysosporium
Acta Crystallogr. F-Struct. Biol. Commun. 73, 398 (2017).
aA
Maekawa, K., Adachi, M., Matsuzawa, Y., Zhang, Q.,
Kuroki, R., Saito, Y., Shah, M.B.
Structural Basis of Single-Nucleotide Polymorphisms in
Cytochrome P450 2C9
Biochemistry 56, 5476 (2017).
aA
Qin, H.-M., Miyakawa, T., Inoue, A., Nishiyama, R.,
Nakamura, A., Asano, A., Ojima, T., Tanokura, M.
Structural basis for controlling the enzymatic properties ofpolymannuronate preferred alginate lyase FlAlyA from thePL-7 family.
Chem. Commun. 54, 555 (2017).
Aa
Kojima, H., Itoh, T., Yamamoto, K.
On-site reaction for PPARg modification using a specificbifunctional ligand
Bioorg. Med. Chem. 25, 6492 (2017).
aA
Nakamura, F., Kudo, N., Tomachi, Y., Nakata, A.,
Takemoto, M., Ito, A., Tabei, H., Arai, D., Voogd, N. de,
Yoshida, M., Nakao, Y., Fusetani, N.
Halistanol sulfates I and J, new SIRT1-3 inhibitory steroid
sulfates from a marine sponge of the genus Halichondria
J. Antibiot. 71, 273 (2018).
aA
Ogawa, T., Saijo, S., Shimizu, N., Jiang, X., Hirokawa, N.
Mechanism of Catalytic Microtubule Depolymerization via
KIF2-Tubulin Transitional Conformation
Cell Rep. 20, 2626 (2017).
aA
Ou, X., Guo, J., Wang, L., Yang, H., Liu, X., Sun, J., Liu, Z.
Ion- and water-binding sites inside an occluded hourglass poreof a trimeric intracellular cation (TRIC) channel
BMC Struct. Biol. 15, 31 (2017).
aA
Matsui, T., Kodama, T., Mori, T., Tadakoshi, T., Noguchi, H.,
Abe, I., Morita, H.
2-Alkylquinolone alkaloid biosynthesis in the medicinal plant
Evodia rutaecarpa involves collaboration of two novel type III
polyketide synthases
J. Biol. Chem. 292, 9117 (2017).
aA
Jang, J.Y., Koh, M., Bae, H., An, D.R., Im, H.N., Kim, H.S.,
Yoon, J.Y., Yoon, H.-J., Han, B.W., Park, S.B., Suh, S.W.
Structural basis for differential activities of enantiomeric
PPARγ agonists: Binding of S35 to the alternate site
Biochim. Biophys. Acta-Proteins and Proteomics 1865, 674(2017).
aA

Photon Factory Activity Report 2017 #35 (2018) B
Fujimoto, Z., Suzuki, N., Kishine, N., Ichinose, H.,
Momma, M., Kimura, A., Funane, K.
Carbohydrate-binding architecture of the multi-modular
α-1,6-glucosyltransferase from Paenibacillus sp. 598K, which
produces α-1,6-glucosyl-α-glucosaccharides from starch
Biochem. J. 474, 2763 (2017).
aAa
Cho, S.-H., Kim, S.-Y., Tomita, T., Shiraishi, T., Park, J.-S.,
Sato, S., Kudo, F., Eguchi, T., Funa, N., Nishiyama, M.,
Kuzuyama, T.
Fosfomycin Biosynthesis via Transient Cytidylylation of
2-Hydroxyethylphosphonate by the Bifunctional Fom1 Enzyme
ACS Chem. Biol. 12, 2209 (2017).
aA
Sakuraba, H.
Crystal structures of hyperthermophilic archaeal
NAD(P)+-dependent dehydrogenases indicate the presence ofnovel cofactor binding modes
Vitamins 91, 677 (2017).
aA
Nagae, M., Liebschner, D., Yamada, Y.,
Morita-Matsumoto, K., Matsugaki, N., Senda, T., Fujita, M.,
Kinoshita, T., Yamaguchi, Y.
Crystallographic analysis of murine p24γ2 Golgi dynamics
domainProteins-Structure Function and Bioinformatics 85, 764 (2017).
aA
Ooi, W.-Y., Murayama, Y., Mekler, V., Minakhin, L.,
Severinov, K., Yokoyama, S., Sekine, S.-I.
A Thermus phage protein inhibits host RNA polymerase by
preventing template DNA strand loading during open promoter
complex formation
Nucleic Acids Res. 46, 431 (2018).
aA
Mori, T., Iwabuchi, T., Hoshino, S., Wang, H., Matsuda, Y.,
Abe, I.
Molecular basis for the unusual ring reconstruction in fungal
meroterpenoid biogenesis
Nat. Chem. Biol. 13, 1066 (2017).
aA
Shimasaki, T., Yoshida, H., Kamitori, S., Sode, K.
X-ray structures of fructosyl peptide oxidases revealing
residues responsible for gating oxygen access in the oxidative
half reaction
Sci. Rep. 7, 2790 (2017).
aA
Amano, Y., Kikuchi, M., Sato, S., Yokoyama, S., Umehara, T.,
Umezawa, N., Higuchi, T.
Development and crystallographic evaluation of histone H3
peptide with N-terminal serine substitution as a potent inhibitorof lysine-specific demethylase 1
Bioorg. Med. Chem. 25, 2617 (2017).
aA
Nagaya, M., Kimura, M., Gozu, Y., Sato, S., Hirano, K.,
Tochio, T., Nishikawa, A., Tonozuka, T.
Crystal structure of a β-fructofuranosidase with hightransfructosylation activity from Aspergillus kawachii.
Biosci., Biotechnol., Biochem. 81, 1786 (2017).
aA
Matsuzawa, T., Kaneko, S., Kishine, N., Fujimoto, Z., Yaoi, K.
Crystal structure of metagenomic
β-xylosidase/α-L-arabinofuranosidase activated by calcium.
J. Biochem. 162, 173 (2017).
aA
Motoyama, T., Nakano, S., Yamamoto, Y., Tokiwa, H.,
Asano, Y., Ito, S.
Product release mechanism associated with structural changes
in monomeric L-threonine 3-dehydrogenase
Biochemistry 56, 5758 (2017).
aA

Tomita, T., Kobayashi, M., Karita, Y., Yasuno, Y., Shinada, T.,
Nishiyama, M., Kuzuyama, T.
Structure and Mechanism of the Monoterpene Cyclolavandulyl
Diphosphate Synthase that Catalyzes Consecutive
Condensation and Cyclization
Angew. Chem. Int. Ed. 56, 14913 (2017).
aA
Ishiguro, R., Tanaka, N., Abe, K., Nakajima, M., Maeda, T.,
Miyanaga, A., Takahashi, Y., Sugimoto, N., Nakai, H.,
Taguchi, H.
Function and structure relationships of aβ-1,2-glucooligosaccharide-degrading β-glucosidase
FEBS Lett. 591, 3926 (2017).
aA
Abe, K., Nakajima, M., Yamashita, T., Matsunaga, H.,
Kamisuki, S., Nihira, T., Takahashi, Y., Sugimoto, N.,
Miyanaga, A., Nakai, H., Arakawa, T., Fushinobu, S.,
Taguchi, H.
Biochemical and structural analyses of a bacterial
endo-β-1,2-glucanase reveal a new glycoside hydrolase family
J. Biol. Chem. 292, 7487 (2017).
aA
Sato, D., Shiba, T., Karaki, T., Yamagata, W., Nozaki, T.,
Nakazawa, T., Harada, S.
X-Ray snapshots of a pyridoxal enzyme: a catalytic mechanism
involving concerted [1,5]-hydrogen sigmatropy in methionine
-lyaseSci. Rep. 7, 4874 (2017).
aA
Lee, Y., Youn, H.-S., Lee, J.-G., An, J.Y., Park, K.R.,
Kang, J.Y., Ryu, Y.B., Jin, M.S., Park, K.H., Eom, S.H.
Crystal structure of the catalytic domain of Clostridium
perfringens neuraminidase in complex with a
non-carbohydrate-based inhibitor,
2-(cyclohexylamino)ethanesulfonic acid
Biochem. Biophys. Res. Commun. 486, 470 (2017).
aA
Lee, K., Lee, E.H., Son, J., Hwang, K.Y.
Crystal structure of tRNAHis guanylyltransferase from
Saccharomyces cerevisiae
Biochem. Biophys. Res. Commun. 490, 400 (2017).
aA
Shibayama, N., Ohki, M., Tame, J.R.H., Park, S.-Y.
Direct observation of conformational population shifts incrystalline human hemoglobin
J. Biol. Chem. 292, 18258 (2017).
aA
Wang, F., Chen, C., Yang, K., Xu, Y., Liu, X., Gao, F., Liu, H.,
Chen, X., Zhao, Q., Liu, X., Cai, Y., Yang, H.
Michael Acceptor-Based Peptidomimetic Inhibitor of Main
Protease from Porcine Epidemic Diarrhea Virus
J. Med. Chem. 60, 3212 (2017).
aA
Rogov, V.V., Suzuki, H., Marinkovi´c, M., Lang, V., Kato, R.,
Kawasaki, M., Buljubasi´c, M., Sprung, M., Rogova, N.,
Wakatsuki, S., Hamacher-Brady, A., Dötsch, V., Dikic, I.,
Brady, N.R., Novak, I.
Phosphorylation of the mitochondrial autophagy receptor Nix
enhances its interaction with LC3 proteinsSci. Rep. 7, 1131 (2017).
aA
Yamashita, S., Takagi, Y., Nagaike, T., Tomita, K.
Crystal structures of U6 snRNA-specific terminal
uridylyltransferase
Nat. Commun. 8, 15788 (2017).
aA
Jang, J.Y., Bae, H., Lee, Y.J., Choi, Y.I., Kim, H.-J., Park, S.B.,
Suh, S.W., Kim, S.W., Han, B.W.
Structural Basis for the Enhanced Anti-Diabetic Efficacy ofLobeglitazone on PPAR 
Sci. Rep. 8, 31 (2018).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Ohki, M., Sato-Tomita, A., Matsunaga, S., Iseki, M.,
Tame, J.R.H., Shibayama, N., Park, S.-Y.
Molecular mechanism of photoactivation of a light-regulated
adenylate cyclase
Proc. Natl. Acad. Sci. U.S.A. 114, 8562 (2017).
aA
Bahrudin, U., Unno, M., Nishio, K., Kita, A., Li, P., Kato, M.,
Inoue, M., Tsujitani, S., Murakami, T., Sugiyama, R., Saeki, Y.,
Obara, Y., Tanaka, K., Yamaguchi, H., Sakane, I., Kawata, Y.,
Itoh, T., Ninomiya, H., Hisatome, I., Morimoto, Y.
Inhibitory effects of local anesthetics on the proteasome andtheir biological actions
Sci. Rep. 7, 5079 (2017).
NW14A
Chang, J., Kuramochi, M., Beak, Y., Ichiyanagi, K.,
Sekiguchi, H., Sasaki, Y. C.
In Vivo X-Ray Monitoring of Dynamics between Interleukin 2
and Interleukin 15 on NK Cells
Biophys. J. 114, 71a (2018).
aA
Sato-Tomita, A., Shibayama, N.
Size and Shape Controlled Crystallization of Hemoglobin for
Advanced Crystallography
Crystals 7, 282 (2017).
aA
Shimizu, T., Luong, M.V., Cadatal-Raduban, M.,
Empizo, M.J.F., Yamanoi, K., Arita, R., Minami, Y.,
Sarukura, N., Mitsuo, N., Azechi, H., Pham, M.H.,
Nguyen, H.D., Ichiyanagi, K., Nozawa, S., Fukaya, R.,
Adachi, S., Nakamura, K.G., Fukuda, K., Kawazoe, Y.,
Steenbergen, K.G., Schwerdtfeger, P.
High pressure band gap modification of LiCaAlF6
Appl. Phys. Lett. 110, 141902 (2017).
aA
Uemura, Y., Kido, D., Koide, A., Wakisaka, Y., Niwa, Y.,
Nozawa, S., Ichiyanagi, K., Fukaya, R., Adachi, S.,
Katayama, T., Togashi, T., Owada, S., Yabashi, M., Hatada, K.,
Iwase, A., Kudo, A., Takakusagi, S., Yokoyama, T.,
Asakura, K.
Capturing local structure modulations of photoexcited BiVO4
by ultrafast transient X-ray absorption fine structure
spectroscopy
Chem. Commun. 53, 7314 (2017).
aA
Ichiyanagi, K., Takagi, S.
Structural dynamics at high-strain rate in solid studied with
time-resolved X-ray diffraction using synchrotron source
Review of High Pressure Science and Technology/Koatsuryoku
No Kagaku To Gijutsu 27, 119 (2017).

Synchrotron Radiation Science Division
Nagarathinam, K., Jaenecke, F., Nakada-Nakura, Y., Hotta, Y.,
Liu, K., Iwata, S., Stubbs, M.T., Nomura, N., Tanabe, M.
The multidrug-resistance transporter MdfA from Escherichia
coli: Crystallization and X-ray diffraction analysis
Acta Crystallogr. F-Struct. Biol. Commun. 73, 423. (2017).
aA
Tsukahara, H., Iwano, K., Mitsumata, C., Ishikawa, T., Ono, K.
Magnetization reversal processes of isotropic permanent
magnets with various inter-grain exchange interactions
AIP Adv. 7, 056224 (2017).
aA
Tsukahara, H., Iwano, K., Mitsumata, C., Ishikawa, T., Ono, K.
Micromagnetic simulation for the magnetization reversal
process of Nd-Fe-B hot-deformed nanocrystalline permanent
magnets
AIP Adv. 7, 056234 (2017).
aA

Ichinose, H., Suzuki, R., Miyazaki, T., Kimura, K.,
Momma, M., Suzuki, N., Fujimoto, Z., Kimura, A., Funane, K.
Paenibacillus sp. 598K 6-α-glucosyltransferase is essential for
cycloisomaltooligosaccharide synthesis from α-(1 → 4)-glucan
Appl. Microbiol. Biotechnol. 101, 4115 (2017).
aA
Kim, B.S.Y., Minohara, M., Hikita, Y., Bell, C., Hwang, H.Y.
Atomically engineered epitaxial anatase TiO2 metalsemiconductor field-effect transistors
Appl. Phys. Lett. 112, 133506 (2018).
Aa
Yoshida, H., Nishi, N., Wada, K., Nakamura, T.,
Hirashima, M., Kuwabara, N., Kato, R., Kamitori, S.
X-ray structure of a protease-resistant mutant form of humangalectin-9 having two carbohydrate recognition domains with ametal-binding site
Biochem. Biophys. Res. Commun. 490, 1287 (2017).
aA
Senda, M., Senda, T.
Anaerobic crystallization of proteins
Biophys. Rev. 10, 183 (2017).
aA
Moriuchi, R., Takada, K., Takabayashi, M., Yamamoto, Y.,
Shimodaira, J., Kuroda, N., Akiyama, E., Udagawa, M.,
Minai, R., Fukuda, M., Senda, T., Ogawa, N.
Amino acid residues critical for DNA binding and inducer
recognition in CbnR, a LysR-type transcriptional regulator from
Cupriavidus necator NH9
Biosci., Biotechnol., Biochem. 81, 2119 (2017).
aA
Fukumoto, K., Boutchich, M., Arezki, H., Sakurai, K.,
Di Felice, D., Dapp, e Y.J., Onda, K., Koshihara, S.
Ultrafast electron dynamics in twisted graphene byfemtosecond photoemission electron microscopy
Carbon 124, 49 (2017).
aA
Horiuchi, S., Kumai, R., Ishibashi, S.
Strong polarization switching with low-energy loss inhydrogen-bonded organic antiferroelectrics
Chem. Sci. 9, 425 (2018).
aA
Rogov, V.V., Stolz, A., Ravichandran, A.C., Rios-Szwed, D.O.,
Suzuki, H., Kniss, A., Löhr, F., Wakatsuki, S., Dötsch, V.,
Dikic, I., Dobson, R.C.J., McEwan, D.G.
Structural and functional analysis of the GABARAP interaction
motif (GIM)
EMBO Rep. 18, 1382 (2017).
aA
Hifumi, E., Taguchi, H., Kato, R., Uda, T.
Role of the constant region domain in the structural diversity ofhuman antibody light chains
FASEB J. 31, 1668 (2017).
aA
Tsukahara, H., Imamura, H.
Zero-bias-field spin torque induced oscillation of a vortex corein a magnetic junction nano-pillar with high magnetoresistanceratio
J. Phys. Soc. Jpn. 86, 064805 (2017).
aA
Yamashita, K., Kuwabara, N., Nakane, T., Murai, T.,
Mizohata, E., Sugahara, M., Pan, D., Masuda, T., Suzuki, M.,
Sato, T., Kodan, A., Yamaguchi, T., Nango, E., Tanaka, T.,
Tono, K., Joti, Y., Kameshima, T., Hatsui, T., Yabashi, M.,
Manya, H., Endo, T., Kato, R., Senda, T., Kato, H., Iwata, S.,
Ago, H., Yamamoto, M., Yumoto, F., Nakatsu, T.
Experimental phase determination with selenomethionine or
mercury-derivatization in serial femtosecond crystallography
IUCrJ 4, 639 (2017).
aA
Saito, K., Doi, S., Abe, T., Ono, K.
Quantitative evaluation of site preference in Dy-substituted
Nd2Fe14B
J. Alloys Compd. 721, 476 (2017).

Photon Factory Activity Report 2017 #35 (2018) B
Tsuru, S., Fujikawa, T., Stener, M., Decleva, P., Yagishita, A.
Theoretical study of ultrafast x-ray photoelectron diffraction
from molecules undergoing photodissociation
J. Chem. Phys. 148, 124101 (2018).
aA
Tsuchiya, T., Kobayashi, R., Kubota, T., Saito, K., Ono, K.,
Ohhara, T., Nakao, A., Takanashi, K.
Mn2VAl Heusler alloy thin films: Appearance of
antiferromagnetism and exchange bias in a layered structurewith FeJ. Phys. D: Appl. Phys. 51, 065001 (2018).
aA
Kuwabara, N., Kato, R., Manya, H., Endo, T.
Mechanism for the Deficiency in Post-Phosphoryl Modificationof α-Dystroglycan Observed in POMGnT1-Caused Muscular
Dystrophy
J. Cryst. Soc. Jpn., 59, 114 (2017).
aA
Fukumoto, K.
Spatio-temporal observation of photogenerated carrier
dynamics on a semiconductor surface
J. Vac. Soc. Jpn. 60, 388 (2017).
aA
Jaenecke, F., Nakada-Nakura, Y., Nagarathinam, K.,
Ogasawara, S., Liu, K., Hotta, Y., Iwata, S., Nomura, N.,
Tanabe, M.
Generation of Conformation-Specific Antibody Fragments for
Crystallization of the Multidrug Resistance Transporter MdfA
Methods Mol. Biol. 1700, 97 (2018).
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Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.
Protein-phospholipid interplay revealed with crystals of a
calcium pumpNature 545, 193 (2017).
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Tsuru, S., Sako, T., Fujikawa, T., Yagishita, A.
Theory of time-resolved x-ray photoelectron diffraction fromtransient conformational molecules
Phys. Rev. B 96, 043404 (2017).
aA
Ryuo, E., Wakabayashi, D., Koura, A., Shimojo, F.
Ab initio simulation of permanent densification in silica glass
Phys. Rev. B 96, 054206 (2017).
aA
Tabata, C., Klicpera, M., Ouladdiaf, B., Saito, H., Vališka, M.,Uhlířová, K., Miura, N., Sechovský, V., Amitsuka, H.
Neutron diffraction study on single-crystalline UAu2Si2
Phys. Rev. B 96, 214442 (2017).
aA
Iwano, K., Shimoi, Y., Miyamoto, T., Hata, D., Sotome, M.,
Kida, N., Horiuchi, S., Okamoto, H.
Ultrafast Photoinduced Electric-Polarization Switching in a
Hydrogen-Bonded Ferroelectric Crystal
Phys. Rev. Lett. 118, 107404 (2017).
aA
Matsuura, K., Sagayama, H., Uehara, A., Nii, Y., Kajimoto, R.,
Kamazawa, K., Ikeuchi, K., Ji, S., Abe, N., Arima, T.-H.
Spin-Orbital Correlated Dynamics in the Spinel-Type
Vanadium Oxide MnV2 O4
Phys. Rev. Lett. 119, 017201 (2017).
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Thomaston, J.L., Woldeyes, R.A., Nakane, T., Yamashita, A.,
Tanaka, T., Koiwai, K., Brewster, A.S., Barad, B.A., Chen, Y.,
Lemmin, T., Uervirojnangkoorn, M., Arima, T., Kobayashi, J.,
Masuda, T., Suzuki, M., Sugahara, M., Sauter, N.K.,
Tanaka, R., Nureki, O., Tono, K., Joti, Y., Nango, E., Iwata, S.,
Yumoto, F., Fraser, J.S., DeGrado, W.F.
XFEL structures of the influenza M2 proton channel: Roomtemperature water networks and insights into proton conduction
Proc. Natl. Acad. Sci. U.S.A. 114, 13357 (2017).
aA

Kinjo, R., Kagamihata, A., Seike, T., Kishimoto, H.,
Ohashi, H., Yamamoto, S., Tanaka, T.
Lightweight-compact variable-gap undulator with force
cancellation system based on multipole monolithic magnets
Rev. Sci. Instrum. 88, 073302 (2017).
aA
Sugahara, M., Nakane, T., Masuda, T., Suzuki, M., Inoue, S.,
Song, C., Tanaka, R., Nakatsu, T., Mizohata, E., Yumoto, F.,
Tono, K., Joti, Y., Kameshima, T., Hatsui, T., Yabashi, M.,
Nureki, O., Numata, K., Nango, E., Iwata, S.
Hydroxyethyl cellulose matrix applied to serial crystallography
Sci. Rep. 7, 703 (2017).
aA
Takayama, T., Murao, R., Kimura, M.
Quantitative analysis of mineral phases in sinter ore by Rietveld
methodTetsu-To-Hagane/Journal of the Iron and Steel Institute ofJapan 103, 397 (2017).
aA
Voegeli, W., Kamezawa, C., Arakawa, E., Yano, Y. F.,
Shirasawa, T., Takahashi, T., Matsushita, T.
A quick convergent-beam laboratory X-ray reflectometer using
a simultaneous multiple-angle dispersive geometry
J. Appl. Cryst. 50, 570 (2017).

Light Source Division
Harada, K.
Design and Performance of Forth Generation Storage Ring
Light Source
Hyomen Kagaku 38, 571 (2017).
aA
Nakamura, N., Kato, R., Miyajima, T., Shimada, M., Hotei, T.,
Hajima, R.
S2E simulation of an ERL-based high-power EUV-FEL source
for lithography
J. Phys.: Conf. Ser. 874, 012013 (2017).
aA
Nakamura, N.
Resistive-wall impedance effects for the new KEK Light
SourceJ. Phys.: Conf. Ser. 874, 012069 (2017).
aA
Honda, Y., Shimada, M., Miyajima, T., Hotei, T.,
Nakamura, N., Kato, R., Obina, T., Takai, R., Harada, K.,
Ueda, A.
Beam tuning and bunch length measurement in the bunch
compression operation at the cERL
Nucl. Instrum. Methods Phys. Res. A 875, 156 (2017).
aA
Akemoto, M., Arakawa, D., Asaoka, S., Cenni, E., Egi, M.,
Enami, K., Endo, K., Fukuda, S., Furuya, T., Haga, K.,
Hajima, R., Hara, K., Harada, K., Honda, T., Honda, Y.,
Honma, T., Hosoyama, K., Kako, E., Katagiri, H., Kawata, H.,
Kobayashi, Y., Kojima, Y., Kondou, Y., Tanaka, O., Kume, T.,
Kuriki, M., Matsumura, H., Matsushita, H., Michizono, S.,
Miura, T., Miyajima, T., Nagahashi, S., Nagai, R., Nakai, H.,
Nakajima, H., Nakamura, N., Nakanishi, K., Nigorikawa, K.,
Nishimori, N., Nogami, T., Noguchi, S., Obina, T., Qiu, F.,
Sagehashi, H., Sakai, H., Sakanaka, S., Sasaki, S., Satoh, K.,
Sawamura, M., Shimada, M., Shinoe, K., Shishido, T.,
Tadano, M., Takahashi, T., Takai, R., Takenaka, T.,
Tanimoto, Y., Uchiyama, T., Ueda, A., Umemori, K.,
Watanabe, K., Yamamoto, M.
Construction and commissioning of the compact
energy-recovery linac at KEK
Nucl. Instrum. Methods Phys. Res. A 877, 197 (2018).
aAPhoton Factory Activity Report 2017 #35 (2018) B
Yamamoto, N., Takahashi, T., Sakanaka, S.
Reduction and compensation of the transient beam loading
effect in a double rf system of synchrotron light sources
Phys. Rev. Accel. Beams 21, 012001 (2018).
aA
Tanaka, O., Nakamura, N., Shimada, M., Miyajima, T.,
Ueda, A., Obina, T., Takai, R.
New halo formation mechanism at the KEK compact energy
recovery linac
Phys. Rev. Accel. Beams 21, 024202 (2018).
aA
Katoh, M., Fujimoto, M., Mirian, N.S., Konomi, T., Taira, Y.,
Kaneyasu, T., Hosaka, M., Yamamoto, N., Mochihashi, A.,
Takashima, Y., Kuroda, K., Miyamoto, A., Miyamoto, K.,
Sasaki, S.
Helical Phase Structure of Radiation from an Electron in
Circular Motion
Sci. Rep. 7, 6130 (2017).
aA
Higashi, N., Harada, K., Kobayashi, Y., Nagahashi, S.,
Nakamura, N., Ueda, A.
New HMBA lattice for PF-AR
J. Phys.: Conf. Ser. 874, 012025 (2017).
aA
aA
The articles of the experiments utilizing multiple
beamlines are simultaneously printed here in each section.