Nakano Publications (until 21 October 2021)(a) Original papers
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Cai, J, Y. Hodoki, S. Nakano (2021) Phylogenetic diversity of the picocyanobacterial communityfrom a novel winter bloom in Lake Biwa. Limnology 22:161–167
Liu, Y, Y. Chen, H. Fang, H. Lu, X. Wu, G Yu, S. Nakano, R. Li (2021) Relationship between
morphospecies and microcystin-producing genotypes of Microcystis species in Chinese freshwaters.
J. Oceanogr. Limnol. https://doi.org/10.1007/s00343-020-0276-2
Okazaki, Y., S. Fujinaga, M. M. Salcher, C. Callieri, A. Tanaka, A. Kohzu, H. Oyagi, H. Tamaki, S.
Nakano (2021) Microdiversity and phylogeographic diversification of bacterioplankton in pelagic
freshwater systems revealed through long-read amplicon sequencing. Microbiome 9:24
https://doi.org/10.1186/s40168-020-00974-yCai, J., Y. Hodoki, M. Ushio, S. Nakano (2021) Influence of potential grazers on picocyanobacterial
abundance in Lake Biwa revealed with empirical dynamic modeling. Inland Waters 10: 386-396.
https://doi.org/10.1080/20442041.2020.1711682
早川和秀・佐藤祐一・岡本高弘・永田貴丸・後藤直成・冨岡典子・中野伸一（2020）琵琶湖における水質管理のあり方に関する研究と課題、地球環境 25:
Mukherjee, I., M. M. Salcher, A. S. Andrei, V. S. Kavagutti, T. Shabarova, V. Grujčić, M. Haber, P.
Layoun, Y. Hodoki, S. Nakano, K. Šimek, R. Ghai (2020) A freshwater radiation of diplonemids.
Environmental Microbiology 22: 4658–4668
Kataoka, T., K. Ohbayashi, Y. Kobayashi, H. Takasu, S. Nakano, R. Kondo, Y. Hodoki (2020, inpress) Distribution of the harmful bloom-forming cyanobacterium, Microcystis aeruginosa, in 88
freshwater environments in Japan. Microbes & Environments. 35, doi:10.1264/jsme2.ME19110
Hodoki Y, Goda Y, Akatsuka T, Koitabashi T, Nakano S (2020) Long-term variation in abundanceof the non-native phytoplankton Micrasterias hardyi (Zygnematophyceae, Streptophyta) in Lake
Biwa, Japan. Limnology 21: 67-72 doi.org/ 10.1007%2Fs10201-019-00595-x
Mukherjee, I., Y. Hodoki, Y. Okazaki, S. Fujinaga, K. Ohbayashi, S. Nakano (2019) Widespread
Dominance of Kinetoplastids and Unexpected Presence of Diplonemids in Deep Freshwater Lakes.
Frontiers Microbiol. https://doi.org/10.3389/fmicb.2019.02375
Okazaki Y, Nishimura Y, Yoshida T, Ogata H, Nakano S (2019) Genome-resolved viral and cellular
metagenomes revealed potential key virus-host interactions in a deep freshwater lake. Environ.
Microbiol. 21: 4740-4754 https://doi.org/10.1111/1462-2920.14816
Ohbayashi, K., N. Ishikawa, Y. Hodoki, Y. Okada, S. Nakano, M. Ito, M. Shimada (2019) Rapid
development and characterization of EST-SSR markers for the honey locust seed beetle,
Megabruchidius dorsalis (Coleoptera: Bruchidae), using de novo transcriptome analysis based on
next-generation sequencing. App. Entomol. Zool. 54: 141-145 doi.org/
10.1007%2Fs13355-019-00605-5
Hiraoka, S., Y. Okazaki, M. Anda, A. Toyoda, S. Nakano, W. Iwasaki (2019) Metaepigenomic
analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic
community. Nature Communications 10: 159 https://www.nature.com/articles/s41467-018-08103-yDoi, H., K.-H. Chang, S. Nakano (2019) Trophic niche breadth of pond zooplankton species using
stable isotope analysis and the relationship with the abiotic and biotic factors. R. Soc. open sci. 5:
180917. http://dx.doi.org/10.1098/rsos.180917
Okazaki, Y., M. M. Salcher, C. Callieri, S. Nakano (2018) The broad habitat spectrum of the
CL500-11 lineage (phylum Chloroflexi), a dominant bacterioplankton in oxygenated hypolimnia ofdeep freshwater lakes. Frontiers in Microbiology doi: 10.3389/fmicb.2018.02891
Mehrshad M., M. M. Salcher, Y. Okazaki, S. Nakano, K. Šimek, A. S. Andrei, R. Ghai (2018)
Hidden in plain sight - highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome
6: 176.
Mochizuki, A., T. Murata, K. Hosoda, T. Katano, Y. Tanaka, T. Mimura, O. Mitamura, S. Nakano,Y. Okazaki, Y. Sugiyama, Y. Satoh, Y. Watanabe, A. Dulmaa, C. Ayushsureni, D. Ganchimeg, V.
Drucker, V. A. Fialkov, M. Sugiyama (2018) Distributions and geochemical behaviors ofoxyanion-forming trace elements and uranium in the Hövsgöl-Baikal-Yenisei water system ofMongolia and Russia. J. Geochem. Exploration 188: 123-136.
Okano, J., A. Shibata, Y. Sakai, M. Yamaguchi, M. Ohishi, Y. Goda, S. Nakano, N. Okuda. (2018)

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The effect of human activities on benthic macroinvertebrate diversity in tributary lagoons
surrounding Lake Biwa. Limnology 19: 199-207.
Mukherjee, I., Y. Hodoki, S. Nakano (2017) Seasonal dynamics of heterotrophic and plastidic
protists in the water column of Lake Biwa, Japan. Aquat. Microb. Ecol. 80: 123-137.
Okano, J., S. Nakano, I. Tayasu, N. Okuda (2017) Differential responses to predator’s chemical cue
for two ecologically similar species: implication for coexistence mechanism. Zool. Sci. 34: 461-467.
Okazaki, Y., S. Fujinaga, A. Tanaka, A. Kohzu, H. Oyagi, S. Nakano (2017) Ubiquity andquantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion ofdeep freshwater lakes. ISME J. 11, 2279–2293.
Takasu, H., Nakano, S. (2017) Growth and mortality rates of prokaryotes in the hypolimnion of a
deep
freshwater
lake
(Lake
Biwa,
Japan).
InlandWaters.
https://doi.org/10.1080/20442041.2017.1298222
Okazaki, Y., Nakano, S. (2016) Vertical partitioning of freshwater bacterioplankton community in a
deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan). Environ. Microbiol.
Rept. 8: 780-788.
Mukherjee, I., Hodoki, Y., Nakano, S. (2015) Kinetoplastid flagellates overlooked by universal
primers dominate in the oxygenated hypolimnion of Lake Biwa, Japan. FEMS Microb. Ecol. 91
fiv083
Tanabe Y, Okazaki Y, Yoshida M, Matsuura H, Kai A, Shiratori T, Ishida K, Nakano S, Watanabe
MM. (2015) A novel alphaproteobacterial ectosymbiont promotes the growth of thehydrocarbon-rich green alga Botryococcus braunii. Scientific Reports 5 doi:10.1038/srep10467
Nishino, H., Y. Hodoki, S. D. Thottathil, K. Ohbayashi, Y. Takao and S. Nakano (2015)
Identification of species and genotypic compositions of Cryptomonas (Cryptophyceae) populationsin the eutrophic Lake Hira, Japan, using single-cell PCR. Aquat. Ecol. 49: 263-272.
Takasu, H., M. Ushio, J. E. LeClair, S. Nakano (2015) High contribution of Synechococcus tophytoplankton biomass in the aphotic hypolimnion in a deep freshwater lake (Lake Biwa, Japan).
Aquat. Microb. Ecol. 75: 69-79. doi:10.3354/ame01749
Kobayashi, Y., Y. Hodoki, K. Ohbayashi, N. Okuda, S. Nakano (2015) Changes in bacterial
community structure associated with phytoplankton succession in outdoor experimental ponds.
Plankton Benthos Res. 10: 34-44.
Chang, K.-H, H. Doi, Y. Nishibe, G.-S. Nam, S. Nakano (2014) Feeding behavior of the copepod
Temora turbinata: clearance rate and prey preference on the diatom and microbial food web
components in coastal area. J. Ecol. Environ. 37: 225-229.
Ushio, M., K. Makoto, J. Klaminder, H. Takasu, S. Nakano (2014) High-throughput sequencing
shows inconsistent results with a microscope-based analysis of the soil prokaryotic community. Soil
Biology & Biochemistry 76: 53-56.
Takasu, H., T. Kunihiro, S. Nakano (2014) Protistan grazing and viral lysis losses of bacterial carbon
production in a large mesotrophic lake (Lake Biwa). Limnology 15: 257-270.
Sugiyama, Y., PG. Hatcher, RL. Sleighter, T. Suzuki, C. Wada, T. Kumagai, O. Mitamura, T. Katano,
S. Nakano, Y. Tanaka, VV. Drucker, VA. Fialkov, M. Sugiyama (2014) Developing an understandingof dissolved organic matter dynamics in the giant Lake Baikal by ultrahigh resolution mass
spectrometry. Limnology 15: 127-139.
Thottathil, S., K. Hayakawa, Y. Hodoki, C. Yoshimizu, Y. Kobayashi, S. Nakano (2013)
Biogeochemical control on fluorescent dissolved organic matter dynamics in a large freshwater lake
(Lake Biwa, Japan). Limnol. Oceanogr. 58: 2262-2278
Hodoki, Y., Ohbayashi, K,. Kobayashi, Y., Takasu, H., Okuda, N., and Nakano, S. (2013)
Anatoxin-a-producing Raphidiopsis mediterranea Skuja var. grandis Hill is one ecotype of
non-heterocytous Cuspidothrix issatschenkoi (Usacˇev) Rajaniemi et al. in Japanese lakes. Harmful
Algae 21-22: 44-53.
Doi, H., K.-H. Chang, Y. Nishibe, H. Imai and S. Nakano (2013) Lack of congruence between
species diversity indices and community structures of planktonic groups based on local
environmental factors. PLOS ONE, DOI: 10.1371/journal.pone.0069594
Ushio, M., Makoto, K., Klaminder, J., Nakano, S. (2013) CARD-FISH analysis of prokaryotic
community composition and abundance along small-scale vegetation gradients in a dry arctic tundra
ecosystem. Soil Biology & Biochemistry 64: 147-154
Chang, K.-H., H. Imai, K. Ayukawa, S. Sugahara, S. Nakano, Y. Seike (2013) Impact of improved
bottom hypoxia on zooplankton community in shallow eutrophic lake. Knowledge and Management2

of Aquatic Ecosystems 408, 03, http://dx.doi.org/10.1051/kmae/2013038
37. Takasu, H., T. Kunihiro and S. Nakano (2013) Estimation of carbon biomass and community
structure of planktonic bacteria in Lake Biwa using respiratory quinone analysis. Limnology 14:247-256
38. Ohbayashi K, Hodoki Y, Kobayashi Y, Okuda N, Nakano S. (2013) Genotypic composition and therelationship between genotypic composition and geographical proximity of the cyanobacterium
Microcystis aeruginosa in western Japan. Canadian Journal of Microbiology 59: 266-272
39. Kataoka, T., T. Homma, S. Nakano, Y. Hodoki, K. Ohbayashi,R. Kondo (2013) PCR primers forselective detection of intra-species variations in the bloomforming cyanobacterium, Microcystis.
Harmful Algae 23: 46-54
40. Okazaki, M., Hodoki, Y. and Nakano, S. (2013) Seasonal dominance of CL500-11 bacterioplankton(Phylum Chloroflexi) in the oxygenated hypolimnion of Lake Biwa, Japan. FEMS Microbiol Ecol
83: 82-92
41. Kobayashi, Y., Hodoki, Y., Ohbayashi, K., Okuda, N., Nakano, S. (2013) Grazing impact on the
cyanobacterium Microcystis aeruginosa by the heterotrophic flagellate Collodictyon triciliatum in anexperimental pond. Limnology 14: 43-49
42. Okamura, T., Mori, Y., Nakano, S., Kondo, R. (2012) Abundance and bacterivory of heterotrophic
nanoflagellates in the meromictic Lake Suigetsu, Japan. Aquat. Microb. Ecol. 66: 149-158.
43. Hodoki, Y., Ohbayashi, K,. Kobayashi, Y., Okuda, N., and Nakano, S. (2012) Detection andidentification of potentially toxic cyanobacteria: ubiquitous distribution of Microcystis aeruginosaand Cuspidothrix issatschenkoi in Japanese lakes. Harmful Algae 16: 49-57.
44. Takasu, H., Kunihiro, T., Nakano, S. （ 2012 ） Vertical community structure of bacteria andphytoplankton in Lake Biwa using respiratory quinone and pigment analysis. Interdisciplinary
studies on environmental chemistry 6: 377-385.
45. Hodoki, Y., Ohbayashi, K., Kobayashi, Y., Okuda, N. and Nakano, S. (2011) Temporal variation incyanobacteria species composition and photosynthetic activity in experimentally induced blooms. J.
Plankton Res. 33: 1410-1416.
46. Mizuta, S., Imai, H., Chang, K.-H., Doi, H., Nishibe, Y., Nakano, S. (2011) Grazing on Microcystis(Cyanophyceae) by testate amoebae with special reference to cyanobacterial abundance andphysiological state. Limnology 12: 205-211.
47. Chang, KH., M. Sakamoto, JY. Ha, Y. Miyabara, S. Nakano, H. Doi, T. Hanazato (2011) Responseof the plankton community to herbicide application (triazine herbicide, simetryn) in a eutrophicatedsystem: short-term exposure experiment using microcosms. Limnology 12: 11-16.
48. Doi, H., K. H. Chang, S. Nakano (2011) Nitrogen and carbon isotope fractionations of zooplankton
consumers in ponds: potential effects of seston C:N stoichiometry. Marine and Freshwater Research
62: 66-71.
49. Doi, H. Kobari, T., Fukumori, K., Nishibe, Y., Nakano, S. (2010) Trophic niche breadth variability
differs among three Neocalanus species in the subarctic Pacific Ocean. J. Plankton Res. 32:
1733-1737.
50. Chang, K.-H., Doi, H., Nishibe, Y., Nakano, S. (2010) Feeding habits of omnivorous Asplanchna:comparison of diet composition among Asplanchna herricki, A. priodonta and A. girodi in pond
ecosystems. J. Limnol. 69: 209-216.
51. Doi, H., Chang, K. H., Nakano, S. (2010) Dispersal, connectivity of systems, and local conditions
determine local zooplankton communities in artificially connected ponds. Aquat. Biol. 10: 47-55.
52. Ichinotsuka, D., T. Katano, H. Takeoka and S. Nakano (2010) Effects of nutrient supplies on thegrowth rates of planktonic bacteria in Uchiumi Bay, Japan. Aquat. Biol. 9: 123-130.
53. Doi, H., K.-H. Chang, T. Ando, H. Imai and S. Nakano (2010) Shoreline bank construction modify
benthic-pelagic coupling of food webs. Ecological Engineering 36: 601-604.
54. Chang, K.-H., H. Doi, Y. Nishibe, Y. Obayashi, S. Nakano (2009) Spatial and Temporal
Distribution of Zooplankton Communities of Coastal Marine Waters Receiving Different Human
Activities (Fish and Pearl Oyster Farmings) Open Marine Biology Journal 3: 83-88.
55. 中井大介、大塚泰介、中原紘之、中野伸一（2009）人工水路において添加された微細粒子の堆積が付着藻類の群落構造に与える影響、陸水学雑誌 69 (3): 209-221
56. Imai， H.， K.－H. Chang, M. Kusaba and S. Nakano (2009) Temperature-dependent dominance ofMicrocystis (Cyanophyceae) species: M. aeruginosa and M. wesenbergii. J. Plankton Res. 31:
171-178.

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57. Doi, H., K.-H. Chang, T. Ando, H. Imai, I. Ninomiya, and S. Nakano (2009) Resource availability
and ecosystem size predict food-chain lengths in pond ecosystems. Oikos 118: 138-144.
58. 杉山裕子、Hatcher, P. G., 三田村緒佐武、片野俊也、熊谷哲、中野伸一、Drucker, V. V., Fialkov,
V. A.、杉山雅人(2008) 超高分解能 FT-ICRMS を用いたバイカル湖水中未同定溶存有機物の解明、地球科学 42: 165-177
59. Katano, T., S. Nakano, H. Ueno, O. Mitamura, K. Anbutsu, M. Kihira, Y. Satoh, T. Satoh, V. Drucker,
Y. Tanaka, Y. Akagashi, and M. Sugiyama (2008) Abundance and composition of the summer
phytoplankton community along a transect from the Barguzin River to the central basin of Lake
Baikal. Limnology 9: 243-250.
60. Doi, H., K.-H. Chang, T. Ando, H. Imai, S. Nakano, A. Kajimoto and I. Katano (2008) Driftingplankton from reservior subsidize downstream food webs and alter community structure. Oecologia
156: 363-371.
61. Susuki, T., Y. Sugiyama, C. Wada, T. Kumagai, S. Nagao, T. Katano, S. Nakano, O. Mitamura, Y.
Matsuura, V. V. Drucker, V. A. Fialkov, M. Sugiyama (2008) Role of allochthonous organic matter in
Lake Baikal investigated using a 3-dimensional fluorescence excitationemission matrix spectroscopy
and high performance liquid chromatography-mass spectrometry. Verh. Internat. Verein. Limnol.
30: 469-476.
62. Kihira M., K. Anbutsu, H. Azumi, H. Yoshida, O. Mitamura, S. Nakano, T. Katano, Y. Satoh, V.
Drucker and M. Sugiyama (2008) Horizontal distribution and nutritional status of picophytoplanktonin Lake Baikal in summer. Verh. Internat. Verein. Limnol. 30: 598-602.
63. Chang, K.-H., H. Doi, H. Imai, F. Gunji and S. Nakano (2008) Longitudinal distribution of
zooplankton in reservoir-outlet river: the fate of lentic zooplankton discharged from reservoir to its
outlet river and its interaction with river predators. Limnology 9: 125-134.
64. Hirose, M., T. Katano, S. Nakano (2008) Growth and grazing mortality rates of Prochlorococcus,
Synechococcus and eukaryotic picophytoplankton in a bay of the Uwa Sea, Japan. J. Plankton Res.
30: 241-250.
65. Katano, T., S. Nakano, O. Mitamura, H. Yoshida, H. Azumi, Y. Matsuura, Y. Tanaka, H. Maezono, Y.
Satoh, T. Satoh, Y Sugiyama, Y. Watanabe, T. Mimura, Y. Akagashi, H. Machida, V. V. Drucker, T.
Tikhhonova, O. Belykh, V. A. Fialkov, M.-S. Han, S.-H. Kang and M. Sugiyama (2008) Abundance
and pigment type composition of picocyanobacteria in Barguzin Bay, Lake Baikal. Limnology 9:105-114.
66. Hashimoto, T., K. Hyodoh, T. Hirose, S. Nishikawa, T. Katano and S. Nakano (2008) Evaluation of
three phytoplankton species as food for the pearl oyster Pinctada fucata. Aquacul. Internat. 16 (4):309-318.
67. Doi H, K.-H. Chang, Y. Obayashi, M. Yoshihara, M. Shime, T. Yamamoto, Y. Nishibe, S. Nakano(2008) Attached microalgae contribute to planktonic food webs in bays with fish and pearl oyster
farms. Mar. Ecol. Prog. Ser. 353: 107-113.
68. Hirose, M., T. Katano, Y. Hayami, A. Kaneda, T. Kohama, H. Takeoka, S. Nakano (2008) Changes
in the abundance and composition of picophytoplankton in relation to the occurrence of a
Kyuchoand a bottom intrusion in the Bungo Channel, Japan. Est. Coast. Shelf Sci. 76: 293-303.
69. Ohtuska, T., Y. Nakamura, S. Nakano & Y. Miyake (2007) Diatoms in Ishite Stream, near the
Komenono Forest Research Center of Ehime University, Japan. Diatom 23: 29-48
70. Katano, T., A. Kaneda, N. Kanzaki, Y. Obayashi, A. Morimoto, G. Onitsuka, H. Yasuda, S. Mizutani,
Y. Kon, K. Hata, H. Takeoka, S. Nakano (2007) Distribution of prokaryotic picophytoplankton from
Seto Inland Sea to Kuroshio region with special reference to Kyucho enumerated with a dual laser
flow cytometer and a spectrofluorometer. Aquat. Microb. Ecol. 46: 191-201
71. Kim, B.-R., S. Nakano, B.-H. Kim, M.-S. Han (2006) Growth and grazing of the heterotrophic
nanoflagellate, Diphylleia rotans on the cyanobacterium Microcystis aeruginosa. Aquat. Microb.
Ecol. 45: 163-170
72. Satoh, Y., Katano, T., Satoh, T., Mitamura, O., Ambutsu, K., Nakano, S., Ueno, H., Kihira, M.,
Drucker, V., Tanaka, Y., Mimura, T., Watanabe, Y., and Sugiyama, M. (2006) Nutrient limitation in
the primary production of phytoplankton in Lake Baikal. Limnology 7: 225-229.
73. Doi, H., A. Takagi, C. Mizota, J. Okano, S. Nakano and E. Kikuchi (2006) Contribution ofchemoautotrophic production to freshwater macroinvertebrates in a headwater stream. Internat. Rev.
Hydrobiol. 91: 501-508
74. Nakano, S., A. Takeshita, T. Ohtsuka, D. Nakai (2006) Vertical profiles of current velocity and4dissolved oxygen saturation in biofilms on artificial and natural substrates. Limnology 7: 213-218
75. Fukuda, M., J. Matsuyama, T. Katano, S. Nakano, F. Dazzo (2006) Assessing primary and bacterial
production rates in biofilms on pebbles in Ishite Stream, Japan. Microb. Ecol. 52: 1-9
76. Katano, T., S. Nakano (2006) Growth rates of Synechococcus types with different phycoerythrin
composition estimated by dual-laser flow cytometry in relationship to the light environment in the
Uwa Sea. J. Sea Res. 55: 182-190
77. Ichinotuska, D., H. Ueno, S. Nakano (2006) The relative importance of nanoflagellates and ciliates
as consumers of bacteria in a coastal sea area (Japan), where the oligotrichous Strombidium spp. andStrobilidium spp. dominate. Aquat. Microb. Ecol. 42: 139-147
78. Katano, T., S. Nakano , H. Ueno, O. Mitamura, K. Anbutsu, M. Kihira, Y. Satoh, V. Drucker, M.
Sugiyama (2005) Abundance, growth and grazing loss rates of picophytoplankton in Barguzin Bay,
Lake Baikal. Aquat. Ecol. 39: 431-438.
79. Ueno, H., T. Katano, S. Nakano, O. Mitamura, K. Anbutsu, Y. Satoh, V. Drucker, M. Sugiyama(2005) Abundance and community structure of picoplankton and protists in the microbial food webof Barguzin Bay, Lake Baikal. Aquat. Ecol. 39: 263-270
80. Katano, T., A. Kaneda, H. Takeoka, S. Nakano (2005) Seasonal changes in abundance andcomposition of picophytoplankton in relation to occurrence of Kyucho and bottom intrusion in
Uchiumi Bay, Japan. Mar. Ecol. Prog. Ser. 298: 59-67
81. Nakano, S., Y. Tomaru, T. Katano, A. Kaneda, W. Makino, Y. Nishibe, M. Hirose, M. Onji, S.-I.
Kitamura and H. Takeoka H (2004) The dynamics of microbial and herbivorous food webs in acoastal sea with special reference to intermittent nutrient supply from bottom intrusion. Aquat. Ecol.
38: 485-493
82. Nishibe, Y., P. M. Manage, Z. Kawabata and S. Nakano (2004) Trophic coupling of a testate amoeba
and Microcystis species in a hypertrophic pond. Limnology 5: 71-76
83. Kitamura, S., S. Kamata, S. Nakano and S. Suzuki (2004) Solar UV radiation does not inactivate
marine birnavirus in coastal seawater. Dis. Aquat. Org. 58: 251-254
84. Katano, T., M. Hirose and S. Nakano (2004) Discrimination between two phycoerythrin-pigment
types of Synechococcus and their seasonal succession in the Uwa Sea. Microb. Environ. 19: 7-12
85. Fukuda, M., A. Ashida, Y. Tomaru and S. Nakano (2004) An improved method for collecting
heterotrophic microorganisms inhabiting on pebbles in streams. Limnology 5: 41-46
86. Hashimoto, T. and S. Nakano (2003) Nutrient limitation on abundance and growth of phytoplankton
in a Japanese pearl cultivation farm. Mar. Ecol. Prog. Ser. 258:43-50
87. Nakano, S., O. Mitamura, M. Sugiyama, A. Maslennikov, Y. Nishibe, Y. Watanabe, V. Drucker (2003)
The vertical planktonic structure in the central basin of Lake Baikal in summer 1999 with specialreference to microbial food web. Limnology 4: 155-160
88. Nakano, S., A. Murabe, S. Tsujimura, K. Hayakawa, T. Nakajima, M. Kumagai, C. Jiao, Z.
Kawabata (2003) Dominance of Microcystis with special reference to carbon availability in lakewater. Microb. Environ. 18: 38-42
89. Onji, M., S. Nakano, S. Suzuki (2003) Virus-like particles causing growth-suppression of the redtide forming marine dinoflagellate Gymnodinium mikimotoi. Mar. Biotech. 5: 435-442
90. Kitamura, S., S. Kamata, S. Nakano and S. Suzuki (2003) Detection of the marine birnavirus
genome from zooplankton collected in a Japanese coastal sea. Dis. Aquat. Org. 54: 69-72
91. Hirose, M., Y. Nishibe, M. Ueki and S. Nakano (2003) Seasonal changes in the abundance ofautotrophic picoplankton and some environmental factors in the hypereutrophic Furuike Pond.
Aquat. Ecol. 37: 37-43
92. Tomaru, Y., N. Udaka, Z. Kawabata and S. Nakano (2002) Seasonal change of seston size
distribution and phytoplankton composition in bivalve pearl oyster Pinctada fucata martensii
culture farm. Hydrobiologia 481: 181-185
93. Nishibe, Y., Z. Kawabata and S. Nakano (2002) Grazing on Microcystis aeruginosa by theheterotrophic flagellate Collodictyon triciliatum in a hypertrohic pond Aquat. Microb. Ecol. 29:
173-179
94. Hayakawa, K., S. Tsujimura, G. E. Napolitano, S. Nakano, M. Kumagai, T. Nakajima, C. Jiao (2002)
Fatty acid composition as an indicator of physiological condition of the cyanobacterium, Microcystis
aeruginosa. Limnology 3: 29-35
95. Manage, P. M., Z. Kawabata, S. Nakano and Y. Nishibe (2002) The effect of heterotrophic
nanoflagellates on the loss of virus like particles in pond water. Ecol. Res. 17: 473-479.
96. Tomaru, Y., Y. Kumatabara, Z. Kawabata, S. Nakano (2002) Effect of water temperature and5chlorophyll abundance on shell growth of the Japanese pearl oyster, Pinctada fucata martensii, in
suspended culture at different depths and sites. Aquaculture Res. 33: 109-116.
97. Tomaru, Y., S. Ebisuzaki, Z. Kawabata and S. Nakano (2002) Respiration rates of the Japanese
pearl oyster, Pinctada fucata martensii, feeding on Pavlova lutheri and Chaetoceros gracilis.
Aquaculture Res. 33: 33-36.
98. Nishii K., S. Nakano, M. Tamada, P. M. Manage, Y. Nishibe and Z. Kawabata (2001) Microbial
decomposition of dissolved organic matter in a hypertrophic pond. Limnology 2:207-212
99. Nakano S., p. M. Manage, Y. Nishibe and Z. Kawabata (2001) Trophic linkage among heterotrophic
nanoflagellates, ciliates and metazoan zooplankton in a hypereutrophic pond. Aquat. Microb. Ecol.
25: 259-270
100. Manage, P. M., Z. Kawabata and S. Nakano (2001) Dynamics of cyanophages and algicidal bacteriacausing Microcystis aeruginosa mortality. Limnology 2: 73-78
101. Tomaru, Y., Z. Kawabata, S. Nakano (2001) Mass mortality of Japanese pearl oyster, Pinctada
fucata martensii, in relation to water temperature, chlorophyll a and phytoplankton composition. Dis.
Aquat. Org. 44: 61-68
102. Nakano, S., K. Hayakawa, J.-J. Frenette, T. Nakajima, C. Jiao, S. Tsujimura and Michio Kumagai(2001) Cyanobacterial blooms in a shallow lake: a large-scale enclosure assay of the importance of
diurnal stratification. Arch. Hydrobiol. 150: 491-509.
103. Kumagai, M., S. Nakano, C. Jiao, K. Hayakawa, S. Tsujimura, T. Nakajima, J.-J. Frenette and A.
Quesada (2000) Effect of cyanobacterial blooms on thermal stratification. Limnology 1: 191-195.
104. Manage, P. M., Z. Kawabata and S. Nakano (2000) Algicidal effect of the bacterium Alcaligenes
denitrificans on Microcystis spp. Aquat. Microb. Ecol. 22: 111-117.
105. Nakano, S. and Z. Kawabata (2000) Changes in cell volume of bacteria and heterotrophic
nanoflagellates in a hypereutrophic pond. Hydrobiologia 428: 197-203.
106. Tomaru, Y., Z. Kawabata and S. Nakano (2000) Consumption of picoplankton by the bivalve larvaeof Japanese pearl oyster Pinctada fucata martensii. Mar. Ecol. Prog. Ser. 192: 195-202.
107. Nakano, S., T. Nakajima, K. Hayakawa, M. Kumagai and C. Jiao (1999) Blooms of The
Dinoflagellate Ceratium hirundinella in Large Enclosures Placed in Lake Biwa. Jpn. J. Limnol. 60:
495-505.
108. Ishikawa, K., M. Kumagai, S. Nakano and H. Nakahara (1999) The influence of wind on thehorizontal distribution of bloom-forming cyanobacteria in Akanoi Bay, Lake Biwa. Jpn. J. Limnol.
60: 531-538.
109. Manage, P. M., Z. Kawabata and S. Nakano (1999) Seasonal changes in densities of cyanophage
infectious to Microcystis aeruginosa in a hypereutrophic pond. Hydrobiologia 411: 211-216.
110. Tomaru, Y., Z. Kawabata, K. Nakagawa and S. Nakano (1999) The vertical distribution of the pearl
oyster Pinctada fucata martensii spat in Uchiumi Bay. Fish. Sci. 65: 358-361.
111. Ishii, N., Z. Kawabata, S. Nakano and P. M. Manage (1998) Microbial interactions responsible fordissolved DNA production in a hypereutrophic pond. Hydrobiologia 380: 67-76
112. Nakano, S., N. Ishii, P. M. Manage and Z. Kawabata (1998) Trophic roles of heterotrophic
nanoflagellates and ciliates among planktonic organisms in a hypereutrophic pond. Aquat. Microb.
Ecol. 16: 153-161
113. Nakano, S., T. Koitabashi and T. Ueda (1998) Seasonal changes in abundance of heterotrophic
nanoflagellates and their consumption of bacteria in Lake Biwa with special reference to trophic
interactions with Daphnia galeata. Arch. Hydrobiol. 142:21-34
114. Nakano, S., M. Nakanishi, M. Kumagai, T. Sekino, K. Okubo, K. Yokoyama, R. Tsuda, K. Kawabata,
M. Takahashi and R. L. Oliver. (1997) Does advection influence plankton life in Lake Biwa?
Nakanishi's paradox. Verh. Internat. Verein. Limnol. 26:558-561.
115. Nakano, S. (1996) Bacterial response to extracellular dissolved organic carbon released from healthyand senescent Fragilaria crotonensis (Bacillariophyceae) in experimental systems. Hydrobiologia
339: 47-55.
116. Nakano, S., Y. Seike, T. Sekino, M. Okumura, K. Kawabata, K. Fujinaga, M. Nakanishi, O.
Mitamura, M. Kumagai and H. Hashitani (1996) A rapid growth of Aulacoseira granulata(Bacillariophyceae) during the typhoon season in the south basin of Lake Biwa. In BITEX special
issue, R. D. Robarts & M. Kumagai (eds.), Jpn. J. Limnol. 57: 493-500.
117. Seike, Y., S. Nakano, M. Okumura, A. Hirayama, O. Mitamura, K. Fujinaga, M. Nakanishi, H.
Hashitani and M. Kumagai (1996): Temporal variations in the nutritional state of phytoplankton

6communities in Lake Biwa due to typhoons. In BITEX special issue, R. D. Robarts & M. Kumagai(eds.), Jpn. J. Limnol. 57:485-492.
118. Nakano, S., K. Tanaka, T. Sono, T. Wakabayashi, S. Ichise, S. Yamanaka, E. Kaneda, M. Yada, M.
Naitoh, K. Kawabe, K. Maehata, N. Fujiwara, N. Maeda, K. Nomura and M. Nakanishi (1996)
Seasonal changes in horizontal distribution of algal picoplankton in Lake Biwa with specialreference to water temperature, nutrient levels and heterotrophic flagellates. Jpn. J. Limnol.
57:49-55.
119. Miyajima, T., S. Nakano and M. Nakanishi. (1995) Planktonic diatoms in pelagic silicate cycle in
Lake Biwa. Jpn. J. Limnol. 56:211-220.
120. Nakano, S. (1994) Estimation of phosphorus release rate by bacterivorous flagellates in Lake Biwa.
Jpn. J. Limnol. 55:201-211.
121. Nakano, S. (1994) Rates and ratios of nitrogen and phosphorus by a bacterivorous flagellate. Jpn. J.
Limnol. 55:115-223.
122. Nakano, S. (1994) Carbon:nitrogen:phosphorus ratios and nutrient regeneration of a heterotrophic
flagellate fed on bacteria with different elemental ratios. Arch. Hydrobiol. 129:257-271.
123. Miyajima, T., M. Nakanishi, S. Nakano and Y. Tezuka (1994) An autumnal bloom of a diatom
Melosira granulata in a shallow eutrophic lake: physical and chemical constraints on its population
dynamics. Arch. Hydrobiol. 130:143-162.
124. Tezuka, Y. and S. Nakano. (1993) Induction of Anabaena bloom by nutrient enrichment to the lakewater collected from the south basin of Lake Biwa. Jpn. J. Limnol. 54: 85 - 90.
125. Nakano, S. (1992) Changes in bacterioplankton production and dominant algal species in the northbasin of Lake Biwa. Jpn. J. Limnol. 53: 145-149.
126. Nakanishi, M., Y. Tezuka, T. Narita, O. Mitamura, K. Kawabata and S. Nakano (1992)
Phytoplankton primary production and its fate in a pelagic area of Lake Biwa. Arch. Hydrobiol. Beih.
Ergebn. Limnol. 35: 47-67.
127. Nakano, S. and M. Seto (1990) Some ecological factors in the degradation of 2,4-dichlorophenol inwaters from aquatic environments. Jpn. J. Limnol. 51:155-161.

(b) Reviews
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中野伸一（2015）湖沼・海洋沖帯の微生物ループにおける原生生物の生態学的役割、原生動物学雑誌、48: 21-30
中野伸一 (2003) 湖沼・海洋の微生物食物網における摂食者・被食者としての鞭毛虫、月間海洋、海洋微生物 II：基礎、応用研究とその利用、号外 35: 83-93
中野伸一、外丸裕司、川端善一郎、鈴木聡 (2001)宇和海のアコヤガイ漁場における微生物
生態：餌微生物と病原微生物、地球環境、6: 39-45.
中野伸一（2000）湖沼有機物動態における微生物ループでの原生動物の役割、日本生態学
会誌, 50: 41-54.：審査付き(c) Books and book Chapters
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Nakano, S., T. Yahara and T. Nakashizuka (Eds) (2016) The Biodiversity Observation Network in
Asia-Pacific Region: Aquatic Biodiversity Conservation and Ecosystem Service. Springer, Tokyo
中野伸一（2014）微生物の多様性と沿岸生態系の生物生産に果たす役割、沿岸海洋研究会
50周年記念・詳論・沿岸海洋学、日本海洋学会・沿岸海洋研究会編、218-228、恒星社厚生閣
Nakano, S., T. Yahara and T. Nakashizuka (Eds) (2014) The Biodiversity Observation Network in
Asia-Pacific Region: Integrative Observations and Assessments. Springer, Tokyo
Okuda, N., Watanabe, K., Fukumori, K., Nakano, S., Nakazawa, T. (2014) Biodiversity andevolutionary research: from genome to ecosystem: Lake Biwa. Springer, Tokyo, DOI:
10.1007/978-4-431-54150-9_3
Nakano S (2014) Biodiversity researches on microbial loop in freshwater and marine systems. K.
Okuda, N., Watanabe, K., Fukumori, K., Nakano, S., Nakazawa, T. (ed), Biodiversity andevolutionary research: from genome to ecosystem. 51-67, Springer, Tokyo, DOI:
10.1007/978-4-431-54150-9_3
Nakano, S., T. Yahara and T. Nakashizuka (Eds) (2012) The Biodiversity Observation Network in

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Asia-Pacific Region: Toward Further Development of Monitoring. Springer, Tokyo7.

中野伸一（2012）より多様化する微生物食物網の研究．シリーズ現代の生態学、9巻、淡水生態学のフロンティア、日本生態学会編、吉田丈人・鏡味麻衣子・加藤元
海編集、共立出版、142－152．

8.

Nakano S (2010) The importance of developing Indonesian freshwater biodiversity observation
network (BON) as satellite of Asia Pacific BON. Proceeding International Conference on Indonesianinland waters II, Wiadnyana N. N., Phil H. M, Haffner G. D., Nakano S. (Eds), ISBN: 978 602
95862 2 0, 9-14.
中野伸一（分担）（印刷中）生物学大事典、編集代表 石川統、東京化学同人、執筆終了
Chang, K.-H., Doi, H., Nishibe, Y., Obayashi, Y., Yamamoto, T., Yoshihara, M., Shime, M., andNakano, S. (2007) Spatial and temporal distribution of zooplankton communities of coastal marine
waters receiving different human activities (fish and pearl oyster farmings). In Chemical pollution
and environmental changes, Tanabe S., Takeoka, H., Isobe, T., and Nishibe, Y. (eds.), 405-408,
Universal Academy Press, Tokyo
Nakano, S., Hwang, S.-J., Tanida, K. and Hirotani, H. (eds) (2006) Proceedings of the Second
Japan-Korea Joint Symposium on Limnology.
中野伸一（分担）(2006) 炭素の循環、微生物って何？、p. 57-65、日科技連出版社、日本微生物生態学会教育研究部会編著
中野伸一（分担）(2006) 細菌の被食過程、海洋生命系のダイナミクスシリーズ、p. 127-144、
東海大学出版会
中野伸一（分担）(2006) 陸水の事典、日本陸水学会編、講談社、項目多数
Joo, G.-J. and Nakano, S. (2005) Special Issue for the 1st Korea-Japan Joint Limnology Symposium,
2nd volume, pp.83.
中野伸一（分担）(2004) 細菌に対する摂食速度の測定、微生物生態学入門－地球環境を支えるミクロの生物圏、p 78－83、日科技連出版社、日本微生物生態学会教育研究部会編著
Joo, G.-J. and Nakano, S. (2004) Special Issue for the 1st Korea-Japan Joint Limnology Symposium,
1st volume, pp. 83.
中野伸一（分担）(2003) 原生動物、とくに鞭毛虫と繊毛虫について、地球環境調査計測事

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典—陸域編—、p194-198、株式会社フジ・テクノシステム（東京）中野伸一（分担）(2003) プランクトン、琵琶湖流域を読む—多様な河川世界へのガイドブ
ック、下、琵琶湖流域研究会編、p 253-255、サンライズ出版
Kumagai, M., J. Asada and S. Nakano (1998) Gyres Measured by ADCP in Lake Biwa. In PhysicalProcesses in Lakes and Oceans, Coastal and Estuarine Studies 54, J. Imberger (ed.), pp. 668, p
199-208, The American Geophysical Union (Washington, DC)
Kawabata, Z., M.-G. Min, N. Ishii, R. Takata, K. Furukawa, A. Ohshima, M. Ueki, M. P. Manage
and S. Nakano (1998) Evaluation of the effects of biological perturbations on an ecosystem using
aquatic microcosms. In Comparative Evaluation of Environmental Toxicants, Inaba, J. andNakamura, Y. (eds.), pp. 311, p. 109-114, National Institute of Radiological Sciences
Kumagai, M. and S. Nakano (eds.) (1996) BITEX baseline data overviews, Lake Biwa Study
Monographs, Special Issue, pp. 151, Lake Biwa Research Institute(d) Others
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Shin-ichi Nakano, Kazuhide Hayakawa, Yoshikuni Hodoki, Yusuke Okazaki, Indranil Mukherjee,
Shoji D. Thottathil, Hiroyuki Takasu, Shohei Fujinaga (2017) Long-term changes in water quality in
Lake Biwa with special reference to organic matter dynamics, microbial ecology and diversity. The
Proceedings of the 2nd International Conference on Life Sciences and Biotechnology, pp. 18-21.査読無
Enoki, T., Nakashizuka, T., Nakano, S., Miki, T., Lin, Y.-P., Nakaoka, M., Mizumachi, E. andShibata, H. (2014) Progress in the 21st century: a roadmap for the Ecological Society of Japan. Ecol.
Res. 29: 357-368.審査付
Nakano, S., M. Yamamuro, J. Urabe (2010) History of Japanese Limnology. The Limnology andOceanography Bulletin. 19: 78-82.
中野伸一、一瀬諭（2010）：うつりゆく巨大生態系、琵琶湖―植物プランクトンの多様性と

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長期変化、ミルシル、No. 5, 15-17.（独立行政法人 国立科学博物館発行）
Imai, H., K.-H. Chang and S. Nakano (2009) Growth Responses of Harmful Algal Species
Microcystis (Cyanophyceae) under Various Environmental Conditions. Interdisciplinary Studies on
Environmental Chemistry — Environmental Research in Asia, Eds., Y. Obayashi, T. Isobe, A.
Subramanian, S. Suzuki and S. Tanabe, pp. 269–275.審査付き中野伸一 (2008) 微生物世界への旅(17)：微生物の世界も弱肉強食 現代化学 450 (9): 66-67
Ando, T., H. Imai, S. Mizuta, H. Doi, Y. Miyake, S. Nakano (2006) Food selectivity on microalgae
by filtering aquatic insects in a reservoir-stream system. Proceedings of 2nd Japan-Korea Joint
Symposium on Limnology, 37-43 ：審査付き
Imai, H., T. Ando, S. Mizuta, K. Takayama, T. Katano, S. Nakano (2006) Changes in abundance,composition and physiological activity of microalgae in a stream-reservoir system. Proceedings of
2nd Japan-Korea Joint Symposium on Limnology, 57-62 ：審査付き
速水祐一、兼田淳史、小濱剛、中野伸一、武岡英隆（2006）：豊後水道における外洋起源栄養塩の供給機構とその生態系への影響、沿岸海洋研究、43(2)：143－149：審査付き
中野伸一、野崎健太郎、速水祐一、中山耕至、上田宏、程木義邦、Bomchul Kim (2004)：第3 回世界水フォーラム日本陸水学会企画セッションの報告、陸水学雑誌、65: 37-44
Nakano, S., D. Ichinotsuka & H. Ueno (2001) Cross check of instruments for in situ measurement ofchlorophyll concentration using a eutrohic water dominated by Microcystis. Workshop on Water
Quality Monitoring for Lakes and Reservoirs in Developing Countries, The 9th World Lake
Conference, Workshop abstract, 63-67.
Nakano, S. (2004) Recent trends in organic matter studies in freshwater environments. Jpn. J.
Limnol. 60: 107-118
中野伸一（1998）アオコの捕食生物、日本水産学会シンポジウム「アオコの特性とその発生機構」、日本水産学会誌、64 (2): 303-304：審査付き
中野伸一、中島拓男、熊谷道夫、焦春萌、早川和秀、J.-J Frenette、辻村茂男 (1997) アオコ
発生機構解明に関連した隔離水塊実験、琵琶湖研究所所報、16 号、12－18．
熊谷道夫、高橋幹夫、石川加奈子、中原紘之、中野伸一、焦春萌、東善広、中島拓男 (1997)
気象変動に対する南湖水質形成特性に関する研究、琵琶湖研究所所報、14 号、20－23．
Nakano, S., T. Sekino, K. Kawabata, O. Mitamura and M. Nakanishi (1996) Spatial and Temporal
Changes in Abundance of Phytoplankton. In BITEX baseline data overviews, Lake Biwa Study
Monographs, Special Issue, 133-146.：審査付き
Nakano, S. (1995) The role of bacterivorous flagellates in the phosphorus cycling in Lake Biwa,
Japan. In Proceedings of the 7th International Symposium on River and Lake Environments, 1994,
Matsumoto. Okino, T. & Kato, K. (eds.), 9:53-60.：審査付き
Nakano, S., T. Miyajima, M. Nakanishi and Y. Tezuka (1993) Abundance of algal picoplankton andheterotrophic flagellates in the south basin of Lake Biwa, with special attention to nutrient levels.
Ann. Rept. Interdiscipl. Res. Inst. Environ. Sci. 12:55-63.：審査付き
Nakanishi, M., T. Miyajima, S. Nakano and Y. Tezuka . (1992) Studies on the occurrence of
Anabaena and Microcystis blooms in Akanoi Bay of the south basin of Lake Biwa, with special
attention to nutrient levels. Ann. Rept. Interdiscipl. Res. Inst. Environ. Sci. 11: 67-75.：審査付き
平山彰彦、中西正己、宮島利宏、中野伸一、熊谷道夫 （1992） 短期的水質モデルパラ
メータのキャリブレーション 海岸工学論文集 39：976-980：審査付き瀬戸昌之 、中野伸一、牧野純一（1990）多摩川における塩素化フェノールの分解菌密度の分布と季節変化、および添加した塩素化フェノールの分解様式の考察 人間と環境 15：16-22：審査付き瀬戸昌之 、中野伸一、エルニ マルタニ、牧野純一（1989）いくつかの環境試水における低濃度の 2,4-dichlorophenol の分解菌密度とその分解の微生物学的考察 生態化学 9：8-15
瀬戸昌之 、池島耕、中野伸一（1989）多摩川の試水における塩素化フェノールの分解菌密度と塩素化フェノールの分解に関する二、三の考察 人間と環境 14：12-19：審査付き

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