BIOVIA MATERIALS STUDIO
VISUALIZERDATASHEETBIOVIA Materials Studio Visualizer is the core product of theBIOVIA Materials Studio software suite, which is designed tosupport the materials modeling needs of the chemicals andmaterials-based industries. BIOVIA Materials Studio brings
science validated by leading laboratories around the world toyour desktop PC. BIOVIA Materials Studio Visualizer contains
the essential modeling functionality required to support
computational materials science. It can help you understandproperties or processes related to molecules and materials.
BIOVIA Materials Studio Visualizer allows you to see modelsof the system you are studying on your Windows desktop,
increasing your understanding by allowing you to visualize,
manipulate, and analyze the models. You can also make betteruse of access to structural data, improve your presentationof chemical information, and communicate problems andsolutions to your colleagues very easily.

Image of early-stage phase segregation in a diblock copolymer
melt. The blue surface indicates the interface between the twocomponents. The volume is colormapped by the density of oneof the blocks, red being high density, blue being low-density.
The MesoDyn module is used to study these large systems overlong-times such as required to observe these structural
rearrangements.

This is a screenshot of BIOVIA Materials Visualizer, the core
Materials Studio product. BIOVIA Materials Studio can display awide range of materials from bulk amorphous polymers toorganic and inorganic crystals. The modules in the BIOVIA
Materials Studio suite allow access to tools covering size scales
from the quantum to the mesoscale, allowing the calculation ofmany properties.

BIOVIA Materials Studio Visualizer contains the essentialmodeling functionality required to support computational
materials science. It can help you understand properties orprocesses related to molecules and materials. BIOVIA Materials
Studio Visualizer allows you to see models of the system
you are studying on your Windows desktop, increasing yourunderstanding by allowing you to visualize, manipulate, andanalyze the models. You can also make better use of accessto structural data, improve your presentation of chemical
information, and communicate problems and solutions to yourcolleagues very easily.

WHAT CAN BIOVIA MATERIALS STUDIO
VISUALIZER DO?
BIOVIA Materials Studio Visualizer provides modeling, analysis,
and visualization tools, combined with its clear and intuitivegraphical user interface. It offers a high-quality environment
into which you can plug any BIOVIA Materials Studio product.
Within this versatile and completely comprehensive modelingand visualization system, you can:• increase your understanding of materials• improve your communication of chemical information• visualize and model structures from chemical databases• build your own molecules and materials with fast, interactive
sketching, building and editing tools• calculate and display key structural parameters• display the results of calculations – animated dynamics
trajectories, graph data, and molecular models• use scripting to harvest the full power of BIOVIA Materials
Studio Visualizer• annotate models for pictures and diagrams and produce
exceptionally high quality hard-copy output

Arrangement of water molecules at the tip of a carbon
nanotube (CNT). Also displayed is the HOMO, which
is seen to be localized on the CNT. Such quantum
mechanical calculations have been used to gain
insight into the observed influence of water content
on conductance in a single-walled CNT.

BIOVIA Materials Studio Visualizer can run on any PC on yournetwork, allowing scientists to use it when and where theyneed it. Whether used to run a range of BIOVIA Materials Studiomodules or as a stand-alone modeling system, BIOVIA Materials
Studio Visualizer focuses computational and graphics power on
the solution of scientific problems.

FEATURES
Graphical User Interface• Easy-to-use user interface conforming to Microsoft® standards• Comprehensive, context-sensitive, and fully searchable on-line
help, including tutorials covering the main functionality• Multiple undo/redo• Project Explorer offers fast, structured access to project data
in a standard file explorer view
• Tool and menu bar access to other Materials Studio products• Tools to manage and monitor calculations on remote or local
servers support use of BIOVIA Materials Studio Visualizer
with other Materials Studio products• Management of the default project settings

Display and Communication• Display, manipulation, and overlay of high quality 3-D graphicalmodels of materials and molecular structure (details follow)• Display and manipulation of results as 1-D and 2-D graph data
• Display of model and results data in textual and tabular formats• Cut-copy-paste to other PC applications for structural,graphical, tabular, and textual data
• File communication with in-house and commercial structure
databases• Supports a wide range of industry-standard file formats forstructural, graphical, textual, and experimental data:• Structure files: xsd (native), xtd (native), xod (native), msi, car/mdf, cif, mol, sdf, sd,mdl, skc, arc/mdf, his/mdf, acx, trj/msi,.res/. ins (Shelx), pdb, xyz• Chart files: xcd (native), csv, tbl• Table/ Grid files: xgd (native) csv, tbl, std (native)• Text files: txt, htm, pl

Building and Editing Molecular Models• Fast creation of molecular models using a unique 3-D sketcher• Automatic hydrogen addition tool for quick molecular sketching• Fragment sketcher allows fast creation of complex molecules,
such as organometallic compounds; includes comprehensive
fragment library and tools to enable user-defined fragments• Clean utility determines good molecular geometries• Easy editing and input of coordinates and atom properties• Precise atom/object movement and rotation tools• Precise atom positioning tools• User-definition and editing of bond order and hybridization• Display and editing of the properties of all elements, including
a periodic table viewer• Simple cut, copy, and paste of models and parts of models• Versatile bond calculation tools• Symmetry finder for non-periodic systems• Includes extensive library of molecular, crystalline, andamorphous structures• Align molecules in specific directions

Specialist Polymer Building Tools• Polymer builder enables construction of homopolymers,
block, and random copolymers, or dendrimers• Comprehensive library of repeat units• Tools to enable user-defined repeat units• Branch generation toolSpecialist Crystal, Surface, and Layer Building Tools• Crystal builder enables construction of periodic systems
based on lattice parameters, atom positions, and symmetry• Input and editing of symmetry information, including
comprehensive space-group information• Symmetry finder analyzes periodic models and returns
symmetry details• Easy to use supercell creation tool
• Versatile surface builder enables easy surface construction
from non-periodic structures using plane group symmetry,or crystals using a cleave method• Surface builder can create surfaces with vacuum slabs fromcrystal structures• Layer builder creates layered structures from either crystalline
or amorphous materials, or combinations of both

ANALOG BUILDING TOOLS

Model Measurement and Analysis• Markush library enumeration• Maintains 3-D geometry• Specify multiple cores• R-Groups defined from fragment library• Measurement and display of distances, angles, and torsions– updated during structure manipulation• Create and visualize geometry objects such as principal
moments, centres of mass, and planes• Calculation and display of close contacts and hydrogen bonds• Calculation and display of solvent and conolly surfaces;
includes occupied and accessible volumes and surface areas• Visualization of Miller Planes for crystals and surfaces• Superpose multiple physical systems and fit them to either
a target or consensus structure using RMS atoms, moment,
or field fitting• Context-sensitive properties explorer provides text display ofthe properties of atoms and other objects• Animation of trajectory files (for example, from moleculardynamics)• Reaction preview and atom matching tools for use as input totransition state searches• Vibrational analysis tool for displaying and animating normal
modes and spectra• Labeling of molecular models

Nanotechnology Building Tools• Tools available for both single and multi-walled nanotubes• Specify carbon or boron Nitride tubes• Build nanoropes• Create nanoclusters from crystals

Template Building Tools for Mesoscale Structures• Build templates that can be filled with beads to specify
starting conditions for mesoscale calculations• Add variety of formers such as droplets, rods, slabs, shells,and tubes• Define size, orientation, position, and priority of formers• Assign different material fillers to the formers• Build ordered structures such as micelles and bilayers

Mesoscale Molecule Building Tools• Powerful tool for building bead representations of molecules• Build simple linear chains and complex branched structures
such as dendrimers• Builds randomized bead structures

Coarse Graining Tools• Convert molecules or groups of atoms to beads• Coarse grain polymers by repeat unit
• Define patterns to coarse grain molecules with no subunit data
• Preview prior to coarse graining• Automatically generate new bead types

General Visualization Tools• Wide range of display styles—line, stick, ball and stick, spacefilling spheres (CPK), polyhedral• Real-time mouse rotation and scaling of models• Option of orthogonal or perspective views of models• Full customization of the colors of objects in the model andof the background color• Choice of a wide range of background textures and images, andthe ability to add user-created bitmaps as background images• Control over rendering quality, including speed-up of model
manipulation by ‘fast render on move’• Control over the number of unit cells displayed for a periodic
model (including non-integer ranges)• Display of thermal ellipsoids• High quality, flexible display of volumetric data from quantum
and other calculations (of charge density, potentials, orbitals)• Display of surface data from quantum and other calculations(of charge density, potentials, orbitals)• Display of crystal habits including coloring and transparency
from morphology calculations• Control over lighting of the model, including multiple lightsources and the ability to alter color and position• Optional display and labeling of axis and 3-D or 2-D lattices• Custom coloring of all objects

Field Visualization and Analysis• Visualize fields as dots or volumes• Create custom field data using scripting• Plot distribution of field data
• Generate isosurfaces at specific field values• Map field data onto isosurfaces to enhance understanding• Visualize multiple slices of field data
• Orientation of the view along slice normals• Partition fields into isolated segregates• Analyze segregate size, radius and separation distributions
Scripting• Environment for developing Perl scripts including syntax
checking and debug tools• New Perl script document with line numbering, bookmarks,
and syntax coloring• MaterialsScript API to control 3-D model documents:• Access to all properties on the Properties explorer• Manipulate geometry objects such as monitors, centroids etc.
• Manipulate atoms and bonds• Calculate bonds, hydrogen bonds, and close contacts• Calculate conolly and solvent surfaces• Build polymers, crystals, surfaces, and layers• Use the symmetry tools such as SuperCell• Create and manipulate field data
• MaterialsScript API can be used to control the content of thestudy table• Comprehensive on-line documentation of the API

Statistical Tools• Univariate analysis gives mean, standard deviation,distribution data, etc.
• Data transformation tool
• Data standardization tool
• Generation of colored correlation matrices

Presentation• Windows-standard page setup and output to printer• Export of bitmap image creates high quality graphics forreports and presentations• Export of trajectory files as video files in Microsoft .avi format©2014 Dassault Systèmes. All rights reserved. 3DEXPERIENCE, the Compass icon and the 3DS logo, CATIA, SOLIDWORKS, ENOVIA, DELMIA, SIMULIA, GEOVIA, EXALEAD, 3D VIA, BIOVIA and NETVIBES are commercial trademarks
or registered trademarks of Dassault Systèmes or its subsidiaries in the U.S. and/or other countries. All other trademarks are owned by their respective owners. Use of any Dassault Systèmes or its subsidiaries trademarks is subject to their express written approval.

To learn more about BIOVIA Materials Studio, go toaccelrys.com/materials-studioOur 3DEXPERIENCE Platform powers our brand applications, serving 12 industries, and provides a richportfolio of industry solution experiences.
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