Discover. Connect. Inspire.

R eTrEaT 2024

January 26 – 27, 2024
Lake Biwa Otsu Prince Hotel
Organizer| Yasuhiro Murakawa

Venue001Venue |Lake Biwa Otsu Prince Hotel
4-7-7, Nionohama, Otsu City Shiga, 520-8520 Japan

Biwako-hamaotsu

Shimanoseki

Free Shuttle Bus
Otsu Sta.

Nionohama
Sightseeing Port

Biwako HallIshibaHotelsupermarket

Lake Biwa Otsu Prince Hotel

JR Otsu Station

JR B
Kyoto

iwako Line
Keihan-zeze
Zeze

Keihan Ishiyama-Sakamoto Line

Getting to the Hotel Venue
01. by charted bus
Transportation between Kyoto University and Lake Biwa Otsu Prince Hotel will be by chartered bus.
As a general rule, if you do not use that bus, you will be responsible for your own transportation
expenses. See P8 - P11 for the bus number you will be boarding.
Bus S
toSched p &ule
02. by train
The The closest station to the hotel is JR Otsu Station, from which you cantake the hotel’s free shuttle bus. It takes about 10 minutes by bus from Otsu
Station to the hotel.

03. by car
On-site parking for approximately 500 vehicles. 500 yen per night

Contact Information (for Emergency)
Meetup contact (9:00-10:00) 080-1475-7233
ASHBi Office 075-753-9882
Lake Biwa Otsu Prince Hotel
077-521-1111
001

Meetup Time & Place002
Meetup Time |9:45 on Friday, 26 January

Bus will depart at 10:00, any latecomers must travel to the venue at their own expense

Meetup contact for emergency (9:00 - 10:00) 080-1475-7233

Hyakumanben

etIchijo Stre[note] Bus number is assigned to you.
Please check the participant list foryour bus number (P8–P11)

ShirankaikanBus

Meetup at 9:45

ASHBi Main Bldg

Konoe Street002

Higashioji StreetFaculty of Medicine Campus

Program003

1

Organized by Prof. Yasuhiro Murakawa

Jan

9:45 – 21:00

10:00

Departure at Kyoto University

10:40

Reception

11:00

Opening Remarks

11:10 – 12:30

26
FRIHall

1

Hall

1

Hall

1

Hall

1

Hall

1Hall

2

Hall

2

Session 1: Guest Talks
chair: Y. Murakawa

12:30 – 13:30

13:30 – 15:30

11:10

Azusa Inoue | RIKEN IMS

11:50

Shinpei Kawaoka | Tohoku U.

Lunch Discussion

Session 2: ASHBi Researcher Presentations
chair: H. Ueno

Shusei Fujioka | Ueno G
14:00 Kuan-Ting Ho | IsaG
13:30

chair: Y. Hiraoka
14:30

Vargas Meza Xanat | Fujita G

15:00

Yusuke Imoto | Hiraoka G

15:30 – 16:00

Break & Check-in

16:00 – 16:40

Session 3: Guest Talk
chair: Y. Murakawa
16:00

16:40

17:00 – 19:00

Koshi Imami | RIKEN IMS

BreakPoster Session
Poster Session 1 (Odd #)19:00 – 21:00

Dinner / Poster

21:00 – 23:00

Night Session

MIYUKI

003

Program Organized by Prof. Yasuhiro Murakawa

003

2
7:00 –Jan

9:00– 17:45

27

Breakfast & Check-outSAT

9:00 – 11:00

VIONA

Poster Session
Poster Session 2 (Even #)11:00 – 11:10

Photo shoot

11:10 – 12:10

Session 4: ASHBi PI Talks

Hall2Hall

2Hall

1Hall

1Hall

1Hall

1Hall

1

chair: Y. Murakawa

Guillaume Bourque
11:40 Mitinori Saitou
11:10

12:10 – 13:00
13:00 – 14:00

Lunch Discussion

Session 5: Primate Research at ASHBi
chair: Y. Murakawa

Tomoyuki Tsukiyama | PRiME

Panel Discussion
Moderator: Y. Murakawa

14:00

14:15 – 16:25

BreakSession 6: ASHBi Researcher Presentations
chair: M. Yanagita

Jungmin Oh | Amemori G
14:45 Yusuke Murase | Saitou G

14:15

chair: S. Seirin-Lee

Raku Son | Murakawa G
15:50 Mari Ohnuki | Bourque G
15:15

16:25

16:35 – 16:55

BreakSession 7: Feedback and Discussion

16:25

Feedback and Discussion on presentation at Retreat 2024

16:55

Award Session & Closing Remarks

17:45

Depart Lake Biwa Otsu Prince Hotel004

Hotel Map

004[Veune]\ Free Wi-Fi service is available /Hotel

network: PRINCE-HOTEL
password: welcomeph

Convention HallOHMI

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2F
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Poster & DiLobby

nnerniossMaienSVenue

PosterEscalator

Hall 2

Hall 1005

Hotel Map004[Accomodation]

Hotellltion Ha

ConvenOHMI

Restraurants & Bar

36F – 38F

Guest Room

5F – 35F

Lake View Dining Viona[37F] starting at 7:00 a.m.
Seat reservations are not available,
so please arrive well in advance!

GUEST ROOMS

Please check the last two digits of the room number.
Each floor has a similar
floor plan.
11100708

1209

141506

1705

03

1802

19

Elevator Hall

\ Free Wi-Fi service is available /network: PRINCE-HOTEL
password: welcomeph

006

2001

16004

Hotel Map

Hall

1 Session Venue

Speaker

Chair

007

004

Hall

Hotel Map

2 Poster & Dinner

P-02

P-15

P-16

P-27

P-28

P-39

P-40

P-53

P-03

P-14

P-17

P-26

P-29

P-38

P-41

P-52

P-04

P-13

P-18

P-25

P-30

P-37

P-42

P-51

P-05

P-12

P-19

P-24

P-31

P-36

P-43

P-50

P-06

P-11

P-20

P-23

P-32

P-35

P-44

P-49

P-07

P-10P-21

P-22

P-33

P-34

P-45

P-48

P-08

P-09

P-46

P-47008

006

Retreat Awards

Awards for the ASHBi Retreat 2024
1. Best Oral Presentations

Voted by

PIs onlyEvaluated based on the scientific content, the graphical presentation, and the discussion

2. Best Poster Presentations

Voted by

PIs onlyEvaluated based on the scientific content of the poster, the clarity of the presentation,and the content of the discussion

3. Most Outstanding Participant

Voted byEveryone

Evaluated based on Q&A and the ability to bring fun and excitement to theevent

PIs
After Session 6, please submit the voting form with yourchoice of oral presentation, poster presentation,and the most outstanding participant.
Voting Form for PIs

Non-PIs
After Session 6, please submit the voting form withyour choice of the most outstanding participant.

Voting Form for non-PIs

009

006

Oral Presentations

Oral Presentations

010

006

Oral Presenters

Guest Lecturers
No

Name

Affiliation

Title

RIKEN IMS

Genomic imprinting regulated by maternal Polycomb
complexes

G-02 Shinpei KAWAOKA Tohoku Univ

Our challenges to understand cancer cachexia, decodeenhancers, and reveal multi-omics changes in our dailylives

G-03 Koshi IMAMI

Decoding the nascent proteome using mass spectrometryG-01 Azusa INOUERIKEN IMSASHBi PI Talks
No

Name

Affiliation

S-01 Guillaume BOURQUE

Bourque G

S-02 Mitinori SAITOU

Saitou G

ASHBi Primate Research Session
No

Name

Affiliation

S-03 Tomoyuki TSUKIYAMA ASHBi-PRiME

Oral Presenters
NoNameAffiliation

Title

O-01 Shusei FUJIOKA

Ueno G

Single-cell multiomics revealed a post-Tfh phase of
CD4+ T cells in human lymphoid organs

O-02 Kuang-Ting HOIsa G

Quantifying post-saccadic macroscopic traveling brain
waves in marmosets with graph-based algorithmO-03 Xanat VARGAS MEZA Fujita G

Attitudes toward medical care and preparations for the endof life in contemporary Japan: evidence from social media

O-04 Yusuke IMOTO

Hiraoka G

Comprehensive Noise Reduction of Single-Cell Datawith RECODE

O-05 Jungming OH

Amemori G

Selective silencing of the ventral striatum-ventral pallidum
pathway enhances motivational states under approachavoidance conflict in nonhuman primates

O-06 Yusuke MURASE

Saitou G

In vitro reconstruction of epigenetic reprogramming inthe human germline

O-07 Raku SON

Murakawa G

Spatially resolved full-length RNA sequencing at
single-cell resolution

O-08 Mari OHNUKI

Bourque G

Evolution of gene regulation by primate-specifictransposable elements

011

007

Poster Presentations

Poster Presentations

012

007

Poster Presenters
Odd #s| 17:00 – 19:00 on January 26 (Day 1)
Even #s| 09:00 – 11:00 on January 27 (Day 2)

No

Name

PI G

Title

Alev

Comparative analysis of human and non-humanprimate (NHP) axial development

P-03 Rolf Tore ERIKSSON Alev

Axioloid v3.0, an in vitro model of human axial development
containing neural tube, somites and notochord

P-04 Keun-Tae KIM

Alev

Towards reconstituting peri-gastrulation primate
development in vitro

P-05 Yi ZHANG

Alev

Reconstituting non-human primate (NHP) axial
development in vitro

P-06 Jiwon BU

Alev

In silico dissection of human and non-human primate
early embryonic development

P-07 Sirajam MUNIRA

Alev

In situ hybridization chain reaction: a powerful toolfor visualization of gene expression in embryo models

P-08 Rikako KATO

Amemori

Integration of eye position and saccade direction informationfor sequential actions in caudate nucleus neurons

P-09 Satoko AMEMORI

AmemoriDampened top-down influence in the primate frontocingulo-striatal network underlying negative bias inconflict decision-making

P-10 Xun CHEN

BourqueA new transposable element classification and annotation
platform to understand the sequence and regulatory
evolution in the primate lineage

P-11 Zicong ZHANG

Bourque

Massively parallel assays for decoding the site-specificfunction of cis-regulatory sequences

P-12 Masanaga MUTO

Ema

Exploring Developmental Potential of Inner Cell Massin Cynomolgus Monkeys

P-13 Shoma MATSUMOTO Ema

Reconstitution of cynomolgus monkey endometrium-likestructure to mimic the implantation in vitro

P-14 Naoya TORIU

Non-human primates mutant for NPHP1 recapitulate
human juvenile nephronophthisis

P-01
P-02 Sofiane HAMIDI

Yanagita

P-15 Takafumi ICHIKAWA Hiiragi

Polar cell alignment drives mouse epiblast patterningand morphogenesis

P-16 Mei MAKINO

Hiiragi

Light-sheet microscopy of cleared uteri reveals thecoordination between embryo and uterine development

P-17 Jun OKAMOTO

Hiraoka

Spatio-temporal reconstruction of gene expression onthe human axioloid using optimal transport theory

P-18 Yuya TOKUTA

Hiraoka

Cross-species analysis of gene expression data using
Gromov-Wasserstein optimal transport theory
013

007

Poster Presenters
Odd #s| 17:00 – 19:00 on January 26 (Day 1)
Even #s| 09:00 – 11:00 on January 27 (Day 2)

No

NamePI G

Title

P-19 Reona YAMAGUCHI

Isa

Cortical network associated with recovery from spinal
cord injury in macaque monkeys

P-20 Chih-Yang CHEN

Isa

Topographic organization of the saccade related areas
in dorsal frontal cortex of common marmoset

P-21 Yang FANG

Isa

Clarification of pathophysiology of neuropsychiatricdisorders of genome-edited macaque monkeys

P-22 Xiyao YUIsa

Visual awareness-related neural activity changes inprefrontal cortex after V1 lesion

P-23 Longxiang ZHANG

Isa

Elucidating genetic mechanisms underlying large-scale
plasticity in the adult primate brain during the recovery
from spinal cord injury

P-24 Yiping SUN

Isa

Contribution of the reticulospinal tract to hand
dexterity in non-human primates

P-25 Yuxin ZHANG

IsaHow does the superior colliculus encode visual
information in blindsight monkeys?

P-26 Ziguo LANIsaNeuroimaging analysis in nonhuman primate model ofpsychosis

P-27 Kazuhiro TAKEUCHI Murakawa An atlas of functional elements in the human genome
P-28 Raku SONMurakawa

Spatially resolved full-length RNA sequencing at
single-cell resolution

P-29 Sho SEKITO

Murakawa

Systematic identification of novel transcripts in renal
cell carcinoma

P-30 Yotaro OCHI

Ogawa

Chromatin accessibility profiling demonstrates epigenetic
heterogeneity in acute myeloid leukemia

P-31 Tomonori HIRANO

Ogawa

Origin of synchronous or metachronous multiple
pancreatic cancers

P-32 Hirona MAEDAOgawaClonal expansion in bile duct associated with chronic
inflammation

P-33 Masahiro NAGANO

SaitouThe mitotic STAG3–cohesin defines male germline
nucleome

P-34 Yoshiaki NOSAKA

SaitouTBA

P-35 Hanbo WANG

SaitouMechanism of Human Primordial Germ-Cell Specificationand Segregation From the Somatic Lineage

P-36 Steffen PLUNDER

SeirinTBA014

007

Poster Presenters
Odd #s| 17:00 – 19:00 on January 26 (Day 1)
Even #s| 09:00 – 11:00 on January 27 (Day 2)

NoNameAffiliation

Title

P-37

Takahiro HIRAGA

SeirinDevelopment of a machine learning tool forsegmentation of human skin eruptions

P-38

Tamaki WAKAMOTO Seirin

Optimal therapy for lung and brain cancer using
intra- and inter-cellular networks

P-39

Shusei FUJIOKA

Ueno

Single-cell multiomics revealed a post-Tfh phase ofCD4+ T cells in human lymphoid organs

P-40 Naila SHINWARI

Ueno

Comprehensive Assessment of SARS-CoV2 SpikeSpecific Regulatory Cells (Tregs) and Th17 Cells Following
SARS-COV-2 mRNA Vaccination and Infection

P-41

Yuki MASUO

Ueno

Clonal associations of Tph subsets and local
maintenance in rheumatoid arthritis

P-42

Xinxin XUEUenoInhibition of COVID-19 vaccine response by thepresence of low-affinity cross-reactive T cells

P-43

Shinchiro OSHIMAR Yamamoto Decoding cynomolgus macaque hematopoiesis

Tracking self-renewal and differentiation of single

P-44 Youngeun BEEN

R Yamamoto hematopoietic stem cell through DNA recording

P-45

T Yamamoto GENERATING MOUSE TOTIPOTENT CELLS IN VITRO

Moyra LAWRENCE

technology

P-46 Kazunori SUNADOME T Yamamoto

Profiling cell fate in 3D tissue with whole-mount insitu sequencing

P-47

Go OKUIFujita

The Prospect of Rapid Autopsy Program in Kyoto
University: Report and Recommendations

P-48

Taro TSUJIMURA

SignAC

Characterizing single-molecule open chromatin
patterns around CTCF binding sites with Fiber-seq

P-49

Akira HIROTA

SignAC

Towards single-molecule multi-omics analysis

P-50

Shoko TARUMOTO

SignACA novel method for massively parallel DNA methylome
analysis via mono-adaptor tagmentation

P-51

Masataka NAKAYA

PRiMEGenerating transgenic non-human primates via thepiggyBac transposon system

P-52

Rio TSUTSUMi

SaitouTBA

P-53

Takumi WADA

SignACThe applications of information theory to biological systemssuch as signal transduction and cell differentiation

015